RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3567
(277 letters)
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 114 bits (287), Expect = 1e-31
Identities = 15/158 (9%), Positives = 45/158 (28%), Gaps = 3/158 (1%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L ++++ + L ++ L +G L + + + L
Sbjct: 6 KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRL 65
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMN 197
+ +L L +L + + L L + + + +G++ ++
Sbjct: 66 KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQ 125
Query: 198 LNKNQICHISPDISECVRLKILRLEENCLAINAIPTCI 235
++ + + E + L + T
Sbjct: 126 EIYQELTQLKAAVGELPDQSKQQQIYQELT--DLKTAF 161
Score = 104 bits (262), Expect = 6e-28
Identities = 15/155 (9%), Positives = 43/155 (27%), Gaps = 2/155 (1%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
+Q + EL L ++++ + L ++ L
Sbjct: 10 QEIYQELTRLKAAVGELPE-KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAA 68
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
+G L + + + L + +L L +L + + L L +
Sbjct: 69 VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIY 128
Query: 179 NRIESIPDGIGKM-KVIEMNLNKNQICHISPDISE 212
+ + +G++ + ++ +
Sbjct: 129 QELTQLKAAVGELPDQSKQQQIYQELTDLKTAFER 163
Score = 101 bits (254), Expect = 8e-27
Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 1/134 (0%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
+Q + EL L ++++ + L ++ L
Sbjct: 33 QEIYQELTRLKAAVGELPE-KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAA 91
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
+G L + + + EL + +L L +L + + L +
Sbjct: 92 VGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIY 151
Query: 179 NRIESIPDGIGKMK 192
+ + ++
Sbjct: 152 QELTDLKTAFERLG 165
Score = 85.6 bits (213), Expect = 8e-21
Identities = 13/131 (9%), Positives = 34/131 (25%), Gaps = 3/131 (2%)
Query: 120 GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFN 179
G L + + + L + +L L +L + + L L +
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 180 RIESIPDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238
+ + +G++ ++ + + E L+ L + +
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL--TELKAAVGEL 118
Query: 239 SNVCTLNVEGN 249
L
Sbjct: 119 PEKSKLQEIYQ 129
Score = 59.8 bits (146), Expect = 3e-11
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 1/89 (1%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
+Q + EL L ++++ + L ++ L
Sbjct: 79 QEIYQELTRLKAAVGELPE-KSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAA 137
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHN 147
+G L + +L +F +L +
Sbjct: 138 VGELPDQSKQQQIYQELTDLKTAFERLGH 166
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 110 bits (278), Expect = 8e-29
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 16/206 (7%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+ L +FPD+ L L+ + I + + P + + L++LT +N + +LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSH-LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143
Query: 117 KDIGTLEKLE--NVSGNCNLIKELP---------LSFSKLHNLKHLSLSQNQLNKFPTVL 165
I +L +L ++ C + ELP L NL+ L L + P +
Sbjct: 144 ASIASLNRLRELSIRA-CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202
Query: 166 FNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNL-NKNQICHISPDISECVRLKILRLEE 223
NLQ+L L + + + ++ I + + E++L + + P LK L L +
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL-K 261
Query: 224 NCLAINAIPTCILTSSNVCTLNVEGN 249
+C + +P I + + L++ G
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 107 bits (269), Expect = 1e-27
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 15/207 (7%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF-DQNKIESL 115
+ + G E PD M + L TL +++N + P +AS L+ L+ ++ L
Sbjct: 108 HMTIDAAGLMELPDTMQQFAG-LETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166
Query: 116 PKDIGTLEKLENVSG---------NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
P+ + + + G I+ LP S + L NLK L + + L+ +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226
Query: 167 NLQHLDVLDLS-FNRIESIPDGIGKMK-VIEMNL-NKNQICHISPDISECVRLKILRLEE 223
+L L+ LDL + + P G + + L + + + + DI +L+ L L
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL-R 285
Query: 224 NCLAINAIPTCILTSSNVCTLNVEGNL 250
C+ ++ +P+ I C + V +L
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHL 312
Score = 95.8 bits (239), Expect = 4e-23
Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 15/184 (8%)
Query: 79 LRTLDISQNKISKFP--LDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
+ + + L+ A+ +L + P L L++++ + +
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS-FNRIESIPDGIGKMKVI- 194
ELP + + L+ L+L++N L P + +L L L + + +P+ +
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 195 ---------EMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLN 245
+ L I + I+ LK L++ + L +A+ I + L+
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELD 235
Query: 246 VEGN 249
+ G
Sbjct: 236 LRGC 239
Score = 80.0 bits (198), Expect = 1e-17
Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF-DQNKIESLPK 117
L G + P + L+ L++L I + +S + L+ L + + P
Sbjct: 189 RLEWTGIRSLPASIANLQN-LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 118 DIGTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQN-QLNKFPTVLFNLQHLDVLD 175
G L+ + +C+ + LPL +L L+ L L L++ P+++ L ++
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
Query: 176 LSFNRIESIPD 186
+ + +
Sbjct: 308 VPPHLQAQLDQ 318
Score = 71.5 bits (176), Expect = 1e-14
Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 12/159 (7%)
Query: 98 SYQLLKSLTF----DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSL 153
+ + + ++ N + +N + +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYN---ADRNRWHSAWRQANSNNPQIETR 63
Query: 154 SQNQLNKFPTVLFNLQH--LDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPDI 210
+ L +L + L+L + PD ++ + M ++ + + +
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123
Query: 211 SECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
+ L+ L L N L A+P I + + + L++
Sbjct: 124 QQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRAC 160
Score = 56.1 bits (136), Expect = 2e-09
Identities = 13/142 (9%), Positives = 38/142 (26%), Gaps = 9/142 (6%)
Query: 112 IESLPKDIGTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH 170
+ S EN+ ++ L + + N +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYH---DVLSQWQRHYNADRNRWHSAWRQANSNN 57
Query: 171 LDVLDLSFNRIESIPDGIGKMKV---IEMNLNKNQICHISPDISECVRLKILRLEENCLA 227
+ + +++ D + + + L + L+ + ++ L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL- 116
Query: 228 INAIPTCILTSSNVCTLNVEGN 249
+P + + + TL + N
Sbjct: 117 -MELPDTMQQFAGLETLTLARN 137
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 105 bits (263), Expect = 6e-26
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
V+ ++ P+ L LD N++S P AS LK L D N++ LP
Sbjct: 84 VLEITQNALISLPELPASL----EYLDACDNRLSTLPELPAS---LKHLDVDNNQLTMLP 136
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
+ LE + N N + LP +L+ LS+ NQL P + +L+ LD +
Sbjct: 137 ELPALLEYI-NADNN--QLTMLP---ELPTSLEVLSVRNNQLTFLPELPESLEALD---V 187
Query: 177 SFNRIESIPDGIGKMK-----VIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
S N +ES+P + I +N+I HI +I + LE+N L
Sbjct: 188 STNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242
Score = 105 bits (263), Expect = 7e-26
Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 23/221 (10%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
