Query psy3567
Match_columns 277
No_of_seqs 150 out of 2573
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 19:56:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 100.0 8.5E-28 2.9E-32 205.7 19.7 221 15-252 81-314 (328)
2 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-27 4.4E-32 203.3 17.2 224 15-255 50-284 (313)
3 3rgz_A Protein brassinosteroid 100.0 4.3E-27 1.5E-31 222.5 22.2 240 15-256 394-721 (768)
4 3rgz_A Protein brassinosteroid 100.0 2.4E-27 8.3E-32 224.3 20.3 257 16-274 369-724 (768)
5 4fcg_A Uncharacterized protein 100.0 2.1E-27 7.4E-32 203.2 17.8 208 52-261 80-299 (328)
6 2z66_A Variable lymphocyte rec 99.9 1.9E-26 6.7E-31 195.2 17.9 224 15-254 28-263 (306)
7 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-27 2E-31 199.2 13.8 222 13-252 74-304 (313)
8 4eco_A Uncharacterized protein 99.9 2.1E-26 7E-31 213.6 16.8 230 13-246 247-543 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 4.5E-26 1.5E-30 216.3 19.3 232 13-248 489-785 (876)
10 4eco_A Uncharacterized protein 99.9 7E-27 2.4E-31 216.7 12.7 204 46-252 199-446 (636)
11 3zyj_A Leucine-rich repeat-con 99.9 2.7E-25 9.2E-30 197.5 20.7 220 33-254 64-294 (440)
12 1xku_A Decorin; proteoglycan, 99.9 6.1E-25 2.1E-29 188.0 21.3 231 16-253 32-277 (330)
13 3zyi_A Leucine-rich repeat-con 99.9 2.8E-25 9.7E-30 198.0 20.0 234 19-254 58-305 (452)
14 3o6n_A APL1; leucine-rich repe 99.9 2E-25 6.8E-30 195.3 17.7 110 142-255 244-355 (390)
15 1ozn_A Reticulon 4 receptor; N 99.9 9.5E-25 3.3E-29 183.0 18.7 202 52-254 31-240 (285)
16 4ecn_A Leucine-rich repeat pro 99.9 9E-25 3.1E-29 207.4 20.6 236 14-252 514-819 (876)
17 2ft3_A Biglycan; proteoglycan, 99.9 5.9E-25 2E-29 188.3 17.6 233 17-252 35-307 (332)
18 4fmz_A Internalin; leucine ric 99.9 2.2E-24 7.4E-29 185.7 20.8 233 14-253 65-325 (347)
19 2z80_A TOLL-like receptor 2, v 99.9 4.8E-26 1.6E-30 196.7 10.4 219 48-268 71-332 (353)
20 1xku_A Decorin; proteoglycan, 99.9 2.6E-24 8.9E-29 184.1 20.9 232 15-253 52-307 (330)
21 3oja_B Anopheles plasmodium-re 99.9 6.8E-25 2.3E-29 202.1 18.0 110 142-255 250-361 (597)
22 2id5_A Lingo-1, leucine rich r 99.9 6.5E-25 2.2E-29 196.8 17.4 240 15-255 32-312 (477)
23 1p9a_G Platelet glycoprotein I 99.9 1.2E-24 4.1E-29 183.0 17.4 200 49-254 6-210 (290)
24 4fmz_A Internalin; leucine ric 99.9 4.3E-24 1.5E-28 183.8 21.1 230 13-252 108-346 (347)
25 2id5_A Lingo-1, leucine rich r 99.9 1.3E-24 4.3E-29 195.0 17.7 243 11-254 52-335 (477)
26 3v47_A TOLL-like receptor 5B a 99.9 2.1E-24 7.1E-29 192.3 19.0 132 123-255 275-411 (455)
27 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5.1E-29 193.2 18.0 238 15-254 30-386 (455)
28 2ft3_A Biglycan; proteoglycan, 99.9 2.8E-24 9.4E-29 184.1 18.5 233 15-250 54-331 (332)
29 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-24 4.2E-29 200.5 17.0 241 10-254 302-560 (606)
30 1wwl_A Monocyte differentiatio 99.9 1.9E-25 6.5E-30 189.8 10.2 233 15-254 43-311 (312)
31 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-25 1.2E-29 188.5 11.5 216 14-253 33-251 (317)
32 2z66_A Variable lymphocyte rec 99.9 1.6E-24 5.6E-29 183.4 15.3 203 53-256 28-240 (306)
33 1h6u_A Internalin H; cell adhe 99.9 4.2E-24 1.4E-28 181.2 17.8 198 48-256 36-234 (308)
34 3oja_B Anopheles plasmodium-re 99.9 4E-24 1.4E-28 197.0 18.1 238 15-257 51-342 (597)
35 3o6n_A APL1; leucine-rich repe 99.9 5.7E-24 2E-28 186.0 17.9 238 15-257 45-336 (390)
36 3oja_A Leucine-rich immune mol 99.9 9.6E-25 3.3E-29 196.3 12.3 217 13-253 32-251 (487)
37 2z62_A TOLL-like receptor 4, v 99.9 7.8E-24 2.7E-28 176.7 16.7 209 53-262 28-249 (276)
38 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-23 1.3E-27 184.3 21.6 205 14-253 41-247 (457)
39 3t6q_A CD180 antigen; protein- 99.9 1.7E-23 5.8E-28 192.8 19.6 237 15-252 33-338 (606)
40 2o6q_A Variable lymphocyte rec 99.9 4.4E-23 1.5E-27 171.6 19.8 198 54-255 17-221 (270)
41 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-23 9E-28 189.4 19.8 200 49-255 306-513 (549)
42 3t6q_A CD180 antigen; protein- 99.9 3.3E-23 1.1E-27 190.9 20.6 238 13-253 276-537 (606)
43 1wwl_A Monocyte differentiatio 99.9 1.8E-23 6.3E-28 177.5 17.1 200 14-227 94-309 (312)
44 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-23 1.1E-27 193.6 19.9 215 47-262 399-634 (680)
45 1o6v_A Internalin A; bacterial 99.9 7.9E-23 2.7E-27 182.9 21.4 196 49-254 173-390 (466)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.6E-23 1.9E-27 187.9 20.8 130 123-254 353-512 (562)
47 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-23 7.3E-28 174.8 16.5 196 56-255 14-217 (285)
48 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-23 1.1E-27 187.8 18.7 226 16-255 248-484 (520)
49 3zyj_A Leucine-rich repeat-con 99.9 2.3E-23 8E-28 185.0 16.7 203 53-256 64-272 (440)
50 1o6v_A Internalin A; bacterial 99.9 9.1E-23 3.1E-27 182.5 20.0 231 14-253 67-345 (466)
51 3zyi_A Leucine-rich repeat-con 99.9 2.9E-23 9.8E-28 185.0 16.5 202 53-255 75-282 (452)
52 3g06_A SSPH2 (leucine-rich rep 99.9 9.3E-23 3.2E-27 187.6 20.1 226 15-260 61-305 (622)
53 2z7x_B TOLL-like receptor 1, v 99.9 3.5E-23 1.2E-27 187.5 16.4 116 15-135 21-150 (520)
54 1jl5_A Outer protein YOPM; leu 99.9 1.9E-22 6.4E-27 179.8 20.4 197 17-227 73-290 (454)
55 2z62_A TOLL-like receptor 4, v 99.9 9E-23 3.1E-27 170.2 16.1 199 15-227 28-237 (276)
56 2xwt_C Thyrotropin receptor; s 99.9 7.4E-23 2.5E-27 167.2 14.9 192 53-249 31-236 (239)
57 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-22 9.5E-27 182.6 20.3 173 77-256 310-490 (549)
58 1h6u_A Internalin H; cell adhe 99.9 2E-22 6.7E-27 170.9 17.6 189 15-227 41-230 (308)
59 1jl5_A Outer protein YOPM; leu 99.9 2.7E-22 9.3E-27 178.7 19.2 223 14-253 152-410 (454)
60 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-22 1.3E-26 186.3 21.0 235 15-250 25-307 (680)
61 3vq2_A TLR4, TOLL-like recepto 99.9 6.8E-23 2.3E-27 188.8 15.4 234 14-253 284-535 (606)
62 1p9a_G Platelet glycoprotein I 99.9 3.6E-22 1.2E-26 167.8 18.5 196 14-227 9-208 (290)
63 2z80_A TOLL-like receptor 2, v 99.9 2.9E-23 1E-27 179.2 11.3 201 53-253 52-291 (353)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6E-22 2E-26 181.1 20.4 86 167-253 351-442 (562)
65 2o6q_A Variable lymphocyte rec 99.9 1.4E-21 4.7E-26 162.6 19.7 195 16-227 17-218 (270)
66 2z63_A TOLL-like receptor 4, v 99.9 8.3E-23 2.8E-27 186.7 13.5 159 96-255 369-534 (570)
67 3rfs_A Internalin B, repeat mo 99.9 1.6E-21 5.3E-26 162.4 19.5 175 50-227 38-218 (272)
68 4glp_A Monocyte differentiatio 99.9 2.7E-22 9.2E-27 170.2 15.1 200 50-254 88-309 (310)
69 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-21 5.1E-26 174.1 20.5 184 12-227 61-246 (457)
70 3cvr_A Invasion plasmid antige 99.9 3E-22 1E-26 182.3 16.0 187 53-261 59-252 (571)
71 2z63_A TOLL-like receptor 4, v 99.9 6.5E-22 2.2E-26 180.8 17.3 224 11-255 278-510 (570)
72 3j0a_A TOLL-like receptor 5; m 99.9 5.5E-22 1.9E-26 189.5 15.9 238 15-253 24-352 (844)
73 3cvr_A Invasion plasmid antige 99.9 8.1E-22 2.8E-26 179.5 16.2 187 16-238 60-253 (571)
74 3rfs_A Internalin B, repeat mo 99.9 8.2E-22 2.8E-26 164.1 14.8 213 54-271 20-239 (272)
75 3o53_A Protein LRIM1, AGAP0063 99.9 6.6E-22 2.3E-26 168.3 14.5 197 47-253 28-228 (317)
76 4glp_A Monocyte differentiatio 99.9 1E-22 3.5E-27 172.8 9.3 197 52-253 63-286 (310)
77 2xwt_C Thyrotropin receptor; s 99.9 6.2E-22 2.1E-26 161.7 12.0 186 64-255 22-221 (239)
78 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-21 5.2E-26 186.4 16.6 205 47-254 284-541 (844)
79 3oja_A Leucine-rich immune mol 99.9 1.8E-21 6.3E-26 174.9 14.2 201 43-253 20-228 (487)
80 2ca6_A RAN GTPase-activating p 99.9 5.4E-23 1.8E-27 179.6 3.7 231 14-255 31-319 (386)
81 3m19_A Variable lymphocyte rec 99.9 3.3E-20 1.1E-24 152.6 18.8 172 53-227 14-192 (251)
82 1h6t_A Internalin B; cell adhe 99.9 2.3E-20 7.7E-25 157.0 18.0 171 49-227 42-213 (291)
83 3m19_A Variable lymphocyte rec 99.9 2.2E-20 7.5E-25 153.7 16.7 175 77-254 14-194 (251)
84 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-20 1.4E-24 170.5 20.4 120 15-134 52-184 (635)
85 1h6t_A Internalin B; cell adhe 99.9 1.8E-20 6.3E-25 157.5 16.3 189 58-257 29-218 (291)
86 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-20 6.1E-25 172.5 16.4 208 14-237 80-306 (622)
87 3goz_A Leucine-rich repeat-con 99.8 5.1E-21 1.7E-25 165.7 8.4 230 15-254 22-299 (362)
88 1z7x_W Ribonuclease inhibitor; 99.8 6.7E-22 2.3E-26 176.3 1.6 208 47-254 164-413 (461)
89 1m9s_A Internalin B; cell inva 99.8 4.7E-20 1.6E-24 169.3 13.6 171 49-227 39-210 (605)
90 1xeu_A Internalin C; cellular 99.8 3.8E-20 1.3E-24 153.3 11.7 168 51-227 17-185 (263)
91 2ast_B S-phase kinase-associat 99.8 5.7E-21 1.9E-25 163.5 6.0 217 17-253 49-285 (336)
92 1m9s_A Internalin B; cell inva 99.8 1.6E-19 5.4E-24 165.9 15.1 168 77-253 43-211 (605)
93 4g8a_A TOLL-like receptor 4; l 99.8 8.5E-19 2.9E-23 161.7 18.3 245 15-261 328-590 (635)
94 1xeu_A Internalin C; cellular 99.8 1.6E-19 5.5E-24 149.6 11.1 154 48-209 36-190 (263)
95 2o6s_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 142.5 11.9 175 56-240 10-190 (208)
96 2ca6_A RAN GTPase-activating p 99.8 1.9E-20 6.6E-25 163.4 4.8 209 11-227 56-316 (386)
97 2ast_B S-phase kinase-associat 99.8 7.4E-20 2.5E-24 156.5 6.6 225 15-259 70-313 (336)
98 3goz_A Leucine-rich repeat-con 99.8 5.8E-20 2E-24 159.1 5.6 218 20-251 3-265 (362)
99 1z7x_W Ribonuclease inhibitor; 99.8 2.4E-20 8.2E-25 166.2 3.3 238 15-253 56-384 (461)
100 4ay9_X Follicle-stimulating ho 99.8 2.6E-18 8.9E-23 148.0 13.7 193 53-249 30-233 (350)
101 4ezg_A Putative uncharacterize 99.8 1.9E-18 6.5E-23 136.8 11.8 148 77-252 44-194 (197)
102 4ezg_A Putative uncharacterize 99.8 4.3E-18 1.5E-22 134.8 13.3 152 49-227 40-194 (197)
103 2xot_A Amphoterin-induced prot 99.8 1.5E-18 5.3E-23 150.1 11.5 169 56-227 21-202 (361)
104 1dce_A Protein (RAB geranylger 99.8 7.4E-21 2.5E-25 173.6 -3.4 175 50-227 346-546 (567)
105 4ay9_X Follicle-stimulating ho 99.8 9.5E-18 3.3E-22 144.5 15.8 199 47-249 48-256 (350)
106 3e6j_A Variable lymphocyte rec 99.8 1.8E-17 6.3E-22 134.3 16.0 148 78-227 20-172 (229)
107 2v9t_B SLIT homolog 2 protein 99.8 1.9E-17 6.5E-22 133.4 15.3 147 79-227 13-165 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-17 8.5E-22 132.7 15.8 147 79-227 13-166 (220)
109 3e6j_A Variable lymphocyte rec 99.8 3E-17 1E-21 133.0 16.3 147 56-205 22-173 (229)
110 2xot_A Amphoterin-induced prot 99.8 9.4E-18 3.2E-22 145.2 13.6 173 78-254 19-204 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 4.4E-17 1.5E-21 131.3 15.3 146 56-204 14-165 (220)
112 4b8c_D Glucose-repressible alc 99.7 8.4E-19 2.9E-23 164.6 5.7 220 15-252 173-404 (727)
113 2o6s_A Variable lymphocyte rec 99.7 7E-17 2.4E-21 128.8 15.7 173 79-261 9-187 (208)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 6.2E-17 2.1E-21 130.4 15.0 146 56-204 14-166 (220)
115 1dce_A Protein (RAB geranylger 99.7 1.5E-19 5.2E-24 165.0 -3.9 175 77-254 349-548 (567)
116 4b8c_D Glucose-repressible alc 99.7 4.2E-18 1.4E-22 159.8 3.9 189 53-249 173-369 (727)
117 2ell_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 123.9 9.8 132 53-186 24-164 (168)
118 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.2E-21 122.1 11.2 109 77-186 24-137 (168)
119 3ogk_B Coronatine-insensitive 99.6 3.3E-17 1.1E-21 150.4 1.6 118 14-131 111-251 (592)
120 1a9n_A U2A', U2A'; complex (nu 99.6 3.7E-16 1.3E-20 121.4 6.9 132 49-182 15-153 (176)
121 1w8a_A SLIT protein; signaling 99.6 3E-15 1E-19 117.9 11.9 123 103-227 11-139 (192)
122 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 5E-20 114.6 8.9 123 123-248 17-149 (149)
123 2wfh_A SLIT homolog 2 protein 99.6 3.8E-15 1.3E-19 117.4 11.6 124 56-182 13-139 (193)
124 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.7E-20 113.3 10.0 108 77-185 17-129 (149)
125 1w8a_A SLIT protein; signaling 99.6 3.7E-15 1.2E-19 117.4 10.9 124 56-182 11-139 (192)
126 3ogk_B Coronatine-insensitive 99.6 2.4E-16 8.2E-21 144.6 4.7 232 14-247 72-326 (592)
127 1a9n_A U2A', U2A'; complex (nu 99.6 1.8E-15 6.2E-20 117.4 8.8 130 121-253 17-154 (176)
128 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 113.7 13.2 123 103-227 13-139 (193)
129 3sb4_A Hypothetical leucine ri 99.5 2.7E-14 9.3E-19 121.8 10.9 98 145-245 225-327 (329)
130 2o6r_A Variable lymphocyte rec 99.5 8.4E-14 2.9E-18 108.0 12.5 126 55-183 9-138 (177)
131 1ds9_A Outer arm dynein; leuci 99.5 1.3E-16 4.6E-21 126.3 -4.4 133 118-255 43-188 (198)
132 1ds9_A Outer arm dynein; leuci 99.5 3.2E-16 1.1E-20 124.1 -2.5 134 16-160 19-154 (198)
133 2o6r_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 105.6 13.5 125 103-253 10-138 (177)
134 2p1m_B Transport inhibitor res 99.5 1.1E-15 3.7E-20 140.2 -1.6 229 15-246 66-345 (594)
135 2p1m_B Transport inhibitor res 99.5 1E-15 3.5E-20 140.4 -2.1 226 14-255 104-388 (594)
136 3sb4_A Hypothetical leucine ri 99.4 2.7E-13 9.2E-18 115.6 9.9 204 14-221 48-328 (329)
137 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 100.2 11.0 101 125-227 11-115 (170)
138 2r9u_A Variable lymphocyte rec 99.4 2.3E-12 7.9E-17 99.7 10.1 103 56-183 15-119 (174)
139 2r9u_A Variable lymphocyte rec 99.4 5.9E-12 2E-16 97.4 11.9 105 103-209 15-123 (174)
140 3g39_A Variable lymphocyte rec 99.4 7.1E-12 2.4E-16 96.5 11.5 101 80-182 12-115 (170)
141 4fdw_A Leucine rich hypothetic 99.3 5.6E-11 1.9E-15 103.9 14.3 195 47-250 174-381 (401)
142 3un9_A NLR family member X1; l 99.3 2.9E-13 1E-17 117.3 -1.2 179 76-255 71-286 (372)
143 3un9_A NLR family member X1; l 99.2 1.3E-12 4.4E-17 113.2 1.7 152 53-204 72-252 (372)
144 4fdw_A Leucine rich hypothetic 99.2 3E-10 1E-14 99.3 15.3 189 55-252 159-358 (401)
145 2ifg_A High affinity nerve gro 99.1 3.6E-10 1.2E-14 96.8 10.8 102 56-159 11-116 (347)
146 2ifg_A High affinity nerve gro 99.1 4.9E-10 1.7E-14 95.9 10.4 101 126-227 11-116 (347)
147 2ra8_A Uncharacterized protein 98.8 6.3E-09 2.1E-13 89.5 7.1 169 77-250 139-341 (362)
148 1io0_A Tropomodulin; LRR prote 98.8 1.5E-09 5.2E-14 84.6 1.8 115 141-255 31-167 (185)
149 2ra8_A Uncharacterized protein 98.7 2.6E-09 8.9E-14 91.9 2.6 183 77-261 107-329 (362)
150 1io0_A Tropomodulin; LRR prote 98.7 5.7E-09 1.9E-13 81.3 3.6 90 46-136 29-136 (185)
151 4gt6_A Cell surface protein; l 98.3 1E-05 3.5E-10 70.2 14.4 83 165-252 284-370 (394)
152 4fs7_A Uncharacterized protein 98.2 1.1E-05 3.7E-10 70.1 10.8 193 47-249 156-376 (394)
153 4fs7_A Uncharacterized protein 98.2 2.3E-05 7.8E-10 68.0 12.6 127 47-177 65-216 (394)
154 3rw6_A Nuclear RNA export fact 98.1 1.2E-06 4.1E-11 71.8 2.7 59 77-136 170-233 (267)
155 4gt6_A Cell surface protein; l 98.0 0.00014 4.9E-09 62.9 13.9 125 119-251 261-390 (394)
156 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.9E-10 66.0 5.4 75 168-244 169-256 (267)
157 1pgv_A TMD-1, tropomodulin TMD 97.8 1.7E-05 5.8E-10 61.7 3.8 111 143-253 38-171 (197)
158 4h09_A Hypothetical leucine ri 97.7 0.0023 7.8E-08 54.9 16.7 79 167-249 261-343 (379)
159 1pgv_A TMD-1, tropomodulin TMD 97.6 4.7E-05 1.6E-09 59.2 4.2 66 47-113 35-111 (197)
160 3e4g_A ATP synthase subunit S, 97.3 0.00019 6.5E-09 54.7 4.2 83 100-182 61-153 (176)
161 3rfe_A Platelet glycoprotein I 97.2 0.00081 2.8E-08 48.7 6.4 54 173-227 12-68 (130)
162 4h09_A Hypothetical leucine ri 97.2 0.006 2.1E-07 52.2 13.0 58 48-109 109-167 (379)
163 3rfe_A Platelet glycoprotein I 97.2 0.00046 1.6E-08 50.0 4.8 55 56-113 11-68 (130)
164 3e4g_A ATP synthase subunit S, 97.2 0.00024 8.1E-09 54.2 3.3 80 146-225 61-150 (176)
165 2lz0_A Uncharacterized protein 49.1 30 0.001 23.0 4.7 37 210-248 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=8.5e-28 Score=205.71 Aligned_cols=221 Identities=23% Similarity=0.313 Sum_probs=168.4
Q ss_pred CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL 94 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 94 (277)
+++++|++++|.++ .+|+. +.++++|++|++++|.++.+|..+..+ ++|++|++++|++..+|.
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~--------------l~~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQ--------------AFRLSHLQHMTIDAAGLMELPDTMQQF-AGLETLTLARNPLRALPA 144 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSC--------------GGGGTTCSEEEEESSCCCCCCSCGGGG-TTCSEEEEESCCCCCCCG
T ss_pred cceeEEEccCCCch-hcChh--------------hhhCCCCCEEECCCCCccchhHHHhcc-CCCCEEECCCCccccCcH
Confidence 46777777777776 44443 355778888888888888888777666 788888888888888887
Q ss_pred cccccCCCcEEeccCCcCc-ccCcccc---------CcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccc
Q psy3567 95 DLASYQLLKSLTFDQNKIE-SLPKDIG---------TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV 164 (277)
Q Consensus 95 ~~~~l~~L~~L~l~~~~i~-~~~~~~~---------~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~ 164 (277)
.+.++++|++|++++|.+. .+|..+. .+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 8888888888888886443 5555544 37888888888888888887788888888888888888888777
Q ss_pred cCCCCCCCEEEccCCCCc-ccCchhccce-eeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCc
Q psy3567 165 LFNLQHLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNV 241 (277)
Q Consensus 165 l~~~~~L~~L~l~~n~l~-~l~~~~~~~~-l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 241 (277)
++.+++|++|++++|.+. .+|..++.++ +++|++++|++. .+|..+..+++|++|++++|.+. +.+|..+.+++++
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~iP~~l~~L~~L 303 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPAN 303 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC-CCCCGGGGGSCTT
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch-hhccHHHhhccCc
Confidence 777888888888887665 5676666654 888888887654 67777888888888888888877 6888888888888
Q ss_pred cEEEcCCCeee
Q psy3567 242 CTLNVEGNLFE 252 (277)
Q Consensus 242 ~~l~l~~n~~~ 252 (277)
+.+++..+.+.
T Consensus 304 ~~l~l~~~~~~ 314 (328)
T 4fcg_A 304 CIILVPPHLQA 314 (328)
T ss_dssp CEEECCGGGSC
T ss_pred eEEeCCHHHHH
Confidence 88888776543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.3e-27 Score=203.34 Aligned_cols=224 Identities=23% Similarity=0.295 Sum_probs=186.0
Q ss_pred CCceeEecCCCCcCC--CCCCceeeeccCCcchhHhhhccCccCEEEeec-CCCC-cCChhHHHhhccccEEEccCCCCC
Q psy3567 15 PSKLTLLLPGKKNRG--LIEGTIFVLKMGNSATKRHFETAKKTGVINLSH-QGFK-EFPDEMNELKAVLRTLDISQNKIS 90 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~-~~i~-~~~~~~~~~~~~L~~L~l~~~~i~ 90 (277)
.++++|++++|.+.+ .+|+ .|..++.|++|++++ |++. .+|+.+..+ ++|++|++++|++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~--------------~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~ 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS--------------SLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVS 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG--------------GGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCE
T ss_pred ceEEEEECCCCCccCCcccCh--------------hHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeC
Confidence 467778888888877 5444 467788999999995 7777 677777666 88999999999988
Q ss_pred -cCCccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCC-CCCEEEccCCCCc-cCcccc
Q psy3567 91 -KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLH-NLKHLSLSQNQLN-KFPTVL 165 (277)
Q Consensus 91 -~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~-~L~~L~l~~n~l~-~~~~~l 165 (277)
.+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+. .+|..+
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 77888899999999999999988 56888889999999999999987 7788888887 8999999999888 667777
Q ss_pred CCCCCCCEEEccCCCCcc-cCchhccce-eeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567 166 FNLQHLDVLDLSFNRIES-IPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCT 243 (277)
Q Consensus 166 ~~~~~L~~L~l~~n~l~~-l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 243 (277)
..+. |++|++++|.++. .|..+..++ +++|++++|+++..+..+..+++|++|++++|.++ +.+|..+..+++|++
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHS 272 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCE
T ss_pred hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCE
Confidence 7776 9999999998884 455565554 88999999999876666788899999999999998 678888999999999
Q ss_pred EEcCCCeeeecc
Q psy3567 244 LNVEGNLFEMKA 255 (277)
Q Consensus 244 l~l~~n~~~~~~ 255 (277)
|++++|.+++..
T Consensus 273 L~Ls~N~l~~~i 284 (313)
T 1ogq_A 273 LNVSFNNLCGEI 284 (313)
T ss_dssp EECCSSEEEEEC
T ss_pred EECcCCcccccC
Confidence 999999988643
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.3e-27 Score=222.53 Aligned_cols=240 Identities=24% Similarity=0.353 Sum_probs=168.5
Q ss_pred CCceeEecCCCCcCCCCCCce------eeeccCCcch----hHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEE
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTI------FVLKMGNSAT----KRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLD 83 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~ 83 (277)
+++++|++++|.+.+.+|..+ ..+.+.++.+ +..+..+++|++|++++|++. .+|..+..+ ++|++|+
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~ 472 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLI 472 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEE
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEE
Confidence 456666666666666555333 3444555433 356667777777777777776 555555544 6777777
Q ss_pred ccCCCCC-cCCccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCCCCCEEEccCCCCc-
Q psy3567 84 ISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN- 159 (277)
Q Consensus 84 l~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~- 159 (277)
+++|++. .+|..+.++++|++|++++|++. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 7777776 55666777777777777777776 45667777777777777777776 56777777777777777777665
Q ss_pred cCccc----------------------------------------------------------------------cCCCC
Q psy3567 160 KFPTV----------------------------------------------------------------------LFNLQ 169 (277)
Q Consensus 160 ~~~~~----------------------------------------------------------------------l~~~~ 169 (277)
.+|.. ++.++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 33332 22345
Q ss_pred CCCEEEccCCCCc-ccCchhccce-eeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567 170 HLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV 246 (277)
Q Consensus 170 ~L~~L~l~~n~l~-~l~~~~~~~~-l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 246 (277)
+|+.|++++|.++ .+|..++.++ ++.|++++|+++ .+|..++.+++|+.||+++|+++ +.+|..+..++.|++|++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEEC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEEC
Confidence 6777888888777 5777777764 788888888887 77777888888888888888887 678888888888888888
Q ss_pred CCCeeeeccc
Q psy3567 247 EGNLFEMKAF 256 (277)
Q Consensus 247 ~~n~~~~~~~ 256 (277)
++|++++..+
T Consensus 712 s~N~l~g~iP 721 (768)
T 3rgz_A 712 SNNNLSGPIP 721 (768)
T ss_dssp CSSEEEEECC
T ss_pred cCCcccccCC
Confidence 8888877543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.4e-27 Score=224.25 Aligned_cols=257 Identities=25% Similarity=0.340 Sum_probs=210.4
Q ss_pred CceeEecCCCCcCCCCCC--------ceeeeccCCcch----hHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEE
Q psy3567 16 SKLTLLLPGKKNRGLIEG--------TIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTL 82 (277)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~--------~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L 82 (277)
++++|++++|.+.|.+++ .+..+.+.++.+ +..+..+++|++|++++|+++ .+|..+..+ ++|++|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-CCCCEE
Confidence 566666666666555433 344555555433 467889999999999999988 667666666 899999
Q ss_pred EccCCCCC-cCCccccccCCCcEEeccCCcCc-ccCccccCcccCceeeccccccc-ccchhhhcCCCCCEEEccCCCCc
Q psy3567 83 DISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN 159 (277)
Q Consensus 83 ~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~ 159 (277)
++++|++. .+|..+..+++|++|++++|++. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+.
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 99999988 67888999999999999999998 56888999999999999999998 67888999999999999999998
Q ss_pred -cCccccCCCCCCCEEEccCCCCc-ccCchhcc-----------------------------------------------
Q psy3567 160 -KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGK----------------------------------------------- 190 (277)
Q Consensus 160 -~~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~----------------------------------------------- 190 (277)
.+|..++.+++|+.|++++|.++ .+|..++.
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 67888999999999999999887 56654321
Q ss_pred -----------------------c-eeeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEE
Q psy3567 191 -----------------------M-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLN 245 (277)
Q Consensus 191 -----------------------~-~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 245 (277)
. .++.|++++|+++ .+|..++.+++|+.|++++|.++ +.+|..+..+++|+.|+
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEE
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEE
Confidence 1 3678999999998 78889999999999999999999 89999999999999999
Q ss_pred cCCCeeeecc---------ccccccchhhhhhhhhccC
Q psy3567 246 VEGNLFEMKA---------FQQLDGYNNYMDSELQRSG 274 (277)
Q Consensus 246 l~~n~~~~~~---------~~~l~~~~~~~~~~~~~~~ 274 (277)
+++|.+++.. ++.++...|.+.+.+|..|
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 9999999753 3444555666666666544
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.1e-27 Score=203.21 Aligned_cols=208 Identities=21% Similarity=0.312 Sum_probs=187.6
Q ss_pred cCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecc
Q psy3567 52 AKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGN 131 (277)
Q Consensus 52 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~ 131 (277)
...++.|+++++.++.+|+.++.+ ++|++|++++|.+..+|..+.++++|++|++++|.+..+|..++.+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 478999999999999999998886 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-cccchhhh---------cCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccC
Q psy3567 132 CNLI-KELPLSFS---------KLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNK 200 (277)
Q Consensus 132 ~n~~-~~l~~~~~---------~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~ 200 (277)
+|.. ..+|..+. .+++|++|++++|.+..+|..++.+++|++|++++|.++.+|..++.++ +++|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 8654 46776654 4999999999999999999999999999999999999999998887774 99999999
Q ss_pred CccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccccccc
Q psy3567 201 NQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDG 261 (277)
Q Consensus 201 n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~ 261 (277)
|++. .+|..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+..++.+..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 8866 77888999999999999999988 799999999999999999999887755544433
No 6
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.9e-26 Score=195.22 Aligned_cols=224 Identities=18% Similarity=0.266 Sum_probs=191.3
Q ss_pred CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcC---ChhHHHhhccccEEEccCCCCCc
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEF---PDEMNELKAVLRTLDISQNKISK 91 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~i~~ 91 (277)
+++++|++++|.++. +|. ..|.++++|++|++++|.++.+ +..+... ++|++|++++|.+..
T Consensus 28 ~~l~~L~L~~n~l~~-i~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 28 SSATRLELESNKLQS-LPH-------------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT 92 (306)
T ss_dssp TTCCEEECCSSCCCC-CCT-------------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCSEEE
T ss_pred CCCCEEECCCCccCc-cCH-------------hHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCcccc
Confidence 466777777776652 222 2367899999999999999855 5666655 999999999999999
Q ss_pred CCccccccCCCcEEeccCCcCcccCc--cccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCcc--CccccC
Q psy3567 92 FPLDLASYQLLKSLTFDQNKIESLPK--DIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNK--FPTVLF 166 (277)
Q Consensus 92 ~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~--~~~~l~ 166 (277)
+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+... +..+..+++|++|++++|.+.. +|..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 99889999999999999999998764 788999999999999998855 4568899999999999999985 678888
Q ss_pred CCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCC-Ccc
Q psy3567 167 NLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSS-NVC 242 (277)
Q Consensus 167 ~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~ 242 (277)
.+++|++|++++|.++.+ |..+..+ ++++|++++|+++.++. .+..+++|+.|++++|.++ +..|..+..++ +|+
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLA 251 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC-BCSSSSCCCCCTTCC
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc-ccCHHHHHhhhccCC
Confidence 999999999999999976 5566665 49999999999998876 5888999999999999998 67778888884 999
Q ss_pred EEEcCCCeeeec
Q psy3567 243 TLNVEGNLFEMK 254 (277)
Q Consensus 243 ~l~l~~n~~~~~ 254 (277)
+|++++|++++.
