RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3567
(277 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 73.8 bits (181), Expect = 5e-15
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
++L + + P + LK+ L+ LD+S NKI P L + LK+L N + LP
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP 179
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
K + L L N+ + N I +LP L L+ L LS N + + + L NL++L L+L
Sbjct: 180 KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL 239
Query: 177 SFNRIESIPDGIGKMKVIE-MNLNKNQICHISP 208
S N++E +P+ IG + +E ++L+ NQI IS
Sbjct: 240 SNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272
Score = 53.0 bits (127), Expect = 6e-08
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 4/172 (2%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
L++S N + P L+ L L+ +++ L L ++ N N ++
Sbjct: 50 LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109
Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTVLFNL-QHLDVLDLSFNRIESIPDGIGKMKVIEM-N 197
+L NL L L N + P ++ L +L LDLS N+IES+P + + ++ +
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLD 169
Query: 198 LNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
L+ N + + +S L L L N I+ +P I S + L++ N
Sbjct: 170 LSFNDLSDLPKLLSNLSNLNNLDLSGN--KISDLPPEIELLSALEELDLSNN 219
Score = 48.0 bits (114), Expect = 2e-06
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQ 169
N + LP + L L+ +S + + + L L L L+ N+L + L L
Sbjct: 57 NTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELT 116
Query: 170 HLDVLDLSFNRIESIPDGIGKMK--VIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227
+L LDL N I IP IG +K + E++L+ N+I + + LK L L N
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--D 174
Query: 228 INAIPTCILTSSNVCTLNVEGNLFEM 253
++ +P + SN+ L++ GN
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISD 200
Score = 45.3 bits (107), Expect = 2e-05
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
+LS + P E+ L A L LD+S N I + L++ + L L NK+E LP+
Sbjct: 192 DLSGNKISDLPPEIELLSA-LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES 250
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
IG L LE + + N I + S L NL+ L LS N L+ ++ L L L L+
Sbjct: 251 IGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 51.8 bits (124), Expect = 2e-07
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 33/214 (15%)
Query: 67 EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNK-IESLPKDIGTLEK 124
E P+++ + L+ LD+ N + K P L + L+ LT N+ + +P+++G ++
Sbjct: 155 EIPNDIGSFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213
Query: 125 LE-------NVSGNC------------------NLIKELPLSFSKLHNLKHLSLSQNQLN 159
L+ N+SG NL +P S L NL++L L QN+L+
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273
Query: 160 -KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIE-MNLNKNQIC-HISPDISECVR 215
P +F+LQ L LDLS N + IP+ + +++ +E ++L N I ++ R
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333
Query: 216 LKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
L++L+L N + IP + +N+ L++ N
Sbjct: 334 LQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTN 366
Score = 50.6 bits (121), Expect = 4e-07
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 65 FKEFPDEMNELKAVLRTLDISQNKISK-FPLDLASYQLLKSLTFDQNKIES-LPKDIGTL 122
F PD + L LD+S+N+ S P L S L L +NK+ +P ++ +
Sbjct: 465 FGGLPDSFGSKR--LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522
Query: 123 EKLENV--SGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFN 179
+KL ++ S N L ++P SFS++ L L LSQNQL+ + P L N++ L +++S N
Sbjct: 523 KKLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581
Score = 47.5 bits (113), Expect = 4e-06
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI-ESLPKDIGTLEKLE--NVSGNCNLI 135
L+ L +++NK D + L++L +N+ ++P+ +G+L +L +S N L
Sbjct: 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLS 512
Query: 136 KELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMK- 192
E+P S L L LS NQL+ + P + L LDLS N++ IP +G ++
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572
Query: 193 VIEMNLNKN 201
++++N++ N
Sbjct: 573 LVQVNISHN 581
Score = 44.1 bits (104), Expect = 5e-05
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 40/246 (16%)
