Query psy3566
Match_columns 105
No_of_seqs 103 out of 168
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:55:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_J 30S ribosomal protein S 99.9 2.2E-27 7.4E-32 162.0 5.8 69 37-105 1-71 (98)
2 2vqe_J 30S ribosomal protein S 99.9 1.2E-27 3.9E-32 164.9 1.8 70 36-105 2-73 (105)
3 3u5c_U 40S ribosomal protein S 99.9 5.7E-26 1.9E-30 161.2 7.4 74 32-105 16-92 (121)
4 2xzm_J Ribosomal protein S10 c 99.9 1.1E-25 3.8E-30 159.2 8.7 73 33-105 14-90 (120)
5 3j20_L 30S ribosomal protein S 99.9 3.6E-26 1.2E-30 157.6 5.6 70 36-105 2-74 (102)
6 2zkq_j 40S ribosomal protein S 99.9 4.4E-26 1.5E-30 161.1 6.2 74 32-105 14-90 (119)
7 3iz6_J 40S ribosomal protein S 99.9 6.7E-26 2.3E-30 162.3 1.8 76 30-105 21-99 (128)
8 3bbn_J Ribosomal protein S10; 99.9 9.3E-24 3.2E-28 160.5 2.6 70 36-105 99-170 (197)
9 3d3c_J 30S ribosomal protein S 99.6 5.3E-16 1.8E-20 104.4 4.4 51 36-105 9-59 (87)
10 3r2c_J Protein NUSE, 30S ribos 99.4 1.2E-13 4E-18 92.4 4.0 46 36-81 4-49 (83)
11 3bbo_K Ribosomal protein L11; 56.1 5.2 0.00018 30.6 1.9 31 48-78 190-220 (224)
12 2ln3_A De novo designed protei 55.7 20 0.0007 22.9 4.4 38 38-75 29-66 (83)
13 2kl8_A OR15; structural genomi 50.4 38 0.0013 21.7 5.1 36 37-72 41-76 (85)
14 1hc8_A Ribosomal protein L11; 49.4 11 0.00037 24.0 2.3 23 48-70 54-76 (76)
15 3lpe_B DNA-directed RNA polyme 34.0 14 0.00048 22.5 1.0 17 59-75 40-56 (59)
16 2zfd_B Putative uncharacterize 33.2 57 0.002 22.0 4.1 57 2-70 5-62 (123)
17 2z14_A EF-hand domain-containi 28.8 8.9 0.0003 26.6 -0.7 39 37-76 92-130 (133)
18 1gnl_A HCP, hybrid cluster pro 28.3 44 0.0015 28.6 3.4 29 39-71 234-262 (544)
19 1mms_A Protein (ribosomal prot 26.4 32 0.0011 24.2 1.9 23 48-70 118-140 (140)
20 3pa6_A Microcephalin; BRCT dom 26.4 39 0.0013 22.1 2.2 42 33-74 6-47 (107)
21 1ryq_A DNA-directed RNA polyme 25.9 18 0.00062 22.9 0.5 16 59-74 51-66 (69)
22 4g0x_A Protein argonaute 1; MI 25.6 81 0.0028 21.3 3.8 30 45-74 23-52 (147)
23 2zkr_i 60S ribosomal protein L 25.0 42 0.0014 24.2 2.3 23 48-70 123-145 (165)
24 3j21_H 50S ribosomal protein L 24.8 36 0.0012 24.5 2.0 24 48-71 117-140 (164)
25 3p8b_A DNA-directed RNA polyme 24.7 19 0.00065 23.5 0.4 16 59-74 63-78 (81)
26 3i9v_7 NADH-quinone oxidoreduc 22.3 53 0.0018 23.0 2.4 20 70-89 46-65 (129)
27 4g0o_A Protein argonaute 5; MI 21.6 95 0.0032 20.7 3.6 27 45-71 23-49 (139)
28 2ftc_G L11MT, MRP-L11, 39S rib 21.3 51 0.0018 23.2 2.2 23 48-70 123-145 (145)
No 1
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=99.94 E-value=2.2e-27 Score=162.01 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=67.0
Q ss_pred eEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566 37 EVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ 105 (105)
Q Consensus 37 ~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq 105 (105)
+|+|+|+|||+.+||+|+++|+++|+++|++|.||+|||| .++||+||||++|++++|||+|||+|+||
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~v~Gpi~lPtk~~~~tvlrSPh~~kksreqfE~rthkRlId 71 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVD 71 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCCCCCCCCCCCCEEEEEECCSSSSCTTCCEEEEEECBCCCCC
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeccccCCCCeEEEEEEecCCCCCCchhHhEEEEEEEEEEE
Confidence 4799999999999999999999999999999999999999 69999999999999999999999999986
No 2
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...