T Consensus 252 ~L~L~~N~~~~~ 263 (306)
T 2z66_A 252 FLNLTQNDFACT 263 (306)
T ss_dssp EEECTTCCEECS
T ss_pred EEEccCCCeecc
Confidence 999999999864
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5.9e-27 Score=199.22 Aligned_cols=222 Identities=21% Similarity=0.304 Sum_probs=194.9
Q ss_pred CCCCceeEecCC-CCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCCCCC
Q psy3567 13 SSPSKLTLLLPG-KKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS 90 (277)
Q Consensus 13 ~~~~l~~l~l~~-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~i~ 90 (277)
..+.+++|++++ |.+.+.+|. .|.++++|++|++++|+++ .+|..+..+ ++|++|++++|.+.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~--------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPP--------------AIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALS 138 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCG--------------GGGGCTTCSEEEEEEECCEEECCGGGGGC-TTCCEEECCSSEEE
T ss_pred CCCCCCeeeCCCCCcccccCCh--------------hHhcCCCCCEEECcCCeeCCcCCHHHhCC-CCCCEEeCCCCccC
Confidence 357899999995 888877665 4577899999999999999 778777777 99999999999998
Q ss_pred -cCCccccccCCCcEEeccCCcCc-ccCccccCcc-cCceeeccccccc-ccchhhhcCCCCCEEEccCCCCcc-Ccccc
Q psy3567 91 -KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLE-KLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLNK-FPTVL 165 (277)
Q Consensus 91 -~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~-~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~l 165 (277)
.+|..+..+++|++|++++|++. .+|..+..+. .|++|++++|.+. .+|..+..+. |++|++++|.+.. .|..+
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence 77888999999999999999998 7788999998 9999999999998 6788888887 9999999999984 56778
Q ss_pred CCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccC-cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567 166 FNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCT 243 (277)
Q Consensus 166 ~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 243 (277)
..+++|++|++++|.++..+..+... ++++|++++|+++ .+|..+..+++|++|++++|.++ +.+|.. .++++|+.
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~-~~l~~L~~ 295 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GEIPQG-GNLQRFDV 295 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EECCCS-TTGGGSCG
T ss_pred hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc-ccCCCC-ccccccCh
Confidence 88999999999999998554445555 5999999999999 88888999999999999999998 677776 78899999
Q ss_pred EEcCCCeee
Q psy3567 244 LNVEGNLFE 252 (277)
Q Consensus 244 l~l~~n~~~ 252 (277)
+++++|+.-
T Consensus 296 l~l~~N~~l 304 (313)
T 1ogq_A 296 SAYANNKCL 304 (313)
T ss_dssp GGTCSSSEE
T ss_pred HHhcCCCCc
Confidence 999999743
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.1e-26 Score=213.58 Aligned_cols=230 Identities=23% Similarity=0.308 Sum_probs=140.5
Q ss_pred CCCCceeEecCCCCcCCCCCCce------eeeccCCcc------hhHhhhcc------CccCEEEeecCCCCcCCh--hH
Q psy3567 13 SSPSKLTLLLPGKKNRGLIEGTI------FVLKMGNSA------TKRHFETA------KKTGVINLSHQGFKEFPD--EM 72 (277)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~------~~~~l~~~------~~L~~L~l~~~~i~~~~~--~~ 72 (277)
..+++++|++++|.+.+.+|..+ ..+.+.++. ++..+..+ ++|++|++++|+++.+|+ .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 34678899999999988888644 556666664 44556665 888899999998888887 66
Q ss_pred HHhhccccEEEccCCCCC-cCCccccccCCCcEEeccCCcCcccCccccCccc-CceeecccccccccchhhhcCC--CC
Q psy3567 73 NELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEK-LENVSGNCNLIKELPLSFSKLH--NL 148 (277)
Q Consensus 73 ~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~n~~~~l~~~~~~l~--~L 148 (277)
..+ ++|++|++++|++. .+| .+..+++|++|++++|.+..+|..+..+++ |++|++++|.+..+|..+...+ +|
T Consensus 327 ~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 327 QKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp TTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred ccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 666 78888888888887 777 677777777777777777766666666666 7777777666665554443322 34
Q ss_pred CEEEccCC-------------------------------CCccCccccC-CCCCCCEEEccCCCCcccCchhccc-----
Q psy3567 149 KHLSLSQN-------------------------------QLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKM----- 191 (277)
Q Consensus 149 ~~L~l~~n-------------------------------~l~~~~~~l~-~~~~L~~L~l~~n~l~~l~~~~~~~----- 191 (277)
++|++++| .+..+|..+. .+++|++|++++|.++.+|......
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 44444444 4333333222 2444444444444444444332210
Q ss_pred ----eeeEEEccCCccCcCCcCcc--CCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567 192 ----KVIEMNLNKNQICHISPDIS--ECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV 246 (277)
Q Consensus 192 ----~l~~L~l~~n~l~~l~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 246 (277)
.+++|++++|+++.+|..+. .+++|+.|++++|.++ .+|..+.++++|++|++
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS--KFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCS--SCCCGGGGCSSCCEEEC
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCC--CcChhhhcCCCCCEEEC
Confidence 34455555555555554443 5555555555555554 24555555555555555
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.5e-26 Score=216.32 Aligned_cols=232 Identities=23% Similarity=0.340 Sum_probs=145.0
Q ss_pred CCCCceeEecCCCCcCCCCCCce------eeeccCCcc------hhHhhhccC-------ccCEEEeecCCCCcCCh--h
Q psy3567 13 SSPSKLTLLLPGKKNRGLIEGTI------FVLKMGNSA------TKRHFETAK-------KTGVINLSHQGFKEFPD--E 71 (277)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~------~~~~l~~~~-------~L~~L~l~~~~i~~~~~--~ 71 (277)
..+++++|++++|.+.+.+|..+ ..+.+..+. ++..+..++ +|++|++++|+++.+|+ .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 34678899999999988888644 556666664 445555555 88999999998888887 6
Q ss_pred HHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCccc-CceeecccccccccchhhhcCCC--C
Q psy3567 72 MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEK-LENVSGNCNLIKELPLSFSKLHN--L 148 (277)
Q Consensus 72 ~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~n~~~~l~~~~~~l~~--L 148 (277)
+..+ ++|+.|++++|++..+| .+..+++|++|++++|.+..+|..+..+++ |++|++++|.+..+|..+..++. |
T Consensus 569 l~~L-~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKM-VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTC-TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhcC-CCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 6666 78888888888888777 777888888888888888777777777777 77777777777666544433321 4
Q ss_pred CEEEccCC-----------------------------CCccCccccC-CCCCCCEEEccCCCCcccCchhccc-------
Q psy3567 149 KHLSLSQN-----------------------------QLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKM------- 191 (277)
Q Consensus 149 ~~L~l~~n-----------------------------~l~~~~~~l~-~~~~L~~L~l~~n~l~~l~~~~~~~------- 191 (277)
+.|++++| .+..+|..+. .+++|+.|++++|.++.+|..+...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 44444443 3333333322 3445555555555555444433221
Q ss_pred --eeeEEEccCCccCcCCcCcc--CCCCCCEEEcCCCccccCccCccccCCCCccEEEcCC
Q psy3567 192 --KVIEMNLNKNQICHISPDIS--ECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG 248 (277)
Q Consensus 192 --~l~~L~l~~n~l~~l~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 248 (277)
.+++|++++|+++.+|..+. .+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS--SFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCS--SCCCGGGGCTTCCEEECCC
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCC--ccchhhhcCCCCCEEECCC
Confidence 34555555555555555444 4555555555555554 2444444555555555543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=7e-27 Score=216.71 Aligned_cols=204 Identities=20% Similarity=0.278 Sum_probs=145.2
Q ss_pred hHhhhccCccCEEEeecCCCCc------------------CChhHH--HhhccccEEEccCCCCC-cCCccccccCCCcE
Q psy3567 46 KRHFETAKKTGVINLSHQGFKE------------------FPDEMN--ELKAVLRTLDISQNKIS-KFPLDLASYQLLKS 104 (277)
Q Consensus 46 ~~~l~~~~~L~~L~l~~~~i~~------------------~~~~~~--~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~ 104 (277)
+..++++++|++|++++|+++. +|+.+. .+ ++|++|++++|++. .+|..+.++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 3567788888888888888887 787776 66 78888888888765 66777888888888
Q ss_pred EeccCCc-Ccc--cCccccCc------ccCceeecccccccccch--hhhcCCCCCEEEccCCCCc-cCccccCCCCCCC
Q psy3567 105 LTFDQNK-IES--LPKDIGTL------EKLENVSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLD 172 (277)
Q Consensus 105 L~l~~~~-i~~--~~~~~~~l------~~L~~L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~ 172 (277)
|++++|+ ++. +|..++.+ ++|++|++++|.+..+|. .++.+++|++|++++|.+. .+| .++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 8888887 764 66666655 778888888888777777 7777888888888888777 676 666666777
Q ss_pred EEEccCCCCcccCchhccc-e-eeEEEccCCccCcCCcCccCCC--CCCEEEcCCCccccCccCcccc-------CCCCc
Q psy3567 173 VLDLSFNRIESIPDGIGKM-K-VIEMNLNKNQICHISPDISECV--RLKILRLEENCLAINAIPTCIL-------TSSNV 241 (277)
Q Consensus 173 ~L~l~~n~l~~l~~~~~~~-~-l~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~-------~~~~L 241 (277)
+|++++|.++.+|..+..+ + +++|++++|+++.+|..+...+ +|+.|++++|.++ +..|..+. .+++|
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-CcchhhhcccccccccCCCC
Confidence 7777777776666665554 3 6677777777776666655433 6666666666666 45555555 45566
Q ss_pred cEEEcCCCeee
Q psy3567 242 CTLNVEGNLFE 252 (277)
Q Consensus 242 ~~l~l~~n~~~ 252 (277)
++|++++|.++
T Consensus 436 ~~L~Ls~N~l~ 446 (636)
T 4eco_A 436 SSINLSNNQIS 446 (636)
T ss_dssp EEEECCSSCCC
T ss_pred CEEECcCCccC
Confidence 66666666555
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=197.51 Aligned_cols=220 Identities=21% Similarity=0.280 Sum_probs=185.5
Q ss_pred CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEec
Q psy3567 33 GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTF 107 (277)
Q Consensus 33 ~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l 107 (277)
+.+..+.+.++.+. ..|..+++|++|++++|.++.+++..+..+++|++|++++|+++.+++ .|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 33444444444432 567889999999999999998887666655999999999999998877 5899999999999
Q ss_pred cCCcCcccCc-cccCcccCceeeccc-ccccccch-hhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc
Q psy3567 108 DQNKIESLPK-DIGTLEKLENVSGNC-NLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI 184 (277)
Q Consensus 108 ~~~~i~~~~~-~~~~l~~L~~L~l~~-n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l 184 (277)
++|.+..++. .+..+++|++|++++ +.+..++. .|..+++|++|++++|.+..+| .+..+++|++|++++|.++.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCcc
Confidence 9999998865 788999999999988 55666665 5899999999999999999987 477899999999999999976
Q ss_pred -Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 185 -PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 185 -~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
|..+..+ .+++|++++|+++.++. .+..+++|+.|++++|.++ ...+..+..+++|+.|++++|++...
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccCC
Confidence 5556666 49999999999998765 5889999999999999998 44445678899999999999999864
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6.1e-25 Score=187.99 Aligned_cols=231 Identities=17% Similarity=0.274 Sum_probs=133.9
Q ss_pred CceeEecCCCCcCCC---CCCceeeeccCCcchh----HhhhccCccCEEEeecCCCCcC-ChhHHHhhccccEEEccCC
Q psy3567 16 SKLTLLLPGKKNRGL---IEGTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEF-PDEMNELKAVLRTLDISQN 87 (277)
Q Consensus 16 ~l~~l~l~~~~~~~~---~~~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~~ 87 (277)
.++.++++++.+... +++.+..+.+.++.+. ..|..+++|++|++++|+++.+ |..+..+ ++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC-CCCCEEECCCC
Confidence 344455555544321 2344455555544432 3466667777777777777655 3333333 66777777777
Q ss_pred CCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccc---cchhhhcCCCCCEEEccCCCCccCcc
Q psy3567 88 KISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE---LPLSFSKLHNLKHLSLSQNQLNKFPT 163 (277)
Q Consensus 88 ~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~---l~~~~~~l~~L~~L~l~~n~l~~~~~ 163 (277)
+++.+|..+. ++|++|++++|.+..++. .+..+++|+++++++|.+.. .+..+..+++|++|++++|.+..+|.
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 7666665443 566666666666665543 45666666666666666642 23456666666666666666666554
Q ss_pred ccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCC
Q psy3567 164 VLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSN 240 (277)
Q Consensus 164 ~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 240 (277)
.+. ++|++|++++|.++.+ +..+..+ .+++|++++|+++.++. .+..+++|++|++++|.++ .+|..+..+++
T Consensus 189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~ 264 (330)
T 1xku_A 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKY 264 (330)
T ss_dssp SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSS
T ss_pred ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCC
Confidence 443 5666666666666644 3334444 36666666666665544 3555666666666666665 55555666666
Q ss_pred ccEEEcCCCeeee
Q psy3567 241 VCTLNVEGNLFEM 253 (277)
Q Consensus 241 L~~l~l~~n~~~~ 253 (277)
|++|++++|.++.
T Consensus 265 L~~L~l~~N~i~~ 277 (330)
T 1xku_A 265 IQVVYLHNNNISA 277 (330)
T ss_dssp CCEEECCSSCCCC
T ss_pred cCEEECCCCcCCc
Confidence 6666666666554
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.8e-25 Score=198.02 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=191.0
Q ss_pred eEecCCCCcCCC---CCCceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc
Q psy3567 19 TLLLPGKKNRGL---IEGTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK 91 (277)
Q Consensus 19 ~l~l~~~~~~~~---~~~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~ 91 (277)
.++.++.+++.. +++.+..+.+.++.+. ..|..+++|++|++++|+++.+++..+..+++|++|++++|+++.
T Consensus 58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 344444444321 2344555555554442 567889999999999999998876555555999999999999998
Q ss_pred CCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeeccc-ccccccch-hhhcCCCCCEEEccCCCCccCccccCC
Q psy3567 92 FPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNC-NLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFN 167 (277)
Q Consensus 92 ~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~-n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~l~~ 167 (277)
+++. |..+++|++|++++|.+..++. .+..+++|++|++++ +.+..++. .|..+++|++|++++|.+..+| .+..
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~ 216 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTP 216 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTT
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccc
Confidence 8775 8899999999999999998865 788999999999987 56667765 5889999999999999999886 4778
Q ss_pred CCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEE
Q psy3567 168 LQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTL 244 (277)
Q Consensus 168 ~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 244 (277)
+++|++|++++|.++.+ |..+..+ ++++|++++|+++.++. .+..+++|+.|++++|.++ ...+..+..+++|++|
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL 295 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEE
Confidence 89999999999999976 5556666 49999999999997754 5889999999999999998 4444567889999999
Q ss_pred EcCCCeeeec
Q psy3567 245 NVEGNLFEMK 254 (277)
Q Consensus 245 ~l~~n~~~~~ 254 (277)
++++|++...
T Consensus 296 ~L~~Np~~Cd 305 (452)
T 3zyi_A 296 HLHHNPWNCD 305 (452)
T ss_dssp ECCSSCEECS
T ss_pred EccCCCcCCC
Confidence 9999999864
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2e-25 Score=195.30 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=66.0
Q ss_pred hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEE
Q psy3567 142 FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKIL 219 (277)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L 219 (277)
+..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+|.....+ .+++|++++|+++.+|..+..+++|+.|
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence 44555666666666665544 445555666666666666666555444433 3666666666666666666666666666
Q ss_pred EcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 220 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
++++|.++ .++ +..+++|++|++++|++++..
T Consensus 324 ~L~~N~i~--~~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 324 YLDHNSIV--TLK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp ECCSSCCC--CCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred ECCCCccc--eeC--chhhccCCEEEcCCCCccchh
Confidence 66666665 232 455666777777777666543
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=9.5e-25 Score=183.03 Aligned_cols=202 Identities=22% Similarity=0.283 Sum_probs=168.1
Q ss_pred cCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC-CccccccCCCcEEeccCCc-Cccc-CccccCcccCcee
Q psy3567 52 AKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTFDQNK-IESL-PKDIGTLEKLENV 128 (277)
Q Consensus 52 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~-i~~~-~~~~~~l~~L~~L 128 (277)
.+++++|++++++++.+++..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 35789999999999988765444448999999999999866 5578899999999999997 7777 6678889999999
Q ss_pred eccccccccc-chhhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccC
Q psy3567 129 SGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQIC 204 (277)
Q Consensus 129 ~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~ 204 (277)
++++|.+..+ +..+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..+ .+++|++++|+++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999998877 45688899999999999999987654 67889999999999999977664 5555 4999999999999
Q ss_pred cC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 205 HI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 205 ~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
.+ |..+..+++|+.|++++|.++ +..+..+..+++|++|++++|++...
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccCC
Confidence 76 667888999999999999998 33335688899999999999998853
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=9e-25 Score=207.43 Aligned_cols=236 Identities=19% Similarity=0.325 Sum_probs=175.8
Q ss_pred CCCceeEecCCCC-cCC-CCCC-------------ceeeeccCCcch---hH--hhhccCccCEEEeecCCCCcCChhHH
Q psy3567 14 SPSKLTLLLPGKK-NRG-LIEG-------------TIFVLKMGNSAT---KR--HFETAKKTGVINLSHQGFKEFPDEMN 73 (277)
Q Consensus 14 ~~~l~~l~l~~~~-~~~-~~~~-------------~~~~l~~~~~~~---~~--~l~~~~~L~~L~l~~~~i~~~~~~~~ 73 (277)
.+++++|++++|. ++| .+|. .+..+.+.++.+ +. .+..+++|++|++++|+++.+| .+.
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 4577777777776 776 5553 455555555443 23 5777777777777777777776 444
Q ss_pred HhhccccEEEccCCCCCcCCccccccCC-CcEEeccCCcCcccCccccC-------------------------------
Q psy3567 74 ELKAVLRTLDISQNKISKFPLDLASYQL-LKSLTFDQNKIESLPKDIGT------------------------------- 121 (277)
Q Consensus 74 ~~~~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~~~i~~~~~~~~~------------------------------- 121 (277)
.+ ++|+.|++++|++..+|..+.++++ |++|++++|.+..+|..+..
T Consensus 593 ~L-~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TN-VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TT-SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CC-CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 44 6777777777777777766777776 77777777766655543322
Q ss_pred cccCceeecccccccccchhh-hcCCCCCEEEccCCCCccCccccCCCC--------CCCEEEccCCCCcccCchhc--c
Q psy3567 122 LEKLENVSGNCNLIKELPLSF-SKLHNLKHLSLSQNQLNKFPTVLFNLQ--------HLDVLDLSFNRIESIPDGIG--K 190 (277)
Q Consensus 122 l~~L~~L~l~~n~~~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~l~~~~--------~L~~L~l~~n~l~~l~~~~~--~ 190 (277)
..+|++|++++|.+..+|..+ ..+++|+.|++++|.+..+|..+.... +|++|++++|.++.+|..++ .
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 235777777777777777654 478899999999999998887665432 89999999999999988876 5
Q ss_pred c-eeeEEEccCCccCcCCcCccCCCCCCEEEcCC------CccccCccCccccCCCCccEEEcCCCeee
Q psy3567 191 M-KVIEMNLNKNQICHISPDISECVRLKILRLEE------NCLAINAIPTCILTSSNVCTLNVEGNLFE 252 (277)
Q Consensus 191 ~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 252 (277)
+ .++.|++++|+++.+|..+..+++|+.|++++ |.+. +.+|..+.++++|+.|++++|.++
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL-RQWPTGITTCPSLIQLQIGSNDIR 819 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCCC
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccc-ccChHHHhcCCCCCEEECCCCCCC
Confidence 5 49999999999999998888999999999976 6666 688888999999999999999884
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=5.9e-25 Score=188.25 Aligned_cols=233 Identities=18% Similarity=0.264 Sum_probs=114.2
Q ss_pred ceeEecCCCCcCCC---CCCceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCC
Q psy3567 17 KLTLLLPGKKNRGL---IEGTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKI 89 (277)
Q Consensus 17 l~~l~l~~~~~~~~---~~~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i 89 (277)
++.++++++++... +++.+..+.+.++.+. ..|..+++|++|++++|+++.+++..+..+++|++|++++|++
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 44455555544311 1233444444443332 3455555566666666655544332222225555666655555
Q ss_pred CcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccc---cchhhhcC--------------------
Q psy3567 90 SKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE---LPLSFSKL-------------------- 145 (277)
Q Consensus 90 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~---l~~~~~~l-------------------- 145 (277)
..+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.+.. .+..+..+
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~ 192 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC
T ss_pred CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc
Confidence 55554433 455555555555554433 34555555555555555431 12223333
Q ss_pred CCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCCcccCc-hhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcC
Q psy3567 146 HNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIESIPD-GIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLE 222 (277)
Q Consensus 146 ~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~ 222 (277)
++|++|++++|.+..++ ..+..+++|++|++++|.++.++. .+..+ .+++|++++|+++.+|..+..+++|+.|+++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 34555555555555443 344455555555565555554433 23333 2555666666665555555555566666666
Q ss_pred CCccccCccCccccC------CCCccEEEcCCCeee
Q psy3567 223 ENCLAINAIPTCILT------SSNVCTLNVEGNLFE 252 (277)
Q Consensus 223 ~n~~~~~~~~~~~~~------~~~L~~l~l~~n~~~ 252 (277)
+|.++ ..-+..+.. .+.++.+++++|++.
T Consensus 273 ~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCC-ccChhHccccccccccccccceEeecCccc
Confidence 66554 111222222 234555666665554
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.2e-24 Score=185.66 Aligned_cols=233 Identities=21% Similarity=0.277 Sum_probs=119.9
Q ss_pred CCCceeEecCCCCcCCCCC----CceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCC
Q psy3567 14 SPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQN 87 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 87 (277)
.+++++|++++|.+++..+ +.+..+.+.++.+. +.+..+++|++|++++|.++.+++ +..+ ++|+.|++++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l-~~L~~L~l~~n 142 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANL-TKMYSLNLGAN 142 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTC-TTCCEEECTTC
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccC-CceeEEECCCC
Confidence 4456666666666554321 33344444444332 345566666666666666665554 3333 55555555555
Q ss_pred CCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch---------------------hhhcCC
Q psy3567 88 KISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL---------------------SFSKLH 146 (277)
Q Consensus 88 ~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~---------------------~~~~l~ 146 (277)
.....++.+..+++|++|++++|.+..++. +..+++|+++++++|.+..++. .+..++
T Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 221 (347)
T 4fmz_A 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMT 221 (347)
T ss_dssp TTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred CCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCC
Confidence 333222334455555555555555444332 4445555555555555444332 134444
Q ss_pred CCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCc
Q psy3567 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENC 225 (277)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~ 225 (277)
+|++|++++|.+..++. +..+++|++|++++|.++.++. +..+ ++++|++++|+++.++ .+..+++|+.|++++|.
T Consensus 222 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChh-HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc
Confidence 55555555555554433 4455555555555555554432 2222 3556666666655552 34555666666666666
Q ss_pred cccCccCccccCCCCccEEEcCCCeeee
Q psy3567 226 LAINAIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 226 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
++ +..+..+..+++|++|++++|+++.
T Consensus 299 l~-~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 299 LG-NEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CC-GGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CC-CcChhHhhccccCCEEEccCCcccc
Confidence 55 3444555566666666666666554
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=4.8e-26 Score=196.66 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=142.5
Q ss_pred hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc--cccCccc
Q psy3567 48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK--DIGTLEK 124 (277)
Q Consensus 48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~ 124 (277)
.|..+++|++|++++|+++.+++..+..+++|++|++++|+++.++.. +.++++|++|++++|.+..++. .+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 456666666666666666655443233236666666666666666554 5666666666666666666654 5566666
Q ss_pred Cceeecccc-cccccc-hhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhcc-c-eeeEEEcc
Q psy3567 125 LENVSGNCN-LIKELP-LSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIGK-M-KVIEMNLN 199 (277)
Q Consensus 125 L~~L~l~~n-~~~~l~-~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~~-~-~l~~L~l~ 199 (277)
|++|++++| .+..++ ..+..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+|..... . .+++|+++
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 666666666 344443 3466666666666666666644 45555666666666666666655544321 2 36666666
Q ss_pred CCccCc--------------------------------CCcCccCCCCCCEEEcCCCccccCccCcc-ccCCCCccEEEc
Q psy3567 200 KNQICH--------------------------------ISPDISECVRLKILRLEENCLAINAIPTC-ILTSSNVCTLNV 246 (277)
Q Consensus 200 ~n~l~~--------------------------------l~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~l~l 246 (277)
+|+++. +|..+..+++|+.|++++|.++ .+|.. +..+++|++|++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHHHhcCCCCCEEEe
Confidence 666654 4445678899999999999998 67776 578999999999
Q ss_pred CCCeeeecc--ccccccchhhhhh
Q psy3567 247 EGNLFEMKA--FQQLDGYNNYMDS 268 (277)
Q Consensus 247 ~~n~~~~~~--~~~l~~~~~~~~~ 268 (277)
++|++++.. ++.+..+.+....
T Consensus 309 ~~N~~~~~~~~l~~l~~~~~~~~~ 332 (353)
T 2z80_A 309 HTNPWDCSCPRIDYLSRWLNKNSQ 332 (353)
T ss_dssp CSSCBCCCHHHHHHHHHHHHHTTT
T ss_pred eCCCccCcCCCcHHHHHHHHhccc
Confidence 999999764 5555555544433
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=2.6e-24 Score=184.06 Aligned_cols=232 Identities=21% Similarity=0.319 Sum_probs=196.1
Q ss_pred CCceeEecCCCCcCCCCC------CceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
+.++.|++++|.+++..+ +.+..+.+.++.+ +..|..+++|++|++++|+++.+|..++ ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence 678899999999887755 3446677776554 3678999999999999999999997654 78999999
Q ss_pred cCCCCCcCCc-cccccCCCcEEeccCCcCcc---cCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCcc
Q psy3567 85 SQNKISKFPL-DLASYQLLKSLTFDQNKIES---LPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNK 160 (277)
Q Consensus 85 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~ 160 (277)
++|++..++. .+.++++|++|++++|.+.. .+..+..+++|++|++++|.+..+|..+. ++|++|++++|.+..
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCE
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCc
Confidence 9999998776 48999999999999999873 36678899999999999999998886654 799999999999997
Q ss_pred C-ccccCCCCCCCEEEccCCCCcccCc-hhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccC-cccc
Q psy3567 161 F-PTVLFNLQHLDVLDLSFNRIESIPD-GIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIP-TCIL 236 (277)
Q Consensus 161 ~-~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~ 236 (277)
+ +..+..+++|++|++++|.++.++. .+..+ .+++|++++|+++.+|..+..+++|++|++++|.++ .++ ..+.
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~--~~~~~~f~ 284 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS--AIGSNDFC 284 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC--CCCTTSSS
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC--ccChhhcC
Confidence 6 5678889999999999999997654 55555 499999999999999999999999999999999998 333 3343
Q ss_pred C------CCCccEEEcCCCeeee
Q psy3567 237 T------SSNVCTLNVEGNLFEM 253 (277)
Q Consensus 237 ~------~~~L~~l~l~~n~~~~ 253 (277)
. .+.++.+++++|++..
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCG
T ss_pred CcccccccccccceEeecCcccc
Confidence 2 3689999999998864
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.8e-25 Score=202.06 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=70.1
Q ss_pred hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEE
Q psy3567 142 FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKIL 219 (277)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L 219 (277)
+..+++|+.|++++|.+..+ |..++.+++|+.|++++|.++.+|.....+ .+++|++++|.++.+|..+..+++|+.|
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 45556666666666666644 445566666667777666666665555444 3666777777777666666666677777
Q ss_pred EcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 220 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
++++|.++ .++ +..+++|+.|++++|++++..
T Consensus 330 ~L~~N~l~--~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 330 YLDHNSIV--TLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp ECCSSCCC--CCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred ECCCCCCC--CcC--hhhcCCCCEEEeeCCCCCChh
Confidence 77777665 222 455667777777777776543
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=6.5e-25 Score=196.84 Aligned_cols=240 Identities=22% Similarity=0.256 Sum_probs=173.6
Q ss_pred CCceeEecCCCCcCCCCCC------ceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIEG------TIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
+.++.|++++|.+++..+. .+..+.+.++.+ +..|.++++|++|++++|+++.+|+..+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5788899999988876553 345666666544 367888899999999999999888765554588999999
Q ss_pred cCCCCCcC-CccccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccC
Q psy3567 85 SQNKISKF-PLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKF 161 (277)
Q Consensus 85 ~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~ 161 (277)
++|++..+ +..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99988855 44688888999999999888866 4578888888888888888887764 477788888888888777655
Q ss_pred cc-ccCCCCC------------------------CCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCC
Q psy3567 162 PT-VLFNLQH------------------------LDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISEC 213 (277)
Q Consensus 162 ~~-~l~~~~~------------------------L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~ 213 (277)
+. .+..+++ |++|++++|.++.+|.. +..+ .+++|++++|+++.++.. +..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 33 3444444 44555555555555532 3333 377777777777766543 6677
Q ss_pred CCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 214 VRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 214 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
++|+.|++++|.++ +..|..+..+++|++|++++|.++...
T Consensus 272 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp TTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred ccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeC
Confidence 77777777777776 455667777788888888888776543
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.2e-24 Score=183.02 Aligned_cols=200 Identities=25% Similarity=0.363 Sum_probs=173.2
Q ss_pred hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN 127 (277)
Q Consensus 49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~ 127 (277)
+++++++++++++++.++.+|+.+. ++++.|++++|.+..++ ..+..+++|++|++++|.+..++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 5667889999999999999987653 67999999999998664 4688999999999999999887654 78899999
Q ss_pred eecccccccccchhhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccC
Q psy3567 128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQIC 204 (277)
Q Consensus 128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~ 204 (277)
|++++|.+..+|..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.+|... ..+ ++++|++++|+++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999999999888889999999999999999886 45778999999999999999887664 344 5999999999999
Q ss_pred cCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 205 HISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 205 ~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
.+|.. +..+++|+.|++++|.++ .+|..+...++|+.+++++|++...
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCccCc
Confidence 99876 577899999999999997 7888888888999999999999864
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.3e-24 Score=183.76 Aligned_cols=230 Identities=19% Similarity=0.296 Sum_probs=176.1
Q ss_pred CCCCceeEecCCCCcCCCCC----CceeeeccCCcch---hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEcc
Q psy3567 13 SSPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSAT---KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDIS 85 (277)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 85 (277)
..+++++|++++|.+.+..+ +.+..+.+..+.. ...+..+++|++|++++|.+..+++ +..+ ++|++|+++
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l-~~L~~L~l~ 185 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANL-TDLYSLSLN 185 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGC-TTCSEEECT
T ss_pred CCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccC-CCCCEEEcc
Confidence 34566666666666554422 3334444444322 2446777777778888777776665 3344 778888888
Q ss_pred CCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCcccc
Q psy3567 86 QNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL 165 (277)
Q Consensus 86 ~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l 165 (277)
+|++..++. +..+++|+++++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+ +.+
T Consensus 186 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~ 261 (347)
T 4fmz_A 186 YNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAV 261 (347)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGG
T ss_pred CCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhH
Confidence 888777665 7778888888888888876654 7888999999999999998876 88999999999999999987 467
Q ss_pred CCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC-cCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567 166 FNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCILTSSNVCT 243 (277)
Q Consensus 166 ~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 243 (277)
..+++|++|++++|.++.++. +..+ .+++|++++|+++..+ ..+..+++|+.|++++|+++ .++. +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT--DIRP-LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC--CCGG-GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc--cccC-hhhhhccce
Confidence 789999999999999998754 4444 5999999999999665 45889999999999999998 3333 888999999
Q ss_pred EEcCCCeee
Q psy3567 244 LNVEGNLFE 252 (277)
Q Consensus 244 l~l~~n~~~ 252 (277)
+++++|.++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999875
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=195.00 Aligned_cols=243 Identities=20% Similarity=0.249 Sum_probs=171.9
Q ss_pred CCCCCCceeEecCCCCcCCCCCC------ceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhcccc
Q psy3567 11 DPSSPSKLTLLLPGKKNRGLIEG------TIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLR 80 (277)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 80 (277)
+...+++++|++++|.+++..|. .+..+.+.++.+. ..|..+++|++|++++|++..+++..+..+++|+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 33456778888888877766543 3455556555442 3466777778888887777765444334347777
Q ss_pred EEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccch-hhhc-------------
Q psy3567 81 TLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPL-SFSK------------- 144 (277)
Q Consensus 81 ~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~-~~~~------------- 144 (277)
+|++++|.+..++ ..|..+++|++|++++|.+..++. .+..+++|+.|++++|.+..++. .+..
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 7777777776543 356777777777777777766543 45566666666666655554322 2333
Q ss_pred -----------CCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcC-CcC
Q psy3567 145 -----------LHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHI-SPD 209 (277)
Q Consensus 145 -----------l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l-~~~ 209 (277)
..+|++|++++|.+..+|. .+..+++|++|++++|.++.++.. +..+ ++++|++++|+++.+ +..
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 3366677777777777763 577899999999999999977654 4444 599999999999977 456
Q ss_pred ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 210 ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 210 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
+..+++|+.|++++|.++ ...+..+..+++|++|++++|++.+.