L+ PD + + L+I+QN + P AS L+ L N++ +LP+
Sbjct: 65 QLNRLNLSSLPDNLPPQ---ITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPEL 118
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
+L+ L +V N + LP + L++++ NQL P + +L+ VL +
Sbjct: 119 PASLKHL-DVDNNQ--LTMLPELPA---LLEYINADNNQLTMLPELPTSLE---VLSVRN 169
Query: 179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLK----ILRLEENCLAINAIPTC 234
N++ +P+ ++ ++++ N + + + R EN + IP
Sbjct: 170 NQLTFLPELPESLE--ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT--HIPEN 225
Query: 235 ILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGL 275
IL+ CT+ +E N + + L D R
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266
Score = 77.7 bits (191), Expect = 2e-16
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 34/193 (17%)
Query: 81 TLDISQNKISKFPLDLASY----QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
+ + N IS D S + ++N+ SL K+ + + + N +
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLNLS 72
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV-----------------LDLSFN 179
LP + + L ++QN L P + +L++LD LD+ N
Sbjct: 73 SLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNN 130
Query: 180 RIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSS 239
++ +P+ ++ I N + NQ+ + + L++L + N L +P
Sbjct: 131 QLTMLPELPALLEYI--NADNNQLTMLPELPT---SLEVLSVRNNQL--TFLPELP---E 180
Query: 240 NVCTLNVEGNLFE 252
++ L+V NL E
Sbjct: 181 SLEALDVSTNLLE 193
Score = 71.5 bits (175), Expect = 2e-14
Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 25/185 (13%)
Query: 59 NLSHQGFKEFPDEM----------NELKAV------LRTLDISQNKISKFPLDLASYQLL 102
++ + P+ N+L + L L + N+++ P S L
Sbjct: 126 DVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPES---L 182
Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNL----IKELPLSFSKLHNLKHLSLSQNQL 158
++L N +ESLP E I +P + L + L N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242
Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
+ +L G+ + L + V
Sbjct: 243 SSRIR--ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300
Query: 219 LRLEE 223
E
Sbjct: 301 HAFEH 305
Score = 41.9 bits (98), Expect = 1e-04
Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLDVLDLSFNRIESIPDGIGKMKV 193
+ L + +L N ++ F + + + N S+ +
Sbjct: 3 IMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61
Query: 194 IEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
E+ LN+ + + ++ ++ +L + +N L ++P +++ L+ N
Sbjct: 62 SELQLNRLNLSSLPDNL--PPQITVLEITQNALI--SLPELP---ASLEYLDACDNRLS 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 100 bits (250), Expect = 5e-24
Identities = 55/245 (22%), Positives = 89/245 (36%), Gaps = 51/245 (20%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-----LDLASYQL---------L 102
+ +S P L L + P L + QL L
Sbjct: 85 TLEVSGNQLTSLPVLPPGLLE-LSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGL 143
Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP 162
+ L+ N++ SLP L KL N + LP+ S L+ LS+S NQL P
Sbjct: 144 QELSVSDNQLASLPALPSELCKL-WAYNNQ--LTSLPMLPS---GLQELSVSDNQLASLP 197
Query: 163 TVLFNLQHLDV-----------------LDLSFNRIESIPDGIGKMKVIEMNLNKNQICH 205
T+ L L L +S NR+ S+P ++K E+ ++ N++
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK--ELMVSGNRLTS 255
Query: 206 ISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE------MKAFQQL 259
+ S L L + N L +P ++ S+ T+N+EGN ++
Sbjct: 256 LPMLPS---GLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310
Query: 260 DGYNN 264
GY+
Sbjct: 311 PGYSG 315
Score = 92.6 bits (230), Expect = 2e-21
Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 44/234 (18%)
Query: 57 VINLSHQGFKEFPDEM-----------NELKAV------LRTLDISQNKISKFPLDLASY 99
V+N+ G PD + N L ++ LRTL++S N+++ P+
Sbjct: 44 VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPG- 102
Query: 100 QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
L L+ N + LP L KL + G N + LP+ L+ LS+S NQL
Sbjct: 103 --LLELSIFSNPLTHLPALPSGLCKL-WIFG--NQLTSLPVLPP---GLQELSVSDNQLA 154
Query: 160 KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
P + L L + N++ S+P ++ E++++ NQ+ + S L L
Sbjct: 155 SLPALPSELCKLWAYN---NQLTSLPMLPSGLQ--ELSVSDNQLASLPTLPS---ELYKL 206
Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLF-----EMKAFQQLDGYNNYMDS 268
N L ++P S + L V GN ++L N + S
Sbjct: 207 WAYNNRL--TSLPALP---SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 255
Score = 89.6 bits (222), Expect = 2e-20
Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 26/191 (13%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L++ ++ ++ P L + +L N + SLP L L VSGN + L
Sbjct: 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTL-EVSGNQ--LTSL 96
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
P+ L L S L P+ L L + N++ S+P ++ E+++
Sbjct: 97 PVLPPGLLELSIFSNPLTHLPALPS---GLCK---LWIFGNQLTSLPVLPPGLQ--ELSV 148
Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF-----EM 253
+ NQ+ + S L L N L ++P S + L+V N
Sbjct: 149 SDNQLASLPALPS---ELCKLWAYNNQL--TSLPMLP---SGLQELSVSDNQLASLPTLP 200
Query: 254 KAFQQLDGYNN 264
+L YNN
Sbjct: 201 SELYKLWAYNN 211
Score = 83.0 bits (205), Expect = 4e-18
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 13/192 (6%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
++S P +EL L N+++ P + LK L N++ SLP
Sbjct: 187 SVSDNQLASLPTLPSEL----YKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVL 239
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
L++L VSGN + LP+ L LS+ +NQL + P L +L ++L
Sbjct: 240 PSELKEL-MVSGN--RLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293
Query: 179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS 238
N + + + I S + L L + A +
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353
Query: 239 SNVCTLNVEGNL 250
E N
Sbjct: 354 DRWHMFGQEDNA 365
Score = 62.2 bits (151), Expect = 4e-11
Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLN 199
+ + L++ ++ L P L H+ L + N + S+P +++ + ++
Sbjct: 34 MRACLNNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTL--EVS 89
Query: 200 KNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF-----EMK 254
NQ+ + + L I L A+P+ +C L + GN
Sbjct: 90 GNQLTSLPVLPPGLLELSIFSNPLTHLP--ALPS------GLCKLWIFGNQLTSLPVLPP 141
Query: 255 AFQQLDGYNNYMDS 268
Q+L +N + S
Sbjct: 142 GLQELSVSDNQLAS 155
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 96.1 bits (239), Expect = 2e-22
Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 25/221 (11%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIES 114
+ L + +E P++ + L S NK+ P + + + S+ F NKI S
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658
Query: 115 LPKDIGT------LEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFP----- 162
++I V+ + N I++ P F+ + + LS N + P
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718
Query: 163 ---TVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIE-MNLNKNQICHISPDISECVRL 216
N L +DL FN++ S+ D + + M+++ N +L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778
Query: 217 KILRLEENCLAIN-----AIPTCILTSSNVCTLNVEGNLFE 252
K + A PT I T ++ L + N
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819
Score = 96.1 bits (239), Expect = 2e-22
Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 22/210 (10%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK 117
I + L L+ + + + + + + + E+
Sbjct: 430 IGNLTNRITFISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDY---AKQYENEEL 485
Query: 118 DIGTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQL----------NKFPTVLF 166
