BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3567
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 32/165 (19%)
Query: 67 EFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGT 121
F +++ +LK L LDIS NK+S + LA L+SL N+I + +G
Sbjct: 161 SFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGI 218
Query: 122 LEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
L L+ +S N N +K++ L +L +L LDL+ N+I
Sbjct: 219 LTNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQI 254
Query: 182 ESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
++ G K+ E+ L NQI +ISP ++ L L L EN L
Sbjct: 255 SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 298
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 32/165 (19%)
Query: 67 EFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGT 121
F +++ +LK L LDIS NK+S + LA L+SL N+I + +G
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI-TPLGI 219
Query: 122 LEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
L L+ +S N N +K++ L +L +L LDL+ N+I
Sbjct: 220 LTNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQI 255
Query: 182 ESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
++ G K+ E+ L NQI +ISP ++ L L L EN L
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 299
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 68 FPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTL 122
F +++ +LK L LDIS NK+S + LA L+SL N+I + +G L
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGIL 215
Query: 123 EKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
L+ +S N N +K++ L +L +L LDL+ N+I
Sbjct: 216 TNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQIS 251
Query: 183 SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
++ G K+ E+ L NQI +ISP ++ L L L EN L
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 294
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 68 FPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTL 122
F +++ +LK L LDIS NK+S + LA L+SL N+I + +G L
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGIL 215
Query: 123 EKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
L+ +S N N +K++ L +L +L LDL+ N+I
Sbjct: 216 TNLDELSLNGNQLKDIG------------------------TLASLTNLTDLDLANNQIS 251
Query: 183 SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
++ G K+ E+ L NQI +ISP ++ L L L EN L
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 294
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 55 TGVINLSHQGFKEFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ 109
+G+ +L F +++ +LK L LDIS NK+S + LA L+SL
Sbjct: 148 SGLTSLQQLSFSS--NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATN 204
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQ 169
N+I + +G L L+ +S N N +K++ L +L
Sbjct: 205 NQISDITP-LGILTNLDELSLNGNQLKDIG------------------------TLASLT 239
Query: 170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
+L LDL+ N+I ++ G K+ E+ L NQI +ISP ++ L L L EN L
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 295
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 55 TGVINLSHQGFKEFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ 109
+G+ +L F +++ +LK L LDIS NK+S + LA L+SL
Sbjct: 148 SGLTSLQQLSFSS--NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATN 204
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQ 169
N+I + +G L L+ +S N N +K++ L +L
Sbjct: 205 NQISDITP-LGILTNLDELSLNGNQLKDIG------------------------TLASLT 239
Query: 170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
+L LDL+ N+I ++ G K+ E+ L NQI +ISP ++ L L L EN L
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 295
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 55 TGVINLSHQGFKEFPDEMNELK-----AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ 109
+G+ +L F +++ +LK L LDIS NK+S + LA L+SL
Sbjct: 148 SGLTSLQQLNFSS--NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATN 204
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQ 169
N+I + +G L L+ +S N N +K++ L +L
Sbjct: 205 NQISDITP-LGILTNLDELSLNGNQLKDIG------------------------TLASLT 239
Query: 170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
+L LDL+ N+I ++ G K+ E+ L NQI +ISP ++ L L L EN L
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 295
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 41/255 (16%)
Query: 57 VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS------------------------- 90
V++LS F E P+ + L A L TLD+S N S