Query: 67 EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEK 124
E P E+ L + L LD+ N ++ P L + + L+ L QNK+ +P I +L+K
Sbjct: 227 EIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285
Query: 125 LENVSGNCN-LIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE 182
L ++ + N L E+P +L NL+ L L N K P L +L L VL L N+
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345
Query: 183 -SIPDGIGK---MKVIEMNLNK------NQIC-----------------HISPDISECVR 215
IP +GK + V++++ N +C I + C
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405
Query: 216 LKILRLEENCLA------INAIPTCIL--TSSNVCTLNVEGNLFEMKAFQQLDGYNNYMD 267
L+ +RL++N + +P S+N + ++M + Q L N
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465
Query: 268 SELQRS 273
L S
Sbjct: 466 GGLPDS 471
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 48.7 bits (116), Expect = 1e-06
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 138 LPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIE 195
+P SKL +L+ ++LS N + P L ++ L+VLDLS+N SIP+ +G++ +
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 196 -MNLNKN 201
+NLN N
Sbjct: 494 ILNLNGN 500
Score = 41.7 bits (98), Expect = 3e-04
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 115 LPKDIGTLEKLENVSGNCNLIK-ELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLD 172
+P DI L L++++ + N I+ +P S + +L+ L LS N N P L L L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 173 VLDLSFNRIES-IPDGIGKMKV--IEMNLNKNQ-ICHISPDISEC 213
+L+L+ N + +P +G + N N +C I P + C
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRAC 537
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 39.8 bits (94), Expect = 5e-05
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 124 KLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRI 181
L+++ + N + +P +F L NLK L LS N L F L L LDLS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 35.2 bits (82), Expect = 0.003
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG 187
NLK L LS N+L P F L +L VLDLS N + SI
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42
Score = 30.2 bits (69), Expect = 0.17
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 23/81 (28%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
L++LD+S N+++ P LK L N + S+ +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE------------------- 42
Query: 138 LPLSFSKLHNLKHLSLSQNQL 158
+FS L +L+ L LS N L
Sbjct: 43 ---AFSGLPSLRSLDLSGNNL 60
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
NL+ L LS NQ+ P L NL +L+ LDLS N+I +
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 29.8 bits (68), Expect = 0.16
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
L TLD+S N+I+ P L++ L++L NKI L
Sbjct: 3 LETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 28.6 bits (65), Expect = 0.38
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 124 KLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP 162
LE + + N I +LP S L NL+ L LS N++
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 40.8 bits (95), Expect = 5e-04
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+ LS E P+ L + L++LD+ NKIS P +L + L+ L+ N I +LP
Sbjct: 245 EMELSINRITELPER---LPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP 299
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
+ + NV N + LP + LK L +N L P L L VLD+
Sbjct: 300 AHLPSGITHLNVQSNS--LTALPETLPP--GLKTLEAGENALTSLPASL--PPELQVLDV 353
Query: 177 SFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA 227
S N+I +P+ + + +++++N + ++ ++ L+I++ N L
Sbjct: 354 SKNQITVLPETLPPT-ITTLDVSRNALTNLPENLPAA--LQIMQASRNNLV 401
Score = 34.3 bits (78), Expect = 0.063
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
Query: 66 KEFPDE--MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLE 123
KE P + N +AV R D +N ++ L + L T +P+ I TL
Sbjct: 155 KEAPAKEAANREEAVQRMRDCLKNNKTELRLKI-----LGLTTIPA----CIPEQITTL- 204
Query: 124 KLENVSGNCNLIKELPLSFSKLH-NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
L+N N +K LP L N+K L + NQL P L + + ++LS NRI
Sbjct: 205 ILDN-----NELKSLP---ENLQGNIKTLYANSNQLTSIPATLPDT--IQEMELSINRIT 254
Query: 183 SIPD 186
+P+
Sbjct: 255 ELPE 258
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 38.7 bits (90), Expect = 0.003