L+ L +V NC + +LP L L+ L+++ N+ +
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 167 NLQHLDVLDLSFNRIESIPD--GIGKMKVIE-MNLNKNQICHISPDISECVRLKILRLEE 223
+ + + +N +E P + KM + ++ N++ H+ V+L L+L+
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDY 604
Query: 224 NCLAINAIPTCILT-SSNVCTLNVEGNLFE 252
N I IP + V L N +
Sbjct: 605 N--QIEEIPEDFCAFTDQVEGLGFSHNKLK 632
Score = 93.0 bits (231), Expect = 2e-21
Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 21/211 (9%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESL 115
+ D+ + ++ + N + +FP + ++ L L NK+ L
Sbjct: 530 AAQLKADWTRLADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588
Query: 116 PKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF--NLQHLD 172
GT KL ++ + N I+E+P + ++ L S N+L P + ++ +
Sbjct: 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647
Query: 173 VLDLSFNRIESIPDGIGK-------MKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
+D S+N+I S I + + L+ N+I ++ + + + L N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 225 CL------AINAIPTCILTSSNVCTLNVEGN 249
+ ++ + + T+++ N
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Score = 88.0 bits (218), Expect = 1e-19
Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 57 VINLSHQGFKEFPDEMNELKAV-----LRTLDISQNKISKFPLDLASY-QLLKSLTFDQN 110
++ S+ ++ T+ +S N+I KFP +L + + ++ N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 111 KIESLPKD--------IGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNK 160
+ S+P++ L + N + L + L L ++ +S N +
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767
Query: 161 FPTVLFNLQHLDVLDLSFNRI-------ESIPDGIGKMKVIEM-NLNKNQICHISPDISE 212
FPT N L + R P GI + + N I + ++
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827
Query: 213 CVRLKILRLEENCL 226
+L IL + +N
Sbjct: 828 --QLYILDIADNPN 839
Score = 86.1 bits (213), Expect = 4e-19
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 20/169 (11%)
Query: 57 VINLSHQGFKEFPDEMNELKAV-------LRTLDISQNKISKFPLDLASYQL--LKSLTF 107
I LS+ P+ + K L T+D+ NK++ D + L L ++
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760
Query: 108 DQNKIESLPKDIGTLEKLENVS-------GNCNLIKELPLSFSKLHNLKHLSLSQNQLNK 160
N S P +L+ ++++ P + +L L + N + K
Sbjct: 761 SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820
Query: 161 FPTVLFNLQHLDVLDLSFNRIESIPDG--IGKMKVIEMNLNKNQICHIS 207
L L +LD++ N SI ++ L ++ I
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
Score = 71.4 bits (175), Expect = 3e-14
Identities = 21/206 (10%), Positives = 59/206 (28%), Gaps = 14/206 (6%)
Query: 57 VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ------ 109
++L+ G K PD + +L L+ L + + +L ++ ++
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 110 ---NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
+ + + L++ +K + + N++ +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445
Query: 167 NLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
L L ++ + + + + + S L + L
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPN 503
Query: 227 AINAIPTCILTSSNVCTLNVEGNLFE 252
+ +P + + +LN+ N
Sbjct: 504 -MTQLPDFLYDLPELQSLNIACNRGI 528
Score = 45.3 bits (107), Expect = 1e-05
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 3/138 (2%)
Query: 96 LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLS 154
A + ++L + S + N + ++ + P + + LSL+
Sbjct: 272 KALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLA 331
Query: 155 QNQL-NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISEC 213
+ P + L L VL + G ++ ++++ + I +
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP-DMSEERKHRIRMHYKKM 390
Query: 214 VRLKILRLEENCLAINAI 231
RL + L +AI
Sbjct: 391 FLDYDQRLNLSDLLQDAI 408
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 92.7 bits (231), Expect = 4e-22
Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 13/197 (6%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIKE 137
+ TL + N IS+ Q K++ NKI L G +++ + N I
Sbjct: 101 IETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 138 LPLS--FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE 195
+ + + L+HL+L N + + L LDLS N++ + +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVT 217
Query: 196 M-NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTL------NVEG 248
+L N++ I + L+ L N + + V T+ + G
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
Query: 249 NLFEMKAFQQLDGYNNY 265
E L Y Y
Sbjct: 278 QNEEECTVPTLGHYGAY 294
Score = 81.2 bits (201), Expect = 6e-18
Identities = 39/239 (16%), Positives = 87/239 (36%), Gaps = 36/239 (15%)
Query: 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTF 107
+ + + ++ K+ + + ++ LD+S N +S+ LA + L+ L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF- 166
N + D+ +L L + N N ++EL +++ L + N +++
Sbjct: 66 SSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRGQ 120
Query: 167 NLQHLD---------------------VLDLSFNRIESIPDG--IGKMKVIEM-NLNKNQ 202
+++ LDL N I+++ +E NL N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 203 ICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM--KAFQQL 259
I + + +LK L L N + + +++ V +++ N + KA +
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236
Score = 75.8 bits (187), Expect = 3e-16
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 5/153 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
++ LD+ N+I + L+ L N I + + KL+ + + N +
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLA 204
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
+ F + +SL N+L L Q+L+ DL N K +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264
Query: 197 -NLNKNQICHISPDISE-CVRLKILRLEENCLA 227
+ K + ++ E C + C
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
Score = 73.5 bits (181), Expect = 3e-15
Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 3/149 (2%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L++ N I + LK+L NK+ + + + + +S N + +
Sbjct: 171 LEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ NL+H L N + F ++ V ++ ++ + + +
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 199 NKNQICHISPDISECVRLKILRLEENCLA 227
+ C D+ +++ L +
Sbjct: 290 HYGAYC--CEDLPAPFADRLIALGHHHHH 316
Score = 64.6 bits (158), Expect = 3e-12
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 8/127 (6%)
Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHL 171
++ + + + + +K+ S N+K L LS N L++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
++L+LS N + D + ++LN N + ++ ++ L N I+ +
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNN--ISRV 114
Query: 232 PTCILTS 238
Sbjct: 115 SCSRGQG 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 90.7 bits (225), Expect = 6e-21
Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 11/174 (6%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
LRTLD++ N + + S +++L N I + + +N+ N I L
Sbjct: 82 LRTLDLNNNYVQELL-VGPS---IETLHAANNNISRVS--CSRGQGKKNIYLANNKITML 135
Query: 139 P-LSFSKLHNLKHLSLSQNQLNKFPTVLF--NLQHLDVLDLSFNRIESIPDGIGKMKVIE 195
L +++L L N+++ + L+ L+L +N I + + K+
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195
Query: 196 MNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
++L+ N++ + P+ + + L N + I + S N+ ++ GN
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGN 247
Score = 76.0 bits (187), Expect = 8e-16
Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 12/183 (6%)
Query: 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKF-PLDLASYQLLKSLTF 107
+ + + ++ K+ + + ++ LD+S N +S+ DLA + L+ L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFN 167
