BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3566
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96GC5|RM48_HUMAN 39S ribosomal protein L48, mitochondrial OS=Homo sapiens GN=MRPL48
PE=1 SV=2
Length = 212
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
Y +N+ L YD + ESY ++V+ + SLSI+ +ES+A+P + + +++ S + +
Sbjct: 88 YGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQDQGSKMLLD 147
Query: 95 YHLRIYERNVQ 105
L +ER VQ
Sbjct: 148 SVLTTHERVVQ 158
>sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial OS=Mus musculus GN=Mrpl48
PE=2 SV=1
Length = 211
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRM--EPNSSVVD 92
Y +N+ L YD + ESY ++V+++ LSI+ +ES+A+P + + R+ + N V+D
Sbjct: 87 YGVLNIHLTAYDMSLAESYAQYVHRLCNRLSIKVEESYAMPTKTMEVMRLPDQGNKMVLD 146
Query: 93 ANYHLRIYERNVQ 105
+ L +ER VQ
Sbjct: 147 SV--LTTHERVVQ 157
>sp|Q2YDI5|RM48_BOVIN 39S ribosomal protein L48, mitochondrial OS=Bos taurus GN=MRPL48
PE=1 SV=1
Length = 212
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
Y +N+ L YD + ESY ++V+ + LSI+ +ES+A+P + + +++ + + +
Sbjct: 88 YGTLNIHLIAYDMALTESYAQYVHNLCNHLSIKVEESYAMPTKTMEVLQLQDQGNKMLLD 147
Query: 95 YHLRIYERNVQ 105
L +ER VQ
Sbjct: 148 SVLTTHERVVQ 158
>sp|Q9VFB2|RT10_DROME 28S ribosomal protein S10, mitochondrial OS=Drosophila melanogaster
GN=mRpS10 PE=2 SV=2
Length = 173
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 3 FNAFSSVSDSGSKTTNLF------EPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKF 56
A S+V+ S NL EPD LY ++ ++L+G D VL+SY F
Sbjct: 24 MRALSTVNTSSGVQGNLSPAAPAPEPD---------KLYSKLEIELRGIDPAVLKSYTWF 74
Query: 57 VYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYE 101
A L I+ + W+ P+K + RM SV H YE
Sbjct: 75 ATTAAEHLGIEKGKCWS--PRKAHHERMTLLKSVHIYKKHRVQYE 117
>sp|Q5SPH9|RT10_DANRE Probable 28S ribosomal protein S10, mitochondrial OS=Danio rerio
GN=mrps10 PE=2 SV=1
Length = 187
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 34 LYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDA 93
LY ++VQ+KG+D VL+SY+ F A L + ++ + PP+ + + + +
Sbjct: 60 LYQRLSVQVKGHDRAVLDSYEFFATLAAKELGLSLEKVFE-PPKHIDKLTLLKSRHIFKK 118
Query: 94 N---YHLRIYERNVQ 105
+ Y +R + R +Q
Sbjct: 119 HRVQYEMRTHYRCIQ 133
>sp|Q18E60|PCNA_HALWD DNA polymerase sliding clamp OS=Haloquadratum walsbyi (strain DSM
16790) GN=pcn PE=3 SV=1
Length = 247
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 12 SGSKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPV------LESYQKFVYKIAASLS 65
+ + +LF DYL +N IP EV ++L G +FPV E Y + Y +A
Sbjct: 187 TAGEADSLFSLDYLKDMNKAIPKDAEVTIEL-GQEFPVKVHYGIAEGYGEITYMLAP--R 243
Query: 66 IQSD 69
IQSD
Sbjct: 244 IQSD 247
>sp|Q615B0|RT10_CAEBR Probable 28S ribosomal protein S10, mitochondrial
OS=Caenorhabditis briggsae GN=CBG15759 PE=3 SV=1
Length = 158
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 34 LYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALP 75
LY + ++ +G+D VL+SY F+ ++ L I LP
Sbjct: 43 LYSSIEIEYRGHDKAVLKSYTTFLQQVCKHLEIPQGRLEVLP 84
>sp|Q9XWV5|RT10_CAEEL Probable 28S ribosomal protein S10, mitochondrial
OS=Caenorhabditis elegans GN=Y37D8A.18 PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 34 LYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALP 75
LY V ++ +G+D VL+SY F+ ++ L I LP
Sbjct: 40 LYSSVEIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLP 81
>sp|P82664|RT10_HUMAN 28S ribosomal protein S10, mitochondrial OS=Homo sapiens GN=MRPS10
PE=1 SV=2
Length = 201
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 30 PEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASL--SIQSDESWALPPQKF 79
P+I LY ++V +KG+D VL+SY+ F A L SI+ E PP+K
Sbjct: 69 PDI-LYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISIKVHE----PPRKI 115
>sp|P82670|RT10_BOVIN 28S ribosomal protein S10, mitochondrial OS=Bos taurus GN=MRPS10
PE=1 SV=2
Length = 201
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 34 LYDEVNVQLKGYDFPVLESYQKFVYKIAASLSI 66
LY ++V +KG+D VL+SY+ F A L I
Sbjct: 72 LYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGI 104
>sp|Q12271|INP53_YEAST Polyphosphatidylinositol phosphatase INP53 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=INP53 PE=1
SV=1
Length = 1107
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 24 YLDHLNPEIP--LYDE--VNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKF 79
Y DHL+ + L DE + ++G+ E++ +V K+ +L+I S +SW +F
Sbjct: 195 YRDHLDTNLKQILDDEGFLTTVIRGF----AETFVSYVKKLKVALTIISKQSWKRAGTRF 250
Query: 80 NITRMEPNSSVVD 92
N ++ ++V +
Sbjct: 251 NARGVDDEANVAN 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,869,783
Number of Sequences: 539616
Number of extensions: 1430340
Number of successful extensions: 3020
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3011
Number of HSP's gapped (non-prelim): 14
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)