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 69 PDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV 128
P+ + L LR L + + P + L+K L +K+E L + +L L N+
Sbjct: 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVK-LQMQGSKLEKLWDGVHSLTGLRNI 639
Query: 129 S--GNCNLIKELPLSFSKLHNLKHLSLSQ-NQLNKFPTVLFNLQHLDVLDLSF-NRIESI 184
G+ NL KE+P S NL+ L LS + L + P+ + L L+ LD+S +E +
Sbjct: 640 DLRGSKNL-KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697
Query: 185 PDGIGKMKVIEMNLNKNQICHISPDIS 211
P GI + +NL+ PDIS
Sbjct: 698 PTGINLKSLYRLNLSGCSRLKSFPDIS 724
Score = 38.3 bits (89), Expect = 0.004
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 48/198 (24%)
Query: 64 GFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIG--- 120
K FPD + + LD+ + I +FP +L + L L + K E L + +
Sbjct: 716 RLKSFPD----ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT 770
Query: 121 --------TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQ-NQLNKFPTVLFNLQHL 171
+L +L +S +L+ ELP S LH L+HL + L PT + NL+ L
Sbjct: 771 PLMTMLSPSLTRL-FLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL 827
Query: 172 DVLDLS-FNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA 230
+ LDLS +R+ + PD IS +IS+ L L I
Sbjct: 828 ESLDLSGCSRLRTFPD-------------------ISTNISD------LNLSRT--GIEE 860
Query: 231 IPTCILTSSNVCTLNVEG 248
+P I SN+ L++ G
Sbjct: 861 VPWWIEKFSNLSFLDMNG 878
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 38.2 bits (88), Expect = 0.004
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
L+ L+ N++ SLP L KL + + LP L+ LS+S NQL
Sbjct: 304 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLP------SGLQELSVSDNQLASL 357
Query: 162 PTV---LFNL--------------QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQIC 204
PT+ L+ L L L +S NR+ S+P ++K E+ ++ N++
Sbjct: 358 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK--ELMVSGNRLT 415
Query: 205 HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQL 259
+ S + L + R + + +P ++ S+ T+N+EGN + Q L
Sbjct: 416 SLPMLPSGLLSLSVYRNQ-----LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465
Score = 36.3 bits (83), Expect = 0.017
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 56 GVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL 115
V+N+ G PD L A + TL I N ++ P A L++L N++ SL
Sbjct: 204 AVLNVGESGLTTLPDC---LPAHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSL 257
Query: 116 PKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLD 175
P L +L S + LP KL + NQL P + LQ L V D
Sbjct: 258 PVLPPGLLELSIFSNPLTHLPALPSGLCKLW------IFGNQLTSLPVLPPGLQELSVSD 311
Query: 176 LSFNRIESIPDGIGKM 191
+ ++P + K+
Sbjct: 312 NQLASLPALPSELCKL 327
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 30.0 bits (69), Expect = 0.070
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 168 LQHLDVLDLSFNRIESIPDGI 188
L +L LDLS N++ S+P G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 0.72
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 145 LHNLKHLSLSQNQLNKFPTVLFN 167
L NL+ L LS NQL+ P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 30.0 bits (69), Expect = 0.070
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 168 LQHLDVLDLSFNRIESIPDGI 188
L +L LDLS N++ S+P G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 0.72
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 145 LHNLKHLSLSQNQLNKFPTVLFN 167
L NL+ L LS NQL+ P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 29.6 bits (67), Expect = 1.8
Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 41/171 (23%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNL---- 134
L+ L ++ N + L L + L LEKL V G L
Sbjct: 110 LQELKLNNNGLGDRGLRL--------------LAKGLKDLPPALEKL--VLGRNRLEGAS 153
Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNKFPT-----VLFNLQHLDVLDLSFNRIESIPDGIG 189
+ L + +LK L+L+ N + L +L+VLDL+ N + +G
Sbjct: 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT--DEGAS 211
Query: 190 KM--------KVIEMNLNKNQI-----CHISPD-ISECVRLKILRLEENCL 226
+ + +NL N + ++ +S + L L L N +
Sbjct: 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262
Score = 28.1 bits (63), Expect = 4.7
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 20/130 (15%)