Probab=99.93 E-value=1.2e-27 Score=164.92 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=67.3
Q ss_pred ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566 36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ 105 (105)
Q Consensus 36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq 105 (105)
++|+|+|+|||+.+||+|+++|+++|+++|++|.||+|||| .++||+||||++||+|+|||+|||+|+||
T Consensus 2 ~kirI~Lks~d~~~Ld~~~~~i~~~ak~~g~~v~gpi~LPtk~~~~tvlrSPhv~kksreqfE~r~hkR~I~ 73 (105)
T 2vqe_J 2 PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVD 73 (105)
T ss_dssp -CBCEEEEESCSSTTTTTTTHHHHTTTSSSCCCCCCCCCCCBCCEEECCSSSSSCTTCCCEEECCBEEECCC
T ss_pred cEEEEEEEEcCHHHHHHHHHHHHHHHHHhCCcccCccCCCCEEEEEEEEcCCCCCCChHHhEEeEEEEEEEE
Confidence 46899999999999999999999999999999999999999 58999999999999999999999999986
No 3
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=99.93 E-value=5.7e-26 Score=161.22 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCC-cceeeeEEecceeeecC
Q psy3566 32 IPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNS-SVVDANYHLRIYERNVQ 105 (105)
Q Consensus 32 ~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~-kk~r~qfelrth~R~Iq 105 (105)
.+..++|+|+|+|||+.+||+++.+|.++|+++|++|.||+|||| .++||+||||++ |++|+|||+|||+|+|+
T Consensus 16 ~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlId 92 (121)
T 3u5c_U 16 QQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYID 92 (121)
T ss_dssp CCCCCCEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEE
T ss_pred cccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEE
Confidence 567889999999999999999999999999999999999999999 799999999996 99999999999999985
No 4
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J
Probab=99.92 E-value=1.1e-25 Score=159.19 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=70.4
Q ss_pred CccceEEEEEeecChhHHhhHHHHHHHHHHH-cCCeeeccccCCC--ceEEEEecCC-CCcceeeeEEecceeeecC
Q psy3566 33 PLYDEVNVQLKGYDFPVLESYQKFVYKIAAS-LSIQSDESWALPP--QKFNITRMEP-NSSVVDANYHLRIYERNVQ 105 (105)
Q Consensus 33 ply~~inIklkgyD~~lLe~~~~~I~~~a~~-~gi~V~g~~aLPt--~~~tVlrs~h-v~kk~r~qfelrth~R~Iq 105 (105)
+.+++|+|+|+|||+.+||+++.+|.++|++ +|+.|.||+|||| .++||+|||| ++|++|+|||+|||+|+|+
T Consensus 14 ~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~~g~~v~GPipLPtk~~~~TvlRSPhgv~kksreqFE~RthKRlId 90 (120)
T 2xzm_J 14 VKKVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKTLVITVRKSPCGEGSKTWDRFEMRIYKRIID 90 (120)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHHHTSTTCEEEEEEECCCEEEEEEEECSSSSCSSCCEEEEEEEEEEEEEE
T ss_pred ccceEEEEEEEECCHHHHHHHHHHHHHHHHHhcCCeeecCcCCCceeEEEEEEeCCCCCCCcchHheEEEEEEEEEE
Confidence 5678999999999999999999999999999 9999999999999 6999999999 9999999999999999985
No 5
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.92 E-value=3.6e-26 Score=157.61 Aligned_cols=70 Identities=13% Similarity=0.261 Sum_probs=67.9
Q ss_pred ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCC-cceeeeEEecceeeecC
Q psy3566 36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNS-SVVDANYHLRIYERNVQ 105 (105)
Q Consensus 36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~-kk~r~qfelrth~R~Iq 105 (105)
++|+|+|+|||+.+||+++.+|.++|+++|++|.||+|||| .++||+||||++ ||+|+|||+|||+|+|+
T Consensus 2 ~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlId 74 (102)
T 3j20_L 2 QKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLID 74 (102)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEE
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999 799999999998 89999999999999985
No 6
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.92 E-value=4.4e-26 Score=161.06 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCC-CCcceeeeEEecceeeecC
Q psy3566 32 IPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEP-NSSVVDANYHLRIYERNVQ 105 (105)
Q Consensus 32 ~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~h-v~kk~r~qfelrth~R~Iq 105 (105)
.+.+++|+|+|+|||+.+||+++.+|.++|+++|++|.||+|||| .++||+|||| ++|++|+|||+|||+|+|+
T Consensus 14 ~~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhg~~KksreqFE~RthKRlId 90 (119)
T 2zkq_j 14 EVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLID 90 (119)