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 91 --KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPXXXXXXX 146
K P L++ L SL N + ++P +G+L KL ++ N+++ E+P
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 147 XXXXXXXXQNQL-NKFPTVLFNLQHLDVLDLSFNRIES-IPDGIGKMKVIE-MNLNKNQI 203
N L + P+ L N +L+ + LS NR+ IP IG+++ + + L+ N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 204 C-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGY 262
+I ++ +C L L L N L IP + S + N K + +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSG----KIAANFIAGKRYVYIK-- 576
Query: 263 NNYMDSELQRSGLLI 277
N+ M E +G L+
Sbjct: 577 NDGMKKECHGAGNLL 591
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 41/255 (16%)
Query: 57 VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS------------------------- 90
V++LS F E P+ + L A L TLD+S N S
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 91 --KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPXXXXXXX 146
K P L++ L SL N + ++P +G+L KL ++ N+++ E+P
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 147 XXXXXXXXQNQL-NKFPTVLFNLQHLDVLDLSFNRIES-IPDGIGKMKVIE-MNLNKNQI 203
N L + P+ L N +L+ + LS NR+ IP IG+++ + + L+ N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 204 C-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGY 262
+I ++ +C L L L N L IP + S + N K + +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSG----KIAANFIAGKRYVYIK-- 579
Query: 263 NNYMDSELQRSGLLI 277
N+ M E +G L+
Sbjct: 580 NDGMKKECHGAGNLL 594
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P NQL + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIP----DGIGKMKVIEMNLNKNQICHISPD- 209
NQL P + L L VLD+SFNR+ S+P G+G+++ E+ L N++ + P
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKGNELKTLPPGL 143
Query: 210 ISECVRLKILRLEEN 224
++ +L+ L L N
Sbjct: 144 LTPTPKLEKLSLANN 158
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P NQL + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIP----DGIGKMKVIEMNLNKNQICHISPD- 209
NQL P + L L VLD+SFNR+ S+P G+G+++ E+ L N++ + P
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKGNELKTLPPGL 143
Query: 210 ISECVRLKILRLEEN 224
++ +L+ L L N
Sbjct: 144 LTPTPKLEKLSLANN 158
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P NQL + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPD-IS 211
NQL P + L L VLD+SFNR+ S+P G G ++ E+ L N++ + P ++
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 212 ECVRLKILRLEENCLA 227
+L+ L L N L
Sbjct: 146 PTPKLEKLSLANNQLT 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P NQL + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPD-IS 211
NQL P + L L VLD+SFNR+ S+P G G ++ E+ L N++ + P ++
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 212 ECVRLKILRLEENCLA 227
+L+ L L N L
Sbjct: 146 PTPKLEKLSLANNQLT 161
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 67 EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE 126
E P E+ L + LR LD+S N+++ P +L S LK F N + +LP + G L L+
Sbjct: 261 ELPAEIKNL-SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQ 319
Query: 127 --NVSGN 131
V GN
Sbjct: 320 FLGVEGN 326
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 24/97 (24%)
Query: 156 NQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVR 215
N L + P + NL +L VLDLS NR+ S+P +G C +
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG----------------------SCFQ 294
Query: 216 LKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
LK +N + +P N+ L VEGN E
Sbjct: 295 LKYFYFFDNM--VTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L ++ N +++ P ++ + L+ L N++ SLP ++G+ +L+ N++ L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 139 P 139
P
Sbjct: 309 P 309
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 61 SHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPK 117
S QG + P+ +R L + NK+ D+++ + L +LT+ N+++SLP
Sbjct: 55 SVQGIQYLPN--------VRYLALGGNKLH----DISALKELTNLTYLILTGNQLQSLPN 102
Query: 118 DIGTLEKLENVSGNC---NLIKELPXXX-XXXXXXXXXXXXQNQLNKFPTVLFN-LQHLD 172
G +KL N+ N ++ LP NQL P +F+ L +L
Sbjct: 103 --GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160
Query: 173 VLDLSFNRIESIPDGIGK--MKVIEMNLNKNQICHISPD--ISECVRLKILRLEEN 224
LDLS+N+++S+P+G+ ++ ++ L +NQ+ + PD L+ + L +N
Sbjct: 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDN 215
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P N L + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIP----DGIGKMKVIEMNLNKNQICHISPD- 209
