RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3566
         (105 letters)



>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus
           thermophilus [TaxId: 274]}
          Length = 98

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 38  VNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN--- 94
           + ++L+G+D   L++  + + + A     Q      LP +    T           +   
Sbjct: 2   IRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFT--VIRGPFKHKDSRE 59

Query: 95  -YHLRIYER 102
            + LR + R
Sbjct: 60  HFELRTHNR 68


>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia
          coli [TaxId: 562]}
          Length = 98

 Score = 26.6 bits (59), Expect = 0.36
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 40 VQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNIT 82
          ++LK +D  +++     + + A     Q      LP +K   T
Sbjct: 4  IRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFT 46


>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen
           (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 122

 Score = 23.7 bits (51), Expect = 4.2
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 1   MKFNAFSSVSDSGSKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKI 60
                   +  +G +  ++F  DYL          D + + L G ++PV     + V+++
Sbjct: 52  FHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHL-GTNYPV-----RLVFEL 105

Query: 61  AASLS 65
               +
Sbjct: 106 VGGRA 110


>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 189

 Score = 23.3 bits (49), Expect = 7.2
 Identities = 3/19 (15%), Positives = 10/19 (52%)

Query: 48  PVLESYQKFVYKIAASLSI 66
            +L +Y+  + K+    ++
Sbjct: 146 SLLSTYENIIVKVQGDATV 164


>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 181

 Score = 22.9 bits (48), Expect = 8.6
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 48  PVLESYQKFVYKIAASLSIQSDESWA 73
           P+LE Y+  +  + A  ++  DE +A
Sbjct: 150 PLLEYYRDQLKTVDAVGTM--DEVFA 173


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,616
Number of extensions: 15092
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 7
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)