N + D+ +L L + N N ++EL +++ L + N +++
Sbjct: 66 SSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG- 119
Query: 168 LQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD--ISECVRLKILRLEE 223
Q + L+ N+I + D G +V ++L N+I ++ + L+ L L+
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 224 NCL 226
N +
Sbjct: 179 NFI 181
Score = 61.8 bits (150), Expect = 5e-11
Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 10/178 (5%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+NL + + ++ K L+TLD+S NK++ + S + ++ NK+ +
Sbjct: 173 HLNLQYNFIYDVKGQVVFAK--LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLD 175
K + + LE+ N L N + ++++ + K +
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 176 LSFNRIESIPDGI-------GKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
E +P + + ++ ++ + + R + + +
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348
Score = 59.5 bits (144), Expect = 3e-10
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 8/127 (6%)
Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHL 171
++ + + + + +K+ S N+K L LS N L++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
++L+LS N + D + ++LN N + ++ ++ L N I+ +
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNN--ISRV 114
Query: 232 PTCILTS 238
Sbjct: 115 SCSRGQG 121
Score = 52.2 bits (125), Expect = 7e-08
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG-IGKMK 192
I E+ + + K ++ + L + L + ++ LDLS N + I +
Sbjct: 2 IHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 193 VIEM-NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
+E+ NL+ N + D+ L+ L L N + +L ++ TL+ N
Sbjct: 59 KLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANN 109
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 87.9 bits (218), Expect = 6e-20
Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 14/183 (7%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS----GNCN 133
L L + + ++ P + L+ L L I ++ + ++L + +
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWP 211
Query: 134 LIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GK 190
+ + + NL LS++ L P + +L +L L+LS+N I +I +
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 191 MKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEG 248
+++ E+ L Q+ + P L++L + N + + + S N+ TL ++
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN--QLTTLEESVFHSVGNLETLILDS 329
Query: 249 NLF 251
N
Sbjct: 330 NPL 332
Score = 80.9 bits (200), Expect = 2e-17
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL 115
+ + F P+ + R LD+ +N+I D AS+ L+ L ++N + ++
Sbjct: 15 AVLCHRKRFVAVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 116 PKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVL 174
P +F+ L NL+ L L N+L P +F L +L L
Sbjct: 72 E----------------------PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 175 DLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAI 231
D+S N+I + D + + + + N + +IS S L+ L LE+ + +I
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSI 167
Query: 232 PT 233
PT
Sbjct: 168 PT 169
Score = 53.6 bits (129), Expect = 2e-08
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQI 203
+ L L +N++ F + HL+ L+L+ N + ++ G + + L N++
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 204 CHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLF---EMKAFQQ 258
I + + L L + EN I + + N+ +L V N +AF
Sbjct: 93 KLIPLGVFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 259 L 259
L
Sbjct: 151 L 151
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 87.0 bits (216), Expect = 8e-20
Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L ++S N +S + +A ++ L N I + +L + N + +
Sbjct: 188 LFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT 241
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKMKVIEM- 196
L + LS N+L K F +Q L+ L +S NR+ ++ + +++
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
+L+ N + H+ + + RL+ L L+ N +I + + L + N
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDHN--SIVTLKLSTH--HTLKNLTLSHN 349
Score = 84.7 bits (210), Expect = 5e-19
Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 28/205 (13%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
+ + + + K P L S++ ++ L + +IE + ++ + N I+
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 137 ELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MK 192
LP F + L L L +N L+ P +F N L L +S N +E I D +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 193 VIEMNLNKNQICHISPD-----------------ISECVRLKILRLEENCLAINAIPTCI 235
+ + L+ N++ H+ ++ + ++ L N +IN + +
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN--SINVVRGPV 224
Query: 236 LTSSNVCTLNVEGN-LFEMKAFQQL 259
+ L ++ N L +
Sbjct: 225 N--VELTILKLQHNNLTDTAWLLNY 247
Score = 78.9 bits (195), Expect = 5e-17
Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 85 SQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELP-LSF 142
Q + F + + K +TF + + LP + + ++E ++ N I+E+ +F
Sbjct: 30 MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 89
Query: 143 SKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLN 199
+ H ++ L + N + P +F N+ L VL L N + S+P GI K+ ++++
Sbjct: 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149
Query: 200 KNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN----LFEMK 254
N + I D L+ L+L N + + ++ ++ NV N L
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSN--RLTHVDLSLIP--SLFHANVSYNLLSTLAIPI 205
Query: 255 AFQQLDGYNNYMDS 268
A ++LD +N ++
Sbjct: 206 AVEELDASHNSINV 219
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 10/130 (7%)
Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
+ + + + + + L + ++ + + +P + +V
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 195 EMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFE 252
+NLN QI I + ++ L + N AI +P + + + L +E N
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 253 M---KAFQQL 259
F
Sbjct: 131 SLPRGIFHNT 140
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 87.9 bits (217), Expect = 9e-20
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 5/153 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ L ++ NK++ L + + L L D+NKI+ L + L+KL+++S N I ++
Sbjct: 67 VTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI 124
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
L L+ L L N++ TVL L LD L L N+I I G K+ + L
Sbjct: 125 N-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182
Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAI 231
+KN I + ++ L +L L I
Sbjct: 183 SKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 214
Score = 84.0 bits (207), Expect = 2e-18
Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
++ + ++ + + + + I+S+ + I L + + N N + ++
Sbjct: 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 80
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L NL L L +N++ + L +L+ L L L N I I + ++ + L
Sbjct: 81 K-PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 138
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
N+I I+ +S +L L LE+N
Sbjct: 139 GNNKITDITV-LSRLTKLDTLSLEDN 163
Score = 80.9 bits (199), Expect = 2e-17
Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 11/201 (5%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ + + + I + + L + NK+ + K + L+ L + + N IK+L
Sbjct: 45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL 102
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
S L LK LSL N ++ L +L L+ L L N+I I K+ ++L
Sbjct: 103 S-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 160