NQL P + L L VLD+SFNR+ S+P G+G+++ E+ L N++ + P
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKGNELKTLPPGL 143
Query: 210 ISECVRLKILRLEEN 224
++ +L+ L L N
Sbjct: 144 LTPTPKLEKLSLANN 158
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P N L + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 31/174 (17%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLP 116
+N + P ++ + +L +S+N + F L L Y L L D+ ++ L
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 117 KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDL 176
D GTL V G +L NQL P + L L VLD+
Sbjct: 72 VD-GTLP----VLGTLDL-------------------SHNQLQSLPLLGQTLPALTVLDV 107
Query: 177 SFNRIESIPDGI--GKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227
SFNR+ S+P G G ++ E+ L N++ + P ++ +L+ L L N L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 78 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 135
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P N L + P L N L++LD L L N + +IP G
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIP----DGIGKMKVIEMNLNKNQICHISPD- 209
NQL P + L L VLD+SFNR+ S+P G+G+++ E+ L N++ + P
Sbjct: 87 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKGNELKTLPPGL 144
Query: 210 ISECVRLKILRLEEN 224
++ +L+ L L N
Sbjct: 145 LTPTPKLEKLSLANN 159
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P N L + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 31/174 (17%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLP 116
+N + P ++ + +L +S+N + F L L Y L L D+ ++ L
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 117 KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDL 176
D GTL V G +L NQL P + L L VLD+
Sbjct: 72 VD-GTLP----VLGTLDL-------------------SHNQLQSLPLLGQTLPALTVLDV 107
Query: 177 SFNRIESIPDGI--GKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227
SFNR+ S+P G G ++ E+ L N++ + P ++ +L+ L L N L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P N L + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIP----DGIGKMKVIEMNLNKNQICHISPD- 209
NQL P + L L VLD+SFNR+ S+P G+G+++ E+ L N++ + P
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKGNELKTLPPGL 143
Query: 210 ISECVRLKILRLEENCLA 227
++ +L+ L L N L
Sbjct: 144 LTPTPKLEKLSLANNNLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP----KDIGTLEKLENVSGNC 132
VL TLD+S N++ PL + L L N++ SLP + +G L++L + GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LKGN- 134
Query: 133 NLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P N L + P L N L++LD L L N + +IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPD-IS 211
NQL P + L L VLD+SFNR+ S+P G G ++ E+ L N++ + P ++
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 212 ECVRLKILRLEEN 224
+L+ L L N
Sbjct: 146 PTPKLEKLSLANN 158
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 66 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 115
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL V N ++ P Q K P NL +L
Sbjct: 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175
Query: 172 DVLDLSFNRIESIPDGIGKMKVIE--------MNLNKNQICHISPDISECVRLKILRLEE 223
+ LDLS N+I+SI ++V+ ++L+ N + I P + +RL L L
Sbjct: 176 EHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 233
Query: 224 NCLAINAIPTCI 235
N ++N + TCI
Sbjct: 234 NFDSLNVMKTCI 245
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 42 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL V N ++ P Q K P NL +L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 172 DVLDLSFNRIESIPDGIGKMKVIE--------MNLNKNQICHISPDISECVRLKILRLEE 223
+ LDLS N+I+SI ++V+ ++L+ N + I P + +RL L L
Sbjct: 152 EHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209
Query: 224 NCLAINAIPTCI 235
N ++N + TCI
Sbjct: 210 NFDSLNVMKTCI 221
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGI 188
PT +L L VL+++ N+++S+PDGI
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGI 513
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 42 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL V N ++ P Q K P NL +L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 172 DVLDLSFNRIESIPDGIGKMKVIE--------MNLNKNQICHISPDISECVRLKILRLEE 223
+ LDLS N+I+SI ++V+ ++L+ N + I P + +RL L L
Sbjct: 152 EHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209
Query: 224 NCLAINAIPTCI 235
N ++N + TCI
Sbjct: 210 NFDSLNVMKTCI 221