Query: 141 SFSKLHNLKHLSLSQNQLNKFPT-----VLFNLQH-LDVLDLSFNRIESIP--------D 186
S + +L+ L L+ N L L +L L+ L L NR+E
Sbjct: 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162
Query: 187 GIGKMKVIEM---NLNKNQICHISPDISECVRLKILRLEENCLA-INAIPTCILTSSNVC 242
+K + + + I ++ + L++L L N L A +S
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222
Query: 243 --TLNVEGNL 250
LN+ N
Sbjct: 223 LEVLNLGDNN 232
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 29.1 bits (66), Expect = 2.8
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 16/49 (32%)
Query: 105 LTFDQNKIESLPKDIG---------------TLEKLENVSGNCNLIKEL 138
L FD N ESL D L L+ V G +L+ EL
Sbjct: 647 LAFDGN-WESLAGDYLFDPELQRAIHVDIRYILWALDKVYGADHLLDEL 694
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.1 bits (65), Expect = 2.9
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 22/90 (24%)
Query: 76 KAVLRTLDISQNKISKFP-----LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSG 130
K L + +N++ L S++ LK + QN I P+ + L
Sbjct: 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR--PEGVTML-------- 205
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNK 160
L H+L+ L L N
Sbjct: 206 -------AFLGLFYSHSLEVLDLQDNTFTL 228
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 25.6 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 170 HLDVLDLSFNRIESIPDGIGKM 191
+L+ LDLS N + S+P +G +
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Score = 24.1 bits (53), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 147 NLKHLSLSQNQLNKFPTVLFNL 168
NL+ L LS N L+ P L NL
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|133939 PHA00781, PHA00781, hypothetical protein.
Length = 59
Score = 26.2 bits (57), Expect = 4.8
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 84 ISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE 126
I+ K KFP+ Y+ L+S+ D + SL + IGTLE L+
Sbjct: 5 INLGKEKKFPITQELYERLESVIHDYDGEISLCEAIGTLELLK 47
>gnl|CDD|192367 pfam09758, FPL, Uncharacterized conserved protein. This entry
represents an N-terminal region of approximately 150
residues of a family of proteins of unknown function. It
contains a highly conserved FPL motif.
Length = 149
Score = 27.2 bits (61), Expect = 6.3
Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKL-HNLKHLS-----LSQNQLNKFPTVLFNLQHLD 172
+ T ++ + ++ + S L NL++ + LS N LN+ F+ +
Sbjct: 28 MSTFLRILTNLTPSEVKIQILQTVSMLIQNLQNETSLYYLLSNNHLNELIIHKFDFNDEE 87
Query: 173 VLDLSFNRIESI 184
++ + ++S+
Sbjct: 88 IVSYYISFLKSL 99
>gnl|CDD|182106 PRK09841, PRK09841, cryptic autophosphorylating protein tyrosine
kinase Etk; Provisional.
Length = 726
Score = 28.0 bits (62), Expect = 7.1
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 50 ETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ 109
E +K++G++ L+ G ++ + + R L+ N + + + Q +SL F Q
Sbjct: 222 ERSKESGMLELTMTG--------DDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQ 273
Query: 110 NKIESLPKDIGTLEKLENV 128
++ + ++ E+ NV
Sbjct: 274 RQLPEVRSELDQAEEKLNV 292
>gnl|CDD|224828 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone
shutdown protein) [Function unknown].
Length = 388
Score = 27.7 bits (62), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 205 HISPDISECVRLKILRLEENCLAI 228
H+S D E VR IL + + +A+
Sbjct: 21 HVSKDSVEEVRRIILEEKPDAVAV 44
>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase
(NAD(+)). Members of this protein family are the
eukaryotic enzyme, glycerol-3-phosphate dehydrogenase
(NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is
defined as sn-glycerol 3-phosphate + NAD(+) = glycerone
phosphate + NADH. Note the very similar reactions of
enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to
families of proteins in the bacteria.
Length = 342
Score = 27.3 bits (61), Expect = 9.8
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
+ T +++ + N N E PL F ++ + + L +L
Sbjct: 300 VATAKEVHELLKNKNKDDEFPL-FEAVYQILYEGLPPKKLP 339
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,596,138
Number of extensions: 1263443
Number of successful extensions: 1040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 64
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.8 bits)