T Consensus 292 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp BTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred hcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccCc
Confidence 899999999999999998 34345678899999999999999864
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.1e-24 Score=192.29 Aligned_cols=132 Identities=23% Similarity=0.284 Sum_probs=104.0
Q ss_pred ccCceeeccccccccc-chhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEc
Q psy3567 123 EKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNL 198 (277)
Q Consensus 123 ~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l 198 (277)
++|+++++++|.+..+ |..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.+ +..+..+ .+++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 3456666666665543 45678888999999999998876 45777889999999999999876 4445555 4999999
Q ss_pred cCCccCcC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 199 NKNQICHI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 199 ~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
++|+++.+ |..+..+++|++|++++|.++ +..+..+..+++|++|++++|++++..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCC
Confidence 99999977 556889999999999999998 333345678999999999999998764
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=193.21 Aligned_cols=238 Identities=18% Similarity=0.244 Sum_probs=158.9
Q ss_pred CCceeEecCCCCcCCCCCCc------eeeeccCCcch-----hHhhhccCccCEEEeecCCCCcC-ChhHHHhhccccEE
Q psy3567 15 PSKLTLLLPGKKNRGLIEGT------IFVLKMGNSAT-----KRHFETAKKTGVINLSHQGFKEF-PDEMNELKAVLRTL 82 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~------~~~l~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L 82 (277)
+++++|++++|.+++..|.. +.++.+.++.. +..|..+++|++|++++|+++.+ |..+..+ ++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL-ANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC-TTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc-ccCCEE
Confidence 56777888888777665543 34555555533 24577777888888888877755 3334444 777777
Q ss_pred EccCCCCCc-CCcc--ccccCCCcEEeccCCcCccc-Ccc-ccCcccCceeecccccccccc-hhhhc------------
Q psy3567 83 DISQNKISK-FPLD--LASYQLLKSLTFDQNKIESL-PKD-IGTLEKLENVSGNCNLIKELP-LSFSK------------ 144 (277)
Q Consensus 83 ~l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~i~~~-~~~-~~~l~~L~~L~l~~n~~~~l~-~~~~~------------ 144 (277)
++++|+++. ++.. +.++++|++|++++|.+..+ |.. +..+++|++|++++|.+..++ ..+..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 777777763 2332 66777777777777777765 333 666777777777776665332 11211
Q ss_pred ----------------------CC--------------------------------------------------------
Q psy3567 145 ----------------------LH-------------------------------------------------------- 146 (277)
Q Consensus 145 ----------------------l~-------------------------------------------------------- 146 (277)
++
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 12
Q ss_pred -------CCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCC-cCccCCCC
Q psy3567 147 -------NLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHIS-PDISECVR 215 (277)
Q Consensus 147 -------~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~ 215 (277)
+|++|++++|.+..+ |..+..+++|++|++++|.++.+ |..+..+ .+++|++++|+++.++ ..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 344444444444432 44566778888888888888865 4455555 4888888888888764 45778888
Q ss_pred CCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 216 LKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
|++|++++|.++ +..|..+..+++|++|++++|.++..
T Consensus 349 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 349 LEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp CCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCEEECCCCccc-ccChhhccccccccEEECCCCccccC
Confidence 888888888887 45577788888888888888888753
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.8e-24 Score=184.10 Aligned_cols=233 Identities=20% Similarity=0.300 Sum_probs=183.7
Q ss_pred CCceeEecCCCCcCCCCCC------ceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIEG------TIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
+.++.|++++|.+++..+. .+..+.+.++.+ +..|..+++|++|++++|+++.+|+.++ ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence 5789999999988876553 346666766554 3678899999999999999999987654 68999999
Q ss_pred cCCCCCcCCcc-ccccCCCcEEeccCCcCcc---cCccccCc--------------------ccCceeecccccccccc-
Q psy3567 85 SQNKISKFPLD-LASYQLLKSLTFDQNKIES---LPKDIGTL--------------------EKLENVSGNCNLIKELP- 139 (277)
Q Consensus 85 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~---~~~~~~~l--------------------~~L~~L~l~~n~~~~l~- 139 (277)
++|++..++.. +.++++|++|++++|.+.. .+..+..+ ++|++|++++|.+..++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH
Confidence 99999987764 8889999999999988852 23333332 46677777777777665
Q ss_pred hhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcC-ccC----
Q psy3567 140 LSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-ISE---- 212 (277)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~-l~~---- 212 (277)
..+..+++|++|++++|.+..++. .+..+++|++|++++|.++.+|..+..++ +++|++++|+++.++.. +..
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 568899999999999999998764 67789999999999999999999887775 99999999999988764 433
Q ss_pred --CCCCCEEEcCCCccccC-ccCccccCCCCccEEEcCCCe
Q psy3567 213 --CVRLKILRLEENCLAIN-AIPTCILTSSNVCTLNVEGNL 250 (277)
Q Consensus 213 --~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~l~l~~n~ 250 (277)
.+.|+.+++++|++... ..|..+..+++++.+++++|.
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 36799999999998633 334568889999999999874
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.2e-24 Score=200.47 Aligned_cols=241 Identities=17% Similarity=0.144 Sum_probs=200.5
Q ss_pred CCCCCCCceeEecCCCCcCCCCC----CceeeeccCCcch--hHhhhccCccCEEEeecCCCCcC---ChhHHHhhcccc
Q psy3567 10 WDPSSPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSAT--KRHFETAKKTGVINLSHQGFKEF---PDEMNELKAVLR 80 (277)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~ 80 (277)
+++..+++++|++++|.+ +.+| +.+..+.+..+.. ...+..+++|++|++++|+++.+ |..+..+ ++|+
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~ 379 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLR 379 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC-SCCC
T ss_pred hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC-Cccc
Confidence 455566888888888888 5665 2334444444422 23567889999999999999865 6666555 8999
Q ss_pred EEEccCCCCCcCCccccccCCCcEEeccCCcCcccC--ccccCcccCceeecccccccc-cchhhhcCCCCCEEEccCCC
Q psy3567 81 TLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP--KDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQ 157 (277)
Q Consensus 81 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l~~n~ 157 (277)
+|++++|.+..+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.
T Consensus 380 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 999999999988888999999999999999998764 478899999999999999885 56678999999999999999
Q ss_pred Ccc--CccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccccCccC
Q psy3567 158 LNK--FPTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNKNQICHI-SPDISECVRLKILRLEENCLAINAIP 232 (277)
Q Consensus 158 l~~--~~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~ 232 (277)
+.. +|..+..+++|++|++++|.++.+ |..+..++ +++|++++|+++.+ |..+..+++|+.|++++|.++ .+|
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p 537 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSK 537 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEE
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccC
Confidence 985 677888999999999999999965 55566664 99999999999976 667999999999999999997 788
Q ss_pred ccccCCC-CccEEEcCCCeeeec
Q psy3567 233 TCILTSS-NVCTLNVEGNLFEMK 254 (277)
Q Consensus 233 ~~~~~~~-~L~~l~l~~n~~~~~ 254 (277)
..+..++ +|+++++++|++.+.
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCCS
T ss_pred HhHhhhcccCcEEEccCCCcccC
Confidence 8888887 599999999999863
No 30
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.9e-25 Score=189.82 Aligned_cols=233 Identities=18% Similarity=0.140 Sum_probs=184.7
Q ss_pred CCceeEecCCCCcCCCCCCc----eeeeccCCcch-----hHhhh-------ccCccCEEEeecCCCC-cCChhHH-Hhh
Q psy3567 15 PSKLTLLLPGKKNRGLIEGT----IFVLKMGNSAT-----KRHFE-------TAKKTGVINLSHQGFK-EFPDEMN-ELK 76 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~----~~~l~~~~~~~-----~~~l~-------~~~~L~~L~l~~~~i~-~~~~~~~-~~~ 76 (277)
++++++++++|.+ .+|.+ +..+.+..+.+ +..+. .+++|++|++++|+++ .+|..++ ...
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4567788888887 55543 33444444333 23333 6899999999999998 6777652 334
Q ss_pred ccccEEEccCCCCCcCCcccccc-----CCCcEEeccCCcCcccC-ccccCcccCceeecccccccc---cchhh--hcC
Q psy3567 77 AVLRTLDISQNKISKFPLDLASY-----QLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKE---LPLSF--SKL 145 (277)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~l-----~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~~~~---l~~~~--~~l 145 (277)
++|++|++++|+++.+|..+..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.. ++..+ ..+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 89999999999999887777777 89999999999999876 689999999999999998653 34444 889
Q ss_pred CCCCEEEccCCCCccCc---cc-cCCCCCCCEEEccCCCCcccC--chhccc-eeeEEEccCCccCcCCcCccCCCCCCE
Q psy3567 146 HNLKHLSLSQNQLNKFP---TV-LFNLQHLDVLDLSFNRIESIP--DGIGKM-KVIEMNLNKNQICHISPDISECVRLKI 218 (277)
Q Consensus 146 ~~L~~L~l~~n~l~~~~---~~-l~~~~~L~~L~l~~n~l~~l~--~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~ 218 (277)
++|++|++++|.+..++ .. +..+++|++|++++|.++..+ .....+ .+++|++++|+++.+|..+. ++|++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 99999999999998543 23 346799999999999999644 223333 59999999999999998876 89999
Q ss_pred EEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 219 LRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 219 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
|++++|+++ .+|. +..+++|++|++++|++++.
T Consensus 279 L~Ls~N~l~--~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 279 LDLSYNRLD--RNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EECCSSCCC--SCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred EECCCCCCC--CChh-HhhCCCCCEEeccCCCCCCC
Confidence 999999998 4566 88999999999999998764
No 31
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.6e-25 Score=188.54 Aligned_cols=216 Identities=21% Similarity=0.260 Sum_probs=174.1
Q ss_pred CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC
Q psy3567 14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP 93 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 93 (277)
.+++++|++++|.+++..+ ..|..+++|++|++++|.++.+++ +..+ ++|++|++++|+++.++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~--------------~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l-~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISA--------------ADLAPFTKLELLNLSSNVLYETLD-LESL-STLRTLDLNNNYVQELL 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCCH--------------HHHTTCTTCCEEECTTSCCEEEEE-ETTC-TTCCEEECCSSEEEEEE
T ss_pred CCCCCEEECcCCccCcCCH--------------HHhhCCCcCCEEECCCCcCCcchh-hhhc-CCCCEEECcCCcccccc
Confidence 3467778888887765432 356778888888888888886665 4444 88888888888877655
Q ss_pred ccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCc-ccc-CCCCC
Q psy3567 94 LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFP-TVL-FNLQH 170 (277)
Q Consensus 94 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~-~~l-~~~~~ 170 (277)
. .++|++|++++|++..++.. .+++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+ ..+++
T Consensus 97 ~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 97 V----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp E----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred C----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 3 37888888888888876543 36789999999999987754 6888999999999999998763 444 36889
Q ss_pred CCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCe
Q psy3567 171 LDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250 (277)
Q Consensus 171 L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 250 (277)
|++|++++|.++.++......++++|++++|+++.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 171 L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCC
T ss_pred CCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCC
Confidence 999999999999776555444699999999999999888989999999999999997 678888899999999999999
Q ss_pred eee
Q psy3567 251 FEM 253 (277)
Q Consensus 251 ~~~ 253 (277)
++.
T Consensus 249 ~~~ 251 (317)
T 3o53_A 249 FHC 251 (317)
T ss_dssp CBH
T ss_pred ccC
Confidence 983
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=183.36 Aligned_cols=203 Identities=18% Similarity=0.214 Sum_probs=177.3
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC---CccccccCCCcEEeccCCcCcccCccccCcccCceee
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF---PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS 129 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 129 (277)
+++++|++++|+++.+|+.++..+++|++|++++|+++.+ +..+..+++|++|++++|.+..++..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5789999999999999987655559999999999999855 5667789999999999999999998899999999999
Q ss_pred cccccccccch--hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcc--cCchhccce-eeEEEccCCcc
Q psy3567 130 GNCNLIKELPL--SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIES--IPDGIGKMK-VIEMNLNKNQI 203 (277)
Q Consensus 130 l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~--l~~~~~~~~-l~~L~l~~n~l 203 (277)
+++|.+..++. .+..+++|++|++++|.+... +..+..+++|++|++++|.++. +|..+..++ +++|++++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 99999998764 689999999999999999855 5567789999999999999985 677777764 99999999999
Q ss_pred CcC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeeccc
Q psy3567 204 CHI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAF 256 (277)
Q Consensus 204 ~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 256 (277)
+.+ |..+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++...
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCH
Confidence 987 556889999999999999998 3444578889999999999999987443
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=4.2e-24 Score=181.23 Aligned_cols=198 Identities=17% Similarity=0.307 Sum_probs=156.7
Q ss_pred hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567 48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN 127 (277)
Q Consensus 48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~ 127 (277)
.+.++++|++|+++++.++.++ .+..+ ++|++|++++|++..+++ +..+++|++|++++|.+..++ .+..+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l-~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYL-NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhcc-CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 3456778888888888888876 34444 888888888888887777 888888888888888887765 5778888888
Q ss_pred eecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcC
Q psy3567 128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHI 206 (277)
Q Consensus 128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l 206 (277)
|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+ ++++|++++|+++.+
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence 8888888887764 7888888888888888887765 6778888888888888887766 4444 488888888888877
Q ss_pred CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeeccc
Q psy3567 207 SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAF 256 (277)
Q Consensus 207 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 256 (277)
+. +..+++|++|++++|.++ .++ .+..+++|++|++++|+++....
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~--~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred hh-hcCCCCCCEEEccCCccC--ccc-cccCCCCCCEEEccCCeeecCCe
Confidence 76 777888888888888887 344 37788888888888888876433
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4e-24 Score=196.95 Aligned_cols=238 Identities=18% Similarity=0.258 Sum_probs=174.3
Q ss_pred CCceeEecCCCCcCCCCC------CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
.+++.+++++|.+....+ +.+..+.+.++.+. ..|+.++.|++|++++|.++.+|+..+..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 456777777777665433 34456666655443 46788888888888888888887766554588888888
Q ss_pred cCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccchhhhcCCC---------------
Q psy3567 85 SQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPLSFSKLHN--------------- 147 (277)
Q Consensus 85 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~--------------- 147 (277)
++|.+..+|+. |.++++|++|++++|.+..++. .++.+++|++|++++|.+..++ +..+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccccc
Confidence 88888887775 5888888888888888887644 6888888888888888877553 222222
Q ss_pred -------------------------CCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccC
Q psy3567 148 -------------------------LKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNK 200 (277)
Q Consensus 148 -------------------------L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~ 200 (277)
|+.|++++|.+... ..+..+++|++|++++|.++.+ |..++.++ ++.|++++
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 33333333333332 3456678888888888888854 66666664 88899999
Q ss_pred CccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccc
Q psy3567 201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQ 257 (277)
Q Consensus 201 n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 257 (277)
|+++.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++...+.
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~~~ 342 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLKLS 342 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCCCC
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCC--ccCcccccCCCCCEEECCCCCCCCcChh
Confidence 999888888888889999999999887 6788888889999999999988765433
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=5.7e-24 Score=186.01 Aligned_cols=238 Identities=18% Similarity=0.258 Sum_probs=172.0
Q ss_pred CCceeEecCCCCcCCCCC------CceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
++++.++++++.++...+ +.+..+.+..+.+. ..|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 577788888887665433 34556666665443 46788889999999999988887665444488999999
Q ss_pred cCCCCCcCCcc-ccccCCCcEEeccCCcCcccC-ccccCcccCceeecccccccccchhhhcCC----------------
Q psy3567 85 SQNKISKFPLD-LASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKELPLSFSKLH---------------- 146 (277)
Q Consensus 85 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~---------------- 146 (277)
++|+++.+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.+..++ +..++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccC
Confidence 99988888776 588899999999999888764 46888889999999888877553 22222
Q ss_pred ------------------------CCCEEEccCCCCccCccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccC
Q psy3567 147 ------------------------NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNK 200 (277)
Q Consensus 147 ------------------------~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~ 200 (277)
+|+.|++++|.+... ..+..+++|++|++++|.++.+ |..+..++ +++|++++
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 233344444444333 2355667788888888887754 55555554 88888888
Q ss_pred CccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccc
Q psy3567 201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQ 257 (277)
Q Consensus 201 n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 257 (277)
|+++.++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++...+.
T Consensus 282 n~l~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 336 (390)
T 3o6n_A 282 NRLVALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLKLS 336 (390)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCCCC
T ss_pred CcCcccCcccCCCCCCCEEECCCCcce--ecCccccccCcCCEEECCCCccceeCch
Confidence 888888777777888888888888886 6677777788888888888887764433
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.6e-25 Score=196.28 Aligned_cols=217 Identities=22% Similarity=0.279 Sum_probs=180.3
Q ss_pred CCCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC
Q psy3567 13 SSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF 92 (277)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~ 92 (277)
..+++++|++++|.+++..|. .|..+++|++|++++|.++..++ +..+ ++|++|++++|.++.+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~--------------~~~~l~~L~~L~Ls~N~l~~~~~-l~~l-~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAA--------------DLAPFTKLELLNLSSNVLYETLD-LESL-STLRTLDLNNNYVQEL 95 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGG--------------GGTTCTTCCEEECTTSCCEEEEE-CTTC-TTCCEEECCSSEEEEE
T ss_pred cCCCccEEEeeCCcCCCCCHH--------------HHhCCCCCCEEEeeCCCCCCCcc-cccC-CCCCEEEecCCcCCCC
Confidence 345789999999988875443 45778899999999999986665 4444 8999999999988866
Q ss_pred CccccccCCCcEEeccCCcCcccCccccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCccC-ccccC-CCC
Q psy3567 93 PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKF-PTVLF-NLQ 169 (277)
Q Consensus 93 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~-~~~l~-~~~ 169 (277)
|.. ++|++|++++|.+..++.. .+++|++|++++|.+..+ |..++.+++|++|++++|.+..+ |..+. .++
T Consensus 96 ~~~----~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 96 LVG----PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp EEC----TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred CCC----CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 643 7899999999999877543 467899999999999876 44688899999999999999864 55555 689
Q ss_pred CCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567 170 HLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249 (277)
Q Consensus 170 ~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 249 (277)
+|++|++++|.++.++.......+++|++++|+++.+|..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTC
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEEcCCC
Confidence 9999999999999776555444699999999999999988999999999999999997 68888889999999999999
Q ss_pred eeee
Q psy3567 250 LFEM 253 (277)
Q Consensus 250 ~~~~ 253 (277)
++.+
T Consensus 248 ~l~c 251 (487)
T 3oja_A 248 GFHC 251 (487)
T ss_dssp CBCH
T ss_pred CCcC
Confidence 9984
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.8e-24 Score=176.65 Aligned_cols=209 Identities=23% Similarity=0.286 Sum_probs=170.4
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccC-ccccCcccCceeec
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSG 130 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l 130 (277)
+.+++|++++|+++.+++..+..+++|++|++++|++..+++ .+.++++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999999998876433434899999999999987765 6889999999999999998775 57889999999999
Q ss_pred ccccccccch-hhhcCCCCCEEEccCCCCcc--CccccCCCCCCCEEEccCCCCcccCch-hccc-eee----EEEccCC
Q psy3567 131 NCNLIKELPL-SFSKLHNLKHLSLSQNQLNK--FPTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVI----EMNLNKN 201 (277)
Q Consensus 131 ~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~--~~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~----~L~l~~n 201 (277)
++|.+..++. .+..+++|++|++++|.+.. +|..+..+++|++|++++|.++.++.. +..+ .++ ++++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9999987765 58889999999999999986 577888899999999999999976543 3333 244 8999999
Q ss_pred ccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc--ccccccc
Q psy3567 202 QICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA--FQQLDGY 262 (277)
Q Consensus 202 ~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~l~~~ 262 (277)
+++.++.......+|+.|++++|.++ +..+..+..+++|++|++++|++++.. ++.+..|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 99998887667779999999999998 333345688999999999999999754 4444444
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.9e-23 Score=184.34 Aligned_cols=205 Identities=18% Similarity=0.239 Sum_probs=111.4
Q ss_pred CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC
Q psy3567 14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP 93 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 93 (277)
.+++++|++++|.+++. | .++.+++|++|++++|+++.+| +..+ ++|++|++++|+++.++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~---------------~l~~l~~L~~L~Ls~n~l~~~~--~~~l-~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T---------------GIEKLTGLTKLICTSNNITTLD--LSQN-TNLTYLACDSNKLTNLD 101 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T---------------TGGGCTTCSEEECCSSCCSCCC--CTTC-TTCSEEECCSSCCSCCC
T ss_pred cCCCCEEEccCCCcccC-h---------------hhcccCCCCEEEccCCcCCeEc--cccC-CCCCEEECcCCCCceee
Confidence 46788999999988864 2 2345556666666666665554 2333 55666666666655543
Q ss_pred ccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCC-CccCccccCCCCCCC
Q psy3567 94 LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQ-LNKFPTVLFNLQHLD 172 (277)
Q Consensus 94 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~l~~~~~L~ 172 (277)
+.++++|++|++++|.++.++ ++.+++|++|++++|.+..++ ++.+++|++|++++|. +..+ .++.+++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 555566666666666555543 555556666666666555542 4455555555555552 2233 234455555
Q ss_pred EEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCee
Q psy3567 173 VLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251 (277)
Q Consensus 173 ~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~ 251 (277)
+|++++|.++.+| +..+ .+++|++++|+++.++ ++.+++|+.|++++|.++ .+| +..+++|++|++++|.+
T Consensus 174 ~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~--~ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 174 TLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT--EID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCC
T ss_pred EEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc--ccC--ccccCCCCEEEeeCCcC
Confidence 5555555555544 2222 2555555555555442 444555555555555554 233 44455555555555555
Q ss_pred ee
Q psy3567 252 EM 253 (277)
Q Consensus 252 ~~ 253 (277)
++
T Consensus 246 ~~ 247 (457)
T 3bz5_A 246 TE 247 (457)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.7e-23 Score=192.85 Aligned_cols=237 Identities=18% Similarity=0.187 Sum_probs=140.5
Q ss_pred CCceeEecCCCCcCCCCCCce------eeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTI------FVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
+.+++|++++|.+++..|.++ .++.+.++.+ +..|+++++|++|++++|+++.+++..+..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 467888888888877655433 4444554433 245666666677777766666553333333366667777
Q ss_pred cCCCCCcC-CccccccCCCcEEeccCCcCcccC-ccccCcccCceeecccccccccc-hhhhcCCCCC--EEEccCCCCc
Q psy3567 85 SQNKISKF-PLDLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLK--HLSLSQNQLN 159 (277)
Q Consensus 85 ~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~--~L~l~~n~l~ 159 (277)
++|++..+ +..+.++++|++|++++|.+..++ +.+..+++|++|++++|.+..++ ..++.+++|+ .+++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 66666655 334666666777777776666542 33344666777777766666553 3466666666 6666666666
Q ss_pred cCccccCCCC----------------------------------------------------CCCEEEccCCCCcccCch
Q psy3567 160 KFPTVLFNLQ----------------------------------------------------HLDVLDLSFNRIESIPDG 187 (277)
Q Consensus 160 ~~~~~l~~~~----------------------------------------------------~L~~L~l~~n~l~~l~~~ 187 (277)
.+++...... +++.+++++|.++.++..
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 4433222222 344555555555544333
Q ss_pred -hccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567 188 -IGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252 (277)
Q Consensus 188 -~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 252 (277)
+..+ .+++|++++|+++.+|..+..+++|++|++++|.++ +..|..+..+++|++|++++|.+.
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcc
Confidence 3333 366666666666666666666666666666666665 344455666666666666666554
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.4e-23 Score=171.65 Aligned_cols=198 Identities=27% Similarity=0.460 Sum_probs=166.6
Q ss_pred ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccCceeecc
Q psy3567 54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGN 131 (277)
Q Consensus 54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~ 131 (277)
..+.+++++++++.+|..+. ++++.|++++|++..+++ .|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46789999999999887543 679999999999998776 68899999999999999998866 45789999999999
Q ss_pred cccccccch-hhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCC
Q psy3567 132 CNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHIS 207 (277)
Q Consensus 132 ~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~ 207 (277)
+|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|++++|.++.++.. +..+ ++++|++++|+++.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 999998875 47889999999999999998764 466889999999999999988765 4445 4999999999999888
Q ss_pred cC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 208 PD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 208 ~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
.. +..+++|++|++++|.++ ...+..+..+++|+.|++++|++....
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred hhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeCCC
Confidence 75 788999999999999997 333345778899999999999987653
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.6e-23 Score=189.38 Aligned_cols=200 Identities=19% Similarity=0.260 Sum_probs=172.7
Q ss_pred hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc-CC---ccccccCCCcEEeccCCcCcccC---ccccC
Q psy3567 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK-FP---LDLASYQLLKSLTFDQNKIESLP---KDIGT 121 (277)
Q Consensus 49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~-~~---~~~~~l~~L~~L~l~~~~i~~~~---~~~~~ 121 (277)
+....+++.|++++|++..+|..++..+++|++|++++|++.. +| ..+..+++|++|++++|.++.++ ..+..
T Consensus 306 ~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 4556789999999999999999887545999999999999884 32 23678999999999999998775 35888
Q ss_pred cccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccC
Q psy3567 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNK 200 (277)
Q Consensus 122 l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~ 200 (277)
+++|++|++++|.+..+|..+..+++|++|++++|.+..++..+. ++|++|++++|.++.++. .+ .+++|++++
T Consensus 386 l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~~---~l~~L~~L~Ls~ 460 (549)
T 2z81_A 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL---FLPRLQELYISR 460 (549)
T ss_dssp CTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhcc---cCChhcEEECCC
Confidence 999999999999999999889999999999999999998876543 689999999999987653 33 499999999
Q ss_pred CccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 201 n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
|+++.+|. ...+++|++|++++|.++ +..|..+..+++|+.+++++|++.+..
T Consensus 461 N~l~~ip~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 461 NKLKTLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp SCCSSCCC-GGGCTTCCEEECCSSCCC-CCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CccCcCCC-cccCccCCEEecCCCccC-CcCHHHHhcCcccCEEEecCCCccCCC
Confidence 99999987 467899999999999998 566667899999999999999998765
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=3.3e-23 Score=190.91 Aligned_cols=238 Identities=19% Similarity=0.190 Sum_probs=139.9
Q ss_pred CCCCceeEecCCCCcCCCCCC------ceeeeccCCcchh----HhhhccCccCEEEeecCCCC-cCChhHHHhhccccE
Q psy3567 13 SSPSKLTLLLPGKKNRGLIEG------TIFVLKMGNSATK----RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRT 81 (277)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~ 81 (277)
..+++++|++++|.++ .+|. .+..+.+.++.+. ..+..+++|++|++++|.+. .+|...+..+++|++
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 3456777777777766 3443 3345555554432 45666677777777777665 555443333366777
Q ss_pred EEccCCCCCcC---CccccccCCCcEEeccCCcCccc-CccccCcccCceeeccccccccc-c-hhhhcCCCCCEEEccC
Q psy3567 82 LDISQNKISKF---PLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKEL-P-LSFSKLHNLKHLSLSQ 155 (277)
Q Consensus 82 L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l-~-~~~~~l~~L~~L~l~~ 155 (277)
|++++|++..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+... + ..+..+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 77777766643 34566667777777777766644 44566666666776666666533 2 2356666666666666
Q ss_pred CCCccC-ccccCCCCCCCEEEccCCCCcc--cC--chhccc-eeeEEEccCCccCcCC-cCccCCCCCCEEEcCCCcccc
Q psy3567 156 NQLNKF-PTVLFNLQHLDVLDLSFNRIES--IP--DGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAI 228 (277)
Q Consensus 156 n~l~~~-~~~l~~~~~L~~L~l~~n~l~~--l~--~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~ 228 (277)
|.+... +..+..+++|++|++++|.++. ++ ..+..+ .+++|++++|+++.++ ..+..+++|+.|++++|.++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~- 513 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT- 513 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC-
Confidence 666643 3445556666666666666653 22 223333 3666666666666543 44666666666666666665
Q ss_pred CccCccccCCCCccEEEcCCCeeee
Q psy3567 229 NAIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 229 ~~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
+..|..+.+++.+ +|++++|.++.
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred cCChhHhCccccc-EEECcCCcccc
Confidence 4445555555555 55555555553
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.8e-23 Score=177.54 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=169.5
Q ss_pred CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhh----ccccEEEccCCCC
Q psy3567 14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELK----AVLRTLDISQNKI 89 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~----~~L~~L~l~~~~i 89 (277)
.+++++|++++|.+++..|..+. +..+++|++|++++|+++.+|+.+..+. ++|++|++++|++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l 161 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLL------------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSS------------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred cCCccEEEccCCcccchhHHHHH------------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence 45788888888888887776541 2668999999999999998887666652 7999999999999
Q ss_pred CcCC-ccccccCCCcEEeccCCcCcc---cCccc--cCcccCceeecccccccccc---h-hhhcCCCCCEEEccCCCCc
Q psy3567 90 SKFP-LDLASYQLLKSLTFDQNKIES---LPKDI--GTLEKLENVSGNCNLIKELP---L-SFSKLHNLKHLSLSQNQLN 159 (277)
Q Consensus 90 ~~~~-~~~~~l~~L~~L~l~~~~i~~---~~~~~--~~l~~L~~L~l~~n~~~~l~---~-~~~~l~~L~~L~l~~n~l~ 159 (277)
..++ ..+.++++|++|++++|++.. ++..+ ..+++|++|++++|.+..++ . .+..+++|++|++++|.+.
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 9776 579999999999999999763 34444 78999999999999998543 2 3567899999999999999
Q ss_pred cCc--cccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567 160 KFP--TVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 160 ~~~--~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~ 227 (277)
..+ ..+..+++|++|++++|.++.+|..+. ..+++|++++|+++.+|. +..+++|+.|++++|+++
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred cccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 754 345568999999999999999998877 569999999999999977 889999999999999987
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=3.1e-23 Score=193.56 Aligned_cols=215 Identities=20% Similarity=0.250 Sum_probs=147.7
Q ss_pred HhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCc---ccCccccC
Q psy3567 47 RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIE---SLPKDIGT 121 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~---~~~~~~~~ 121 (277)
..|..+++|++|++++|.+. .+|+..+..+++|++|++++|++..++ ..+..+++|++|++++|.+. .+|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 44556666666666666665 344333333366666666666665443 34666677777777776654 34667777
Q ss_pred cccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCcc---------ccCCCCCCCEEEccCCCCcccCch-hcc
Q psy3567 122 LEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT---------VLFNLQHLDVLDLSFNRIESIPDG-IGK 190 (277)
Q Consensus 122 l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~---------~l~~~~~L~~L~l~~n~l~~l~~~-~~~ 190 (277)
+++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|++++|.++.+|.. +..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 8888888888888877764 47778888888888888775422 256678888888888888877764 444
Q ss_pred c-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCcccc-CCCCccEEEcCCCeeeecc--ccccccc
Q psy3567 191 M-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEGNLFEMKA--FQQLDGY 262 (277)
Q Consensus 191 ~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~--~~~l~~~ 262 (277)
+ .+++|++++|+++.+|.. +..+++|+.|++++|.++ +..+..+. .+++|+.+++++|++.+.. +..+..|
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC-BCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC-ccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence 4 488888888888888776 567888888888888887 33334455 5788888888888888654 2444433
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=7.9e-23 Score=182.91 Aligned_cols=196 Identities=21% Similarity=0.366 Sum_probs=117.6
Q ss_pred hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc---------------------cccccCCCcEEec
Q psy3567 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL---------------------DLASYQLLKSLTF 107 (277)
Q Consensus 49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---------------------~~~~l~~L~~L~l 107 (277)
+..+++|++|++++|.++.++. +..+ ++|++|++++|.+..+++ .+..+++|++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV-LAKL-TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 250 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGC-TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred hccCCCCCEEECcCCcCCCChh-hccC-CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEEC
Confidence 4445555555555555554432 2222 455555555555443332 3444555555555
Q ss_pred cCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCch
Q psy3567 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG 187 (277)
Q Consensus 108 ~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~ 187 (277)
++|.+...+. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++.
T Consensus 251 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 251 ANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-
T ss_pred CCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-
Confidence 5555554433 5555566666666666555543 5556666666666666665543 5556677777777776665544
Q ss_pred hccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 188 IGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 188 ~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
+..+ ++++|++++|+++.+ ..+..+++|+.|++++|.++ +..| +..+++|++|++++|.+++.
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS-DLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC-ccch--hhcCCCCCEEeccCCcccCC
Confidence 3333 477777777777766 35667778888888888776 3333 67778888888888887763
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.6e-23 Score=187.95 Aligned_cols=130 Identities=23% Similarity=0.299 Sum_probs=80.2
Q ss_pred ccCceeecccccccc-cchhhhcCCCCCEEEccCCCCccCc---cccCCCCCCCEEEccCCCCcc-cCchhc--------
Q psy3567 123 EKLENVSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQLNKFP---TVLFNLQHLDVLDLSFNRIES-IPDGIG-------- 189 (277)
Q Consensus 123 ~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l~~n~l~~~~---~~l~~~~~L~~L~l~~n~l~~-l~~~~~-------- 189 (277)
++|++|++++|.+.. +|..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++. +|....
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 344455555555443 3444555556666666666555432 234455666666666666553 443210
Q ss_pred --------------c--ceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCcc-ccCCCCccEEEcCCCeee
Q psy3567 190 --------------K--MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTC-ILTSSNVCTLNVEGNLFE 252 (277)
Q Consensus 190 --------------~--~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~l~l~~n~~~ 252 (277)
. ..+++|++++|+++.+|..+..+++|++|++++|.++ .+|.. +..+++|+++++++|+++
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK--SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC--CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC--CCCHHHHhcCCCCCEEEecCCCcC
Confidence 0 2366777777777777777667778888888888876 56665 777788888888888877
Q ss_pred ec
Q psy3567 253 MK 254 (277)
Q Consensus 253 ~~ 254 (277)
+.