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 72 MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGN 131
+ EL A L+ LD+ N+++ P +L + LL+ + D N++ LP+ +LE L +
Sbjct: 115 LPELPASLKHLDVDNNQLTXLP-ELPA--LLEYINADNNQLTXLPELPTSLEVLSVRNNQ 171
Query: 132 CNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSF----NRIESIPDG 187
+ ELP N L P V H + ++ F NRI IP+
Sbjct: 172 LTFLPELPESLEALDVST------NLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN 225
Query: 188 I 188
I
Sbjct: 226 I 226
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 25/159 (15%)
Query: 61 SHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPK 117
S QG + P+ +R L + NK+ D+++ + L +LT+ N+++SLP
Sbjct: 55 SVQGIQYLPN--------VRYLALGGNKLH----DISALKELTNLTYLILTGNQLQSLPN 102
Query: 118 DIGTLEKLENVSGNC---NLIKELPXXX-XXXXXXXXXXXXQNQLNKFPTVLFN-LQHLD 172
G +KL N+ N ++ LP NQL P +F+ L +L
Sbjct: 103 --GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 173 VLDLSFNRIESIPDGIGK--MKVIEMNLNKNQICHISPD 209
LDL N+++S+P+G+ ++ +++LN NQ+ + PD
Sbjct: 161 RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV-PD 198
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSG---NCNLIKELPXXX-XXXXXXXXXXXXQNQ 157
LK L +N+++SLP G +KL N++ N ++ LP NQ
Sbjct: 111 LKELVLVENQLQSLPD--GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 158 LNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
L P +F+ L L L L+ N+++S+PDG+
Sbjct: 169 LQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 28/139 (20%)
Query: 54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF---DQN 110
+T ++L K P+ + + L L + NK+ P + + L SLT+ N
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLSTN 86
Query: 111 KIESLPKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFN-LQ 169
+++SLP G +KL +KEL NQL P +F+ L
Sbjct: 87 QLQSLPN--GVFDKLTQ-------LKEL-------------ALNTNQLQSLPDGVFDKLT 124
Query: 170 HLDVLDLSFNRIESIPDGI 188
L L L N+++S+PDG+
Sbjct: 125 QLKDLRLYQNQLKSVPDGV 143
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 156 NQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGIGK--MKVIEMNLNKNQICHISPD 209
NQL P +F+ L L L L+ N+++S+PDG+ ++ ++ L +NQ+ + PD
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PD 141
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 105 LTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPXXX-XXXXXXXXXXXXQNQLNKFP 162
L + NK++SLP + L +L +S + N I+ LP +N+L P
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 163 TVLFN-LQHLDVLDLSFNRIESIPDGI 188
+F+ L L L L N+++S+PDGI
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGI 119
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 156 NQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI----GKMKVIEMNLNKNQ 202
N+L P +F+ L L L LS N+I+S+PDG+ K+ ++ ++ NK Q
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 44 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 93
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL V N ++ P Q K P NL +L
Sbjct: 94 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 172 DVLDLSFNRIESI 184
+ LDLS N+I+SI
Sbjct: 154 EHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 43 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 92
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL V N ++ P Q K P NL +L
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 172 DVLDLSFNRIESI 184
+ LDLS N+I+SI
Sbjct: 153 EHLDLSSNKIQSI 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 43 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 92
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL V N ++ P Q K P NL +L
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 172 DVLDLSFNRIESI 184
+ LDLS N+I+SI
Sbjct: 153 EHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 42 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL V N ++ P Q K P NL +L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 172 DVLDLSFNRIESI 184
+ LDLS N+I+SI
Sbjct: 152 EHLDLSSNKIQSI 164
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 19/185 (10%)
Query: 75 LKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNL 134
L L+ L +S N+++ P L S +L K ++ N++ SLP L++L
Sbjct: 139 LPPGLQELSVSDNQLASLP-ALPS-ELCKLWAYN-NQLTSLPMLPSGLQELSVSDNQLAS 195
Query: 135 IKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVI 194
+ LP N+L P + L+ L V S NR+ S+P ++K
Sbjct: 196 LPTLPSELYKLWAY------NNRLTSLPALPSGLKELIV---SGNRLTSLPVLPSELK-- 244
Query: 195 EMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254