T ss_dssp -----CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCCCCC
T ss_pred cccceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccCCcCCCCeeEEEEEEcCCCCCCCcchHheEeEEEEEEEE
Confidence 467889999999999999999999999999999999999999999 6899999999 6899999999999999986
No 7
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.91 E-value=6.7e-26 Score=162.30 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=72.2
Q ss_pred CCCCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCC-cceeeeEEecceeeecC
Q psy3566 30 PEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNS-SVVDANYHLRIYERNVQ 105 (105)
Q Consensus 30 ~~~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~-kk~r~qfelrth~R~Iq 105 (105)
...+.+++|+|+|+|||+.+||+++.+|.++|+++|++|.||+|||| .++||+||||++ |++|+|||+|||+|+|+
T Consensus 21 ~~~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPTk~~r~TvlRSPhv~gKkSrEqFE~RtHKRlId 99 (128)
T 3iz6_J 21 SSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVID 99 (128)
T ss_dssp CCSSSBCCCCCCEEEEESCHHHHHHHHHHHHHHHHHHSSCCCCCEEEEEEEEEEECCCCCSSCCSSCCEEEEEEEEEEE
T ss_pred cccccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCceecccCCCCceEEEEEEecCCCCCCcchhheEEEEEEEEEE
Confidence 34568899999999999999999999999999999999999999999 799999999999 89999999999999985
No 8
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.88 E-value=9.3e-24 Score=160.51 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=68.1
Q ss_pred ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566 36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ 105 (105)
Q Consensus 36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq 105 (105)
++|+|+|+|||+.+||+++.+|.++|+++|++|.||+|||| +++||+||||++|++|+|||+|||+|+|+
T Consensus 99 ~kIRI~LkS~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPIpLPTK~~r~TVLRSPHv~KKSREQFEmRtHKRlId 170 (197)
T 3bbn_J 99 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTHQRLID 170 (197)
T ss_dssp CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSCCSSCCCEEEEEEEEEEE
T ss_pred cEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCeeEEEEEeeCCCCCCCcceeEEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999 69999999999999999999999999985
No 9
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=99.60 E-value=5.3e-16 Score=104.40 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=49.1
Q ss_pred ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCCceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566 36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105 (105)
Q Consensus 36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt~~~tVlrs~hv~kk~r~qfelrth~R~Iq 105 (105)
++|+|+|+|||+.+||+++++|+++|+++|++|.||+||||++ |||+|+|+
T Consensus 9 ~kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~-------------------R~HKRlId 59 (87)
T 3d3c_J 9 QRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS-------------------RTHLRLVD 59 (87)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET-------------------TEEEEEEE
T ss_pred eEEEEEEEECCHHHHHHHHHHHHHHHHHhCCccCCCCCCCCCC-------------------ceEEEEEE
Confidence 5899999999999999999999999999999999999999988 99999985
No 10
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=99.41 E-value=1.2e-13 Score=92.37 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=42.9
Q ss_pred ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCCceEEE
Q psy3566 36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNI 81 (105)
Q Consensus 36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt~~~tV 81 (105)
++|+|+|+|||+.+||++++.|+++|+++|++|.||+||||++..+
T Consensus 4 ~kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~~~~ 49 (83)
T 3r2c_J 4 EKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEF 49 (83)
T ss_dssp CCEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEE
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeeCCcCCCCcceEE
Confidence 5799999999999999999999999999999999999999965544
No 11
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=56.10 E-value=5.2 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=20.2