T Consensus 511 c~ 512 (562)
T 3a79_B 511 CT 512 (562)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.1e-23 Score=174.79 Aligned_cols=196 Identities=21% Similarity=0.313 Sum_probs=173.4
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCccc-CccccCcccCceeecccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCN 133 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n 133 (277)
++++++++.++.+|..+ ++++++|++++|.++.+++ .+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 68999999999999754 3789999999999998775 589999999999999999987 678999999999999999
Q ss_pred c-cccc-chhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCc
Q psy3567 134 L-IKEL-PLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISP 208 (277)
Q Consensus 134 ~-~~~l-~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~ 208 (277)
. +..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++.. +..+ .+++|++++|+++.++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 7877 56799999999999999999977 45677899999999999999987765 5555 49999999999999887
Q ss_pred C-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 209 D-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 209 ~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
. +..+++|++|++++|.++ +..|..+..+++|++|++++|.++...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred HHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCC
Confidence 5 889999999999999998 566889999999999999999988644
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.1e-23 Score=187.81 Aligned_cols=226 Identities=18% Similarity=0.225 Sum_probs=183.7
Q ss_pred CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCC-hhHHHhh--ccccEEEccCCCCCcC
Q psy3567 16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFP-DEMNELK--AVLRTLDISQNKISKF 92 (277)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~--~~L~~L~l~~~~i~~~ 92 (277)
++++|++++|.+.|.+|..+... ...+++.|+.++++++.+ .+| ..+.... .+++.|++++|.+...
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~---------~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDY---------SGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCC---------CSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred cccEEEeecccccCccccchhhc---------ccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc
Confidence 45555555555555555444221 126789999999999999 888 4444432 4599999999988754
Q ss_pred CccccccCCCcEEeccCCcCcc-cCccccCcccCceeeccccccccc---chhhhcCCCCCEEEccCCCCcc-Cccc-cC
Q psy3567 93 PLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLENVSGNCNLIKEL---PLSFSKLHNLKHLSLSQNQLNK-FPTV-LF 166 (277)
Q Consensus 93 ~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~l~~n~~~~l---~~~~~~l~~L~~L~l~~n~l~~-~~~~-l~ 166 (277)
+. +..+++|++|++++|.+.. .|..++.+++|++|++++|.+..+ |..+..+++|++|++++|.+.. +|.. +.
T Consensus 318 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 318 LC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred cc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 42 2688999999999999986 678899999999999999999854 4678999999999999999997 8765 66
Q ss_pred CCCCCCEEEccCCCCc-ccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCcc-ccCCCCccEE
Q psy3567 167 NLQHLDVLDLSFNRIE-SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTC-ILTSSNVCTL 244 (277)
Q Consensus 167 ~~~~L~~L~l~~n~l~-~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~l 244 (277)
.+++|++|++++|.++ .+|..+. ..+++|++++|+++.+|..+..+++|++|++++|+++ .+|.. +..+++|+++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK--SVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEE
T ss_pred cCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC--ccCHHHhccCCcccEE
Confidence 7899999999999997 4554443 3599999999999999999889999999999999998 67775 8889999999
Q ss_pred EcCCCeeeecc
Q psy3567 245 NVEGNLFEMKA 255 (277)
Q Consensus 245 ~l~~n~~~~~~ 255 (277)
++++|++++..
T Consensus 474 ~l~~N~~~c~c 484 (520)
T 2z7x_B 474 WLHTNPWDCSC 484 (520)
T ss_dssp ECCSSCBCCCH
T ss_pred ECcCCCCcccC
Confidence 99999999754
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.3e-23 Score=185.03 Aligned_cols=203 Identities=19% Similarity=0.280 Sum_probs=174.1
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCc-cccCcccCceeec
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSG 130 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l 130 (277)
+.++.|++++|+++.+++..+..+++|++|++++|++..++ ..|.++++|++|++++|++..++. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57899999999999887555555599999999999999776 468999999999999999998865 6889999999999
Q ss_pred ccccccccch-hhhcCCCCCEEEccCC-CCccCcc-ccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcC-
Q psy3567 131 NCNLIKELPL-SFSKLHNLKHLSLSQN-QLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHI- 206 (277)
Q Consensus 131 ~~n~~~~l~~-~~~~l~~L~~L~l~~n-~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l- 206 (277)
++|.+..++. .|..+++|++|++++| .+..++. .+..+++|++|++++|.++.+|......++++|++++|+++.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence 9999998875 6889999999999984 5556654 5678999999999999999888643333699999999999987
Q ss_pred CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeeccc
Q psy3567 207 SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAF 256 (277)
Q Consensus 207 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 256 (277)
+..+..+++|+.|++++|.++ +..+..+..+++|++|++++|.++....
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred hhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 456999999999999999998 5667788999999999999999986443
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=9.1e-23 Score=182.50 Aligned_cols=231 Identities=23% Similarity=0.329 Sum_probs=113.0
Q ss_pred CCCceeEecCCCCcCCCCC----CceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCC
Q psy3567 14 SPSKLTLLLPGKKNRGLIE----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQN 87 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 87 (277)
.+++++|++++|.+.+..+ +.+.++.+.++.+. ..+..+++|++|++++|.++.+++ +..+ ++|++|++++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~n 144 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNL-TNLNRLELSSN 144 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTC-TTCSEEEEEEE
T ss_pred hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCC-CCCCEEECCCC
Confidence 4567777777777665533 33445555544332 226666666666666666666554 3333 56666666665
Q ss_pred CCCcCCc--------------------cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch-------
Q psy3567 88 KISKFPL--------------------DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL------- 140 (277)
Q Consensus 88 ~i~~~~~--------------------~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~------- 140 (277)
.+..++. .+.++++|++|++++|.+..++ .+..+++|++|++++|.+..++.
T Consensus 145 ~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 223 (466)
T 1o6v_A 145 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNL 223 (466)
T ss_dssp EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTC
T ss_pred ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCC
Confidence 5543321 1334445555555555544432 24444445555554444443322
Q ss_pred --------------hhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCc
Q psy3567 141 --------------SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICH 205 (277)
Q Consensus 141 --------------~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~ 205 (277)
.+..+++|+.|++++|.+..++. +..+++|++|++++|.++.++. +..+ .+++|++++|+++.
T Consensus 224 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED 301 (466)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred CEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence 23333444444444444433322 3344444444444444444333 2222 25555555555554
Q ss_pred CCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567 206 ISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 206 l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
++. +..+++|+.|++++|.++ +..| +..+++|++|++++|.+++
T Consensus 302 ~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 302 ISP-ISNLKNLTYLTLYFNNIS-DISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSCCS-CCGG--GGGCTTCCEEECCSSCCCC
T ss_pred chh-hcCCCCCCEEECcCCcCC-Cchh--hccCccCCEeECCCCccCC
Confidence 443 445555555555555554 2221 4455556666666655543
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=2.9e-23 Score=185.05 Aligned_cols=202 Identities=18% Similarity=0.239 Sum_probs=172.3
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCc-cccCcccCceeec
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSG 130 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l 130 (277)
+.+++|++++|+++.+++..+..+++|+.|++++|++..++ ..|.++++|++|++++|.+..++. .+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999876554444599999999999999765 568999999999999999998865 5888999999999
Q ss_pred ccccccccch-hhhcCCCCCEEEccC-CCCccCcc-ccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCC
Q psy3567 131 NCNLIKELPL-SFSKLHNLKHLSLSQ-NQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHIS 207 (277)
Q Consensus 131 ~~n~~~~l~~-~~~~l~~L~~L~l~~-n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~ 207 (277)
++|.+..++. .|..+++|++|++++ +.+..++. .+..+++|++|++++|.++.+|.......+++|++++|+++.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence 9999998875 688999999999998 45666654 56789999999999999998876433335999999999999774
Q ss_pred -cCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 208 -PDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 208 -~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
..+..+++|+.|++++|.++ +..+..+..+++|++|++++|.++...
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccC
Confidence 56899999999999999998 566778899999999999999988644
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=9.3e-23 Score=187.62 Aligned_cols=226 Identities=23% Similarity=0.255 Sum_probs=144.4
Q ss_pred CCceeEecCCCCcCCCC--CCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC
Q psy3567 15 PSKLTLLLPGKKNRGLI--EGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF 92 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~ 92 (277)
+++++|++++|.++... ++.+..+.+.++.+...-..+++|++|++++|.++.+|. .+++|+.|++++|+++.+
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l 136 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL 136 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCC
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcC
Confidence 46666777777665321 234455555555443222255666666666666666665 225666666666666666
Q ss_pred CccccccCCCcEEeccCCcCcccCccccC---c--------------ccCceeecccccccccchhhhcCCCCCEEEccC
Q psy3567 93 PLDLASYQLLKSLTFDQNKIESLPKDIGT---L--------------EKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQ 155 (277)
Q Consensus 93 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~---l--------------~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~ 155 (277)
|.. +++|++|++++|.+..+|..+.. + ++|++|++++|.+..+|.. +++|+.|++++
T Consensus 137 p~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~ 210 (622)
T 3g06_A 137 PVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYN 210 (622)
T ss_dssp CCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcC
Confidence 553 36677777777776655432211 1 3344444444444443321 23444555555
Q ss_pred CCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccc
Q psy3567 156 NQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCI 235 (277)
Q Consensus 156 n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 235 (277)
|.+..+|.. +++|++|++++|.++.+|... .++++|++++|+++.+|. .+++|+.|++++|.++ .+|..+
T Consensus 211 N~l~~l~~~---~~~L~~L~Ls~N~L~~lp~~l--~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~--~lp~~l 280 (622)
T 3g06_A 211 NRLTSLPAL---PSGLKELIVSGNRLTSLPVLP--SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT--RLPESL 280 (622)
T ss_dssp SCCSSCCCC---CTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC--SCCGGG
T ss_pred CcccccCCC---CCCCCEEEccCCccCcCCCCC--CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC--cCCHHH
Confidence 554444432 367888888888888877322 248899999999998887 5688999999999997 789999
Q ss_pred cCCCCccEEEcCCCeeeeccccccc
Q psy3567 236 LTSSNVCTLNVEGNLFEMKAFQQLD 260 (277)
Q Consensus 236 ~~~~~L~~l~l~~n~~~~~~~~~l~ 260 (277)
.++++|+.|++++|++++..+..+.
T Consensus 281 ~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp GGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred hhccccCEEEecCCCCCCcCHHHHH
Confidence 9999999999999999976655443
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.5e-23 Score=187.51 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=71.5
Q ss_pred CCceeEecCCCCcCCCCC------CceeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIE------GTIFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~------~~~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
+++++|++++|.+++..+ ..+..+.+.++.+ +..|..+++|++|++++|+++.+|.. .+ ++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l-~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PT-VNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CC-CCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--cc-CCccEEec
Confidence 567777777777766544 3344555555444 24566666666666666666666654 33 66666676
Q ss_pred cCCCCCc--CCccccccCCCcEEeccCCcCcccCccccCcccC--ceeecccccc
Q psy3567 85 SQNKISK--FPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKL--ENVSGNCNLI 135 (277)
Q Consensus 85 ~~~~i~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L--~~L~l~~n~~ 135 (277)
++|++.. +|..+.++++|++|++++|.+.. ..+..+++| +++++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 6666664 34566666667777766666654 244555555 6666666655
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.9e-22 Score=179.81 Aligned_cols=197 Identities=22% Similarity=0.302 Sum_probs=97.3
Q ss_pred ceeEecCCCCcCC--CCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567 17 KLTLLLPGKKNRG--LIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL 94 (277)
Q Consensus 17 l~~l~l~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 94 (277)
+++|++++|++++ .+++.+..+.+..+.+...-...++|++|++++|+++.++.. +++|++|++++|+++.+|
T Consensus 73 l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 73 AHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp CSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-
T ss_pred CCEEEecCCccccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-
Confidence 3556666666555 444555555555544432112234555666666655554431 145566666666555555
Q ss_pred cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCcc-----------
Q psy3567 95 DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT----------- 163 (277)
Q Consensus 95 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~----------- 163 (277)
.+.++++|++|++++|.+..+|... .+|++|++++|.+..+| .+..+++|++|++++|.+..+|.
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG 223 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECc
Confidence 3555555666666655555544322 24555555555555544 34455555555555554444432
Q ss_pred --------ccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567 164 --------VLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 164 --------~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~ 227 (277)
.++.+++|++|++++|.++.+|... ..+++|++++|+++.+|... ++|+.|++++|.++
T Consensus 224 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~l~~~~---~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 224 NNILEELPELQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFS 290 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS
T ss_pred CCcCCcccccCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccccCccc---CcCCEEECcCCccC
Confidence 2344444455555544444443321 12444555555544444322 44555555555544
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=9e-23 Score=170.20 Aligned_cols=199 Identities=28% Similarity=0.317 Sum_probs=168.5
Q ss_pred CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP- 93 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~- 93 (277)
+.+++|++++|.+++..+. .|..+++|++|++++|+++.+++..+..+++|++|++++|++..++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~--------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY--------------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TTCCEEECTTCCCCEECTT--------------TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccEEECCCCcccccCHh--------------HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 4678888888877654332 4677899999999999999888755554599999999999999766
Q ss_pred ccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccc--cchhhhcCCCCCEEEccCCCCccCc-cccCCCC
Q psy3567 94 LDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE--LPLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQ 169 (277)
Q Consensus 94 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~--l~~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~ 169 (277)
..+.++++|++|++++|.+..++. .++.+++|++|++++|.+.. +|..+..+++|++|++++|.+..++ ..+..+.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 468999999999999999998765 78999999999999999986 6788999999999999999999775 3454445
Q ss_pred CCC----EEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 170 HLD----VLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 170 ~L~----~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
+++ ++++++|.++.++...... ++++|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 555 8999999999887665444 699999999999999876 688999999999999998
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=7.4e-23 Score=167.20 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=161.7
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCC-CCcCCc-cccccCCCcEEeccC-CcCcccC-ccccCcccCcee
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNK-ISKFPL-DLASYQLLKSLTFDQ-NKIESLP-KDIGTLEKLENV 128 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~-~~~~l~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~L 128 (277)
+.+++|++++|+++.+|+..+..+++|++|++++|+ ++.+++ .|.++++|++|++++ |.+..++ ..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999998887555545899999999997 887776 688999999999998 8998886 478889999999
Q ss_pred ecccccccccchhhhcCCCCC---EEEccCC-CCccCcc-ccCCCCCCC-EEEccCCCCcccCchhccc-eeeEEEccCC
Q psy3567 129 SGNCNLIKELPLSFSKLHNLK---HLSLSQN-QLNKFPT-VLFNLQHLD-VLDLSFNRIESIPDGIGKM-KVIEMNLNKN 201 (277)
Q Consensus 129 ~l~~n~~~~l~~~~~~l~~L~---~L~l~~n-~l~~~~~-~l~~~~~L~-~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n 201 (277)
++++|.+..+|. +..+++|+ +|++++| .+..++. .+..+++|+ ++++++|.++.+|...+.. ++++|++++|
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 999999998886 88888888 9999999 8888865 467789999 9999999999888765444 5999999999
Q ss_pred c-cCcCCcC-ccCC-CCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567 202 Q-ICHISPD-ISEC-VRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249 (277)
Q Consensus 202 ~-l~~l~~~-l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 249 (277)
+ ++.++.. +..+ ++|+.|++++|.++ .+|.. .+++++.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~--~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT--ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC--CCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc--cCChh--HhccCceeeccCc
Confidence 5 9988754 7788 89999999999997 56654 6778999998876
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.8e-22 Score=182.60 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=139.5
Q ss_pred ccccEEEccCCCCCcCCccc-cccCCCcEEeccCCcCccc-C---ccccCcccCceeecccccccccc---hhhhcCCCC
Q psy3567 77 AVLRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESL-P---KDIGTLEKLENVSGNCNLIKELP---LSFSKLHNL 148 (277)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~-~~l~~L~~L~l~~~~i~~~-~---~~~~~l~~L~~L~l~~n~~~~l~---~~~~~l~~L 148 (277)
++++.|++++|.+..+|..+ .++++|++|++++|.+... + ..++.+++|++|++++|.+..++ ..+..+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 45666777777776677664 5688899999999988743 2 34677888999999999888765 347888999
Q ss_pred CEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCcccc
Q psy3567 149 KHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAI 228 (277)
Q Consensus 149 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~ 228 (277)
++|++++|.+..+|..+..+++|++|++++|.++.+|..+. ..+++|++++|+++.++ ..+++|++|++++|.++
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~-~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC-TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc-CCceEEECCCCChhhhc---ccCChhcEEECCCCccC-
Confidence 99999999999888888888899999999999887776543 25889999999988765 46789999999999997
Q ss_pred CccCccccCCCCccEEEcCCCeeeeccc
Q psy3567 229 NAIPTCILTSSNVCTLNVEGNLFEMKAF 256 (277)
Q Consensus 229 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 256 (277)
.+|. ...+++|++|++++|.+++...
T Consensus 465 -~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 465 -TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp -SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred -cCCC-cccCccCCEEecCCCccCCcCH
Confidence 7776 4678999999999999986543
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2e-22 Score=170.90 Aligned_cols=189 Identities=22% Similarity=0.355 Sum_probs=166.6
Q ss_pred CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL 94 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 94 (277)
+++++|++++|.+... ..+..+++|++|++++|.++.+++ +..+ ++|++|++++|++..++
T Consensus 41 ~~L~~L~l~~~~i~~l----------------~~~~~l~~L~~L~L~~n~i~~~~~-~~~l-~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI----------------EGVQYLNNLIGLELKDNQITDLAP-LKNL-TKITELELSGNPLKNVS- 101 (308)
T ss_dssp HTCCEEECTTSCCCCC----------------TTGGGCTTCCEEECCSSCCCCCGG-GTTC-CSCCEEECCSCCCSCCG-
T ss_pred CCcCEEEeeCCCccCc----------------hhhhccCCCCEEEccCCcCCCChh-HccC-CCCCEEEccCCcCCCch-
Confidence 5788888888876642 236789999999999999999887 5555 99999999999999875
Q ss_pred cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEE
Q psy3567 95 DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL 174 (277)
Q Consensus 95 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L 174 (277)
.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence 68899999999999999998764 8899999999999999998875 8899999999999999998876 8889999999
Q ss_pred EccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567 175 DLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 175 ~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~ 227 (277)
++++|.++.++. +..+ .+++|++++|+++.++. +..+++|+.|++++|+++
T Consensus 179 ~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 179 KADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred ECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 999999998876 4444 59999999999998884 889999999999999997
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.7e-22 Score=178.73 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=126.9
Q ss_pred CCCceeEecCCCCcCC--CCCCceeeeccCCcchh--HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCC
Q psy3567 14 SPSKLTLLLPGKKNRG--LIEGTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKI 89 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~--~~~~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i 89 (277)
.+++++|++++|.+++ ..+..+..+.+..+.+. ..+..+++|++|++++|+++.+|... ++|++|++++|++
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~----~~L~~L~l~~n~l 227 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNIL 227 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC----TTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc----CcccEEECcCCcC
Confidence 3456666666666654 22234555555554432 24566677777777777777665422 4677777777777
Q ss_pred CcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccc---c-
Q psy3567 90 SKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV---L- 165 (277)
Q Consensus 90 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~---l- 165 (277)
..+| .+..+++|++|++++|++..+|.. .++|++|++++|.+..+|.. .++|++|++++|.+..++.. +
T Consensus 228 ~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 228 EELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLY 300 (454)
T ss_dssp SSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred Cccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCC
Confidence 7666 367777777777777777766542 35667777777766665542 24566666666665543211 0
Q ss_pred ------------CCC-CCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccC--c
Q psy3567 166 ------------FNL-QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAIN--A 230 (277)
Q Consensus 166 ------------~~~-~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~--~ 230 (277)
..+ ++|++|++++|.++.+|... ..+++|++++|+++.+|. .+++|++|++++|+++ + .
T Consensus 301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~-~l~~ 374 (454)
T 1jl5_A 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP--PRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLR-EFPD 374 (454)
T ss_dssp EEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred EEECcCCcCCcccCCcCcCCEEECCCCccccccccC--CcCCEEECCCCccccccc---hhhhccEEECCCCCCC-cCCC
Confidence 111 35666666666666655432 236777777777777766 3567777888777776 4 4
Q ss_pred cCccccCC-------------CCccEEEcCCCeeee
Q psy3567 231 IPTCILTS-------------SNVCTLNVEGNLFEM 253 (277)
Q Consensus 231 ~~~~~~~~-------------~~L~~l~l~~n~~~~ 253 (277)
+|..+..+ ++|++|++++|.+++
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCTTCCEEECCC------------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 56666555 677778888777765
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=3.7e-22 Score=186.33 Aligned_cols=235 Identities=20% Similarity=0.234 Sum_probs=116.5
Q ss_pred CCceeEecCCCCcCCCCCCc------eeeeccCCcch----hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIEGT------IFVLKMGNSAT----KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~------~~~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
+++++|++++|.+++..+.. +..+.+..+.+ +..|+++++|++|++++|+++.+|+..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57788888888877655432 23333333322 234455555555555555555555432222255555555
Q ss_pred cCCCCCcCCc-cccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccchh-h--hcCCCCCEEEccCCCCc
Q psy3567 85 SQNKISKFPL-DLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPLS-F--SKLHNLKHLSLSQNQLN 159 (277)
Q Consensus 85 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~~-~--~~l~~L~~L~l~~n~l~ 159 (277)
++|++..+++ .|.++++|++|++++|.+... +..++.+++|++|++++|.+..++.. + ..+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 5555554432 355555555555555555433 23444555555555555555444321 2 22345555555555544
Q ss_pred cCcc-ccCCC---------------------------CCCCEEEccCCCCccc-Cchhccc---eeeEEEccCCccCcCC
Q psy3567 160 KFPT-VLFNL---------------------------QHLDVLDLSFNRIESI-PDGIGKM---KVIEMNLNKNQICHIS 207 (277)
Q Consensus 160 ~~~~-~l~~~---------------------------~~L~~L~l~~n~l~~l-~~~~~~~---~l~~L~l~~n~l~~l~ 207 (277)
.+++ .+..+ ++|+.|++++|.++.. |.++... .+++|++++|+++.++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 3321 12111 3344444444444422 2223222 1556666666665443
Q ss_pred -cCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCe
Q psy3567 208 -PDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250 (277)
Q Consensus 208 -~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~ 250 (277)
..++.+++|+.|++++|.++ +..|..+..+++|+.+++++|.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBS-EECTTTTTTCTTCCEEECTTCB
T ss_pred cccccCcccccEeeCCCCccC-ccChhhhcCCCCccEEeccchh
Confidence 33555666666666666665 3445555666666666666543
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=6.8e-23 Score=188.83 Aligned_cols=234 Identities=20% Similarity=0.188 Sum_probs=170.3
Q ss_pred CCCceeEecCCCCcCCCCC-----CceeeeccCCcchh--HhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEcc
Q psy3567 14 SPSKLTLLLPGKKNRGLIE-----GTIFVLKMGNSATK--RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDIS 85 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~-----~~~~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~ 85 (277)
.+++++++++++.+... | ..+..+.+.++.+. +.+ .++.|++|++++|+.. .++ +..+ ++|++|+++
T Consensus 284 l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~ls 358 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYL-EDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK--KVAL-PSLSYLDLS 358 (606)
T ss_dssp GTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECC--CCCC-TTCCEEECC
T ss_pred CCCCCEEEecCccchhh-hhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchh--hccC-CCCCEEECc
Confidence 35667777777766432 2 12333333333321 122 5556666666666332 221 1223 677777777
Q ss_pred CCCCCcC---CccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccc--hhhhcCCCCCEEEccCCCCcc
Q psy3567 86 QNKISKF---PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNK 160 (277)
Q Consensus 86 ~~~i~~~---~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~--~~~~~l~~L~~L~l~~n~l~~ 160 (277)
+|+++.+ |..+..+++|++|++++|.+..++..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 7777644 56677888888888888888888888888888999998888887654 367888899999999998885
Q ss_pred -CccccCCCCCCCEEEccCCCCcc--cCchhccce-eeEEEccCCccCcCC-cCccCCCCCCEEEcCCCccccCccCccc
Q psy3567 161 -FPTVLFNLQHLDVLDLSFNRIES--IPDGIGKMK-VIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCI 235 (277)
Q Consensus 161 -~~~~l~~~~~L~~L~l~~n~l~~--l~~~~~~~~-l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 235 (277)
.|..+..+++|++|++++|.++. +|..+..++ +++|++++|+++.++ ..+..+++|++|++++|.++ +..|..+
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~ 517 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHY 517 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CEEGGGT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC-CcCHHHc
Confidence 46667788999999999998884 577676664 899999999998664 45888999999999999998 5668888
Q ss_pred cCCCCccEEEcCCCeeee
Q psy3567 236 LTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 236 ~~~~~L~~l~l~~n~~~~ 253 (277)
..+++|++|++++|.++.
T Consensus 518 ~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCTTCCEEECTTSCCCC
T ss_pred cCCCcCCEEECCCCcCcc
Confidence 899999999999998874
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.6e-22 Score=167.84 Aligned_cols=196 Identities=22% Similarity=0.297 Sum_probs=167.1
Q ss_pred CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC
Q psy3567 14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP 93 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 93 (277)
.++++++++++++++. +|..+ .+.+++|++++|.++.+++..+..+++|++|++++|.++.++
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~----------------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDL----------------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCC----------------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred cCCccEEECCCCCCCc-CCCCC----------------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc
Confidence 4578899999998874 44433 257899999999999776544444489999999999998776
Q ss_pred ccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCccCccc-cCCCCCC
Q psy3567 94 LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHL 171 (277)
Q Consensus 94 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L 171 (277)
.. ..+++|++|++++|.+..+|..+..+++|++|++++|.+..++ ..|..+++|++|++++|.+..++.. +..+++|
T Consensus 72 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 64 7889999999999999999988899999999999999999887 4689999999999999999988765 4578999
Q ss_pred CEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567 172 DVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 172 ~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~ 227 (277)
++|++++|.++.+|... ..+ ++++|++++|+++.+|..+...++|+.+++++|++.
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99999999999888765 334 599999999999999999888899999999999987
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=2.9e-23 Score=179.19 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=168.1
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCcc-ccCcccCceeec
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSG 130 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l 130 (277)
+++++|++++|+++.+++..+..+++|++|++++|+++.++ ..+.++++|++|++++|.+..++.. ++.+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 47899999999999888744444499999999999999765 4689999999999999999988765 889999999999
Q ss_pred ccccccccch--hhhcCCCCCEEEccCC-CCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccC
Q psy3567 131 NCNLIKELPL--SFSKLHNLKHLSLSQN-QLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQIC 204 (277)
Q Consensus 131 ~~n~~~~l~~--~~~~l~~L~~L~l~~n-~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~ 204 (277)
++|.+..++. .+..+++|++|++++| .+..+ +..+..+++|++|++++|.++.+ |..+..+ ++++|++++|+++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999998876 6889999999999998 46666 45677899999999999999865 6667666 4999999999999
Q ss_pred cCCcC-ccCCCCCCEEEcCCCccccC------------------------------ccCccccCCCCccEEEcCCCeeee
Q psy3567 205 HISPD-ISECVRLKILRLEENCLAIN------------------------------AIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 205 ~l~~~-l~~~~~L~~L~l~~n~~~~~------------------------------~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
.++.. +..+++|+.|++++|.++.. .+|..+..+++|++|++++|.++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 88876 44588999999999998721 133446678899999999998874
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=6e-22 Score=181.14 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCCCEEEccCCCCcc-cCchhccce-eeEEEccCCccCcCC---cCccCCCCCCEEEcCCCccccCccCc-cccCCCC
Q psy3567 167 NLQHLDVLDLSFNRIES-IPDGIGKMK-VIEMNLNKNQICHIS---PDISECVRLKILRLEENCLAINAIPT-CILTSSN 240 (277)
Q Consensus 167 ~~~~L~~L~l~~n~l~~-l~~~~~~~~-l~~L~l~~n~l~~l~---~~l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~ 240 (277)
.+++|++|++++|.++. .|..+..++ +++|++++|+++.++ ..+..+++|+.|++++|.++ +.+|. .+..+++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN-SHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB-SCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC-CccChhhhcCccc
Confidence 44566666666666663 444444443 666666666666543 34566666666666666665 33443 3445566
Q ss_pred ccEEEcCCCeeee
Q psy3567 241 VCTLNVEGNLFEM 253 (277)
Q Consensus 241 L~~l~l~~n~~~~ 253 (277)
|++|++++|.+++
T Consensus 430 L~~L~l~~n~l~~ 442 (562)
T 3a79_B 430 ILVLNLSSNMLTG 442 (562)
T ss_dssp CCEEECCSSCCCG
T ss_pred CCEEECCCCCCCc
Confidence 6666666665544
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.4e-21 Score=162.60 Aligned_cols=195 Identities=27% Similarity=0.407 Sum_probs=166.6
Q ss_pred CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc
Q psy3567 16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD 95 (277)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 95 (277)
...++++++++++. +|..+ .+.+++|++++|+++.+++..+..+++|++|++++|+++.++..
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~----------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI----------------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC----------------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CCCEEEccCCCCCc-cCCCC----------------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 45679999988874 45433 24689999999999988875444449999999999999988775
Q ss_pred -ccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCC
Q psy3567 96 -LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHL 171 (277)
Q Consensus 96 -~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L 171 (277)
|.++++|++|++++|.+..++. .+..+++|++|++++|.+..++. .|..+++|++|++++|.+..++.. +..+++|
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 6889999999999999998865 57889999999999999998764 578999999999999999988765 6789999
Q ss_pred CEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 172 DVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 172 ~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
++|++++|.++.++.. +..+ .+++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 9999999999988765 4445 599999999999998875 788999999999999987
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=8.3e-23 Score=186.74 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=104.4
Q ss_pred ccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccc--hhhhcCCCCCEEEccCCCCcc-CccccCCCCCCC
Q psy3567 96 LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNK-FPTVLFNLQHLD 172 (277)
Q Consensus 96 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~--~~~~~l~~L~~L~l~~n~l~~-~~~~l~~~~~L~ 172 (277)
+..+++|++|++++|.+..++..+..+++|++|++++|.+...+ ..+..+++|++|++++|.+.. .+..+..+++|+
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 34444555555555555444444555666666666666655442 245666677777777776664 344556677777
Q ss_pred EEEccCCCCc--ccCchhccce-eeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCC
Q psy3567 173 VLDLSFNRIE--SIPDGIGKMK-VIEMNLNKNQICHI-SPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG 248 (277)
Q Consensus 173 ~L~l~~n~l~--~l~~~~~~~~-l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 248 (277)
+|++++|.++ .+|..+..++ +++|++++|+++.+ |..+..+++|++|++++|.++ +..+..+.++++|+++++++
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-CCCHHHhhcccCCcEEEecC
Confidence 7777777765 4666665553 77888888888766 556777888888888888877 44455677788888888888
Q ss_pred Ceeeecc
Q psy3567 249 NLFEMKA 255 (277)
Q Consensus 249 n~~~~~~ 255 (277)
|++++..
T Consensus 528 N~~~~~~ 534 (570)
T 2z63_A 528 NPWDCSC 534 (570)
T ss_dssp SCBCCCT
T ss_pred CcccCCC
Confidence 8887653
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.6e-21 Score=162.45 Aligned_cols=175 Identities=27% Similarity=0.430 Sum_probs=82.2
Q ss_pred hccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCcee
Q psy3567 50 ETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENV 128 (277)
Q Consensus 50 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L 128 (277)
..+++++.|+++++.++.++. +..+ ++|++|++++|.+..++ .+..+++|++|++++|.+..++. .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l-~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYL-PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGC-TTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccc-cccC-CCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 444555555555555554442 2223 55555555555554432 34455555555555555554433 24445555555
Q ss_pred ecccccccccchh-hhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccC
Q psy3567 129 SGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQIC 204 (277)
Q Consensus 129 ~l~~n~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~ 204 (277)
++++|.+..++.. +..+++|++|++++|.+..++.. +..+++|++|++++|.++.++... ..+ ++++|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 5555555444332 44455555555555555544332 234455555555555554443321 222 2444444444444
Q ss_pred cCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 205 HISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 205 ~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
.++.. +..+++|+.|++++|++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc
Confidence 44332 344444444444444443
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=170.15 Aligned_cols=200 Identities=18% Similarity=0.170 Sum_probs=158.2
Q ss_pred hccCccCEEEeecCCCCc-CChhHH-HhhccccEEEccCCCCCcC-C----ccccccCCCcEEeccCCcCcccC-ccccC
Q psy3567 50 ETAKKTGVINLSHQGFKE-FPDEMN-ELKAVLRTLDISQNKISKF-P----LDLASYQLLKSLTFDQNKIESLP-KDIGT 121 (277)
Q Consensus 50 ~~~~~L~~L~l~~~~i~~-~~~~~~-~~~~~L~~L~l~~~~i~~~-~----~~~~~l~~L~~L~l~~~~i~~~~-~~~~~ 121 (277)
..++.|++|++++|.+.. .|..++ ...++|++|++++|.+... + ..+..+++|++|++++|.+..++ ..++.
T Consensus 88 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 88 LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 345679999999999884 444441 3338999999999998843 2 22457899999999999998775 57889
Q ss_pred cccCceeecccccccc---cc--hhhhcCCCCCEEEccCCCCccCccc----cCCCCCCCEEEccCCCCccc-Cchhccc
Q psy3567 122 LEKLENVSGNCNLIKE---LP--LSFSKLHNLKHLSLSQNQLNKFPTV----LFNLQHLDVLDLSFNRIESI-PDGIGKM 191 (277)
Q Consensus 122 l~~L~~L~l~~n~~~~---l~--~~~~~l~~L~~L~l~~n~l~~~~~~----l~~~~~L~~L~l~~n~l~~l-~~~~~~~ 191 (277)
+++|++|++++|.+.. ++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.. |..++..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999998653 32 2347888999999999999866542 45678999999999999965 6666554
Q ss_pred ----eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec
Q psy3567 192 ----KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 192 ----~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
.+++|++++|+++.+|..+. ++|++|++++|+++ .+|. +..+++|++|++++|+++.+
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~--~~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN--RAPQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC--SCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC--CCch-hhhCCCccEEECcCCCCCCC
Confidence 58999999999999998774 79999999999998 4444 57789999999999988754
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.5e-21 Score=174.12 Aligned_cols=184 Identities=16% Similarity=0.250 Sum_probs=123.2
Q ss_pred CCCCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc
Q psy3567 12 PSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK 91 (277)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~ 91 (277)
...+++++|++++|.+++. + ++.+++|++|++++|+++.++ +..+ ++|++|++++|+++.