E+ ++ N++ + S + L + R + + +P ++ S+ T+N+EGN +
Sbjct: 245 ELMVSGNRLTSLPMLPSGLLSLSVYRNQ-----LTRLPESLIHLSSETTVNLEGNPLSER 299
Query: 255 AFQQL 259
Q L
Sbjct: 300 TLQAL 304
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 34/173 (19%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL 115
V+ S G K P E++ +L D+ N IS+ D Q L +L NKI +
Sbjct: 37 VVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 116 -PKDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVL 174
K L KL+ + + N + E+P P+ L L+ D
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLVEIPP-------------------NLPSSLVELRIHD-- 132
Query: 175 DLSFNRIESIPDGI----GKMKVIEMNLNKNQICHISPDISECVRLKILRLEE 223
NRI +P G+ M IEM N + P + ++L LR+ E
Sbjct: 133 ----NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL-LKSLTFDQNKIESL 115
++NL GF E P E+ + L+ +D+ N ++ P + + Q+ LKSL +N I S+
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Query: 116 PKDI 119
K +
Sbjct: 600 EKKV 603
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL-LKSLTFDQNKIESL 115
++NL GF E P E+ + L+ +D+ N ++ P + + Q+ LKSL +N I S+
Sbjct: 545 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 604
Query: 116 PKDI 119
K +
Sbjct: 605 EKKV 608
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL-LKSLTFDQNKIESL 115
++NL GF E P E+ + L+ +D+ N ++ P + + Q+ LKSL +N I S+
Sbjct: 550 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 609
Query: 116 PKDI 119
K +
Sbjct: 610 EKKV 613
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFD 108
F++ + V++L P + + L+ L + NK+++ P + L L D
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD 143
Query: 109 QNKIESLPKDIGTLEKLENVS 129
QN+++S+P G ++L +++
Sbjct: 144 QNQLKSIPH--GAFDRLSSLT 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLT---FDQNKIESL 115
+L F FP+ L+ LD+S+ +I ++ +YQ L L+ N I+SL
Sbjct: 44 HLGSYSFFSFPE--------LQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 93
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHL 171
+ +L+KL + N ++ P Q K P NL +L
Sbjct: 94 ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 172 DVLDLSFNRIESI 184
+ LDLS N+I+SI
Sbjct: 154 EHLDLSSNKIQSI 166
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 163 TVLFNLQHLDV---LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
TVL +L+ L + LDLS NR+ ++P + ++ +E+ + ++ RL+ L
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 513
Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGN 249
L N L +A +++ + LN++GN
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 163 TVLFNLQHLDV---LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
TVL +L+ L + LDLS NR+ ++P + ++ +E+ + ++ RL+ L
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 513
Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGN 249
L N L +A +++ + LN++GN
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 24/93 (25%)
Query: 71 EMNELKAVLRTLDISQNKISK-------------FPLDLASYQL-----------LKSLT 106
EM L+ LDISQN +S L+++S L +K L
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427
Query: 107 FDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
NKI+S+PK + LE L+ ++ N +K +P
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 171 LDVLDLSFNRIESIPDGIGKMKVI-EMNLNKNQICHISPD 209
+ VLDL N+I+SIP + K++ + E+N+ NQ+ + PD
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV-PD 461
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 156 NQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI 188
N++ P + L+ L L+++ N+++S+PDGI
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 50 ETAKKTGVINLSHQGFKEFPDEMNELKAV-LRTLDISQNKISKFPLDLASYQLLKSLTFD 108
+T K + + +EFP + K V L LD NK+ + L L D
Sbjct: 545 DTGPKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLD 603
Query: 109 QNKIESLPKDIGTL-EKLENVSGNCNLIKELP 139
N+IE +P+D +++E + + N +K +P
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 155 QNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG--IGKMKVIEMNLNKNQICHISPD 209
QN L + +F NL L+VLDLS+N I ++ D +G + E+ L+ NQ+ + PD
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PD 388
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 155 QNQLNKFP-TVLFNLQHLDVLDLSFNRIESIPDGI 188
QN++NK + L HL L L N+++S+PDGI
Sbjct: 308 QNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGI 342
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 75 LKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV 128
L ++ LD+ N+I P D+ Q L+ L N+++S+P G ++L ++
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD--GVFDRLTSL 499