Query: 199 NKNQICHISPDISECVRLKILRLEENCLA-INAIP-----TCILTSSNVCTLNVEGNLFE 252
NQI I P ++ +L+ L L +N ++ + A+ + S C +
Sbjct: 161 EDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 219
Query: 253 MKAFQQLDGYNNYMDSELQRS 273
+ + + + + S
Sbjct: 220 LVVPNTVKNTDGSLVTPEIIS 240
Score = 53.6 bits (128), Expect = 3e-08
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 125 LENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI 184
+ IK++ +L + + T L +D + + + I+S+
Sbjct: 1 MGETITVSTPIKQIF-PDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58
Query: 185 PDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILRLEEN 224
GI + + LN N++ I P ++ L L L+EN
Sbjct: 59 -QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 87.4 bits (217), Expect = 1e-19
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 23/209 (11%)
Query: 65 FKEFPDEMNELKAVLRTLDISQ-NKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLE 123
+K + + LK L +++ ++K P L + ++ + N+ S + +
Sbjct: 238 YKTEDLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 124 KLENVSGNCNLIK-----------ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
L + + + S K+ L L NQL + L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356
Query: 173 VLDLSFNRIESIPDGIGKM--KVIEMNLNKNQICHISP--DISECVRLKILRLEENCL-- 226
L+L++N+I IP +V ++ N++ +I D + + N +
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 227 ----AINAIPTCILTSSNVCTLNVEGNLF 251
+ + NV ++N+ N
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Score = 80.9 bits (200), Expect = 2e-17
Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 22/186 (11%)
Query: 60 LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD 118
+ + F + + ++++S N+ISKFP + ++ L S+ N + +PK+
Sbjct: 417 VDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 119 --------IGTLEKLENVSGNCNLIKELP--LSFSKLHNLKHLSLSQNQLNKFPTVLFNL 168
L ++ N + +L + L L + LS N +KFPT N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS 535
Query: 169 QHLDVLDLSFNRIES-------IPDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILR 220
L + R P+GI + + N I ++ I+ + +L
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP--NISVLD 593
Query: 221 LEENCL 226
+++N
Sbjct: 594 IKDNPN 599
Score = 72.0 bits (177), Expect = 2e-14
Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 35/196 (17%)
Query: 79 LRTLDISQNKISKF-PLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE--NVSGN---- 131
L I+ + K + N I + K + L KL + +
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220
Query: 132 --------------CNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDL 176
K L + L +L + + K PT L L + ++++
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280
Query: 177 SFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCIL 236
+ NR S D +++I+ + N L + T +
Sbjct: 281 ACNRGISGEQLKD-------------DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327
Query: 237 TSSNVCTLNVEGNLFE 252
+ L N E
Sbjct: 328 KMKKLGMLECLYNQLE 343
Score = 69.3 bits (170), Expect = 1e-13
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 34/160 (21%)
Query: 60 LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPK 117
+ K+ + L ++D+ NK++K D + L L + N P
Sbjct: 472 IPKNSLKDENENFKNTYL-LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530
Query: 118 DIGTLEKLE--------NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF-PTVLFNL 168
L+ + GN ++E P + +L L + N + K + N+
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI 589
Query: 169 QHLDV---------------------LDLSFNRIESIPDG 187
LD+ L +++ + I
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629
Score = 63.1 bits (154), Expect = 2e-11
Identities = 21/206 (10%), Positives = 55/206 (26%), Gaps = 18/206 (8%)
Query: 58 INLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFP----------LDLASYQLLKSLT 106
++L G PD + +L L L + + + +
Sbjct: 86 LSLEGFGASGRVPDAIGQLTE-LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144
Query: 107 FDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
+ + ++ P++ + +++ + K + S + N + +
Sbjct: 145 YQKTFVDYDPRED-FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM 203
Query: 167 NLQHLDVLDLSFNRIE-SIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENC 225
L L + + + + E Q L + +
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYA---QQYKTEDLKWDNLKDLTDVEVYNCP 260
Query: 226 LAINAIPTCILTSSNVCTLNVEGNLF 251
+ +PT + + +NV N
Sbjct: 261 N-LTKLPTFLKALPEMQLINVACNRG 285
Score = 48.5 bits (116), Expect = 1e-06
Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 19/151 (12%)
Query: 132 CNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-----SIP 185
+ +S + + LSL + + P + L L+VL L + + P
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 186 DGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAIN----AIPTCILTSSNV 241
GI E K ++ + + R L ++C+ + +I +
Sbjct: 127 KGISANMSDE-QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185
Query: 242 CTLNVEGN--------LFEMKAFQQLDGYNN 264
+ N + + +Q N+
Sbjct: 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 85.7 bits (213), Expect = 2e-19
Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ L ++ K++ + L+ L + N+I + + L KL N+ N I ++
Sbjct: 46 ITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI 103
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMN 197
+ L NL+ L L+++ ++ L NL + L+L N S + M + +
Sbjct: 104 S-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161
Query: 198 LNKNQICHISPDISECVRLKILRLEEN 224
+ ++++ ++P I+ L L L N
Sbjct: 162 VTESKVKDVTP-IANLTDLYSLSLNYN 187
Score = 81.8 bits (203), Expect = 4e-18
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L+++ N+I+ L++ L +L NKI + + L L + N + I ++
Sbjct: 68 LEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI 125
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-N 197
+ L + L+L N + L N+ L+ L ++ ++++ + I + + +
Sbjct: 126 S-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLS 183
Query: 198 LNKNQICHISPDISECVRLKILRLEENCL 226
LN NQI ISP ++ L N +
Sbjct: 184 LNYNQIEDISP-LASLTSLHYFTAYVNQI 211
Score = 78.7 bits (195), Expect = 5e-17
Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ + ++ + + + L K+ S+ I L LE ++ N N I ++
Sbjct: 24 GIRAVLQKASVTD-VVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI 81
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
S L L +L + N++ L NL +L L L+ + I I K+ +NL
Sbjct: 82 S-PLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNL 139
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
N +S L L + E+
Sbjct: 140 GANHNLSDLSPLSNMTGLNYLTVTES 165
Score = 76.8 bits (190), Expect = 2e-16
Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 28/191 (14%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP----------LDLASYQL------- 101
NL ++ + L L ++++K+ L L Q+
Sbjct: 138 NLGANHNLSDLSPLSNMTG-LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLA 196
Query: 102 ----LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQ 157
L T N+I + + + +L ++ N I +L + L L L + NQ
Sbjct: 197 SLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQ 254
Query: 158 LNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQICHISPD-ISECVR 215
++ + +L L +L++ N+I I + + + + LN NQ+ + + I
Sbjct: 255 ISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312
Query: 216 LKILRLEENCL 226
L L L +N +
Sbjct: 313 LTTLFLSQNHI 323
Score = 65.3 bits (160), Expect = 2e-12
Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
+L I + D L + + ++ + +L ++ L ++ ++