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~----------------~~~l~~L~~L~Ls~N~l~~~~--~~~l-~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-D----------------LSQNTNLTYLACDSNKLTNLD--VTPL-TKLTYLNCDTNKLTK 120 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-C----------------CTTCTTCSEEECCSSCCSCCC--CTTC-TTCCEEECCSSCCSC
T ss_pred cccCCCCEEEccCCcCCeE-c----------------cccCCCCCEEECcCCCCceee--cCCC-CcCCEEECCCCcCCe
Confidence 3457899999999998874 1 345667777777777777664 3344 677777777777776
Q ss_pred CCccccccCCCcEEeccCCcCcccCccccCcccCceeecccc-cccccchhhhcCCCCCEEEccCCCCccCccccCCCCC
Q psy3567 92 FPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCN-LIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH 170 (277)
Q Consensus 92 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n-~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~ 170 (277)
+| +..+++|++|++++|.++.++ ++.+++|++++++.| .+..+ .+..+++|++|++++|.++.+| +..+++
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~ 192 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKL 192 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTT
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCC
Confidence 54 667777777777777776653 566677777777666 33344 3556667777777777766665 556667
Q ss_pred CCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567 171 LDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 171 L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~ 227 (277)
|+.|++++|.++.++ ++.+ .+++|++++|+++.+| ++.+++|+.|++++|.++
T Consensus 193 L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 193 LNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred CCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 777777777666553 3333 3667777777777665 566667777777777665
No 70
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=3e-22 Score=182.28 Aligned_cols=187 Identities=22% Similarity=0.372 Sum_probs=158.8
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccc
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNC 132 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~ 132 (277)
.+++.|++++|.++.+|..++ ++|++|++++|+++.+| ..+++|++|++++|.++.+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 489999999999999987653 78999999999999888 457899999999999998887 655 899999999
Q ss_pred ccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccC
Q psy3567 133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISE 212 (277)
Q Consensus 133 n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~ 212 (277)
|.+..+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. +. .+++.|++++|+|+.+|. +..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP-ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCSSCCC-CC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh-CCCCEEECcCCCCCchhh-HHH
Confidence 99998887 67899999999999998876 56899999999999998888 55 569999999999999988 554
Q ss_pred CCCC-------CEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccccccc
Q psy3567 213 CVRL-------KILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDG 261 (277)
Q Consensus 213 ~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~ 261 (277)
+| +.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ---------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 77 99999999997 78988888999999999999998765554443
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=180.82 Aligned_cols=224 Identities=17% Similarity=0.191 Sum_probs=181.0
Q ss_pred CCCCCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCC
Q psy3567 11 DPSSPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKIS 90 (277)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~ 90 (277)
+...+++++|++++|.+.+ +|.. +..+ .|++|++++|.+..+|.. .+ ++|+.|++++|.+.
T Consensus 278 ~~~l~~L~~L~l~~~~l~~-l~~~--------------~~~~-~L~~L~l~~n~~~~l~~~--~l-~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER-VKDF--------------SYNF-GWQHLELVNCKFGQFPTL--KL-KSLKRLTFTSNKGG 338 (570)
T ss_dssp TGGGTTCSEEEEESCEECS-CCBC--------------CSCC-CCSEEEEESCBCSSCCBC--BC-SSCCEEEEESCBSC
T ss_pred hcCcCcccEEEecCccchh-hhhh--------------hccC-CccEEeeccCcccccCcc--cc-cccCEEeCcCCccc
Confidence 3345789999999998763 4432 3445 789999999999988862 33 88999999999877
Q ss_pred cCCccccccCCCcEEeccCCcCccc---CccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCc--ccc
Q psy3567 91 KFPLDLASYQLLKSLTFDQNKIESL---PKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP--TVL 165 (277)
Q Consensus 91 ~~~~~~~~l~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~--~~l 165 (277)
...+. ..+++|++|++++|.+... +..+..+++|++|++++|.+..++..+..+++|++|++++|.+...+ ..+
T Consensus 339 ~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 339 NAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhh
Confidence 44333 6789999999999998865 56788899999999999998888767888999999999999888653 356
Q ss_pred CCCCCCCEEEccCCCCcc-cCchhccc-eeeEEEccCCccC--cCCcCccCCCCCCEEEcCCCccccCccCccccCCCCc
Q psy3567 166 FNLQHLDVLDLSFNRIES-IPDGIGKM-KVIEMNLNKNQIC--HISPDISECVRLKILRLEENCLAINAIPTCILTSSNV 241 (277)
Q Consensus 166 ~~~~~L~~L~l~~n~l~~-l~~~~~~~-~l~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 241 (277)
..+++|++|++++|.++. .|..+..+ .+++|++++|+++ .+|..+..+++|+.|++++|.++ +..|..+..+++|
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 496 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL 496 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc-cCChhhhhcccCC
Confidence 788999999999998885 45555555 4999999999987 58888999999999999999998 5667888899999
Q ss_pred cEEEcCCCeeeecc
Q psy3567 242 CTLNVEGNLFEMKA 255 (277)
Q Consensus 242 ~~l~l~~n~~~~~~ 255 (277)
++|++++|.+++..
T Consensus 497 ~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 497 QVLNMASNQLKSVP 510 (570)
T ss_dssp CEEECCSSCCSCCC
T ss_pred CEEeCCCCcCCCCC
Confidence 99999999887643
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=5.5e-22 Score=189.45 Aligned_cols=238 Identities=19% Similarity=0.220 Sum_probs=153.1
Q ss_pred CCceeEecCCCCcCCCCCCce------eeeccCCcc----h-hHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEE
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTI------FVLKMGNSA----T-KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLD 83 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~------~~l~~~~~~----~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 83 (277)
+++++|++++|.+++..+.++ ..+.+..+. + +..|.++++|++|++++|+++.+++..+..+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 578889999999887766544 455555541 2 46688888888888888888866433333348888888
Q ss_pred ccCCCCCc-CCcc--ccccCCCcEEeccCCcCccc--CccccCcccCceeeccccccccc-chhhhcC--CC--------
Q psy3567 84 ISQNKISK-FPLD--LASYQLLKSLTFDQNKIESL--PKDIGTLEKLENVSGNCNLIKEL-PLSFSKL--HN-------- 147 (277)
Q Consensus 84 l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l--~~-------- 147 (277)
+++|.+.. +|.. +.++++|++|++++|.+..+ +..++.+++|++|++++|.+..+ +..+..+ ++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 88888874 4443 78888888888888888765 24678888888888888877643 3334333 33
Q ss_pred ----------------------CCEEEccCCCCc-cCccccC------------------------------------C-
Q psy3567 148 ----------------------LKHLSLSQNQLN-KFPTVLF------------------------------------N- 167 (277)
Q Consensus 148 ----------------------L~~L~l~~n~l~-~~~~~l~------------------------------------~- 167 (277)
|+.|++++|.+. ..+..+. .
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 444444444332 1111000 0
Q ss_pred -CCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCC-cCccCCCCCCEEEcCCCccccCccCccccCCCCccE
Q psy3567 168 -LQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCILTSSNVCT 243 (277)
Q Consensus 168 -~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 243 (277)
.++|++|++++|.++.+ +..+..+ .+++|++++|+++.++ ..+..+++|++|++++|.++ +..|..+..+++|++
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCE
Confidence 13566666666666543 2333334 3667777777776554 34666777777777777776 444666777777777
Q ss_pred EEcCCCeeee
Q psy3567 244 LNVEGNLFEM 253 (277)
Q Consensus 244 l~l~~n~~~~ 253 (277)
|++++|.++.
T Consensus 343 L~L~~N~i~~ 352 (844)
T 3j0a_A 343 IDLQKNHIAI 352 (844)
T ss_dssp EECCSCCCCC
T ss_pred EECCCCCCCc
Confidence 7777776654
No 73
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=8.1e-22 Score=179.46 Aligned_cols=187 Identities=28% Similarity=0.392 Sum_probs=163.0
Q ss_pred CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc
Q psy3567 16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD 95 (277)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 95 (277)
+++.|++++|++++ +|..+ .++|++|++++|+|+.+| . .+++|++|++++|+++.+|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l----------------~~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL----------------PPQITVLEITQNALISLP-E---LPASLEYLDACDNRLSTLPE- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC----------------CTTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-
T ss_pred CccEEEeCCCCCCc-cCHhH----------------cCCCCEEECcCCCCcccc-c---ccCCCCEEEccCCCCCCcch-
Confidence 68889999999887 66544 257999999999999999 2 34899999999999999888
Q ss_pred ccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEE
Q psy3567 96 LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLD 175 (277)
Q Consensus 96 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ 175 (277)
+.. +|++|++++|.++.+|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. +. ++|++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence 655 99999999999999887 68899999999999999886 57899999999999999988 55 8999999
Q ss_pred ccCCCCcccCchhcccee-------eEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCC
Q psy3567 176 LSFNRIESIPDGIGKMKV-------IEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238 (277)
Q Consensus 176 l~~n~l~~l~~~~~~~~l-------~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 238 (277)
+++|.++.+|. +.. .+ +.|++++|+|+.+|..+..+++|+.|++++|+++ +.+|..+..+
T Consensus 187 Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l 253 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQ 253 (571)
T ss_dssp CCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC-HHHHHHHHHH
T ss_pred CcCCCCCchhh-HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC-CcCHHHHHHh
Confidence 99999999988 544 67 9999999999999999888999999999999998 6777776654
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=8.2e-22 Score=164.13 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=172.8
Q ss_pred ccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccc
Q psy3567 54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCN 133 (277)
Q Consensus 54 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n 133 (277)
.+..+.+.++.+..... ...+ ++++.|++.+|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~-~~~l-~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT-QNEL-NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEEC-HHHH-TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccc-cccc-cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence 34445666666665433 3445 88999999999988765 4788999999999999998764 7888999999999999
Q ss_pred cccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCcC
Q psy3567 134 LIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISPD 209 (277)
Q Consensus 134 ~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~~ 209 (277)
.+..++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++... ..+ .+++|++++|+++.++..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 9998765 478899999999999999987654 678899999999999999877653 445 499999999999988776
Q ss_pred -ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeeec--cccccccchhhhhhhhh
Q psy3567 210 -ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMK--AFQQLDGYNNYMDSELQ 271 (277)
Q Consensus 210 -l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~l~~~~~~~~~~~~ 271 (277)
+..+++|++|++++|.++ +..+..+..+++|++|++++|++.+. .++.++.+.+.+.+.+|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBB
T ss_pred HhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCccc
Confidence 688999999999999998 45556678899999999999999864 35667777777766655
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=6.6e-22 Score=168.30 Aligned_cols=197 Identities=19% Similarity=0.227 Sum_probs=166.6
Q ss_pred HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCc
Q psy3567 47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE 126 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~ 126 (277)
..+..+++|++|++++|.++.+++..+..+++|++|++++|++...++ +..+++|++|++++|.+..++ ..++|+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 445667799999999999998886555555999999999999986665 899999999999999998765 348999
Q ss_pred eeecccccccccchhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccC-chhc-cc-eeeEEEccCCc
Q psy3567 127 NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIP-DGIG-KM-KVIEMNLNKNQ 202 (277)
Q Consensus 127 ~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~-~~~~-~~-~l~~L~l~~n~ 202 (277)
+|++++|.+..++.. .+++|++|++++|.+..+++ .+..+++|++|++++|.++.++ ..+. .+ .+++|++++|+
T Consensus 103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 999999999877533 36889999999999998754 6677899999999999999654 3343 33 59999999999
Q ss_pred cCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567 203 ICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 203 l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
++.++... .+++|++|++++|.++ .+|..+..+++|++|++++|.++.
T Consensus 181 l~~~~~~~-~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 181 IYDVKGQV-VFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp CCEEECCC-CCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCE
T ss_pred Cccccccc-ccccCCEEECCCCcCC--cchhhhcccCcccEEECcCCcccc
Confidence 99886543 5899999999999997 677778999999999999998874
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=172.79 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=146.2
Q ss_pred cCccCEEEeecCCCCc--CCh--hHHHhhccccEEEccCCCCC-cCCccc--cccCCCcEEeccCCcCccc-C----ccc
Q psy3567 52 AKKTGVINLSHQGFKE--FPD--EMNELKAVLRTLDISQNKIS-KFPLDL--ASYQLLKSLTFDQNKIESL-P----KDI 119 (277)
Q Consensus 52 ~~~L~~L~l~~~~i~~--~~~--~~~~~~~~L~~L~l~~~~i~-~~~~~~--~~l~~L~~L~l~~~~i~~~-~----~~~ 119 (277)
...++.+.+.++.+.. +.. ..... ++|++|++++|.+. ..|..+ ..+++|++|++++|.+... + ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3456788888887761 111 11222 66999999999887 445555 7888999999999988742 2 244
Q ss_pred cCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCcc---Cc--cccCCCCCCCEEEccCCCCcccCch----hc
Q psy3567 120 GTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNK---FP--TVLFNLQHLDVLDLSFNRIESIPDG----IG 189 (277)
Q Consensus 120 ~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~---~~--~~l~~~~~L~~L~l~~n~l~~l~~~----~~ 189 (277)
..+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++ ..+..+++|++|++++|.++.++.. +.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 56888999999999988765 568888999999999998753 32 2235788899999999988765543 23
Q ss_pred cc-eeeEEEccCCccCcC-CcCccCC---CCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567 190 KM-KVIEMNLNKNQICHI-SPDISEC---VRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 190 ~~-~l~~L~l~~n~l~~l-~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
.+ .+++|++++|+++.+ |..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCC
Confidence 33 488999999999876 6666665 68999999999887 6777664 789999999998886
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.2e-22 Score=161.70 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=159.9
Q ss_pred CCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCc-CcccCc-cccCcccCceeeccc-ccccccc
Q psy3567 64 GFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNK-IESLPK-DIGTLEKLENVSGNC-NLIKELP 139 (277)
Q Consensus 64 ~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~-i~~~~~-~~~~l~~L~~L~l~~-n~~~~l~ 139 (277)
.++.+|. .++++++|++++|+++.+++ .|.++++|++|++++|. ++.++. .+..+++|++|++++ |.+..++
T Consensus 22 ~l~~ip~----~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC----CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC----CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3888887 33689999999999998877 68999999999999997 988865 789999999999998 9999887
Q ss_pred h-hhhcCCCCCEEEccCCCCccCccccCCCCCCC---EEEccCC-CCcccCch-hccc-eee-EEEccCCccCcCCcCcc
Q psy3567 140 L-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD---VLDLSFN-RIESIPDG-IGKM-KVI-EMNLNKNQICHISPDIS 211 (277)
Q Consensus 140 ~-~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~---~L~l~~n-~l~~l~~~-~~~~-~l~-~L~l~~n~l~~l~~~l~ 211 (277)
. .|..+++|++|++++|.+..+|. +..+++|+ +|++++| .++.++.. +..+ .++ ++++++|+++.+|....
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 4 68899999999999999999987 77888888 9999999 99988765 5555 499 99999999999998755
Q ss_pred CCCCCCEEEcCCCc-cccCccCccccCC-CCccEEEcCCCeeeecc
Q psy3567 212 ECVRLKILRLEENC-LAINAIPTCILTS-SNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 212 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~ 255 (277)
..++|+.|++++|+ ++ ..-+..+..+ ++|++|++++|.++.-.
T Consensus 177 ~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred CCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCC
Confidence 55899999999995 87 3334568888 99999999999987543
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=186.41 Aligned_cols=205 Identities=22% Similarity=0.258 Sum_probs=115.7
Q ss_pred HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC-CccccccCCCcEEeccCCcCcccCc-cccCccc
Q psy3567 47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTFDQNKIESLPK-DIGTLEK 124 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~ 124 (277)
..|..+++|+.|++++|+++.+++..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..++. .+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 4456667777777777777765444334346777777777777655 4457777777777777777766543 5666677
Q ss_pred Cceeecccccccccch-----------------------------------------hhhcCCCCCEEEccCCCCccCcc
Q psy3567 125 LENVSGNCNLIKELPL-----------------------------------------SFSKLHNLKHLSLSQNQLNKFPT 163 (277)
Q Consensus 125 L~~L~l~~n~~~~l~~-----------------------------------------~~~~l~~L~~L~l~~n~l~~~~~ 163 (277)
|++|++++|.+..++. .+..+++|+.|++++|.+..++.
T Consensus 364 L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 7777776666553321 12234445555555555443321
Q ss_pred --ccCCCCCCCEEEccCCCCcccC------chhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCc
Q psy3567 164 --VLFNLQHLDVLDLSFNRIESIP------DGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPT 233 (277)
Q Consensus 164 --~l~~~~~L~~L~l~~n~l~~l~------~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~ 233 (277)
.+..+++|++|++++|.++..+ ..+..+ .+++|++++|+++.++.. +..+++|+.|++++|.++ .+|.
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~ 521 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSH 521 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS--SCCC
T ss_pred ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC--ccCh
Confidence 1223444555555555443211 112223 366667777776666554 566777777777777766 2332
Q ss_pred cccCCCCccEEEcCCCeeeec
Q psy3567 234 CILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 234 ~~~~~~~L~~l~l~~n~~~~~ 254 (277)
.... ++|+.|++++|.+++.
T Consensus 522 ~~~~-~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 522 NDLP-ANLEILDISRNQLLAP 541 (844)
T ss_dssp CCCC-SCCCEEEEEEECCCCC
T ss_pred hhhh-ccccEEECCCCcCCCC
Confidence 2211 5566666666655543
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.8e-21 Score=174.89 Aligned_cols=201 Identities=19% Similarity=0.216 Sum_probs=167.9
Q ss_pred cchhHhhhcc----CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCcc
Q psy3567 43 SATKRHFETA----KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118 (277)
Q Consensus 43 ~~~~~~l~~~----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 118 (277)
..++..+..+ ++|++|++++|.++.+++..+..+++|++|++++|.+...++ +..+++|++|++++|.+..++.
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-
Confidence 3444444444 489999999999998876444445999999999999986655 8999999999999999987753
Q ss_pred ccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcc-cCchhc-cc-eee
Q psy3567 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIES-IPDGIG-KM-KVI 194 (277)
Q Consensus 119 ~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~-l~~~~~-~~-~l~ 194 (277)
.++|++|++++|.+..++.. .+++|+.|++++|.+..+ |..++.+++|++|++++|.++. .|..+. .+ .++
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred ---CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 38999999999999977643 468999999999999976 5577789999999999999996 455554 34 599
Q ss_pred EEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeeee
Q psy3567 195 EMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 195 ~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
+|++++|.++.++... .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 173 ~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp EEECTTSCCCEEECCC-CCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCE
T ss_pred EEecCCCccccccccc-cCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCcCcc
Confidence 9999999999886543 5899999999999998 577778999999999999999885
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.4e-23 Score=179.61 Aligned_cols=231 Identities=19% Similarity=0.237 Sum_probs=181.1
Q ss_pred CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCC----cCChhHH------HhhccccEEE
Q psy3567 14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFK----EFPDEMN------ELKAVLRTLD 83 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~----~~~~~~~------~~~~~L~~L~ 83 (277)
.+++++|++++|.+++..+..+ ...+..+++|++|++++|.+. .+|..+. ..+++|++|+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l----------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWL----------SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHH----------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred CCCccEEECCCCCCCHHHHHHH----------HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 4678889999888775533322 245778999999999998665 3454442 2238999999
Q ss_pred ccCCCCCc-----CCccccccCCCcEEeccCCcCcc-----cCccccCc---------ccCceeeccccccc--ccc---
Q psy3567 84 ISQNKISK-----FPLDLASYQLLKSLTFDQNKIES-----LPKDIGTL---------EKLENVSGNCNLIK--ELP--- 139 (277)
Q Consensus 84 l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l---------~~L~~L~l~~n~~~--~l~--- 139 (277)
+++|.+.. +|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999985 66678899999999999999873 23334444 89999999999986 344
Q ss_pred hhhhcCCCCCEEEccCCCCc------cCccccCCCCCCCEEEccCCCCc-----ccCchhccc-eeeEEEccCCccCc--
Q psy3567 140 LSFSKLHNLKHLSLSQNQLN------KFPTVLFNLQHLDVLDLSFNRIE-----SIPDGIGKM-KVIEMNLNKNQICH-- 205 (277)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~l~------~~~~~l~~~~~L~~L~l~~n~l~-----~l~~~~~~~-~l~~L~l~~n~l~~-- 205 (277)
..+..+++|++|++++|.+. -++..+..+++|++|++++|.++ .+|..+... .+++|++++|+++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 46778899999999999988 23337778899999999999994 567666665 49999999999984
Q ss_pred ---CCcCc--cCCCCCCEEEcCCCccccC----ccCccc-cCCCCccEEEcCCCeeeecc
Q psy3567 206 ---ISPDI--SECVRLKILRLEENCLAIN----AIPTCI-LTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 206 ---l~~~l--~~~~~L~~L~l~~n~~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~ 255 (277)
++..+ +.+++|++|++++|.++ . .+|..+ .++++|++|++++|.+++..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~-~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIE-LDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCB-HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCC-HHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 46666 44899999999999998 3 377777 56899999999999998765
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.3e-20 Score=152.59 Aligned_cols=172 Identities=23% Similarity=0.373 Sum_probs=130.4
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccCceeec
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSG 130 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l 130 (277)
...++++++++.++.+|..+. ++++.|++++|++..+++ .+.++++|++|++++|.+..++. .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 456788999998888887543 678899999998887655 58888889999999888887644 5778888888888
Q ss_pred ccccccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcC
Q psy3567 131 NCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHI 206 (277)
Q Consensus 131 ~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l 206 (277)
++|.+..++. .|..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..+ .+++|++++|+++.+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 8888887764 467788888888888888877654 45678888888888887776653 4444 377777777777766
Q ss_pred Cc-CccCCCCCCEEEcCCCccc
Q psy3567 207 SP-DISECVRLKILRLEENCLA 227 (277)
Q Consensus 207 ~~-~l~~~~~L~~L~l~~n~~~ 227 (277)
+. .+..+++|+.|++++|++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 65 3666777777777777776
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=2.3e-20 Score=156.95 Aligned_cols=171 Identities=26% Similarity=0.347 Sum_probs=124.5
Q ss_pred hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCcee
Q psy3567 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV 128 (277)
Q Consensus 49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L 128 (277)
+..+++++.|++++|.+..++. +..+ ++|++|++++|+++.+++ +.++++|++|++++|.+..++. +..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l-~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYL-PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcC-CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 4567777888888888777754 4444 778888888888777666 7777888888888887776543 7777778888
Q ss_pred ecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC
Q psy3567 129 SGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS 207 (277)
Q Consensus 129 ~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~ 207 (277)
++++|.+..++ .+..+++|++|++++|.+..+ ..+..+++|++|++++|.++.++. +..+ .+++|++++|+++.++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh
Confidence 88877777763 567777788888888777776 456677778888887777776655 4444 4777777777777765
Q ss_pred cCccCCCCCCEEEcCCCccc
Q psy3567 208 PDISECVRLKILRLEENCLA 227 (277)
Q Consensus 208 ~~l~~~~~L~~L~l~~n~~~ 227 (277)
. +..+++|+.|++++|+++
T Consensus 195 ~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 195 A-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G-GTTCTTCSEEEEEEEEEE
T ss_pred h-hccCCCCCEEECcCCccc
Confidence 4 667777777777777776
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.2e-20 Score=153.65 Aligned_cols=175 Identities=25% Similarity=0.381 Sum_probs=149.0
Q ss_pred ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccch-hhhcCCCCCEEEcc
Q psy3567 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLS 154 (277)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~ 154 (277)
+..+.++++++.++.+|..+. +.+++|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999888765 689999999999987754 78899999999999999987754 58889999999999
Q ss_pred CCCCccCcc-ccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCc
Q psy3567 155 QNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINA 230 (277)
Q Consensus 155 ~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~ 230 (277)
+|.+..++. .+..+++|++|++++|.++.++... ..+ .+++|++++|+++.++. .+..+++|++|++++|.++ +.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence 999998764 4568899999999999999887654 444 49999999999998887 4888999999999999998 44
Q ss_pred cCccccCCCCccEEEcCCCeeeec
Q psy3567 231 IPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 231 ~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
.+..+..+++|++|++++|++++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 455788899999999999999875
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=4.2e-20 Score=170.49 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=83.9
Q ss_pred CCceeEecCCCCcCCCCCC------ceeeeccCCcchh----HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEc
Q psy3567 15 PSKLTLLLPGKKNRGLIEG------TIFVLKMGNSATK----RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDI 84 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~------~~~~l~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 84 (277)
+++++|+|++|.+++..+. .+.++.+.++.+. .+|.++++|++|+|++|+++.+|+..+..+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4678888888888765543 3456666666543 46788888888888888888888766555578888888
Q ss_pred cCCCCCcCCc-cccccCCCcEEeccCCcCcc--cCccccCcccCceeeccccc
Q psy3567 85 SQNKISKFPL-DLASYQLLKSLTFDQNKIES--LPKDIGTLEKLENVSGNCNL 134 (277)
Q Consensus 85 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~n~ 134 (277)
++|+++.+++ .|.++++|++|++++|.+.. .|..++.+++|++|++++|.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 8888877665 37777777777777777763 34555566666666555443
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.8e-20 Score=157.49 Aligned_cols=189 Identities=23% Similarity=0.322 Sum_probs=151.1
Q ss_pred EEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccc
Q psy3567 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137 (277)
Q Consensus 58 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~ 137 (277)
+.+....+..+.. ...+ ++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..
T Consensus 29 ~~l~~~~~~~~~~-~~~l-~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 29 DNLKKKSVTDAVT-QNEL-NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHTTCSCTTSEEC-HHHH-HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HHhcCCCcccccc-hhhc-CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 3455566665432 2344 88999999999888775 47888999999999999988766 8888999999999998888
Q ss_pred cchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCC
Q psy3567 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRL 216 (277)
Q Consensus 138 l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L 216 (277)
++. +..+++|++|++++|.+..+ +.+..+++|++|++++|.++.+ ..+..+ ++++|++++|+++.++. +..+++|
T Consensus 105 ~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L 180 (291)
T 1h6t_A 105 LSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL 180 (291)
T ss_dssp GGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred Chh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCcc
Confidence 754 88889999999999988887 4577788999999999998877 345554 48899999999998876 8888999
Q ss_pred CEEEcCCCccccCccCccccCCCCccEEEcCCCeeeecccc
Q psy3567 217 KILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQ 257 (277)
Q Consensus 217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 257 (277)
+.|++++|.++ .++ .+..+++|+.|++++|.++.....
T Consensus 181 ~~L~L~~N~i~--~l~-~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 181 QNLYLSKNHIS--DLR-ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp CEEECCSSCCC--BCG-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred CEEECCCCcCC--CCh-hhccCCCCCEEECcCCcccCCccc
Confidence 99999999887 454 478889999999999988765443
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.8e-20 Score=172.47 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=168.5
Q ss_pred CCCceeEecCCCCcCCC--CCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc
Q psy3567 14 SPSKLTLLLPGKKNRGL--IEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK 91 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~ 91 (277)
.+++++|++++|.+++. .++.+..+.+.++.+...-..+++|+.|++++|+++.+|..+ ++|++|++++|+++.
T Consensus 80 l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l----~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP----PGLQELSVSDNQLAS 155 (622)
T ss_dssp CTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSC
T ss_pred CCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCCC----CCCCEEECcCCcCCC
Confidence 46899999999998753 235667777777766543336788999999999999888642 789999999998887
Q ss_pred CCcccc---cc--------------CCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEcc
Q psy3567 92 FPLDLA---SY--------------QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLS 154 (277)
Q Consensus 92 ~~~~~~---~l--------------~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~ 154 (277)
+|..+. .+ ++|+.|++++|.+..+|.. .++|+.|++++|.+..+|.. +++|+.|+++
T Consensus 156 l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls 229 (622)
T 3g06_A 156 LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVS 229 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECC
T ss_pred cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEcc
Confidence 655432 23 7788899999988887753 47899999999999988753 4789999999
Q ss_pred CCCCccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCcc
Q psy3567 155 QNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTC 234 (277)
Q Consensus 155 ~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 234 (277)
+|.++.+| ..+++|+.|++++|.++.+|. ....+++|++++|+++.+|..+..+++|+.|++++|+++ +..|..
T Consensus 230 ~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~-~~~~~~ 303 (622)
T 3g06_A 230 GNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQA 303 (622)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC-HHHHHH
T ss_pred CCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC-CcCHHH
Confidence 99999988 456899999999999999887 233599999999999999999999999999999999998 555555
Q ss_pred ccC
Q psy3567 235 ILT 237 (277)
Q Consensus 235 ~~~ 237 (277)
+..
T Consensus 304 l~~ 306 (622)
T 3g06_A 304 LRE 306 (622)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=5.1e-21 Score=165.75 Aligned_cols=230 Identities=17% Similarity=0.157 Sum_probs=174.6
Q ss_pred CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccC-ccCEEEeecCCCCcCCh-hHHHh----hccccEEEccCCC
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAK-KTGVINLSHQGFKEFPD-EMNEL----KAVLRTLDISQNK 88 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~-~~~~~----~~~L~~L~l~~~~ 88 (277)
.++++|++++|.+++..+..+ ...|..++ +|++|++++|+++.... .+... +++|++|++++|+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l----------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVEL----------IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHH----------HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCCCCChHHHHHH----------HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 458888888888776644322 25678888 89999999999996643 33332 2789999999999
Q ss_pred CCcCCcc-----cccc-CCCcEEeccCCcCcccCc-c----ccC-cccCceeecccccccc-----cchhhhcCC-CCCE
Q psy3567 89 ISKFPLD-----LASY-QLLKSLTFDQNKIESLPK-D----IGT-LEKLENVSGNCNLIKE-----LPLSFSKLH-NLKH 150 (277)
Q Consensus 89 i~~~~~~-----~~~l-~~L~~L~l~~~~i~~~~~-~----~~~-l~~L~~L~l~~n~~~~-----l~~~~~~l~-~L~~ 150 (277)
++..+.. +..+ ++|++|++++|.+...+. . +.. ..+|++|++++|.+.. ++..+...+ +|++
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 9865443 4444 899999999999986543 2 334 3689999999999883 445566666 9999
Q ss_pred EEccCCCCccCcc-----ccCCC-CCCCEEEccCCCCcc-----cCchhcc-c-eeeEEEccCCccCcCCc-----CccC
Q psy3567 151 LSLSQNQLNKFPT-----VLFNL-QHLDVLDLSFNRIES-----IPDGIGK-M-KVIEMNLNKNQICHISP-----DISE 212 (277)
Q Consensus 151 L~l~~n~l~~~~~-----~l~~~-~~L~~L~l~~n~l~~-----l~~~~~~-~-~l~~L~l~~n~l~~l~~-----~l~~ 212 (277)
|++++|.++.... .+..+ ++|++|++++|.++. ++..+.. . .+++|++++|.++..+. .+..
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 9999999985532 34455 599999999999985 5555544 3 59999999999986543 4577
Q ss_pred CCCCCEEEcCCCccc------cCccCccccCCCCccEEEcCCCeeeec
Q psy3567 213 CVRLKILRLEENCLA------INAIPTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 213 ~~~L~~L~l~~n~~~------~~~~~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
+++|+.|++++|.+. ...++..+..+++|+++++++|.+...
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 899999999999843 113344567788999999999999876
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=6.7e-22 Score=176.25 Aligned_cols=208 Identities=15% Similarity=0.165 Sum_probs=132.9
Q ss_pred HhhhccCccCEEEeecCCCCcCC-hhHHH----hhccccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCccc-
Q psy3567 47 RHFETAKKTGVINLSHQGFKEFP-DEMNE----LKAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIESL- 115 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~~~~-~~~~~----~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~~- 115 (277)
..+..+++|++|++++|.+.... ..+.. ..++|++|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 34455666677777766665221 11221 12367777777776664 344566677777777777776532
Q ss_pred ----Cc-cccCcccCceeecccccccc-----cchhhhcCCCCCEEEccCCCCcc-----CccccC-CCCCCCEEEccCC
Q psy3567 116 ----PK-DIGTLEKLENVSGNCNLIKE-----LPLSFSKLHNLKHLSLSQNQLNK-----FPTVLF-NLQHLDVLDLSFN 179 (277)
Q Consensus 116 ----~~-~~~~l~~L~~L~l~~n~~~~-----l~~~~~~l~~L~~L~l~~n~l~~-----~~~~l~-~~~~L~~L~l~~n 179 (277)
.. .+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.. +...+. ..++|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 12 22346777788877777764 55666677788888888877752 222222 2357888888888
Q ss_pred CCcc-----cCchhccc-eeeEEEccCCccCcCC-c----CccC-CCCCCEEEcCCCcccc---CccCccccCCCCccEE
Q psy3567 180 RIES-----IPDGIGKM-KVIEMNLNKNQICHIS-P----DISE-CVRLKILRLEENCLAI---NAIPTCILTSSNVCTL 244 (277)
Q Consensus 180 ~l~~-----l~~~~~~~-~l~~L~l~~n~l~~l~-~----~l~~-~~~L~~L~l~~n~~~~---~~~~~~~~~~~~L~~l 244 (277)
.++. ++..+... .+++|++++|+++... . .+.. .++|++|++++|.++. ..+|..+..+++|++|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 7763 34444443 4888888888887432 2 2222 6788899999888872 1567777788899999
Q ss_pred EcCCCeeeec
Q psy3567 245 NVEGNLFEMK 254 (277)
Q Consensus 245 ~l~~n~~~~~ 254 (277)
++++|.++..