Q ss_pred hHHhhHHHHHHHHHHHcCCeeeccccCCCce
Q psy3566 48 PVLESYQKFVYKIAASLSIQSDESWALPPQK 78 (105)
Q Consensus 48 ~lLe~~~~~I~~~a~~~gi~V~g~~aLPt~~ 78 (105)
.=||...+.|.-+|+.+|++|.|+.|-|.++
T Consensus 190 ~~Le~avK~IlGTArSMGi~V~g~~p~~~~~ 220 (224)
T 3bbo_K 190 TTIESAMRIIAGTAANMGIDIDPPILVKKKK 220 (224)
T ss_dssp SSHHHHHHHHHHHHTTTTEEEC---------
T ss_pred cCHHHHHHHHHHHHHhCeeEEeCCCCChhhc
Confidence 3488999999999999999999998877754
No 12
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=55.73 E-value=20 Score=22.94 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=34.3
Q ss_pred EEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCC
Q psy3566 38 VNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALP 75 (105)
Q Consensus 38 inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLP 75 (105)
+.+...+-|-.-+|.|..-.-.+|+++|.+|..-|.=-
T Consensus 29 levefdstddkeieeferdmedlakktgvqiqkqwqgn 66 (83)
T 2ln3_A 29 LEVEFDSTDDKEIEEFERDMEDLAKKTGVQIQKQWQGN 66 (83)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred eEEEecCCChHHHHHHHhHHHHHHHhhchhHHHHhcCC
Confidence 78888999999999999999999999999998877543
No 13
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=50.38 E-value=38 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=30.7
Q ss_pred eEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccc
Q psy3566 37 EVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESW 72 (105)
Q Consensus 37 ~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~ 72 (105)
.+.|++.|---.+-..-++..-++|+.++|.|.-.+
T Consensus 41 dleiritgvpeqvrkelakeaerlakefnitvtyti 76 (85)
T 2kl8_A 41 DLEIRITGVPEQVRKELAKEAERLAKEFNITVTYTI 76 (85)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred eeEEEEecChHHHHHHHHHHHHHHHHhcCeEEEEEE
Confidence 478999999888889999999999999999986443
No 14
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=49.38 E-value=11 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.0
Q ss_pred hHHhhHHHHHHHHHHHcCCeeec
Q psy3566 48 PVLESYQKFVYKIAASLSIQSDE 70 (105)
Q Consensus 48 ~lLe~~~~~I~~~a~~~gi~V~g 70 (105)
.=||.-.+-|.-+|+.+|++|.|
T Consensus 54 ~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 54 ASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp SSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CCHHHHHHHHHHHHHcCeeEeeC
Confidence 44899999999999999999975
No 15
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=33.96 E-value=14 Score=22.52 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.2
Q ss_pred HHHHHcCCeeeccccCC
Q psy3566 59 KIAASLSIQSDESWALP 75 (105)
Q Consensus 59 ~~a~~~gi~V~g~~aLP 75 (105)
..|+.+++++.|.||+-
T Consensus 40 wvAk~~~i~~pG~YAl~ 56 (59)
T 3lpe_B 40 EIAKKAGIDIKGKYALS 56 (59)
T ss_dssp HHHHHTTCCSCEEECSE
T ss_pred HHHHHhCCCCCcEEEEE
Confidence 36889999999999973
No 16
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=33.16 E-value=57 Score=21.96 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=40.4
Q ss_pred ccccccccccC-CCCCCCCCCccccccCCCCCCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeec
Q psy3566 2 KFNAFSSVSDS-GSKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDE 70 (105)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~l~eP~yl~~~~~~~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g 70 (105)
..|||.=||.| |.+-.+|+|.+.-. -...|+-.+. --+.-.+.|-.+|+.+|.+|..
T Consensus 5 ~lNAFdiIs~S~g~dLSgLFe~~~~~--------~r~tRF~S~~----~a~~ii~klEe~a~~lg~~v~k 62 (123)
T 2zfd_B 5 RMNAFDIISGSPGFNLSGLFGDARKY--------DRVERFVSAW----TAERVVERLEEIVSAENLTVAK 62 (123)
T ss_dssp CCCHHHHHHTSTTSSSGGGGGGGCSS--------CCCEEEEESS----CHHHHHHHHHHHHHHTTCEEEE
T ss_pred cccHHHHHHHCcCCCchHhcCccccc--------ccceEEEeCC----CHHHHHHHHHHHHHHCCCEEEE
Confidence 57999999988 55999999764211 1135665554 3445567899999999998863
No 17
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=28.78 E-value=8.9 Score=26.63 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=31.0
Q ss_pred eEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC
Q psy3566 37 EVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP 76 (105)
Q Consensus 37 ~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt 76 (105)
.-+|.+-|..+.|+| +-.|.-+..+.+|+.+..+.++|.