Sbjct: 2 AATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI 59
Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRL 221
+ L +L+ L+L+ N+I I +K+ + + N+I IS + L+ L L
Sbjct: 60 QG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYL 117
Query: 222 EENCL 226
E+ +
Sbjct: 118 NEDNI 122
Score = 61.8 bits (151), Expect = 3e-11
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L+I N+IS + LK L N+I + + L +L ++ N N +
Sbjct: 245 LTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNE 302
Query: 139 PLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
+ L NL L LSQN + L +L +D D + I+
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346
Score = 47.5 bits (114), Expect = 2e-06
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKE 137
L+ L++ N+IS L + L SL + N++ + + IG L L + + N I +
Sbjct: 267 LKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325
Query: 138 LPLSFSKLHNLKHLSLSQNQLNK 160
+ + L + + + K
Sbjct: 326 IR-PLASLSKMDSADFANQVIKK 347
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 85.8 bits (213), Expect = 3e-19
Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 33/189 (17%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+ L++ G P+ L+ +L S N +++ P S LKSL D N +++L
Sbjct: 75 ELELNNLGLSSLPELPPHLE----SLVASCNSLTELPELPQS---LKSLLVDNNNLKALS 127
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV--- 173
LE L VS N +++LP LK + + N L K P + +L+ +
Sbjct: 128 DLPPLLEYL-GVSNNQ--LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 183
Query: 174 ----------------LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLK 217
+ N ++ +PD ++ + N + + P++ L
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNNILEEL-PELQNLPFLT 240
Query: 218 ILRLEENCL 226
+ + N L
Sbjct: 241 TIYADNNLL 249
Score = 79.7 bits (197), Expect = 4e-17
Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 42/223 (18%)
Query: 60 LSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-------LDLASYQL-------LKSL 105
E P E +K+ + ++ + ++A +L L
Sbjct: 18 RHSSNLTEMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76
Query: 106 TFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL 165
+ + SLP+ LE L S CN + ELP L +L + + L+ P +L
Sbjct: 77 ELNNLGLSSLPELPPHLESL-VAS--CNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 133
Query: 166 ----------------FNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPD 209
N L ++D+ N ++ +PD ++ + NQ+ + P+
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE--FIAAGNNQLEEL-PE 190
Query: 210 ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
+ L + + N ++ +P ++ ++ N+ E
Sbjct: 191 LQNLPFLTAIYADNN--SLKKLPDLP---LSLESIVAGNNILE 228
Score = 79.7 bits (197), Expect = 4e-17
Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 36/213 (16%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+I++ + K+ PD L + N++ + P +L + L ++ D N ++ LP
Sbjct: 157 IIDVDNNSLKKLPDLPPSL----EFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP 211
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV--- 173
+LE + N +++ELP L L + N L P + +L+ L+V
Sbjct: 212 DLPLSLESI-VAGNN--ILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 267
Query: 174 --------------LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL 219
LD+S N + + + +N + N+I + L+ L
Sbjct: 268 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLY--YLNASSNEIRSLCDLPP---SLEEL 322
Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
+ N L +P + L N
Sbjct: 323 NVSNNKL--IELPALP---PRLERLIASFNHLA 350
Score = 78.1 bits (193), Expect = 2e-16
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 27/194 (13%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK 117
+N+ + P+ L LD+S+N S + L L N+I SL
Sbjct: 262 LNVRDNYLTDLPELPQSL----TFLDVSENIFSGLSELPPN---LYYLNASSNEIRSLCD 314
Query: 118 DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
+LE+L NVS N + ELP + L+ L S N L + P + NL+ L +
Sbjct: 315 LPPSLEEL-NVSNNK--LIELP---ALPPRLERLIASFNHLAEVPELPQNLK---QLHVE 365
Query: 178 FNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILT 237
+N + PD ++ + MN + ++ LK L +E N L P
Sbjct: 366 YNPLREFPDIPESVEDLRMNSHLAEV------PELPQNLKQLHVETNPL--REFPDIP-- 415
Query: 238 SSNVCTLNVEGNLF 251
+V L +
Sbjct: 416 -ESVEDLRMNSERV 428
Score = 70.0 bits (172), Expect = 8e-14
Identities = 30/199 (15%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 68 FPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTL---- 122
F + N L+ + +++ P++ + + ++ E + P G
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 123 ---------EKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV 173
+ + N + LP +L+ L S N L + P + +L+ L V
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLV 118
Query: 174 LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPT 233
+ + + +P + + ++ NQ+ + P++ LKI+ ++ N ++ +P
Sbjct: 119 DNNNLKALSDLPPLL-----EYLGVSNNQLEKL-PELQNSSFLKIIDVDNN--SLKKLPD 170
Query: 234 CILTSSNVCTLNVEGNLFE 252
++ + N E
Sbjct: 171 LP---PSLEFIAAGNNQLE 186
Score = 68.1 bits (167), Expect = 3e-13
Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 19/151 (12%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+N+S+ E P L+ L S N +++ P + LK L + N + P
Sbjct: 321 ELNVSNNKLIELPALPPRLE----RLIASFNHLAEVPELPQN---LKQLHVEYNPLREFP 373
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDL 176
++E L + + E+P NLK L + N L +FP + +++ L +
Sbjct: 374 DIPESVEDLRM----NSHLAEVP---ELPQNLKQLHVETNPLREFPDIPESVED---LRM 423
Query: 177 SFNRIESIPDGIGKM--KVIEMNLNKNQICH 205
+ R+ + + K+ + + H
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 85.2 bits (211), Expect = 6e-19
Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 18/214 (8%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY-QLLKSLTFDQNKIESL 115
+++ + L ++ + + +K+ P + + + L+ L +N +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349
Query: 116 ----PKDIGTLEKLE--NVSGNC-NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNL 168
G L+ +S N +++ L NL L +S+N + P
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409
Query: 169 QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAI 228
+ + L+LS I + I + + ++++ N + S + RL+ L + N +
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQ-TLEVLDVSNNNLDSFSLFLP---RLQELYISRNK--L 463
Query: 229 NAIPTCILTSSNVCTLNVEGNL---FEMKAFQQL 259
+P L + + + N F +L
Sbjct: 464 KTLPDASL-FPVLLVMKISRNQLKSVPDGIFDRL 496
Score = 75.5 bits (186), Expect = 1e-15
Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 12/189 (6%)
Query: 48 HFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLT 106
F+ G+ + + + +R L I Q + + + +K +T
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 107 FDQNKIESLPKDIGT-LEKLE--NVSGNC--NLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
+ +K+ +P L+ LE ++S N + +L+ L LSQN L
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 162 PTVLF---NLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLK 217
L++L LD+S N +PD K+ +NL+ I + I + L+
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ--TLE 434
Query: 218 ILRLEENCL 226
+L + N L
Sbjct: 435 VLDVSNNNL 443
Score = 71.3 bits (175), Expect = 3e-14
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 32/177 (18%)
Query: 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE 113
+GV + + F P L A +++LD+S NKI+ DL + L+ L ++I
Sbjct: 7 SGVCDGRSRSFTSIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLD 172
++ D +F L +L+HL LS N L+ + F L L
Sbjct: 64 TIEGD----------------------AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101
Query: 173 VLDLSFNRIESIPDG--IGKM-KVIEMNL-NKNQICHISP-DISECVRLKILRLEEN 224