T Consensus 404 ~l~~N~i~~~ 413 (461)
T 1z7x_W 404 DLSNNCLGDA 413 (461)
T ss_dssp ECCSSSCCHH
T ss_pred ECCCCCCCHH
Confidence 9999988765
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=4.7e-20 Score=169.33 Aligned_cols=171 Identities=26% Similarity=0.345 Sum_probs=131.3
Q ss_pred hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCcee
Q psy3567 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV 128 (277)
Q Consensus 49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L 128 (277)
+..++.|+.|++++|.+..+++ +..+ ++|+.|++++|++..+++ +..+++|++|++++|.+..++ .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~-l~~l-~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG-IQYL-PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT-GGGC-TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChH-HccC-CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 4667778888888888887764 4444 788888888888887766 778888888888888887765 67778888888
Q ss_pred ecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCC
Q psy3567 129 SGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHIS 207 (277)
Q Consensus 129 ~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~ 207 (277)
++++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.++. +..+ .|++|++++|+++.++
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 88888887764 577788888888888888777 566777888888888888876655 4444 4788888888888774
Q ss_pred cCccCCCCCCEEEcCCCccc
Q psy3567 208 PDISECVRLKILRLEENCLA 227 (277)
Q Consensus 208 ~~l~~~~~L~~L~l~~n~~~ 227 (277)
.+..+++|+.|+|++|++.
T Consensus 192 -~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEE
T ss_pred -HHccCCCCCEEEccCCcCc
Confidence 4677788888888888776
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=3.8e-20 Score=153.31 Aligned_cols=168 Identities=24% Similarity=0.330 Sum_probs=138.4
Q ss_pred ccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeec
Q psy3567 51 TAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSG 130 (277)
Q Consensus 51 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l 130 (277)
.+.++..++++++.++.++ .+..+ ++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l-~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKEL-SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHH-TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhc-CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3555667788888888877 35555 88999999999998887 68889999999999999988876 888999999999
Q ss_pred ccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcC
Q psy3567 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPD 209 (277)
Q Consensus 131 ~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~ 209 (277)
++|.+..++.... ++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+ ++++|++++|+++.+ ..
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH
Confidence 9999888765333 88999999999988875 5778889999999999988876 44444 488899999998887 66
Q ss_pred ccCCCCCCEEEcCCCccc
Q psy3567 210 ISECVRLKILRLEENCLA 227 (277)
Q Consensus 210 l~~~~~L~~L~l~~n~~~ 227 (277)
+..+++|+.|++++|+++
T Consensus 168 l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp STTCCCCCEEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCccc
Confidence 788888999999998887
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=5.7e-21 Score=163.48 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=136.1
Q ss_pred ceeEecCCCCcCCCCCCceeeeccCCcchhHhhhcc--CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCc--C
Q psy3567 17 KLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETA--KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK--F 92 (277)
Q Consensus 17 l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~--~ 92 (277)
.++++++++.+.. ..+..+ +.++.++++++.+...++.++.+ ++|++|++++|.+.. +
T Consensus 49 ~~~l~l~~~~~~~-----------------~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 49 WQTLDLTGKNLHP-----------------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp SSEEECTTCBCCH-----------------HHHHHHHHTTCSEEECTTCEECSCCCSCCCC-BCCCEEECTTCEECHHHH
T ss_pred heeeccccccCCH-----------------HHHHhhhhccceEEEcCCccccccchhhccC-CCCCEEEccCCCcCHHHH
Confidence 5567777665541 234444 66777777777776555555554 677777777777652 5
Q ss_pred CccccccCCCcEEeccCCcCc-ccCccccCcccCceeecccc-ccc--ccchhhhcCCCCCEEEccCC-CCcc--Ccccc
Q psy3567 93 PLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVSGNCN-LIK--ELPLSFSKLHNLKHLSLSQN-QLNK--FPTVL 165 (277)
Q Consensus 93 ~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~n-~~~--~l~~~~~~l~~L~~L~l~~n-~l~~--~~~~l 165 (277)
+..+..+++|++|++++|.+. ..+..++.+++|++|++++| .+. .++..+..+++|++|++++| .++. ++..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 555667777777777777766 34556666777777777776 454 24555666777777777777 6663 45555
Q ss_pred CCCC-CCCEEEccCC--CCc--ccCchhccc-eeeEEEccCCc-cC-cCCcCccCCCCCCEEEcCCCc-cccCccCcccc
Q psy3567 166 FNLQ-HLDVLDLSFN--RIE--SIPDGIGKM-KVIEMNLNKNQ-IC-HISPDISECVRLKILRLEENC-LAINAIPTCIL 236 (277)
Q Consensus 166 ~~~~-~L~~L~l~~n--~l~--~l~~~~~~~-~l~~L~l~~n~-l~-~l~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~ 236 (277)
..++ +|++|++++| .++ .++..+..+ ++++|++++|. ++ ..+..+..+++|++|++++|. ++. .....+.
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~ 269 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELG 269 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGG
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHh
Confidence 5666 7777777777 343 345444444 37777777777 44 445556677777777777773 331 1113456
Q ss_pred CCCCccEEEcCCCeeee
Q psy3567 237 TSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 237 ~~~~L~~l~l~~n~~~~ 253 (277)
++++|++|++++| ++.
T Consensus 270 ~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GCTTCCEEECTTS-SCT
T ss_pred cCCCCCEEeccCc-cCH
Confidence 6777777777777 554
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.6e-19 Score=165.86 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=84.1
Q ss_pred ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCC
Q psy3567 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN 156 (277)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n 156 (277)
++|+.|++++|.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|+.|++++|
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC
Confidence 45555555555555443 34455555555555555554443 445555555555555555443 3445555555555555
Q ss_pred CCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccc
Q psy3567 157 QLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCI 235 (277)
Q Consensus 157 ~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 235 (277)
.+..++ .+..+++|+.|++++|.++.+ ..+..+ .|+.|++++|+++.++. +..+++|+.|+|++|.+. .+ ..+
T Consensus 120 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~--~l-~~l 193 (605)
T 1m9s_A 120 GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS--DL-RAL 193 (605)
T ss_dssp CCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--BC-GGG
T ss_pred CCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC--CC-hHH
Confidence 555442 344455555555555555544 223332 25555555555554444 445555555555555554 22 234
Q ss_pred cCCCCccEEEcCCCeeee
Q psy3567 236 LTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 236 ~~~~~L~~l~l~~n~~~~ 253 (277)
..+++|+.|+|++|.++.
T Consensus 194 ~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCTTCSEEECCSEEEEC
T ss_pred ccCCCCCEEEccCCcCcC
Confidence 455555555555555544
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=8.5e-19 Score=161.73 Aligned_cols=245 Identities=17% Similarity=0.186 Sum_probs=191.3
Q ss_pred CCceeEecCCCCcCCCCCCce---eeeccCCcchh--HhhhccCccCEEEeecCCCC---cCChhHHHhhccccEEEccC
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTI---FVLKMGNSATK--RHFETAKKTGVINLSHQGFK---EFPDEMNELKAVLRTLDISQ 86 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~---~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~---~~~~~~~~~~~~L~~L~l~~ 86 (277)
.+++.|++.+|.+.+..+..+ ..+.+..+... .....++.++++++++|.+. ..+...... .+++.+++..
T Consensus 328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~ 406 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSF 406 (635)
T ss_dssp CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCS
T ss_pred hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh-hhhhhhhccc
Confidence 467778888887665544322 23333222221 23456789999999999887 345555555 8899999999
Q ss_pred CCCCcCCccccccCCCcEEeccCCcCccc--CccccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCc-c-C
Q psy3567 87 NKISKFPLDLASYQLLKSLTFDQNKIESL--PKDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLN-K-F 161 (277)
Q Consensus 87 ~~i~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~-~-~ 161 (277)
+.+..++..+..+++|+.+++..+..... ...+..+.+++.++++.|.+..+ +..+..++.++.|++++|... . .
T Consensus 407 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 407 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp CSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC
Confidence 98887788888999999999998876644 34678899999999999999865 456888999999999999755 3 4
Q ss_pred ccccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCC
Q psy3567 162 PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTS 238 (277)
Q Consensus 162 ~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 238 (277)
|..+..+++|++|++++|.++.+ |..+..+ .|++|++++|+++.++.. +..+++|++|++++|.++ +..|..+..+
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l 565 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 565 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC-BCCSSCTTCC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC-CCCHHHHHhh
Confidence 67788899999999999999976 4556666 499999999999998765 889999999999999998 6667788887
Q ss_pred -CCccEEEcCCCeeeec-ccccccc
Q psy3567 239 -SNVCTLNVEGNLFEMK-AFQQLDG 261 (277)
Q Consensus 239 -~~L~~l~l~~n~~~~~-~~~~l~~ 261 (277)
++|++|++++|++++. .+..+..
T Consensus 566 ~~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp CTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred hCcCCEEEeeCCCCcccCCcHHHHH
Confidence 6899999999999974 3444433
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.6e-19 Score=149.56 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=119.9
Q ss_pred hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567 48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN 127 (277)
Q Consensus 48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~ 127 (277)
.+..+++|++|++++|.++.++ .+..+ ++|+.|++++|+++.+++ +..+++|++|++++|++..++.... ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l-~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFF-TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhC-CCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 3677888888888888888877 45555 888888888888887776 8888888888888888887765333 78888
Q ss_pred eecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEEEccCCccCcC
Q psy3567 128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHI 206 (277)
Q Consensus 128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~~n~l~~l 206 (277)
|++++|.+..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+ ..+..+ +++.|++++|.++..
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 888888888775 5778888888888888888775 577788888888888888876 334444 488888888888766
Q ss_pred CcC
Q psy3567 207 SPD 209 (277)
Q Consensus 207 ~~~ 209 (277)
|..
T Consensus 188 ~~~ 190 (263)
T 1xeu_A 188 PVK 190 (263)
T ss_dssp CEE
T ss_pred ccc
Confidence 543
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.2e-19 Score=142.48 Aligned_cols=175 Identities=26% Similarity=0.374 Sum_probs=130.1
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeecccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCN 133 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n 133 (277)
+.++++++.++.+|..+ .+++++|++++|+++.+++. +..+++|++|++++|++..++. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56788888888888644 26788888888888877664 6788888888888888887755 4677888888888888
Q ss_pred cccccchh-hhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC
Q psy3567 134 LIKELPLS-FSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD 209 (277)
Q Consensus 134 ~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~ 209 (277)
.+..++.. +..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..+ ++++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 88877643 67788888888888888877654 56778888888888888776654 3434 4777888777554
Q ss_pred ccCCCCCCEEEcCCCccccCccCccccCCCC
Q psy3567 210 ISECVRLKILRLEENCLAINAIPTCILTSSN 240 (277)
Q Consensus 210 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 240 (277)
+.+++|+.|+++.|.++ +.+|..+..++.
T Consensus 162 -~~~~~l~~L~~~~n~~~-g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHS-GVVRNSAGSVAP 190 (208)
T ss_dssp -CCTTTTHHHHHHHHHCT-TTBBCTTSSBCT
T ss_pred -cCCCCHHHHHHHHHhCC-ceeeccCccccC
Confidence 34567777888888777 677776665543
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=1.9e-20 Score=163.40 Aligned_cols=209 Identities=20% Similarity=0.206 Sum_probs=167.5
Q ss_pred CCCCCCceeEecCCCC---cCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCc-----CChhHHHhhccccEE
Q psy3567 11 DPSSPSKLTLLLPGKK---NRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKE-----FPDEMNELKAVLRTL 82 (277)
Q Consensus 11 ~~~~~~l~~l~l~~~~---~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~~L~~L 82 (277)
+...+++++|++++|. +.+.+|..+..+ ...+..+++|++|++++|.+.. +|..+..+ ++|++|
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l-------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L 127 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLL-------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHL 127 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-------HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHC-TTCCEE
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHH-------HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhC-CCCCEE
Confidence 4456789999999964 445555554322 3667899999999999999986 66666666 999999
Q ss_pred EccCCCCCc-----CCcccccc---------CCCcEEeccCCcCc--ccC---ccccCcccCceeecccccccc-----c
Q psy3567 83 DISQNKISK-----FPLDLASY---------QLLKSLTFDQNKIE--SLP---KDIGTLEKLENVSGNCNLIKE-----L 138 (277)
Q Consensus 83 ~l~~~~i~~-----~~~~~~~l---------~~L~~L~l~~~~i~--~~~---~~~~~l~~L~~L~l~~n~~~~-----l 138 (277)
++++|.++. ++..+..+ ++|++|++++|++. .++ ..+..+++|++|++++|.+.. +
T Consensus 128 ~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence 999999873 23334444 89999999999997 334 467788999999999999872 3
Q ss_pred -chhhhcCCCCCEEEccCCCCc-----cCccccCCCCCCCEEEccCCCCcc-----cCchhcc--c-eeeEEEccCCccC
Q psy3567 139 -PLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLDLSFNRIES-----IPDGIGK--M-KVIEMNLNKNQIC 204 (277)
Q Consensus 139 -~~~~~~l~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~--~-~l~~L~l~~n~l~ 204 (277)
+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. ++..+.. . ++++|++++|.++
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 337888999999999999994 567788889999999999999983 4555522 4 5999999999999
Q ss_pred c-----CCcCc-cCCCCCCEEEcCCCccc
Q psy3567 205 H-----ISPDI-SECVRLKILRLEENCLA 227 (277)
Q Consensus 205 ~-----l~~~l-~~~~~L~~L~l~~n~~~ 227 (277)
. +|..+ ..+++|++|++++|+++
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 7 88876 66899999999999998
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=7.4e-20 Score=156.53 Aligned_cols=225 Identities=14% Similarity=0.158 Sum_probs=169.7
Q ss_pred CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCc--CChhHHHhhccccEEEccCCCCC-c
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKE--FPDEMNELKAVLRTLDISQNKIS-K 91 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~i~-~ 91 (277)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.. ++..+..+ ++|++|++++|.++ .
T Consensus 70 ~~l~~L~l~~n~l~~~~~~---------------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~ 133 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE---------------HFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDP 133 (336)
T ss_dssp TTCSEEECTTCEECSCCCS---------------CCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHH
T ss_pred ccceEEEcCCccccccchh---------------hccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCcCcccCHH
Confidence 5788999999998877554 2357889999999998873 55544444 89999999999887 4
Q ss_pred CCccccccCCCcEEeccCC-cCcc--cCccccCcccCceeecccc-cccc--cchhhhcCC-CCCEEEccCCC--Cc--c
Q psy3567 92 FPLDLASYQLLKSLTFDQN-KIES--LPKDIGTLEKLENVSGNCN-LIKE--LPLSFSKLH-NLKHLSLSQNQ--LN--K 160 (277)
Q Consensus 92 ~~~~~~~l~~L~~L~l~~~-~i~~--~~~~~~~l~~L~~L~l~~n-~~~~--l~~~~~~l~-~L~~L~l~~n~--l~--~ 160 (277)
.+..+.++++|++|++++| .++. ++..+..+++|++|++++| .+.. ++..+..++ +|++|++++|. ++ .
T Consensus 134 ~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 5666888999999999999 6773 5666788999999999999 7774 566788899 99999999994 43 4
Q ss_pred CccccCCCCCCCEEEccCCC-Cc-ccCchhccc-eeeEEEccCCc-cCc-CCcCccCCCCCCEEEcCCCccccCccCccc
Q psy3567 161 FPTVLFNLQHLDVLDLSFNR-IE-SIPDGIGKM-KVIEMNLNKNQ-ICH-ISPDISECVRLKILRLEENCLAINAIPTCI 235 (277)
Q Consensus 161 ~~~~l~~~~~L~~L~l~~n~-l~-~l~~~~~~~-~l~~L~l~~n~-l~~-l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 235 (277)
++..+..+++|++|++++|. ++ ..+..+..+ ++++|++++|. ++. ....+..+++|+.|++++| ++...+. .+
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~-~l 291 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ-LL 291 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH-HH
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH-HH
Confidence 56666778999999999998 66 455566665 49999999995 331 1124778999999999998 6522222 22
Q ss_pred cCCCCccEEEcCCCeeeecccccc
Q psy3567 236 LTSSNVCTLNVEGNLFEMKAFQQL 259 (277)
Q Consensus 236 ~~~~~L~~l~l~~n~~~~~~~~~l 259 (277)
. .++..|++++|.+++.....+
T Consensus 292 ~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 292 K--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp H--HHSTTSEESCCCSCCTTCSSC
T ss_pred H--hhCcceEEecccCccccCCcc
Confidence 1 235566689999887665544
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=5.8e-20 Score=159.11 Aligned_cols=218 Identities=16% Similarity=0.166 Sum_probs=162.5
Q ss_pred EecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCCh----hHHHhhc-cccEEEccCCCCCcCC-
Q psy3567 20 LLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPD----EMNELKA-VLRTLDISQNKISKFP- 93 (277)
Q Consensus 20 l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~l~~~~i~~~~- 93 (277)
.+++.++++|.+|. .+...++|++|++++|.++..+. ..+...+ +|++|++++|+++...
T Consensus 3 ~~ls~n~~~~~~~~--------------~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 68 (362)
T 3goz_A 3 YKLTLHPGSNPVEE--------------FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS 68 (362)
T ss_dssp EECCCCTTCCHHHH--------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH
T ss_pred cccccccchHHHHH--------------HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH
Confidence 45666666655332 34555669999999999998774 3333335 8999999999998653
Q ss_pred cccccc-----CCCcEEeccCCcCcccCc-c----ccCc-ccCceeecccccccccch-h----hhcC-CCCCEEEccCC
Q psy3567 94 LDLASY-----QLLKSLTFDQNKIESLPK-D----IGTL-EKLENVSGNCNLIKELPL-S----FSKL-HNLKHLSLSQN 156 (277)
Q Consensus 94 ~~~~~l-----~~L~~L~l~~~~i~~~~~-~----~~~l-~~L~~L~l~~n~~~~l~~-~----~~~l-~~L~~L~l~~n 156 (277)
..+..+ ++|++|++++|.++..+. . +..+ ++|++|++++|.+...+. . +..+ ++|++|++++|
T Consensus 69 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 69 DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 346554 999999999999986533 2 4455 899999999999986543 2 3443 59999999999
Q ss_pred CCc-----cCccccCCCC-CCCEEEccCCCCcccCc-hh----cc--ceeeEEEccCCccCc-----CCcCccC-CCCCC
Q psy3567 157 QLN-----KFPTVLFNLQ-HLDVLDLSFNRIESIPD-GI----GK--MKVIEMNLNKNQICH-----ISPDISE-CVRLK 217 (277)
Q Consensus 157 ~l~-----~~~~~l~~~~-~L~~L~l~~n~l~~l~~-~~----~~--~~l~~L~l~~n~l~~-----l~~~l~~-~~~L~ 217 (277)
.++ .++..+...+ +|++|++++|.++.... .+ .. ..+++|++++|+++. ++..+.. .++|+
T Consensus 149 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 149 DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 988 3344555555 99999999999985442 22 22 259999999999996 6666666 46999
Q ss_pred EEEcCCCccccCc---cCccccCCCCccEEEcCCCee
Q psy3567 218 ILRLEENCLAINA---IPTCILTSSNVCTLNVEGNLF 251 (277)
Q Consensus 218 ~L~l~~n~~~~~~---~~~~~~~~~~L~~l~l~~n~~ 251 (277)
+|++++|.++... +...+..+++|+.|++++|.+
T Consensus 229 ~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 9999999998321 223456778999999999983
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=2.4e-20 Score=166.21 Aligned_cols=238 Identities=16% Similarity=0.088 Sum_probs=114.9
Q ss_pred CCceeEecCCCCcCCCCC-------C----ceeeeccCCcch--------hHhhhccCccCEEEeecCCCCcC-ChhHHH
Q psy3567 15 PSKLTLLLPGKKNRGLIE-------G----TIFVLKMGNSAT--------KRHFETAKKTGVINLSHQGFKEF-PDEMNE 74 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~-------~----~~~~l~~~~~~~--------~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~ 74 (277)
+++++|++++|.+....+ . .+..+.+.++.+ +..+..+++|++|++++|.++.. +..+..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 566666776666644211 1 355555555432 34556667777777777766522 122222
Q ss_pred h----hccccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCccc-Ccccc-----CcccCceeecccccccc--
Q psy3567 75 L----KAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIESL-PKDIG-----TLEKLENVSGNCNLIKE-- 137 (277)
Q Consensus 75 ~----~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~-----~l~~L~~L~l~~n~~~~-- 137 (277)
. .++|++|++++|+++. ++..+..+++|++|++++|.+... +..+. ..++|++|++++|.+..
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 1 1346666666666553 233344455666666666655421 11111 13345555555554442
Q ss_pred ---cchhhhcCCCCCE-----------------------------EEccCCCCcc-----CccccCCCCCCCEEEccCCC
Q psy3567 138 ---LPLSFSKLHNLKH-----------------------------LSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNR 180 (277)
Q Consensus 138 ---l~~~~~~l~~L~~-----------------------------L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~ 180 (277)
++..+..+++|++ |++++|.++. ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 2333444444444 4444444442 33333344555555555555
Q ss_pred Ccc-----cCchhcc--ceeeEEEccCCccCc-----CCcCccCCCCCCEEEcCCCccccCccCccccC-----CCCccE
Q psy3567 181 IES-----IPDGIGK--MKVIEMNLNKNQICH-----ISPDISECVRLKILRLEENCLAINAIPTCILT-----SSNVCT 243 (277)
Q Consensus 181 l~~-----l~~~~~~--~~l~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~~L~~ 243 (277)
++. +...+.. .++++|++++|.++. ++..+..+++|++|++++|.++. ..+..+.. .++|++
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEE
Confidence 441 1111110 135555555555552 33444555666666666666652 21222221 456666
Q ss_pred EEcCCCeeee
Q psy3567 244 LNVEGNLFEM 253 (277)
Q Consensus 244 l~l~~n~~~~ 253 (277)
|++++|.++.
T Consensus 375 L~L~~n~i~~ 384 (461)
T 1z7x_W 375 LWLADCDVSD 384 (461)
T ss_dssp EECTTSCCCH
T ss_pred EECCCCCCCh
Confidence 6666666653
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.6e-18 Score=148.05 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=137.8
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCC-cCCc-cccccCCCcE-EeccCCcCccc-CccccCcccCcee
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKIS-KFPL-DLASYQLLKS-LTFDQNKIESL-PKDIGTLEKLENV 128 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~-~~~~l~~L~~-L~l~~~~i~~~-~~~~~~l~~L~~L 128 (277)
+++++|++++|+|+.+|+..+..+++|++|++++|++. .+|. .|.+++++++ +.+..|++..+ +..+..+++|+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 46788888888888888765554588888888888874 4554 4778877665 45566788877 4567888888888
Q ss_pred ecccccccccch-hhhcCCCCCEEEccC-CCCccCccc-cCCC-CCCCEEEccCCCCcccCchhccc-eeeEEEcc-CCc
Q psy3567 129 SGNCNLIKELPL-SFSKLHNLKHLSLSQ-NQLNKFPTV-LFNL-QHLDVLDLSFNRIESIPDGIGKM-KVIEMNLN-KNQ 202 (277)
Q Consensus 129 ~l~~n~~~~l~~-~~~~l~~L~~L~l~~-n~l~~~~~~-l~~~-~~L~~L~l~~n~l~~l~~~~~~~-~l~~L~l~-~n~ 202 (277)
++++|.+..++. .+....++..+++.+ +.+..++.. +..+ ..++.|++++|.++.++...+.. +++++++. +|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 888888887764 355566777787755 456666543 3333 46888889999888887766554 58888886 477
Q ss_pred cCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567 203 ICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249 (277)
Q Consensus 203 l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 249 (277)
++.+|.. +..+++|++|++++|.++ .+|.. .+.+|++|.+.++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIH--SLPSY--GLENLKKLRARST 233 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCC--CCCSS--SCTTCCEEECTTC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcC--ccChh--hhccchHhhhccC
Confidence 8888865 678888999999999887 56653 2345555554443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.9e-18 Score=136.83 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=76.3
Q ss_pred ccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCC
Q psy3567 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN 156 (277)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n 156 (277)
++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+..
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~------------------- 102 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS------------------- 102 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-------------------
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-------------------
Confidence 55666666666555555 4555555555555555443332 34444444455444444442
Q ss_pred CCccCccccCCCCCCCEEEccCCCCcc-cCchhccce-eeEEEccCCc-cCcCCcCccCCCCCCEEEcCCCccccCccCc
Q psy3567 157 QLNKFPTVLFNLQHLDVLDLSFNRIES-IPDGIGKMK-VIEMNLNKNQ-ICHISPDISECVRLKILRLEENCLAINAIPT 233 (277)
Q Consensus 157 ~l~~~~~~l~~~~~L~~L~l~~n~l~~-l~~~~~~~~-l~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~ 233 (277)
..+..+..+++|++|++++|.++. .+..+..++ +++|++++|+ ++.++ .+..+++|++|++++|.++ .++
T Consensus 103 ---~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~--~~~- 175 (197)
T 4ezg_A 103 ---DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH--DYR- 175 (197)
T ss_dssp ---GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC--CCT-
T ss_pred ---ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc--ChH-
Confidence 123344444555555555555442 333333332 5555555554 44544 3556666677777666665 333
Q ss_pred cccCCCCccEEEcCCCeee
Q psy3567 234 CILTSSNVCTLNVEGNLFE 252 (277)
Q Consensus 234 ~~~~~~~L~~l~l~~n~~~ 252 (277)
.+..+++|++|++++|+++
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 5566666777777766654
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=4.3e-18 Score=134.82 Aligned_cols=152 Identities=14% Similarity=0.209 Sum_probs=116.7
Q ss_pred hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcc-cCccccCcccCce
Q psy3567 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLEN 127 (277)
Q Consensus 49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~ 127 (277)
...+++++.|++++|.++.+| .+..+ ++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l-~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYA-HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGC-TTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcC-CCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 367889999999999999988 56666 89999999999877654 68899999999999999986 5778888888888
Q ss_pred eecccccccc-cchhhhcCCCCCEEEccCCC-CccCccccCCCCCCCEEEccCCCCcccCchhccceeeEEEccCCccCc
Q psy3567 128 VSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQ-LNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICH 205 (277)
Q Consensus 128 L~l~~n~~~~-l~~~~~~l~~L~~L~l~~n~-l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~l~~L~l~~n~l~~ 205 (277)
|++++|.+.. .+..+..+++|++|++++|. +..++ .+..+++|++|++++|.++.++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-------------------- 175 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-------------------- 175 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--------------------
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--------------------
Confidence 8888888874 45667778888888888886 66665 4566666666666666555443
Q ss_pred CCcCccCCCCCCEEEcCCCccc
Q psy3567 206 ISPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 206 l~~~l~~~~~L~~L~l~~n~~~ 227 (277)
.+..+++|+.|++++|++.
T Consensus 176 ---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 ---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ---TGGGCSSCCEEEECBC---
T ss_pred ---HhccCCCCCEEEeeCcccC
Confidence 3455677777777777664
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=150.10 Aligned_cols=169 Identities=22% Similarity=0.314 Sum_probs=127.6
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-cc-ccCCCcEEeccCCcCcccC-ccccCcccCceeeccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LA-SYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNC 132 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~-~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~ 132 (277)
+++++++++++.+|..+. +.++.|++++|+++.++.. +. .+++|++|++++|++..++ ..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578889998888887543 5688899999988877654 55 8888999999999888775 4688888888888888
Q ss_pred ccccccch-hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchhc----cc-eeeEEEccCCccCc
Q psy3567 133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGIG----KM-KVIEMNLNKNQICH 205 (277)
Q Consensus 133 n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~~----~~-~l~~L~l~~n~l~~ 205 (277)
|.+..++. .|..+++|++|++++|.+..+ +..+..+++|++|++++|.++.+|.... .+ +++.|++++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88887764 478888888888888888866 4566778888888888888887776642 23 36777777777776
Q ss_pred CCcC-ccCCCC--CCEEEcCCCccc
Q psy3567 206 ISPD-ISECVR--LKILRLEENCLA 227 (277)
Q Consensus 206 l~~~-l~~~~~--L~~L~l~~n~~~ 227 (277)
+|.. +..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 6643 555554 366777777665
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=7.4e-21 Score=173.61 Aligned_cols=175 Identities=22% Similarity=0.277 Sum_probs=87.2
Q ss_pred hccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCC-------------CC-cCCccccccCCCcEEe-ccCCcCcc
Q psy3567 50 ETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNK-------------IS-KFPLDLASYQLLKSLT-FDQNKIES 114 (277)
Q Consensus 50 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-------------i~-~~~~~~~~l~~L~~L~-l~~~~i~~ 114 (277)
..++.|+.|++++|+++.+|+.+..+ ++|+.|++++|. .. ..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677778888888888888877777 778888875543 11 2233344555555555 33333221
Q ss_pred cCc------cccC--cccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCc
Q psy3567 115 LPK------DIGT--LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPD 186 (277)
Q Consensus 115 ~~~------~~~~--l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~ 186 (277)
++. .+.. ...|+.|++++|.+..+|. +..+++|+.|++++|.+..+|..++.+++|++|++++|.++.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 110 0000 1124444444444444443 44444455555554444444444444444555555444444444
Q ss_pred hhccce-eeEEEccCCccCcC--CcCccCCCCCCEEEcCCCccc
Q psy3567 187 GIGKMK-VIEMNLNKNQICHI--SPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 187 ~~~~~~-l~~L~l~~n~l~~l--~~~l~~~~~L~~L~l~~n~~~ 227 (277)
.++.++ |++|++++|+++.+ |..++.+++|+.|++++|+++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 333332 44444444444444 344444444444444444444
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=9.5e-18 Score=144.51 Aligned_cols=199 Identities=17% Similarity=0.146 Sum_probs=147.5
Q ss_pred HhhhccCccCEEEeecCCCC-cCChhHHHhhccccE-EEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCc
Q psy3567 47 RHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRT-LDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTL 122 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~-L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l 122 (277)
.+|.++++|++|++++|++. .+|+..+...+++.. +.+..|++..+++ .|..+++|++|++++|++..++. .+...
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence 35788899999999999875 567655544456554 6667788887754 58889999999999999987754 45566
Q ss_pred ccCceeecc-cccccccch-hhhcCC-CCCEEEccCCCCccCccccCCCCCCCEEEcc-CCCCcccCchh-ccc-eeeEE
Q psy3567 123 EKLENVSGN-CNLIKELPL-SFSKLH-NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS-FNRIESIPDGI-GKM-KVIEM 196 (277)
Q Consensus 123 ~~L~~L~l~-~n~~~~l~~-~~~~l~-~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~-~n~l~~l~~~~-~~~-~l~~L 196 (277)
.++..+++. ++.+..++. .|..+. .++.|++++|.+..++...+...+++++++. +|.++.+|... ..+ .+++|
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 677788864 466777764 455554 6888999999999888877777889999986 46888888654 444 48999
Q ss_pred EccCCccCcCCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249 (277)
Q Consensus 197 ~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 249 (277)
++++|+|+.+|... ..+|+.|.+.++.-. ..+| .+..+++|+.+++.++
T Consensus 208 dLs~N~l~~lp~~~--~~~L~~L~~l~~~~l-~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 208 DISRTRIHSLPSYG--LENLKKLRARSTYNL-KKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTSCCCCCCSSS--CTTCCEEECTTCTTC-CCCC-CTTTCCSCCEEECSCH
T ss_pred hcCCCCcCccChhh--hccchHhhhccCCCc-CcCC-CchhCcChhhCcCCCC
Confidence 99999999998752 356666666555432 4666 4778889999998764
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.8e-17 Score=134.32 Aligned_cols=148 Identities=25% Similarity=0.368 Sum_probs=108.5
Q ss_pred cccEEEccCCCCCcCCccccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccch-hhhcCCCCCEEEccC
Q psy3567 78 VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQ 155 (277)
Q Consensus 78 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~ 155 (277)
.-+.++.+++.+..+|..+. ++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .|..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45667888888887777553 7788888888888766 4567777888888888888877764 367777888888888
Q ss_pred CCCccCccc-cCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 156 NQLNKFPTV-LFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 156 n~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
|.+..++.. +..+++|++|++++|.++.+|..+..++ +++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 877777544 4567778888888777777776665553 77777777777777653 666777777777777776
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.9e-17 Score=133.43 Aligned_cols=147 Identities=23% Similarity=0.399 Sum_probs=102.5
Q ss_pred ccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeeccccccccc-chhhhcCCCCCEEEccCC
Q psy3567 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQN 156 (277)
Q Consensus 79 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n 156 (277)
-+.++++++.++.+|..+. +.+++|++++|++..++. .+..+++|++|++++|.+..+ |..|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3567888888888877654 578888888888887754 677778888888888887765 456777788888888888
Q ss_pred CCccCccc-cCCCCCCCEEEccCCCCcccC-chhccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 157 QLNKFPTV-LFNLQHLDVLDLSFNRIESIP-DGIGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 157 ~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~-~~~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
.+..+|.. +..+++|++|++++|.++.++ ..+..+ ++++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777654 346777777777777777553 334443 366666666666666553 555666666666666664
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.5e-17 Score=132.72 Aligned_cols=147 Identities=24% Similarity=0.315 Sum_probs=91.8
Q ss_pred ccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccC--ccccCcccCceeecccccccccch-hhhcCCCCCEEEccC
Q psy3567 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP--KDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQ 155 (277)
Q Consensus 79 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~ 155 (277)
-+.++++++.++.+|..+. ..+++|++++|.+..++ ..+..+++|++|++++|.+..++. .|..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3577788887777776543 34577777777777663 236677777777777777766654 566677777777777
Q ss_pred CCCccCcc-ccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccc
Q psy3567 156 NQLNKFPT-VLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHI-SPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 156 n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~ 227 (277)
|.+..++. .+..+++|++|++++|.++.+ |..+..+ ++++|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 77766544 355666677777766666654 3333333 255566666655555 334555555566666555554
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=3e-17 Score=133.02 Aligned_cols=147 Identities=26% Similarity=0.381 Sum_probs=108.0
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcC-CccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCN 133 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n 133 (277)
+.++++++++..+|..+. ++|++|++++|+++.+ |..+..+++|++|++++|++..++. .+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 567777777777776442 6788888888887765 4457777888888888888877754 4577788888888888
Q ss_pred cccccchh-hhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCc
Q psy3567 134 LIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICH 205 (277)
Q Consensus 134 ~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~ 205 (277)
.+..++.. |..+++|++|++++|.+..+|..+..+++|++|++++|.++.++.. +..+ ++++|++++|.++.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 87777643 6777888888888888887777777778888888888887776643 3444 47778888887763
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=9.4e-18 Score=145.16 Aligned_cols=173 Identities=24% Similarity=0.329 Sum_probs=146.4
Q ss_pred cccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-ccc-CcccCceeecccccccccch-hhhcCCCCCEEEcc
Q psy3567 78 VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIG-TLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLS 154 (277)
Q Consensus 78 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~-~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~ 154 (277)
.-+.++++++.+..+|..+. ..+++|++++|.++.++. .+. .+++|++|++++|.+..++. .|..+++|++|+++
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 35789999999999998654 468999999999998865 465 89999999999999998874 69999999999999
Q ss_pred CCCCccCcc-ccCCCCCCCEEEccCCCCccc-Cchhccc-eeeEEEccCCccCcCCcCc----cCCCCCCEEEcCCCccc
Q psy3567 155 QNQLNKFPT-VLFNLQHLDVLDLSFNRIESI-PDGIGKM-KVIEMNLNKNQICHISPDI----SECVRLKILRLEENCLA 227 (277)
Q Consensus 155 ~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l-~~~~~~~-~l~~L~l~~n~l~~l~~~l----~~~~~L~~L~l~~n~~~ 227 (277)
+|.+..++. .+..+++|++|++++|.++.+ +..+..+ .|++|++++|+++.+|..+ ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999998865 567899999999999999976 4556665 4999999999999999874 56899999999999998
Q ss_pred cCccC-ccccCCCC--ccEEEcCCCeeeec
Q psy3567 228 INAIP-TCILTSSN--VCTLNVEGNLFEMK 254 (277)
Q Consensus 228 ~~~~~-~~~~~~~~--L~~l~l~~n~~~~~ 254 (277)
.+| ..+..++. ++.|++++|++...