T Consensus 92 G~~v~i~gR~f~I~d-cD~fTr~~l~~~gi~~~~~~~~P~ 130 (133)
T 2z14_A 92 GTEVVFYGRTFKIYD-CDAFTRNFLRKIGVKVNPPVQSGP 130 (133)
T ss_dssp TCEEEETTEEEEEEE-ECHHHHHHHHHTTCCCCCCC----
T ss_pred CCEEEEecEEEEEEe-CCHHHHHHHHHcCCCCCCcccCCC
Confidence 358889999999999 788888888899999999999986
No 18
>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans, iron anomalous; HET: FSO; 1.25A {Desulfovibrio desulfuricans} SCOP: e.26.1.1 PDB: 1gn9_A* 1oa0_A* 1upx_A*
Probab=28.28 E-value=44 Score=28.56 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=26.1
Q ss_pred EEEEeecChhHHhhHHHHHHHHHHHcCCeeecc
Q psy3566 39 NVQLKGYDFPVLESYQKFVYKIAASLSIQSDES 71 (105)
Q Consensus 39 nIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~ 71 (105)
||-+.|||+.++| .|.+.++..||+|-.+
T Consensus 234 nIlVsGHd~~~le----~ll~qt~akGInvyTh 262 (544)
T 1gnl_A 234 GILISGHDLRDLE----MLLKQTEGTGVDVYTH 262 (544)
T ss_dssp EEEEESSCHHHHH----HHHHHHTTTTCEEEEC
T ss_pred eEEEECCChHHHH----HHHHHhcCCCeEEEcc
Confidence 9999999999999 7888889999999754
No 19
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=26.39 E-value=32 Score=24.19 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.8
Q ss_pred hHHhhHHHHHHHHHHHcCCeeec
Q psy3566 48 PVLESYQKFVYKIAASLSIQSDE 70 (105)
Q Consensus 48 ~lLe~~~~~I~~~a~~~gi~V~g 70 (105)
.=||...+-|.-+|+.+|++|.|
T Consensus 118 ~~l~~a~k~I~GTArSmGi~V~g 140 (140)
T 1mms_A 118 NSLEAAMKIIEGTAKSMGIEVVD 140 (140)
T ss_dssp SSHHHHHHHHHHHHTTTTEEEC-
T ss_pred ccHHHHHHHHHHHHHcCeeEeeC
Confidence 34899999999999999999975
No 20
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=26.39 E-value=39 Score=22.12 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=31.9
Q ss_pred CccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccC
Q psy3566 33 PLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWAL 74 (105)
Q Consensus 33 ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aL 74 (105)
|++..+.|-+.++...-.|..+..+..+++.+|++|...+.-
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~ 47 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNK 47 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCT
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCC
Confidence 567778888888754444455567899999999999988763
No 21
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=25.89 E-value=18 Score=22.85 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.4
Q ss_pred HHHHHcCCeeeccccC
Q psy3566 59 KIAASLSIQSDESWAL 74 (105)
Q Consensus 59 ~~a~~~gi~V~g~~aL 74 (105)
..|+.+|+++.|.|||
T Consensus 51 ~IAK~l~i~~pG~YAl 66 (69)
T 1ryq_A 51 EIAKKIGAKVPGKYAI 66 (69)
T ss_dssp HHHHHHTCCSCEEEEE
T ss_pred HHHHHhCCCCCceEEE
Confidence 4577799999999986
No 22
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=25.55 E-value=81 Score=21.25 Aligned_cols=30 Identities=3% Similarity=-0.032 Sum_probs=25.0
Q ss_pred cChhHHhhHHHHHHHHHHHcCCeeeccccC
Q psy3566 45 YDFPVLESYQKFVYKIAASLSIQSDESWAL 74 (105)
Q Consensus 45 yD~~lLe~~~~~I~~~a~~~gi~V~g~~aL 74 (105)
.+...++.|...+.+.|+.+|+.+..|-.+
T Consensus 23 ~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~ 52 (147)
T 4g0x_A 23 VQDNLARTFCQELAQMCYVSGMAFNPEPVL 52 (147)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEECSSCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCCee
Confidence 345789999999999999999999876433
No 23
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=24.96 E-value=42 Score=24.23 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=20.1
Q ss_pred hHHhhHHHHHHHHHHHcCCeeec
Q psy3566 48 PVLESYQKFVYKIAASLSIQSDE 70 (105)
Q Consensus 48 ~lLe~~~~~I~~~a~~~gi~V~g 70 (105)
.=|+...+-|.-+|+.+|++|.|
T Consensus 123 ~~l~~a~k~I~GTArSmGi~V~g 145 (165)
T 2zkr_i 123 RELSGTIKEILGTAQSVGCNVDG 145 (165)
T ss_dssp SSHHHHHHHHHHHHHHHTEEEC-
T ss_pred ccHHHHHHHHHHHHHhCeeEEeC
Confidence 34899999999999999999987
No 24
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.82 E-value=36 Score=24.52 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=16.3
Q ss_pred hHHhhHHHHHHHHHHHcCCeeecc
Q psy3566 48 PVLESYQKFVYKIAASLSIQSDES 71 (105)
Q Consensus 48 ~lLe~~~~~I~~~a~~~gi~V~g~ 71 (105)
.=|+...+-|.-+|+.+|++|.|.