L+L N +++ + + + + N I D + L L ++
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Score = 63.6 bits (155), Expect = 1e-11
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+++S F PD + +R L++S I + L+ L N ++S
Sbjct: 391 SLDISRNTFHPMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQT--LEVLDVSNNNLDSFS 447
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLD 175
+ L++L +S N +K LP S L + +S+NQL P +F L L +
Sbjct: 448 LFLPRLQEL-YISRN--KLKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Query: 176 LSFNRI 181
L N
Sbjct: 504 LHTNPW 509
Score = 56.7 bits (137), Expect = 2e-09
Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 36/203 (17%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L ++S+ D + L ++ + S + T+ L +L
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLD---------------------- 172
+S L +K +++ +++ P +L+ LD
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 173 --VLDLSFNRIESIPDGIGKM----KVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
L LS N + S+ + + +++++N + +++ L L
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-- 420
Query: 227 AINAIPTCILTSSNVCTLNVEGN 249
I + TCI + V L+V N
Sbjct: 421 GIRVVKTCIPQTLEV--LDVSNN 441
Score = 56.3 bits (136), Expect = 3e-09
Identities = 31/233 (13%), Positives = 87/233 (37%), Gaps = 29/233 (12%)
Query: 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP------------LDL 96
++ + + L + ++ + +R L++ +++F +
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227
Query: 97 ASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP---------LSFSKLHN 147
+++ N++ L + I L ++E N + + L +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
Query: 148 LKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQIC 204
++ L + Q L + ++ L+ + + + +++ +P + + ++L++N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347
Query: 205 HISPDISEC----VRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGNLFE 252
S C L+ L L +N L ++ +LT N+ +L++ N F
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400
Score = 54.7 bits (132), Expect = 9e-09
Identities = 31/256 (12%), Positives = 77/256 (30%), Gaps = 53/256 (20%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-------------LDLASYQL-- 101
++LS + L+ L++ N L + + +
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137
Query: 102 ------------LKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKELP-LSFSKLHN 147
L L + + + ++ + +++ + + L + L +
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 148 LKHLSLSQNQLNKFPTVLF------------NLQHLDVLDLSFNRIESIPDGIGKMKVIE 195
+++L L L +F + + D SFN + + I ++ +E
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 196 M-NLNKNQICHISPD----ISECVRLKILRLEENCLAINAI----PTCILTSSNVCTLNV 246
+ N + +P +SE +++ + + + + T V + V
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 247 EGN---LFEMKAFQQL 259
E + L Q L
Sbjct: 318 ENSKVFLVPCSFSQHL 333
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 85.1 bits (211), Expect = 6e-19
Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 17/194 (8%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSG----NCNL 134
LR LD+S N + + L+ L F + ++ + + LE + N
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTNT 436
Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNKF--PTVLFNLQHLDVLDLSFNRIESIPDGI--GK 190
+ F L +L L ++ N V N +L LDLS ++E I G+
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 191 MKVIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEG 248
++ +N++ N + + ++ L L N I + ++ N+
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN--RIETSKGILQHFPKSLAFFNLTN 554
Query: 249 NLF----EMKAFQQ 258
N E + F Q
Sbjct: 555 NSVACICEHQKFLQ 568
Score = 84.7 bits (210), Expect = 9e-19
Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 32/227 (14%)
Query: 57 VINLSHQGFKEFPDE-----------MNELKAV----------LRTLDISQNKISKFPLD 95
Q + PD+ N LK + L+ LD+S+ +I
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 96 -LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLS 152
L +L N I+S L LEN+ + L +L LK L+
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134
Query: 153 LSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGI------GKMKVIEMNLNKNQIC 204
++ N ++ K P NL +L +DLS+N I++I + ++++ N I
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194
Query: 205 HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251
I + ++L L L N + N + TC+ + + + F
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Score = 78.9 bits (195), Expect = 8e-17
Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 14/204 (6%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESL 115
++L+ K D K ++L I + ++ +FP LDL LKSLT NK
Sbjct: 289 AMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSIS 343
Query: 116 PKDIGTLEKLE--NVSGNC-NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
K + L L ++S N + S ++L+HL LS N L+ L
Sbjct: 344 FKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402
Query: 173 VLDLSFNRIESIPDGI---GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAI 228
LD + ++ + + K++ ++++ I L L++ N
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462
Query: 229 NAIPTCILTSSNVCTLNVEGNLFE 252
N + ++N+ L++ E
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLE 486
Score = 65.8 bits (161), Expect = 2e-12
Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 33/179 (18%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP--LDLASYQLLKSLTFDQNKIES 114
++LS G L+ L+ LD + + + S + L L +
Sbjct: 380 HLDLSFNGAIIMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 115 LPKDI-GTLEKLE--NVSGNC-----------------------NLIKELP-LSFSKLHN 147
I L L ++GN ++++ F LH
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 148 LKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MKVIEMNLNKNQI 203
L+ L++S N L + + L L LD SFNRIE+ + + NL N +
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Score = 63.9 bits (156), Expect = 1e-11
Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 18/188 (9%)
Query: 57 VINLSHQGFKEFPDE----MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
++LS+ + + E V +LD+S N I L LT N
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216
Query: 113 -----ESLPKDIGTLEKLENVSG---NCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF-- 161
++ +++ L + G + ++ S L ++ N F
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276
Query: 162 -PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILR 220
L ++ + L+ I+ + D K +++ + Q+ + LK L
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLT 334
Query: 221 LEENCLAI 228
L N +I
Sbjct: 335 LTMNKGSI 342
Score = 44.6 bits (106), Expect = 2e-05
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 6/133 (4%)
Query: 57 VINLSHQGFKEF--PDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIE 113
+ ++ FK+ + L LD+S+ ++ + + L+ L N +
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTN-LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 114 SLPKD-IGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHL 171
L L L + + N I+ + +L +L+ N + LQ +
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570
Query: 172 DVLDLSFNRIESI 184
+E +
Sbjct: 571 KEQKQFLVNVEQM 583
Score = 39.6 bits (93), Expect = 8e-04
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQI 203
+L+K P + + +DLSFN ++ + ++ ++L++ +I
Sbjct: 11 VPNITYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68
Query: 204 CHISPD-ISECVRLKILRLEENCL 226
I L L L N +