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 26/116 (22%)
Query: 50 ETAKKTGVINLSHQGFKEF--PDEMNELKAVLRTLDISQNKI-------------SKFPL 94
T K+ + L G K F M + + L TLD+S N + S L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 95 DLASYQL-----------LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
+L+S L +K L N+I S+PKD+ L+ L+ ++ N +K +P
Sbjct: 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 73 NELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGN 131
NEL++++ D S ++ P DL K+L+ QN I L DI L +L + +
Sbjct: 30 NELESMV---DYSNRNLTHVPKDLPPRT--KALSLSQNSISELRMPDISFLSELRVLRLS 84
Query: 132 CNLIKELPXXXXXXXXXXXXXXXQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP-DGIGK 190
N I+ L F LFN Q L+ LD+S NR+++I +
Sbjct: 85 HNRIRSL---------------------DFHVFLFN-QDLEYLDVSHNRLQNISCCPMAS 122
Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLE 222
++ ++++ N + + + +L L L
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLP 116
I L K P LR +D+S N+IS+ D + L SL NKI LP
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 117 KDI 119
K +
Sbjct: 97 KSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLP 116
I L K P LR +D+S N+IS+ D + L SL NKI LP
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 117 KDI 119
K +
Sbjct: 97 KSL 99
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 156 NQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISP 208
NQ+N T L NL L L N+I I +IE++L NQI +SP
Sbjct: 167 NQVNDL-TPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSP 218
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 32 EGTIFVLKMGNSATKRHFETAKKT--------GVINLSHQGFKEFPDEMNELKAVLRTLD 83
EG + V+ G +T+ F K G++NL+ FK+ P E+K L+
Sbjct: 137 EGEVXVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEFLE 196
Query: 84 ISQNKISKFPLD 95
+K+ K P+D
Sbjct: 197 KELSKVKK-PVD 207
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 156 NQLNKFPTVLFNLQHLDVLDLSFNRIESI 184
NQ P L N +HL ++DLS NRI ++
Sbjct: 41 NQFTLVPKELSNYKHLTLIDLSNNRISTL 69
>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase
pdb|1DCI|B Chain B, Dienoyl-Coa Isomerase
pdb|1DCI|C Chain C, Dienoyl-Coa Isomerase
Length = 275
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 115 LPKDIGTLEKLENVSGNCNLIKEL 138
L D+GTL++L V GN +L+ EL
Sbjct: 149 LAADVGTLQRLPKVIGNRSLVNEL 172
>pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
pdb|2J4R|B Chain B, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
Length = 308
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 32 EGTIFVLKMGNSATKRHFETAKKT--------GVINLSHQGFKEFPDEMNELKAVLRTLD 83
EG + V+ G +T+ F K G++NL+ FK+ P E+K L+
Sbjct: 132 EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEFLE 191
Query: 84 ISQNKISKFPLD 95
+K+ K P+D
Sbjct: 192 KELSKVKK-PVD 202
>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|B Chain B, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|C Chain C, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
Length = 296
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 115 LPKDIGTLEKLENVSGNCNLIKEL 138
L D+GTL++L V GN +L+ EL
Sbjct: 176 LAADVGTLQRLPKVIGNQSLVNEL 199
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 32 EGTIFVLKMGNSATKRHFETAKKT--------GVINLSHQGFKEFPDEMNELKAVLRTLD 83
EG + V+ G +T+ F K G++NL+ FK+ P E+K L+
Sbjct: 137 EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEFLE 196
Query: 84 ISQNKISKFPLD 95
+K+ K P+D
Sbjct: 197 KELSKVKK-PVD 207
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 31 IEGTIFVLKMGNSATKRH--FETAKKTGVINLSHQGFK-----EFPDEMNELKAVLRTLD 83
+E + + N K H FE V N S QG +F D ++ AV + D
Sbjct: 80 VESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGD 139
Query: 84 ISQNKISKFPLD 95
+ KIS F +D
Sbjct: 140 VRNYKISNFTID 151
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 41 GNSATKRHFETAKKTGVINLSHQGFK-----EFPDEMNELKAVLRTLDISQNKISKFPLD 95
G+ R FE V N S QG +F D ++ AV + D+ KIS F +D
Sbjct: 93 GDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTID 152
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 156 NQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
N+L + P +F + L L+L+ N+++S+PDGI
Sbjct: 180 NKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,749,410
Number of Sequences: 62578
Number of extensions: 235979
Number of successful extensions: 806
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 205
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)