T Consensus 177 --~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 --KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp --CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred --ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 555 46677776 48899999999864
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=4.4e-17 Score=131.28 Aligned_cols=146 Identities=26% Similarity=0.487 Sum_probs=116.9
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCccc-CccccCcccCceeecccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCN 133 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n 133 (277)
+.++++++.++.+|..+. ++++.|++++|+++.+++ .|..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578888888888886543 678888888888887765 588888888888888888876 667888888888888888
Q ss_pred cccccchh-hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccC
Q psy3567 134 LIKELPLS-FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQIC 204 (277)
Q Consensus 134 ~~~~l~~~-~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~ 204 (277)
.+..+|.. |..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++.. +..+ .+++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888754 67888888888888888876 45667788888888888888877654 4444 4888888888876
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=8.4e-19 Score=164.55 Aligned_cols=220 Identities=15% Similarity=0.163 Sum_probs=115.5
Q ss_pred CCceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc
Q psy3567 15 PSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL 94 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 94 (277)
+..+.|++.++.+.......+..+.+.. ..+..+++..+++...+..+..+ +.|+.|++++|.+..+|.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~----------~~i~~~~~~~n~~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQ----------YSIDEDDDIENRMVMPKDSKYDD-QLWHALDLSNLQIFNISA 241 (727)
T ss_dssp -----------------------------------------------------------CC-CCCCEEECTTSCCSCCCG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCc----------ccccCccccccceecChhhhccC-CCCcEEECCCCCCCCCCh
Confidence 4456677777766653222222222111 12334445555555444444444 889999999999998888
Q ss_pred cccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEE
Q psy3567 95 DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL 174 (277)
Q Consensus 95 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L 174 (277)
.+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+..+++|++|++++|.++.+|..++.+++|++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCE
T ss_pred hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEE
Confidence 87799999999999999998898899999999999999999999988999999999999999999998888899999999
Q ss_pred EccCCCCcc-cCchhccce--eeEEEccCCccC-cCCcCccCCCCCCEEEcCCC--------ccccCccCccccCCCCcc
Q psy3567 175 DLSFNRIES-IPDGIGKMK--VIEMNLNKNQIC-HISPDISECVRLKILRLEEN--------CLAINAIPTCILTSSNVC 242 (277)
Q Consensus 175 ~l~~n~l~~-l~~~~~~~~--l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n--------~~~~~~~~~~~~~~~~L~ 242 (277)
++++|.++. +|..+.... ...+++.+|.++ .+|. .|..|+++.| .+. +..+..+..+....
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~-~~~~~~~~~l~~~~ 394 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQ-QSTEHLATDLAKRT 394 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------
T ss_pred eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcc-ccccchhhcccccc
Confidence 999999984 455554433 334678888887 3433 4556666666 222 12222334455556
Q ss_pred EEEcCCCeee
Q psy3567 243 TLNVEGNLFE 252 (277)
Q Consensus 243 ~l~l~~n~~~ 252 (277)
...++.|.+.
T Consensus 395 ~~~ls~Nil~ 404 (727)
T 4b8c_D 395 FTVLSYNTLC 404 (727)
T ss_dssp -------CCC
T ss_pred eeeeeccccc
Confidence 6667777654
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=7e-17 Score=128.81 Aligned_cols=173 Identities=24% Similarity=0.326 Sum_probs=128.8
Q ss_pred ccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCc-cccCcccCceeecccccccccchh-hhcCCCCCEEEccCC
Q psy3567 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQN 156 (277)
Q Consensus 79 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~l~~n 156 (277)
-+.++.+++.+..+|..+ .+++++|++++|.+..++. .+..+++|++|++++|.+..++.. |..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356778888888777654 3578899999998887755 467888888888888888877654 678888888888888
Q ss_pred CCccCccc-cCCCCCCCEEEccCCCCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccC
Q psy3567 157 QLNKFPTV-LFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIP 232 (277)
Q Consensus 157 ~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~ 232 (277)
.+..++.. +..+++|++|++++|.++.++.. +..+ ++++|++++|+++.++.. +..+++|++|++++|++. +
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-C--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-C---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-c---
Confidence 88877654 56788888888888888877654 3444 478888888888877765 677788888888888765 2
Q ss_pred ccccCCCCccEEEcCCCeeeecccccccc
Q psy3567 233 TCILTSSNVCTLNVEGNLFEMKAFQQLDG 261 (277)
Q Consensus 233 ~~~~~~~~L~~l~l~~n~~~~~~~~~l~~ 261 (277)
.++++++++++.|.+++...+.+..
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCcc
Confidence 2346777777777777655554433
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=6.2e-17 Score=130.40 Aligned_cols=146 Identities=18% Similarity=0.334 Sum_probs=113.3
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc--cccccCCCcEEeccCCcCcccCc-cccCcccCceeeccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL--DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNC 132 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~ 132 (277)
++++++++.++.+|..+. +.+++|++++|+++.+++ .|..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578888888888886543 557888888888886633 37888888888888888887754 788888888888888
Q ss_pred ccccccch-hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCccc-Cchhccce-eeEEEccCCccC
Q psy3567 133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESI-PDGIGKMK-VIEMNLNKNQIC 204 (277)
Q Consensus 133 n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~~~~~~-l~~L~l~~n~l~ 204 (277)
|.+..++. .|..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+ |..+..++ +++|++++|.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88887764 477888888888888888876 45667788888888888888866 55565554 888888888876
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.5e-19 Score=164.96 Aligned_cols=175 Identities=20% Similarity=0.277 Sum_probs=148.3
Q ss_pred ccccEEEccCCCCCcCCccccccCCCcEEeccCCc-------------Cc-ccCccccCcccCceee-cccccccccch-
Q psy3567 77 AVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNK-------------IE-SLPKDIGTLEKLENVS-GNCNLIKELPL- 140 (277)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~-------------i~-~~~~~~~~l~~L~~L~-l~~n~~~~l~~- 140 (277)
++|+.|++++|+++.+|+.+.++++|+.|+++++. .. ..|..++.+++|+.|+ ++.|.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 78889999999999999999999999999997764 22 3355677888888888 67766554432
Q ss_pred -----hhhcC--CCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcCCcCccC
Q psy3567 141 -----SFSKL--HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDISE 212 (277)
Q Consensus 141 -----~~~~l--~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l~~~l~~ 212 (277)
.+..+ ..|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.++ |+.|++++|+++.+| .++.
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~ 506 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVAN 506 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCC
Confidence 12221 369999999999999987 8899999999999999999999888875 999999999999998 8999
Q ss_pred CCCCCEEEcCCCccccCcc-CccccCCCCccEEEcCCCeeeec
Q psy3567 213 CVRLKILRLEENCLAINAI-PTCILTSSNVCTLNVEGNLFEMK 254 (277)
Q Consensus 213 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~ 254 (277)
+++|+.|++++|.++ +.. |..+..+++|+.|++++|.+++.
T Consensus 507 l~~L~~L~Ls~N~l~-~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 507 LPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCcEEECCCCCCC-CCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 999999999999998 343 89999999999999999998865
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=4.2e-18 Score=159.81 Aligned_cols=189 Identities=21% Similarity=0.201 Sum_probs=103.8
Q ss_pred CccCEEEeecCCCCcCChhHHHhhccccEE-----EccCCCCCcCCccccccCCCcEEeccCCcCcccCccccCcccCce
Q psy3567 53 KKTGVINLSHQGFKEFPDEMNELKAVLRTL-----DISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN 127 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L-----~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~ 127 (277)
+.++.|++.++.+...+..+... ..|..+ ++..|.+...+..+..+..|+.|++++|.+..++..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~-l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQH-KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhc-CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 55778888888887766544332 222222 222333334455677888888888888888888877778888888
Q ss_pred eecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccce-eeEEEccCCccCcC
Q psy3567 128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHI 206 (277)
Q Consensus 128 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~-l~~L~l~~n~l~~l 206 (277)
|++++|.+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++.++ |++|++++|.++..
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 88888888888877888888888888888888888888888888888888888888887776664 88888888888743
Q ss_pred -CcCccCCC-CCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567 207 -SPDISECV-RLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249 (277)
Q Consensus 207 -~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 249 (277)
|..+.... ....+++++|.++ +.+|. .++.|+++.|
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l~-~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRPE-IPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC-CCCCC------C---------
T ss_pred ChHHHhhcchhhhHHhhccCccc-CcCcc------ccceeEeecc
Confidence 33343322 2234677788777 56665 3445555555
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=8.6e-17 Score=123.91 Aligned_cols=132 Identities=21% Similarity=0.215 Sum_probs=72.9
Q ss_pred CccCEEEeecCCCC--cCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcc-cCccccCcccCceee
Q psy3567 53 KKTGVINLSHQGFK--EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLENVS 129 (277)
Q Consensus 53 ~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~ 129 (277)
+++++|++++|.++ .+|..+..+ ++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l-~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGG-GGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhC-CCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45566666666665 555543333 5666666666665555 445556666666666666554 344444455555555
Q ss_pred cccccccccc--hhhhcCCCCCEEEccCCCCccCcc----ccCCCCCCCEEEccCCCCcccCc
Q psy3567 130 GNCNLIKELP--LSFSKLHNLKHLSLSQNQLNKFPT----VLFNLQHLDVLDLSFNRIESIPD 186 (277)
Q Consensus 130 l~~n~~~~l~--~~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~l~~l~~ 186 (277)
+++|.+..++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 5555555543 345555555555555555555544 44455555555555555554443
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.8e-16 Score=122.07 Aligned_cols=109 Identities=29% Similarity=0.307 Sum_probs=81.6
Q ss_pred ccccEEEccCCCCC--cCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccc-cchhhhcCCCCCEEEc
Q psy3567 77 AVLRTLDISQNKIS--KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSL 153 (277)
Q Consensus 77 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l 153 (277)
++++.|++++|++. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 67888888888887 7777778888888888888888776 667777788888888887776 5666666777888888
Q ss_pred cCCCCccCc--cccCCCCCCCEEEccCCCCcccCc
Q psy3567 154 SQNQLNKFP--TVLFNLQHLDVLDLSFNRIESIPD 186 (277)
Q Consensus 154 ~~n~l~~~~--~~l~~~~~L~~L~l~~n~l~~l~~ 186 (277)
++|.+..++ ..+..+++|++|++++|.++.+|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 777777665 456667777777777766665554
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=3.3e-17 Score=150.37 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=72.3
Q ss_pred CCCceeEecCCCCcCCCC--------CCceeeeccCCcc------hhHhhhccCccCEEEeecCCCCcCCh----hHHHh
Q psy3567 14 SPSKLTLLLPGKKNRGLI--------EGTIFVLKMGNSA------TKRHFETAKKTGVINLSHQGFKEFPD----EMNEL 75 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~--------~~~~~~l~~~~~~------~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~ 75 (277)
.+++++|++++|.+++.. +..+..+.+..+. +......+++|++|++++|.++.... .+...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 467888888888765442 2336666655433 12333477888888888887653321 12223
Q ss_pred hccccEEEccCCCCCcC-----CccccccCCCcEEeccCCcCcccCccccCcccCceeecc
Q psy3567 76 KAVLRTLDISQNKISKF-----PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGN 131 (277)
Q Consensus 76 ~~~L~~L~l~~~~i~~~-----~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~ 131 (277)
+++|+.|++++|.++.+ +..+.++++|++|++++|.+..++..+..+++|++++++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 37788888877777522 233456777888888877776666555566666666654
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=3.7e-16 Score=121.35 Aligned_cols=132 Identities=18% Similarity=0.292 Sum_probs=103.3
Q ss_pred hhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccCccc-cCcccCce
Q psy3567 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLEN 127 (277)
Q Consensus 49 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-~~l~~L~~ 127 (277)
+.++.++++|++++|.++.+|. +....++|++|++++|+++.+ +.+..+++|++|++++|.+..++..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4567788888888888887754 455545888888888888876 56788888888888888888776544 77888888
Q ss_pred eecccccccccch--hhhcCCCCCEEEccCCCCccCccc----cCCCCCCCEEEccCCCCc
Q psy3567 128 VSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLNKFPTV----LFNLQHLDVLDLSFNRIE 182 (277)
Q Consensus 128 L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~----l~~~~~L~~L~l~~n~l~ 182 (277)
|++++|.+..+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|+++.|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888887776 677888888888888888877664 667788888888877665
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3e-15 Score=117.93 Aligned_cols=123 Identities=24% Similarity=0.355 Sum_probs=82.1
Q ss_pred cEEeccCCcCcccCccccCcccCceeecccccccccchh--hhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCC
Q psy3567 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLS--FSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFN 179 (277)
Q Consensus 103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~--~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n 179 (277)
++++++++.+..+|..+.. ++++|++++|.+..++.. +..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6778888888777765543 777788887777766542 67777777777777777765 456667777777777777
Q ss_pred CCcccCch-hccc-eeeEEEccCCccCcC-CcCccCCCCCCEEEcCCCccc
Q psy3567 180 RIESIPDG-IGKM-KVIEMNLNKNQICHI-SPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 180 ~l~~l~~~-~~~~-~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~ 227 (277)
.++.++.. +..+ ++++|++++|+++.+ |..+..+++|++|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77755443 3333 366666666666644 334556666666666666665
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.4e-15 Score=114.61 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=78.9
Q ss_pred ccCceeeccccccc--ccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcc-cCchhccc-eeeEEEc
Q psy3567 123 EKLENVSGNCNLIK--ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIES-IPDGIGKM-KVIEMNL 198 (277)
Q Consensus 123 ~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~-l~~~~~~~-~l~~L~l 198 (277)
++++++++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+ ++++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 44555555555554 4555555566666666666666655 455566666666666666665 44444433 3667777
Q ss_pred cCCccCcCC--cCccCCCCCCEEEcCCCccccCccCc----cccCCCCccEEEcCC
Q psy3567 199 NKNQICHIS--PDISECVRLKILRLEENCLAINAIPT----CILTSSNVCTLNVEG 248 (277)
Q Consensus 199 ~~n~l~~l~--~~l~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~l~l~~ 248 (277)
++|+++.++ ..+..+++|++|++++|.++ .+|. .+..+++|++|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVT--NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGG--GSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCccc--chHHHHHHHHHHCCCcccccCCC
Confidence 777777654 55777888888888888887 3443 577788888887763
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.8e-15 Score=117.41 Aligned_cols=124 Identities=23% Similarity=0.416 Sum_probs=108.8
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccC-ccccCcccCceeeccccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCNL 134 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n~ 134 (277)
++++++++.++.+|..+. ++++.|++++|+++.+|..+.++++|++|++++|.++.++ ..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 678999999999997543 6899999999999999988999999999999999999875 468899999999999999
Q ss_pred ccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCc
Q psy3567 135 IKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIE 182 (277)
Q Consensus 135 ~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~ 182 (277)
+..++. .|..+++|++|++++|.+..++.. +..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 998764 588999999999999999988764 667899999999998876
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.5e-15 Score=113.26 Aligned_cols=108 Identities=22% Similarity=0.284 Sum_probs=62.1
Q ss_pred ccccEEEccCCCCC--cCCccccccCCCcEEeccCCcCcccCccccCcccCceeecccccccc-cchhhhcCCCCCEEEc
Q psy3567 77 AVLRTLDISQNKIS--KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSL 153 (277)
Q Consensus 77 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~-l~~~~~~l~~L~~L~l 153 (277)
++++.|++++|.+. .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666666666665 5555556666666666666666555 455555666666666666554 4444555566666666
Q ss_pred cCCCCccCc--cccCCCCCCCEEEccCCCCcccC
Q psy3567 154 SQNQLNKFP--TVLFNLQHLDVLDLSFNRIESIP 185 (277)
Q Consensus 154 ~~n~l~~~~--~~l~~~~~L~~L~l~~n~l~~l~ 185 (277)
++|.++.++ ..+..+++|++|++++|.++.++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 666655543 44455555555555555554443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=3.7e-15 Score=117.41 Aligned_cols=124 Identities=24% Similarity=0.403 Sum_probs=107.5
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc--ccccCCCcEEeccCCcCccc-CccccCcccCceeeccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD--LASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNC 132 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~ 132 (277)
+++++++++++.+|..+. .+++.|++++|+++.+++. +..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999999999997553 5799999999999987763 88999999999999999977 66889999999999999
Q ss_pred ccccccch-hhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCc
Q psy3567 133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIE 182 (277)
Q Consensus 133 n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~ 182 (277)
|.+..++. .|..+++|++|++++|.+..+ |..+..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99987764 488899999999999999865 667778899999999999887
No 126
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=2.4e-16 Score=144.59 Aligned_cols=232 Identities=12% Similarity=0.039 Sum_probs=130.0
Q ss_pred CCCceeEecCCCCc---CCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCc-CChhHHHhhcc-ccEEEccCCC
Q psy3567 14 SPSKLTLLLPGKKN---RGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKE-FPDEMNELKAV-LRTLDISQNK 88 (277)
Q Consensus 14 ~~~l~~l~l~~~~~---~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~-L~~L~l~~~~ 88 (277)
.+++++|++++|.. .+.+|..+... ....+......++.|++|+++++.++. .+..+...++. |++|++++|.
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGY--VTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCB--CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred CCCCeEEEecCCcchhhccccccccccc--chHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 45688999988753 23444332211 011122344478888888888887762 23334443344 8888888875
Q ss_pred -CC--cCCccccccCCCcEEeccCCcCccc-----CccccCcccCceeeccccccc-----ccchhhhcCCCCCEEEccC
Q psy3567 89 -IS--KFPLDLASYQLLKSLTFDQNKIESL-----PKDIGTLEKLENVSGNCNLIK-----ELPLSFSKLHNLKHLSLSQ 155 (277)
Q Consensus 89 -i~--~~~~~~~~l~~L~~L~l~~~~i~~~-----~~~~~~l~~L~~L~l~~n~~~-----~l~~~~~~l~~L~~L~l~~ 155 (277)
+. .++....++++|++|++++|.+... +.....+++|++|++++|.+. .++..+..+++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 22 1222234678888888888876532 223445777888888877775 2334456777888888888
Q ss_pred CCCccCccccCCCCCCCEEEccCCCCc----ccCchhccc-eeeEEEccCCccCcCCcCccCCCCCCEEEcCCCccccCc
Q psy3567 156 NQLNKFPTVLFNLQHLDVLDLSFNRIE----SIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA 230 (277)
Q Consensus 156 n~l~~~~~~l~~~~~L~~L~l~~n~l~----~l~~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~~ 230 (277)
|.+..++..+..+++|++|+++..... ..+..+... +++.++++++....+|..+..+++|++|++++|.++...
T Consensus 230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 777766666666677777777532111 111122222 245555555444445554555555555555555544222
Q ss_pred cCccccCCCCccEEEcC
Q psy3567 231 IPTCILTSSNVCTLNVE 247 (277)
Q Consensus 231 ~~~~~~~~~~L~~l~l~ 247 (277)
++..+..+++|++|+++
T Consensus 310 ~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhCcCCCEEecc
Confidence 22233444555555554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.8e-15 Score=117.41 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=77.9
Q ss_pred CcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEc
Q psy3567 121 TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNL 198 (277)
Q Consensus 121 ~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l 198 (277)
.+.+|++|++++|.+..++......++|++|++++|.+..+ ..+..+++|++|++++|.++.+|..+ ..+ .+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 34444444444444444432222222566666666665555 44555666666666666666555433 333 3666666
Q ss_pred cCCccCcCCc--CccCCCCCCEEEcCCCccccCccCcc----ccCCCCccEEEcCCCeeee
Q psy3567 199 NKNQICHISP--DISECVRLKILRLEENCLAINAIPTC----ILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 199 ~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~l~l~~n~~~~ 253 (277)
++|+++.+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|....
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 6777666665 5677788888888888876 55653 6777888888888776543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=113.73 Aligned_cols=123 Identities=22% Similarity=0.346 Sum_probs=83.2
Q ss_pred cEEeccCCcCcccCccccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCC
Q psy3567 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRI 181 (277)
Q Consensus 103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l 181 (277)
+.++++++.+..+|..+. +++++|++++|.+..+|..|..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 567788888877776543 46777888888777777777777778888888777776653 456677777777777777
Q ss_pred cccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 182 ESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 182 ~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
+.++.. +..+ ++++|++++|+++.++.. +..+++|+.|++++|++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 765442 3333 366666666666666553 555666666666666654
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=2.7e-14 Score=121.78 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=43.7
Q ss_pred CCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCchh-ccce-ee-EEEccCCccCcCCc-CccCCCCCCEE
Q psy3567 145 LHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDGI-GKMK-VI-EMNLNKNQICHISP-DISECVRLKIL 219 (277)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~~-~~~~-l~-~L~l~~n~l~~l~~-~l~~~~~L~~L 219 (277)
+++|+.+++.+|++..++. .+..+.+|+.+++.+| ++.++... ..+. |+ .+++.+ .++.++. +|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 3445555555555554443 2334445555555444 44443332 2222 44 455544 4444442 24455555555
Q ss_pred EcCCCccccCccCccccCCCCccEEE
Q psy3567 220 RLEENCLAINAIPTCILTSSNVCTLN 245 (277)
Q Consensus 220 ~l~~n~~~~~~~~~~~~~~~~L~~l~ 245 (277)
++++|.++ ..-+.+|.++++|+.++
T Consensus 303 ~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EeCCCccC-ccchhhhcCCcchhhhc
Confidence 55555444 11123444455555443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=8.4e-14 Score=107.99 Aligned_cols=126 Identities=29% Similarity=0.417 Sum_probs=104.5
Q ss_pred cCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCcccCc-cccCcccCceeeccc
Q psy3567 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNC 132 (277)
Q Consensus 55 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~ 132 (277)
.+.+++++++++.+|..+. ++++.|++++|+++.+++. +..+++|++|++++|.+..++. .++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4778999999998886443 6899999999999877764 6889999999999999988765 468889999999999
Q ss_pred ccccccchh-hhcCCCCCEEEccCCCCccCcccc-CCCCCCCEEEccCCCCcc
Q psy3567 133 NLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVL-FNLQHLDVLDLSFNRIES 183 (277)
Q Consensus 133 n~~~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~l-~~~~~L~~L~l~~n~l~~ 183 (277)
|.+..++.. +..+++|++|++++|.+..+|... ..+++|++|++++|.++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 998887654 678889999999999988887654 568889999999988774
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.3e-16 Score=126.26 Aligned_cols=133 Identities=25% Similarity=0.346 Sum_probs=81.5
Q ss_pred cccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCccccCCCCCCCEEEccCCCCcccCchhccc-eeeEE
Q psy3567 118 DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEM 196 (277)
Q Consensus 118 ~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~-~l~~L 196 (277)
.+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+ .+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4445555555555555555554 455555555555555555555544444456666666666666554 23333 36677
Q ss_pred EccCCccCcCCc--CccCCCCCCEEEcCCCccccCccCc----------cccCCCCccEEEcCCCeeeecc
Q psy3567 197 NLNKNQICHISP--DISECVRLKILRLEENCLAINAIPT----------CILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 197 ~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
++++|+++.++. .+..+++|++|++++|++. +..|. .+..+++|+.|+ ++.++.++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY-NDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHH-HHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccc-cccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence 777777776654 4677888899999888886 34333 267788888875 67666543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=3.2e-16 Score=124.10 Aligned_cols=134 Identities=24% Similarity=0.231 Sum_probs=85.7
Q ss_pred CceeEecCCCCcCCCCCCceeeeccCCcchhHhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCcc
Q psy3567 16 SKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD 95 (277)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 95 (277)
.+..++++++.+.|..|. +. .++..+..+++|++|++++|.++.+| .+..+ ++|++|++++|++..+|..
T Consensus 19 ~l~~l~l~~~~l~~~~~~-l~-------~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l-~~L~~L~l~~n~l~~l~~~ 88 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPP-IE-------KMDATLSTLKACKHLALSTNNIEKIS-SLSGM-ENLRILSLGRNLIKKIENL 88 (198)
T ss_dssp CCCCTTCSEEECCBCCTT-CC-------CCHHHHHHTTTCSEEECSEEEESCCC-CHHHH-TTCCEEEEEEEEECSCSSH
T ss_pred cccCcchheeEeccccCc-Hh-------hhhHHHhcCCCCCEEECCCCCCcccc-ccccC-CCCCEEECCCCCcccccch
Confidence 555566666666665442 11 12335666777777777777777766 45555 6777777777777766666
Q ss_pred ccccCCCcEEeccCCcCcccCccccCcccCceeecccccccccch--hhhcCCCCCEEEccCCCCcc
Q psy3567 96 LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL--SFSKLHNLKHLSLSQNQLNK 160 (277)
Q Consensus 96 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~l~~ 160 (277)
+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++. .+..+++|++|++++|.+..
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 666667777777777776655 46666667777777776665543 46666667777776666653
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=2.2e-13 Score=105.57 Aligned_cols=125 Identities=24% Similarity=0.378 Sum_probs=63.7
Q ss_pred cEEeccCCcCcccCccccCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCC
Q psy3567 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNR 180 (277)
Q Consensus 103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~ 180 (277)
+.++++++.+..+|..+. +++++|++++|.+..++. .+..+++|++|++++|.+..++.. +..+++|
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------- 78 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL--------- 78 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC---------
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc---------
Confidence 455555555555543322 345555555555554433 234445555555555555444332 2344444
Q ss_pred CcccCchhccceeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCc-cccCCCCccEEEcCCCeeee
Q psy3567 181 IESIPDGIGKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPT-CILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 181 l~~l~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~ 253 (277)
++|++++|+++.++.. +..+++|++|++++|.++ .+|. .+..+++|++|++++|++++
T Consensus 79 -------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 79 -------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcce--EeCHHHhcCCcccCEEEecCCCeec
Confidence 4455555555544443 455566666666666665 3333 34556666666666666654
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1.1e-15 Score=140.24 Aligned_cols=229 Identities=16% Similarity=0.160 Sum_probs=131.2
Q ss_pred CCceeEecCCCCcCCC---CCCceeeeccCCcchhHhhhccCccCEEEeecCCCC-cCChhHHHhhccccEEEccCC-CC
Q psy3567 15 PSKLTLLLPGKKNRGL---IEGTIFVLKMGNSATKRHFETAKKTGVINLSHQGFK-EFPDEMNELKAVLRTLDISQN-KI 89 (277)
Q Consensus 15 ~~l~~l~l~~~~~~~~---~~~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~-~i 89 (277)
+++++|+++++..... .|..+... ....+......+++|++|+++++.++ ..+..+...+++|++|++++| .+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGY--VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCB--CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCceEEeccCCCchhhcccccccccch--hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 5788888888753221 12211000 00111233457788888888888777 233344433478888888888 44
Q ss_pred Cc--CCccccccCCCcEEeccCCcCccc-----CccccCcccCceeeccccc--cc--ccchhhhcCCCCCEEEccCC-C
Q psy3567 90 SK--FPLDLASYQLLKSLTFDQNKIESL-----PKDIGTLEKLENVSGNCNL--IK--ELPLSFSKLHNLKHLSLSQN-Q 157 (277)
Q Consensus 90 ~~--~~~~~~~l~~L~~L~l~~~~i~~~-----~~~~~~l~~L~~L~l~~n~--~~--~l~~~~~~l~~L~~L~l~~n-~ 157 (277)
+. ++..+.++++|++|++++|.++.. +.....+++|++|+++++. +. .++..+..+++|++|++++| .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 334445788888888888876532 2223356788888888776 11 12223455688888888877 3
Q ss_pred CccCccccCCCCCCCEEEccCCCC-------------------------------cccCchhccc-eeeEEEccCCccCc
Q psy3567 158 LNKFPTVLFNLQHLDVLDLSFNRI-------------------------------ESIPDGIGKM-KVIEMNLNKNQICH 205 (277)
Q Consensus 158 l~~~~~~l~~~~~L~~L~l~~n~l-------------------------------~~l~~~~~~~-~l~~L~l~~n~l~~ 205 (277)
+..++..+..+++|++|+++.+.. ..++...... ++++|++++|.++.
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 334555555667777777554421 1122222222 36677777766552
Q ss_pred --CCcCccCCCCCCEEEcCCCccccCccCccccCCCCccEEEc
Q psy3567 206 --ISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNV 246 (277)
Q Consensus 206 --l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 246 (277)
+...+..+++|+.|++++| ++...++.....+++|++|++
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 2223456667777777766 442333333344667777766
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1e-15 Score=140.38 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=134.3
Q ss_pred CCCceeEecCCCCcCCCCCCceeeeccCCcchhHhhh-ccCccCEEEeecC-CCCc--CChhHHHhhccccEEEccCCCC
Q psy3567 14 SPSKLTLLLPGKKNRGLIEGTIFVLKMGNSATKRHFE-TAKKTGVINLSHQ-GFKE--FPDEMNELKAVLRTLDISQNKI 89 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~--~~~~~~~~~~~L~~L~l~~~~i 89 (277)
.+++++|++++|.+++..+ ..+. .+++|++|++++| .++. ++. +...+++|++|++++|.+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~--------------~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i 168 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCL--------------ELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDV 168 (594)
T ss_dssp CTTCCEEEEESCBCCHHHH--------------HHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEE
T ss_pred CCCCCeEEeeCcEEcHHHH--------------HHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCcc
Confidence 4578889999887654422 1222 4667777777777 4442 333 232236777777777765
Q ss_pred CcC-----CccccccCCCcEEeccCCc--Cc--ccCccccCcccCceeecccc-cccccchhhhcCCCCCEEEccCC---
Q psy3567 90 SKF-----PLDLASYQLLKSLTFDQNK--IE--SLPKDIGTLEKLENVSGNCN-LIKELPLSFSKLHNLKHLSLSQN--- 156 (277)
Q Consensus 90 ~~~-----~~~~~~l~~L~~L~l~~~~--i~--~~~~~~~~l~~L~~L~l~~n-~~~~l~~~~~~l~~L~~L~l~~n--- 156 (277)
+.. +.....+++|++|+++++. +. .+......+++|++|++++| .+..++..+..+++|++|+++.+
T Consensus 169 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 248 (594)
T 2p1m_B 169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248 (594)
T ss_dssp ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC
T ss_pred CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc
Confidence 432 2222355677777777665 21 11122234566777777665 33344445555566666654333
Q ss_pred ----------------------------CCccCccccCCCCCCCEEEccCCCCcc--cCchhccc-eeeEEEccCCccC-
Q psy3567 157 ----------------------------QLNKFPTVLFNLQHLDVLDLSFNRIES--IPDGIGKM-KVIEMNLNKNQIC- 204 (277)
Q Consensus 157 ----------------------------~l~~~~~~l~~~~~L~~L~l~~n~l~~--l~~~~~~~-~l~~L~l~~n~l~- 204 (277)
....++..+..+++|++|++++|.++. ++..+... ++++|++++| ++
T Consensus 249 ~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~ 327 (594)
T 2p1m_B 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED 327 (594)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence 112333333457899999999999772 33323344 4999999988 44
Q ss_pred -cCCcCccCCCCCCEEEcC---------CCccccCccCccccCCCCccEEEcCCCeeeecc
Q psy3567 205 -HISPDISECVRLKILRLE---------ENCLAINAIPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 205 -~l~~~l~~~~~L~~L~l~---------~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
.++.....+++|+.|++. .+.++...+......+++|++|.++.|.++...