T Consensus 117 ~~l~~a~k~I~GTArSmGi~V~g~ 140 (164)
T 3j21_H 117 LTLKAAAKEVIGTALSMGVTVEGK 140 (164)
T ss_dssp CSHHHHHHHHHHHHHCCC------
T ss_pred cCHHHHHHHHHHHhhcceEEEecc
Confidence 448899999999999999999985
No 25
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=24.70 E-value=19 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.6
Q ss_pred HHHHHcCCeeeccccC
Q psy3566 59 KIAASLSIQSDESWAL 74 (105)
Q Consensus 59 ~~a~~~gi~V~g~~aL 74 (105)
..|+.+++++.|.|||
T Consensus 63 ~IAk~l~i~~PG~YAl 78 (81)
T 3p8b_A 63 EIAKKIGAKVPGKYAI 78 (81)
T ss_dssp HHHHHHTCCSSEEEEE
T ss_pred HHHHHhCCCCCceEEE
Confidence 4678899999999986
No 26
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=22.35 E-value=53 Score=23.00 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=16.8
Q ss_pred ccccCCCceEEEEecCCCCc
Q psy3566 70 ESWALPPQKFNITRMEPNSS 89 (105)
Q Consensus 70 g~~aLPt~~~tVlrs~hv~k 89 (105)
.||-|||..++|-.|...+.
T Consensus 46 RPydLPTtvMsvsLS~~~ge 65 (129)
T 3i9v_7 46 RPYDLPTTIMTASLSDGLGE 65 (129)
T ss_dssp SCCCCSCSEEEEEEECSSSC
T ss_pred CcccCCceeEEEEeccCCCC
Confidence 48999999999998887543
No 27
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=21.64 E-value=95 Score=20.74 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=24.5
Q ss_pred cChhHHhhHHHHHHHHHHHcCCeeecc
Q psy3566 45 YDFPVLESYQKFVYKIAASLSIQSDES 71 (105)
Q Consensus 45 yD~~lLe~~~~~I~~~a~~~gi~V~g~ 71 (105)
.|...++.|...+.+.|+.+|+.+..|
T Consensus 23 ~~~~~~~~F~~~L~~~~~~~Gm~i~~p 49 (139)
T 4g0o_A 23 IDRGLPQEFCKQLIGMCVSKGMEFKPQ 49 (139)
T ss_dssp SCTTHHHHHHHHHHHHHHHHTCEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 567889999999999999999999875
No 28
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=21.28 E-value=51 Score=23.24 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=20.4
Q ss_pred hHHhhHHHHHHHHHHHcCCeeec
Q psy3566 48 PVLESYQKFVYKIAASLSIQSDE 70 (105)
Q Consensus 48 ~lLe~~~~~I~~~a~~~gi~V~g 70 (105)
.=||.-.+-|.-+|+.+|++|.+
T Consensus 123 ~~l~~a~k~I~GTArSmGi~V~~ 145 (145)
T 2ftc_G 123 VPLSSVVRSIIGSARSLGIRVVK 145 (145)
T ss_pred CCHHHHHHHHHHHHhcCeEEEeC
Confidence 44899999999999999999964
Done!