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 233334468999999993 345553333333345899999999999887543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=2.7e-13 Score=115.60 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=152.7
Q ss_pred CCCceeEecCCCCcC--C----CCCCceeeeccCCcch-hHhhhc--------cCccCEEEeecCCCCcCChhHHHhhcc
Q psy3567 14 SPSKLTLLLPGKKNR--G----LIEGTIFVLKMGNSAT-KRHFET--------AKKTGVINLSHQGFKEFPDEMNELKAV 78 (277)
Q Consensus 14 ~~~l~~l~l~~~~~~--~----~~~~~~~~l~~~~~~~-~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~ 78 (277)
.++++.|||++|.+. . .++. ........+.+ ..+|.. |++|+.+++.+ .++.+++..|..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~-~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPN-GKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGG-GCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccc-cccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 568999999999887 1 2222 11111222233 367788 99999999999 999999888888899
Q ss_pred ccEEEccCCCCCcCCc-cccccCCCcEEeccCCcC----cccC-ccc---------------------------------
Q psy3567 79 LRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKI----ESLP-KDI--------------------------------- 119 (277)
Q Consensus 79 L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i----~~~~-~~~--------------------------------- 119 (277)
|+.+++.+|.+..+++ .|..+..+..+....... ..+. .++
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 9999999999887665 477777777776655211 0000 000
Q ss_pred -----------------cCcccCceeecccccccccch-hhhcCCCCCEEEccCCCCccCcc-ccCCCCCCC-EEEccCC
Q psy3567 120 -----------------GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLD-VLDLSFN 179 (277)
Q Consensus 120 -----------------~~l~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~-~L~l~~n 179 (277)
..+++|+.+++..|.+..++. .|..+.+|+.+++..| +..++. ++..+.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 126789999999999999986 5999999999999997 777764 566899999 999988
Q ss_pred CCcccCch-hccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEc
Q psy3567 180 RIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRL 221 (277)
Q Consensus 180 ~l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l 221 (277)
.++.++.. +..+ .|+++++..|+++.++.. |..|++|+.+..
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77777644 4444 599999999999999874 889999998863
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.6e-12 Score=100.19 Aligned_cols=101 Identities=26% Similarity=0.379 Sum_probs=57.9
Q ss_pred CceeecccccccccchhhhcCCCCCEEEccCCCCccC-ccccCCCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCC
Q psy3567 125 LENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKN 201 (277)
Q Consensus 125 L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n 201 (277)
.+.++++++.+..+|..+. +++++|++++|.+..+ |..+..+++|++|++++|.++.++... ..+ ++++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4566666666666665442 5566666666666655 334555666666666666666555443 233 3555566666
Q ss_pred ccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 202 QICHISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 202 ~l~~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
+++.++.. +..+++|++|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55555543 555555556666555554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.3e-12 Score=99.68 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=55.7
Q ss_pred CEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccCCcCcccCccccCcccCceeeccccc
Q psy3567 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNL 134 (277)
Q Consensus 56 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~ 134 (277)
+.+++++++++.+|+.+. ++|+.|++++|++..++ ..|.++++|++|++++|++..++..
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~---------------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG---------------- 75 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh----------------
Confidence 456666666666665432 45666666666666553 3455556666666666555555432
Q ss_pred ccccchhhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCCCcc
Q psy3567 135 IKELPLSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNRIES 183 (277)
Q Consensus 135 ~~~l~~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~ 183 (277)
.|..+++|++|++++|.+..+|.. +..+++|++|++++|.+..
T Consensus 76 ------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 76 ------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 134445555555555555554433 4445555555555555543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=5.9e-12 Score=97.35 Aligned_cols=105 Identities=29% Similarity=0.394 Sum_probs=86.5
Q ss_pred cEEeccCCcCcccCccccCcccCceeeccccccccc-chhhhcCCCCCEEEccCCCCccCccc-cCCCCCCCEEEccCCC
Q psy3567 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV-LFNLQHLDVLDLSFNR 180 (277)
Q Consensus 103 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~ 180 (277)
+.++++++++..+|..+. ++|++|++++|.+..+ |..|..+++|++|++++|++..+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776554 6788888888888876 45688999999999999999999875 4689999999999999
Q ss_pred CcccCch-hccc-eeeEEEccCCccCcCCcC
Q psy3567 181 IESIPDG-IGKM-KVIEMNLNKNQICHISPD 209 (277)
Q Consensus 181 l~~l~~~-~~~~-~l~~L~l~~n~l~~l~~~ 209 (277)
++.+|.. +..+ ++++|++++|.+...+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 9988876 5555 499999999999976653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=7.1e-12 Score=96.50 Aligned_cols=101 Identities=30% Similarity=0.411 Sum_probs=49.1
Q ss_pred cEEEccCCCCCcCCccccccCCCcEEeccCCcCccc-CccccCcccCceeecccccccccchh-hhcCCCCCEEEccCCC
Q psy3567 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQ 157 (277)
Q Consensus 80 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~l~~n~ 157 (277)
+.++++++.++.+|..+. +.+++|++++|.+..+ +..+..+++|++|++++|.+..++.. |..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 334444444444443321 3444444444444443 22344444444444444444444432 4555566666666666
Q ss_pred CccCcc-ccCCCCCCCEEEccCCCCc
Q psy3567 158 LNKFPT-VLFNLQHLDVLDLSFNRIE 182 (277)
Q Consensus 158 l~~~~~-~l~~~~~L~~L~l~~n~l~ 182 (277)
+..++. .+..+++|++|++++|.++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 655544 2445566666666666554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=5.6e-11 Score=103.91 Aligned_cols=195 Identities=12% Similarity=0.165 Sum_probs=123.9
Q ss_pred HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCccc
Q psy3567 47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEK 124 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~ 124 (277)
.+|..|++|+.+++.+++++.++...+.. .+|+.+.+.. .+..++. .|.++++|+.+++..+ +..++. +|.. .+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~-~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTT-CCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEee-cccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 56777777777777777777777766665 6777777764 3555544 4777777777777763 455533 4544 56
Q ss_pred Cceeecccccccccc-hhhhcCCCCCEEEccCCCCc-----cCc-cccCCCCCCCEEEccCCCCcccCchhc-cc-eeeE
Q psy3567 125 LENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLN-----KFP-TVLFNLQHLDVLDLSFNRIESIPDGIG-KM-KVIE 195 (277)
Q Consensus 125 L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~-----~~~-~~l~~~~~L~~L~l~~n~l~~l~~~~~-~~-~l~~ 195 (277)
|+.+.+ .+.+..++ ..|..+++|+.+.+.++.+. .++ ..+..+++|+.+.+.+ .++.++...+ .+ +|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 777777 33445554 35777778888877776554 343 3455677788887773 4665554433 32 4777
Q ss_pred EEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCccCccccCCC-CccEEEcCCCe
Q psy3567 196 MNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSS-NVCTLNVEGNL 250 (277)
Q Consensus 196 L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~l~l~~n~ 250 (277)
+.+..+ ++.+... |..| +|+.+++.+|.+. ...+..+..++ .++.+++..+.
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence 777443 6666543 6667 7888888777665 23334555553 57777777654
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=2.9e-13 Score=117.25 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=119.1
Q ss_pred hccccEEEccCCCCCcCC-----cccc-ccCCCcEEeccCCcCccc--CccccCcccCceeeccccccccc-----chhh
Q psy3567 76 KAVLRTLDISQNKISKFP-----LDLA-SYQLLKSLTFDQNKIESL--PKDIGTLEKLENVSGNCNLIKEL-----PLSF 142 (277)
Q Consensus 76 ~~~L~~L~l~~~~i~~~~-----~~~~-~l~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~n~~~~l-----~~~~ 142 (277)
.+.++.|++++|.++... ..+. ..+.|++|++++|.+... ..-...+.+|++|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 378999999999987422 2222 236899999999998742 22223456789999999988743 2223
Q ss_pred -hcCCCCCEEEccCCCCcc-----CccccCCCCCCCEEEccCCCCcc-----cCchhccc-eeeEEEccCCccC-----c
Q psy3567 143 -SKLHNLKHLSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNRIES-----IPDGIGKM-KVIEMNLNKNQIC-----H 205 (277)
Q Consensus 143 -~~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~~-~l~~L~l~~n~l~-----~ 205 (277)
...++|++|++++|.++. ++..+..+++|++|++++|.++. ++..+... .+++|++++|.|+ .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999998873 44555678889999999999873 23333333 4889999999988 3
Q ss_pred CCcCccCCCCCCEEEcCCCccccCccCccccCC---C--CccEEE--cCCCeeeecc
Q psy3567 206 ISPDISECVRLKILRLEENCLAINAIPTCILTS---S--NVCTLN--VEGNLFEMKA 255 (277)
Q Consensus 206 l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~--~L~~l~--l~~n~~~~~~ 255 (277)
++..+..+++|++|++++|.++... ...+... . .++.+. +.++.++.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g-~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~ 286 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEG-RQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHH-HHHHHHCC------CEEECCCC----CHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHH-HHHHHHHhcCCCccchhhHhhhcCCccCHHH
Confidence 4455667788999999999887322 2233322 2 266666 6677666543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.3e-12 Score=113.22 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=86.2
Q ss_pred CccCEEEeecCCCCcCC-hhHHHh----hccccEEEccCCCCCcC--CccccccCCCcEEeccCCcCccc-----Cccc-
Q psy3567 53 KKTGVINLSHQGFKEFP-DEMNEL----KAVLRTLDISQNKISKF--PLDLASYQLLKSLTFDQNKIESL-----PKDI- 119 (277)
Q Consensus 53 ~~L~~L~l~~~~i~~~~-~~~~~~----~~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~i~~~-----~~~~- 119 (277)
+.++.|++++|.++... ..+... +++|+.|++++|.++.. ..-...+++|++|++++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777777666322 112211 14677777777766521 11123345667777777766532 1222
Q ss_pred cCcccCceeecccccccc-----cchhhhcCCCCCEEEccCCCCcc-----CccccCCCCCCCEEEccCCCCcc-----c
Q psy3567 120 GTLEKLENVSGNCNLIKE-----LPLSFSKLHNLKHLSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNRIES-----I 184 (277)
Q Consensus 120 ~~l~~L~~L~l~~n~~~~-----l~~~~~~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l 184 (277)
...+.|++|++++|.+.. ++..+...++|++|++++|.++. ++..+...++|++|++++|.++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 235567777777776653 33445666777777777777662 23445556677777777777762 2
Q ss_pred Cchhccc-eeeEEEccCCccC
Q psy3567 185 PDGIGKM-KVIEMNLNKNQIC 204 (277)
Q Consensus 185 ~~~~~~~-~l~~L~l~~n~l~ 204 (277)
+..+... .+++|++++|.|+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 2222222 3777777777776
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.21 E-value=3e-10 Score=99.32 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=102.2
Q ss_pred cCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCccccccCCCcEEeccCCcCcccC-ccccCcccCceeecccc
Q psy3567 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP-KDIGTLEKLENVSGNCN 133 (277)
Q Consensus 55 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~n 133 (277)
|+.+.+.+ .++.+++..|..+.+|+.+++.+|.+..++...-...+|+.+.+..+ +..++ .+|..+.+|+.+.+..+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 44444433 33344333333334444444444444444332111344444444422 33332 24445555555555432
Q ss_pred cccccch-hhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCCc-----ccCch-hccc-eeeEEEccCCccC
Q psy3567 134 LIKELPL-SFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIE-----SIPDG-IGKM-KVIEMNLNKNQIC 204 (277)
Q Consensus 134 ~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l~-----~l~~~-~~~~-~l~~L~l~~n~l~ 204 (277)
+..++. .|.. .+|+.+.+ .+++..++ .++..+++|+.+++.++.+. .++.. +..+ +|+.+.+. +.++
T Consensus 237 -l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~ 312 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR 312 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC
T ss_pred -ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE
Confidence 333332 2333 45555555 23345553 34556788888888777654 34433 3333 48888887 4577
Q ss_pred cCCcC-ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCeee
Q psy3567 205 HISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252 (277)
Q Consensus 205 ~l~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 252 (277)
.++.. |..|++|+.+.+..+ ++ ..-+.+|..+ +|+.+++++|...
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence 77754 778889999998655 44 2224577778 8999999888554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=3.6e-10 Score=96.77 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=73.0
Q ss_pred CEEEeecC-CCCcCChhHHHhhccccEEEccC-CCCCcCCc-cccccCCCcEEeccCCcCcccCc-cccCcccCceeecc
Q psy3567 56 GVINLSHQ-GFKEFPDEMNELKAVLRTLDISQ-NKISKFPL-DLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGN 131 (277)
Q Consensus 56 ~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~ 131 (277)
..++++++ +++.+|. +..+ .+|++|++++ |.++.+++ .|.++++|++|++++|++..++. .|..+++|++|+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 7888887 5544 6788888875 78876664 57788888888888888876644 66777888888888
Q ss_pred cccccccchhhhcCCCCCEEEccCCCCc
Q psy3567 132 CNLIKELPLSFSKLHNLKHLSLSQNQLN 159 (277)
Q Consensus 132 ~n~~~~l~~~~~~l~~L~~L~l~~n~l~ 159 (277)
+|.+..+|........|+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCcc
Confidence 8887777654333333777888777766
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=4.9e-10 Score=95.88 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=73.2
Q ss_pred ceeecccc-cccccchhhhcCCCCCEEEccC-CCCccCc-cccCCCCCCCEEEccCCCCcccCc-hhccc-eeeEEEccC
Q psy3567 126 ENVSGNCN-LIKELPLSFSKLHNLKHLSLSQ-NQLNKFP-TVLFNLQHLDVLDLSFNRIESIPD-GIGKM-KVIEMNLNK 200 (277)
Q Consensus 126 ~~L~l~~n-~~~~l~~~~~~l~~L~~L~l~~-n~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~-~l~~L~l~~ 200 (277)
..++++++ .+..+|. +..+++|+.|++++ |.+..++ ..+..+++|++|+|++|.++.++. .+..+ .|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 34577776 7778887 87888888888885 8888776 456678888888888888886654 34545 377888888
Q ss_pred CccCcCCcCccCCCCCCEEEcCCCccc
Q psy3567 201 NQICHISPDISECVRLKILRLEENCLA 227 (277)
Q Consensus 201 n~l~~l~~~l~~~~~L~~L~l~~n~~~ 227 (277)
|+|+.+|........|+.|++++|++.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 888877766444344788888887776
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=6.3e-09 Score=89.54 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=95.3
Q ss_pred ccccEEEccCCCCC----------cCCccccccCCCcEEeccCCcCcccCccccCcccCceeeccccccccc-chhh--h
Q psy3567 77 AVLRTLDISQNKIS----------KFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL-PLSF--S 143 (277)
Q Consensus 77 ~~L~~L~l~~~~i~----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~n~~~~l-~~~~--~ 143 (277)
++|+.|.+.+.... .++..+..+++|+.|.++++.-..++. + .+++|++|++..+.+..- ...+ .
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 66777766543221 122334556777777777663122332 2 267777777776665421 1122 2
Q ss_pred cCCCCCEEEccCC--C------CccCcccc--CCCCCCCEEEccCCCCcc-cCchhc---cc-eeeEEEccCCccCc---
Q psy3567 144 KLHNLKHLSLSQN--Q------LNKFPTVL--FNLQHLDVLDLSFNRIES-IPDGIG---KM-KVIEMNLNKNQICH--- 205 (277)
Q Consensus 144 ~l~~L~~L~l~~n--~------l~~~~~~l--~~~~~L~~L~l~~n~l~~-l~~~~~---~~-~l~~L~l~~n~l~~--- 205 (277)
.+++|++|+++.+ . +..+...+ ..+++|++|.+.+|.++. .+..+. .+ .|++|+++.|.++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 5777888877431 1 11222222 246888888888888762 222221 22 47888888887773
Q ss_pred --CCcCccCCCCCCEEEcCCCccccCccCccccC-CCCccEEEcCCCe
Q psy3567 206 --ISPDISECVRLKILRLEENCLAINAIPTCILT-SSNVCTLNVEGNL 250 (277)
Q Consensus 206 --l~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~l~l~~n~ 250 (277)
++..+..+++|+.|++++|.++. ..-..+.. + ..+++++++.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d-~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSD-EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCH-HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHhhcccCCcceEEECCCCcCCH-HHHHHHHHHc--CCEEEecCCc
Confidence 44444566788888888887762 22223332 2 3557777765
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=1.5e-09 Score=84.56 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=74.0
Q ss_pred hhhcCCCCCEEEccCC-CCc-----cCccccCCCCCCCEEEccCCCCcc-----cCchhccc-eeeEEEccCCccC----
Q psy3567 141 SFSKLHNLKHLSLSQN-QLN-----KFPTVLFNLQHLDVLDLSFNRIES-----IPDGIGKM-KVIEMNLNKNQIC---- 204 (277)
Q Consensus 141 ~~~~l~~L~~L~l~~n-~l~-----~~~~~l~~~~~L~~L~l~~n~l~~-----l~~~~~~~-~l~~L~l~~n~l~---- 204 (277)
.+...++|++|++++| .+. .+...+...++|++|++++|.++. +...+... .+++|++++|.|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 555 233444555667777777776651 22222222 3677777777776
Q ss_pred -cCCcCccCCCCCCEEEc--CCCccccCc---cCccccCCCCccEEEcCCCeeeecc
Q psy3567 205 -HISPDISECVRLKILRL--EENCLAINA---IPTCILTSSNVCTLNVEGNLFEMKA 255 (277)
Q Consensus 205 -~l~~~l~~~~~L~~L~l--~~n~~~~~~---~~~~~~~~~~L~~l~l~~n~~~~~~ 255 (277)
.+...+...++|++|++ ++|.++... +...+...++|++|++++|.++.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 35566777888999999 889887322 3345566788999999999887553
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=2.6e-09 Score=91.93 Aligned_cols=183 Identities=11% Similarity=0.116 Sum_probs=120.7
Q ss_pred ccccEEEccCCCCC--c-------CCccccccCCCcEEeccCCcCc----------ccCccccCcccCceeecccccccc
Q psy3567 77 AVLRTLDISQNKIS--K-------FPLDLASYQLLKSLTFDQNKIE----------SLPKDIGTLEKLENVSGNCNLIKE 137 (277)
Q Consensus 77 ~~L~~L~l~~~~i~--~-------~~~~~~~l~~L~~L~l~~~~i~----------~~~~~~~~l~~L~~L~l~~n~~~~ 137 (277)
..++.|.+..+... . +..+...+++|+.|.+...... .+...+..++.|+.|.++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 45777877765533 1 1223556889999998765332 233456778999999998774234
Q ss_pred cchhhhcCCCCCEEEccCCCCccC-ccccC--CCCCCCEEEccC--CC------CcccCchhc--cc-eeeEEEccCCcc
Q psy3567 138 LPLSFSKLHNLKHLSLSQNQLNKF-PTVLF--NLQHLDVLDLSF--NR------IESIPDGIG--KM-KVIEMNLNKNQI 203 (277)
Q Consensus 138 l~~~~~~l~~L~~L~l~~n~l~~~-~~~l~--~~~~L~~L~l~~--n~------l~~l~~~~~--~~-~l~~L~l~~n~l 203 (277)
++. + .+++|++|++..+.+..- ...+. .+++|++|+++. +. +..+...+. .. +|++|++.+|.+
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 443 3 378999999998887621 12332 689999999853 11 222222221 23 599999999998
Q ss_pred Cc-CCcCc---cCCCCCCEEEcCCCccccC---ccCccccCCCCccEEEcCCCeeeecccccccc
Q psy3567 204 CH-ISPDI---SECVRLKILRLEENCLAIN---AIPTCILTSSNVCTLNVEGNLFEMKAFQQLDG 261 (277)
Q Consensus 204 ~~-l~~~l---~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~ 261 (277)
+. .+..+ ..+++|++|+|+.|.++.. .++..+..+++|+.|+++.|.++.+..+.+..
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 72 22222 3578999999999998732 23444456799999999999998766555443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=5.7e-09 Score=81.28 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=48.0
Q ss_pred hHhhhccCccCEEEeecC-CCCc-----CChhHHHhhccccEEEccCCCCCc-----CCccccccCCCcEEeccCCcCcc
Q psy3567 46 KRHFETAKKTGVINLSHQ-GFKE-----FPDEMNELKAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKIES 114 (277)
Q Consensus 46 ~~~l~~~~~L~~L~l~~~-~i~~-----~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~i~~ 114 (277)
...+...+.|++|++++| .+.. +...+... ++|++|++++|++.. +...+...+.|++|++++|.|..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 356677778888888887 7762 22222222 566667776666652 23334444556666666665542
Q ss_pred -----cCccccCcccCceeec--cccccc
Q psy3567 115 -----LPKDIGTLEKLENVSG--NCNLIK 136 (277)
Q Consensus 115 -----~~~~~~~l~~L~~L~l--~~n~~~ 136 (277)
+...+...+.|++|++ ++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2333444444444444 444443
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=1e-05 Score=70.22 Aligned_cols=83 Identities=14% Similarity=0.347 Sum_probs=52.1
Q ss_pred cCCCCCCCEEEccCCCCcccCchhc-cc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCcc-CccccCCCC
Q psy3567 165 LFNLQHLDVLDLSFNRIESIPDGIG-KM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAI-PTCILTSSN 240 (277)
Q Consensus 165 l~~~~~L~~L~l~~n~l~~l~~~~~-~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~ 240 (277)
+..+..|+.+.+. +.++.++...+ .+ +|+++.+..+ ++.+.. +|..|.+|+.+.+..+ ++ .+ ..+|.++++
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~--~I~~~aF~~C~~ 358 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT--KIPESAFSNCTA 358 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC--BCCGGGGTTCTT
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC--EEhHhHhhCCCC
Confidence 3345566666654 34444544432 22 4777877653 666655 4778888888888654 43 33 356778888
Q ss_pred ccEEEcCCCeee
Q psy3567 241 VCTLNVEGNLFE 252 (277)
Q Consensus 241 L~~l~l~~n~~~ 252 (277)
|+.+++.++...
T Consensus 359 L~~i~~~~~~~~ 370 (394)
T 4gt6_A 359 LNNIEYSGSRSQ 370 (394)
T ss_dssp CCEEEESSCHHH
T ss_pred CCEEEECCceee
Confidence 888888887543
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=1.1e-05 Score=70.06 Aligned_cols=193 Identities=14% Similarity=0.179 Sum_probs=111.9
Q ss_pred HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcCcccCc--------
Q psy3567 47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLPK-------- 117 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-------- 117 (277)
.+|..|++|+.+.+.++ +..++...+..+.+|+.+.+..+ +..++. .|.++..|+.+.+..+... +..
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence 67899999999999765 45677777776688999888765 555544 4777777777766554321 111
Q ss_pred ---------------cccCcccCceeecccccccccchhhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEccCCCC
Q psy3567 118 ---------------DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRI 181 (277)
Q Consensus 118 ---------------~~~~l~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~l 181 (277)
.+..+..++.+.+..+...--...|.....++.+...... ++ ..+..+.+|+.+.+..+ +
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-C
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-c
Confidence 2223333333333322211111223444444444333221 22 23345667777777543 4
Q ss_pred cccCchh-ccc-eeeEEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCC
Q psy3567 182 ESIPDGI-GKM-KVIEMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249 (277)
Q Consensus 182 ~~l~~~~-~~~-~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 249 (277)
+.++... ... +|+.+++.+ .++.+.. +|..|.+|+.+++..+ ++ ..-..+|..+++|+++++..+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred ceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 5554432 233 477777754 3677764 4778888888888765 43 122456778888888887654
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=2.3e-05 Score=68.01 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=73.7
Q ss_pred HhhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCCc-cccccCCCcEEeccCCcC-------------
Q psy3567 47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKI------------- 112 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~i------------- 112 (277)
.+|.+|.+|+.+.+.. .++.+.+..|..+.+|+.+++..+ +..++. .|..+..|+.+.+..+-.
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 6788899999999864 477888777777788999988654 555544 466777776655543210
Q ss_pred --------ccc-CccccCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCccCc-cccCCCCCCCEEEcc
Q psy3567 113 --------ESL-PKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLS 177 (277)
Q Consensus 113 --------~~~-~~~~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~ 177 (277)
..+ ..+|..+.+|+.+.+..+. ..++ ..|..+.+|+.+.+..+ +..++ ..+..+..|+.+.+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 011 1235556666666664332 2333 24566666666666543 33332 223344445544443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=1.2e-06 Score=71.82 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=27.6
Q ss_pred ccccEEEccCCCCCcCC---ccccccCCCcEEeccCCcCcccCccccCcc--cCceeeccccccc
Q psy3567 77 AVLRTLDISQNKISKFP---LDLASYQLLKSLTFDQNKIESLPKDIGTLE--KLENVSGNCNLIK 136 (277)
Q Consensus 77 ~~L~~L~l~~~~i~~~~---~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~--~L~~L~l~~n~~~ 136 (277)
++|+.|++++|++..++ ..+..+++|+.|++++|.+..+. .+..+. +|++|++++|.+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 45555555555555332 23345555555555555555431 122222 4444555444443
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=0.00014 Score=62.95 Aligned_cols=125 Identities=17% Similarity=0.252 Sum_probs=78.1
Q ss_pred ccCcccCceeecccccccccc-hhhhcCCCCCEEEccCCCCccCcc-ccCCCCCCCEEEccCCCCcccCch-hccc-eee
Q psy3567 119 IGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVI 194 (277)
Q Consensus 119 ~~~l~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~-~~~~-~l~ 194 (277)
|..+..|+.+.+..+.. .+. ..|..+..|+.+.+. +.+..++. .+..+.+|+.+.+..+ ++.+... +..+ .|+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 44555566665543322 222 346777788888775 34666654 4557899999999764 6666544 3344 599
Q ss_pred EEEccCCccCcCCc-CccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCCCee
Q psy3567 195 EMNLNKNQICHISP-DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251 (277)
Q Consensus 195 ~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~~ 251 (277)
++.+..+ ++.+.. +|..|++|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC----------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCCCE
Confidence 9998654 888876 4889999999999988654 24566778899888877644
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=1.1e-05 Score=66.02 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=36.7
Q ss_pred CCCCCEEEccCCCCcccC---chhccc-eeeEEEccCCccCcCCcCccCCC--CCCEEEcCCCccccCccCc-------c
Q psy3567 168 LQHLDVLDLSFNRIESIP---DGIGKM-KVIEMNLNKNQICHISPDISECV--RLKILRLEENCLAINAIPT-------C 234 (277)
Q Consensus 168 ~~~L~~L~l~~n~l~~l~---~~~~~~-~l~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~~~~~~-------~ 234 (277)
+++|++|++++|.++.++ ..+..+ .|+.|++++|+|+.+. .+..++ +|++|+|++|++. +.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~-~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC-DTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG-GGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc-cccCcchhHHHHH
Confidence 445555555555554322 222222 2555555555555442 122222 6777777777765 34431 2
Q ss_pred ccCCCCccEE
Q psy3567 235 ILTSSNVCTL 244 (277)
Q Consensus 235 ~~~~~~L~~l 244 (277)
+..+++|+.|
T Consensus 247 l~~~P~L~~L 256 (267)
T 3rw6_A 247 RERFPKLLRL 256 (267)
T ss_dssp HHHCTTCCEE
T ss_pred HHHCcccCeE
Confidence 4456666655
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.76 E-value=1.7e-05 Score=61.73 Aligned_cols=111 Identities=11% Similarity=0.163 Sum_probs=67.0
Q ss_pred hcCCCCCEEEccCC-CCc-----cCccccCCCCCCCEEEccCCCCc-----ccCchhccc-eeeEEEccCCccC-----c
Q psy3567 143 SKLHNLKHLSLSQN-QLN-----KFPTVLFNLQHLDVLDLSFNRIE-----SIPDGIGKM-KVIEMNLNKNQIC-----H 205 (277)
Q Consensus 143 ~~l~~L~~L~l~~n-~l~-----~~~~~l~~~~~L~~L~l~~n~l~-----~l~~~~~~~-~l~~L~l~~n~l~-----~ 205 (277)
..-+.|++|+++++ .+. .+...+...+.|+.|++++|.++ .+...+... .+++|+++.|+|+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666664 554 23444555566777777777766 122222222 3777777777776 3
Q ss_pred CCcCccCCCCCCEEEcCCC---ccccC---ccCccccCCCCccEEEcCCCeeee
Q psy3567 206 ISPDISECVRLKILRLEEN---CLAIN---AIPTCILTSSNVCTLNVEGNLFEM 253 (277)
Q Consensus 206 l~~~l~~~~~L~~L~l~~n---~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~ 253 (277)
+...+...+.|++|+|++| .+... .+...+...+.|++|+++.|....
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 4555666778888888765 33311 233456667888999988776554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.69 E-value=0.0023 Score=54.89 Aligned_cols=79 Identities=16% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCCCCCEEEccCCCCcccCchh-ccc-eeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccccCcc-CccccCCCCcc
Q psy3567 167 NLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAI-PTCILTSSNVC 242 (277)
Q Consensus 167 ~~~~L~~L~l~~n~l~~l~~~~-~~~-~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~ 242 (277)
.+.+|+.+.+..+ ++.++... ..+ .|+++.+.++.++.++.. |..|.+|+.+.+..+ ++ .+ ..+|.++++|+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK--TIQVYAFKNCKALS 336 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc--EEHHHHhhCCCCCC
Confidence 3445555555332 33333332 222 477777777777777653 677777777777544 33 22 34566777777
Q ss_pred EEEcCCC
Q psy3567 243 TLNVEGN 249 (277)
Q Consensus 243 ~l~l~~n 249 (277)
++.+..+
T Consensus 337 ~i~ip~~ 343 (379)
T 4h09_A 337 TISYPKS 343 (379)
T ss_dssp CCCCCTT
T ss_pred EEEECCc
Confidence 7776554
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=4.7e-05 Score=59.22 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=34.3
Q ss_pred HhhhccCccCEEEeecC-CCC-----cCChhHHHhhccccEEEccCCCCC-----cCCccccccCCCcEEeccCCcCc
Q psy3567 47 RHFETAKKTGVINLSHQ-GFK-----EFPDEMNELKAVLRTLDISQNKIS-----KFPLDLASYQLLKSLTFDQNKIE 113 (277)
Q Consensus 47 ~~l~~~~~L~~L~l~~~-~i~-----~~~~~~~~~~~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~i~ 113 (277)
..+..-+.|+.|+++++ .|. .+.+.+... ..|+.|++++|++. .+...+..-..|+.|+++.|.|.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44455667777777764 555 122222222 55666666666655 22223333455555555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.31 E-value=0.00019 Score=54.74 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=42.8
Q ss_pred CCCcEEeccCCcCccc-CccccCcccCceeeccccc-cccc-chhhhcC----CCCCEEEccCCC-CccC-ccccCCCCC
Q psy3567 100 QLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNL-IKEL-PLSFSKL----HNLKHLSLSQNQ-LNKF-PTVLFNLQH 170 (277)
Q Consensus 100 ~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~n~-~~~l-~~~~~~l----~~L~~L~l~~n~-l~~~-~~~l~~~~~ 170 (277)
..|++|+++++.|+.. -..+..+++|++|++++|. +..- -..++.+ ++|++|++++|. ++.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3466666666655432 2334556666666666554 3211 0123332 357777776663 5421 123445677
Q ss_pred CCEEEccCC-CCc
Q psy3567 171 LDVLDLSFN-RIE 182 (277)
Q Consensus 171 L~~L~l~~n-~l~ 182 (277)
|++|++++| .++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 777777776 344
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.20 E-value=0.00081 Score=48.67 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=29.9
Q ss_pred EEEccCCCCc--ccCchhccceeeEEEccCCccCcCCcC-ccCCCCCCEEEcCCCccc
Q psy3567 173 VLDLSFNRIE--SIPDGIGKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLA 227 (277)
Q Consensus 173 ~L~l~~n~l~--~l~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~ 227 (277)
.++-++++++ .+|..+.. .+++|+|++|+|+.++.. |..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~-~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPV-DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCT-TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCc-CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 55543221 255666666666666554 445556666666666554
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.19 E-value=0.006 Score=52.21 Aligned_cols=58 Identities=7% Similarity=0.038 Sum_probs=27.1
Q ss_pred hhhccCccCEEEeecCCCCcCChhHHHhhccccEEEccCCCCCcCC-ccccccCCCcEEeccC
Q psy3567 48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQ 109 (277)
Q Consensus 48 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~ 109 (277)
+|..+ .|+.+.+..+ +..+....+.. .++....+..+ +..+. ..|.....++.+.+..
T Consensus 109 aF~~~-~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 109 VFQGT-DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred eeccC-CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhccccccccccccc
Confidence 34443 5677776543 33444444444 34555554432 33332 2344555555555443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00046 Score=49.98 Aligned_cols=55 Identities=15% Similarity=0.344 Sum_probs=42.9
Q ss_pred CEEEeecCCCC--cCChhHHHhhccccEEEccCCCCCcCCcc-ccccCCCcEEeccCCcCc
Q psy3567 56 GVINLSHQGFK--EFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIE 113 (277)
Q Consensus 56 ~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~i~ 113 (277)
..++.+++.++ .+|.. ++.++++|+|++|+|+.+|.. |..+++|++|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888888 88864 336788888888888888764 677888888888888764
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.16 E-value=0.00024 Score=54.23 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCCCEEEccCCCCccC-ccccCCCCCCCEEEccCC-CCccc-Cchhccc-----eeeEEEccCCc-cCcCC-cCccCCCC
Q psy3567 146 HNLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFN-RIESI-PDGIGKM-----KVIEMNLNKNQ-ICHIS-PDISECVR 215 (277)
Q Consensus 146 ~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n-~l~~l-~~~~~~~-----~l~~L~l~~n~-l~~l~-~~l~~~~~ 215 (277)
.+|++||++++.++.. -..+..+++|++|++++| .+++- -..+... .|++|++++|. ||.-. ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3577777777766532 134456777888888777 46521 1112221 36666666653 55111 12445666
Q ss_pred CCEEEcCCCc
Q psy3567 216 LKILRLEENC 225 (277)
Q Consensus 216 L~~L~l~~n~ 225 (277)
|++|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6777766664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.07 E-value=30 Score=22.95 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=15.6
Q ss_pred ccCCCCCCEEEcCCCccccCccCccccCCCCccEEEcCC
Q psy3567 210 ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG 248 (277)
Q Consensus 210 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 248 (277)
|..|.+|+.+.+-.+ ++ ..-..+|..|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 444555555554332 11 01123444455555554444
Done!