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGNPI 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 83.6 bits (207), Expect = 2e-18
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKIESLP 116
+ + +E PD ++ R L++ +N+I + L+ L +N I ++
Sbjct: 48 VICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104
Query: 117 KDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDV 173
L L + N + +P +F L LK L L N + P+ F + L
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164
Query: 174 LDLS-FNRIESIPDGI--GKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA 230
LDL R+ I +G G + +NL + I P+++ ++L L L N ++A
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGN--HLSA 221
Query: 231 IPTCILTS-SNVCTLNVEGNL---FEMKAFQQL 259
I ++ L + + E AF L
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254
Score = 79.0 bits (195), Expect = 7e-17
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 12/192 (6%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L L +S+N I + L +L N++ ++P L KL+ + N I+
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 137 ELPL-SFSKLHNLKHLSLSQ-NQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKMKV 193
+P +F+++ +L+ L L + +L+ F L +L L+L+ + IP+ +K+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209
Query: 194 IEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLF 251
E++L+ N + I P + L+ L + ++ I I + ++ +N+ N
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS--QIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 252 EM---KAFQQLD 260
+ F L
Sbjct: 268 TLLPHDLFTPLH 279
Score = 67.9 bits (166), Expect = 4e-13
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 12/169 (7%)
Query: 99 YQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQN 156
+ + + +P I L N+ N I+ + SF L +L+ L LS+N
Sbjct: 42 SNQFSKVICVRKNLREVPDGISTNTRLL-NLHEN--QIQIIKVNSFKHLRHLEILQLSRN 98
Query: 157 QLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SE 212
+ F L +L+ L+L NR+ +IP+G K+ E+ L N I I +
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 213 CVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLF-EMKAFQQL 259
L+ L L ++ I SN+ LN+ E+ L
Sbjct: 159 IPSLRRLDL-GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206
Score = 48.2 bits (115), Expect = 1e-06
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIK 136
L LD+S N +S L+ L Q++I+ + ++ L+ L ++ N +
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 137 ELPLS-FSKLHNLKHLSLSQNQLN 159
LP F+ LH+L+ + L N N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPWN 292
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 83.8 bits (207), Expect = 2e-18
Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L ++S N +S + +A ++ L N I + +L + N + +
Sbjct: 194 LFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT 247
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGKMKVIEM- 196
L + LS N+L K F +Q L+ L +S NR+ ++ + +++
Sbjct: 248 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306
Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
+L+ N + H+ + + RL+ L L+ N +I + + L + N
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLYLDHN--SIVTLKLSTH--HTLKNLTLSHN 355
Score = 83.1 bits (205), Expect = 4e-18
Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 28/205 (13%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
+ + + + K P L S++ ++ L + +IE + ++ + N I+
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 137 ELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MK 192
LP F + L L L +N L+ P +F N L L +S N +E I D +
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 193 VIEMNLNKNQICHISPD-----------------ISECVRLKILRLEENCLAINAIPTCI 235
+ + L+ N++ H+ ++ + ++ L N +IN + +
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN--SINVVRGPV 230
Query: 236 LTSSNVCTLNVEGN-LFEMKAFQQL 259
+ L ++ N L +
Sbjct: 231 N--VELTILKLQHNNLTDTAWLLNY 253
Score = 78.4 bits (193), Expect = 1e-16
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 3/149 (2%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
L L + N ++ L +Y L + N++E + +++LE + + N +
Sbjct: 234 LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKMKVIEM 196
L L + LK L LS N L L+ L L N I ++ +K + +
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352
Query: 197 NLNKNQICHISPDISECVRLKILRLEENC 225
+ N + R + +++C
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQHC 381
Score = 56.5 bits (136), Expect = 3e-09
Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKE-LPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
Q + + + ++ +V + L+N K ++ + + K P L
Sbjct: 12 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71
Query: 167 -NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLE 222
+ + +++L+L+ +IE I + ++ + N I ++ P + L +L LE
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131
Query: 223 ENCLAINAIPTCILTS-SNVCTLNVEGN 249
N ++++P I + + TL++ N
Sbjct: 132 RN--DLSSLPRGIFHNTPKLTTLSMSNN 157
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 83.2 bits (206), Expect = 3e-18
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L+ LD+S+ +I S L +L N I+SL L L+ + +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 137 ELP-LSFSKLHNLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGIG---- 189
L L LK L+++ N + K P NL +L+ LDLS N+I+SI
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 190 --KMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVE 247
+ + ++L+ N + I P + +RL L L N ++N + TCI + + +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 248 GNLFE 252
F
Sbjct: 234 LGEFR 238
Score = 79.4 bits (196), Expect = 6e-17
Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 12/208 (5%)
Query: 49 FETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFD 108
F +L + D + L++ K +FP + LK LTF
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTL--KLKSLKRLTFT 333
Query: 109 QNKIESLPKDIGTLEKLE--NVSGNC-NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL 165
NK + ++ L LE ++S N + S +LK+L LS N + +
Sbjct: 334 SNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 166 FNLQHLDVLDLSFNRIESIPDGI---GKMKVIEMNLNKNQICHISPDI-SECVRLKILRL 221
L+ L+ LD + ++ + + +I ++++ I + L++L++
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 222 EENCLAINAIPTCILTSSNVCTLNVEGN 249
N N +P N+ L++
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 72.8 bits (179), Expect = 9e-15
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIES 114
++LS G L+ L LD + + + L L L
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 115 LPKDI-GTLEKLE--NVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQ 169
I L LE ++GN + + P F++L NL L LSQ QL + F +L
Sbjct: 436 AFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 170 HLDVLDLSFNRIESIPDGI 188
L VL+++ N+++S+PDGI
Sbjct: 495 SLQVLNMASNQLKSVPDGI 513
Score = 59.7 bits (145), Expect = 3e-10
Identities = 33/231 (14%), Positives = 66/231 (28%), Gaps = 38/231 (16%)
Query: 57 VINLSHQGFKEFPDE----MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
++LS + ++++ + +LD+S N ++ L LT N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 113 --ESLPKDIGTLEKLE------NVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF-- 161
+ I L LE N +++ S L NL L+ +
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 162 --PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHIS------------ 207
+ L ++ L IE + D + L +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 208 --------PDISECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN 249
+ L+ L L N L+ + +++ L++ N
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 82.0 bits (203), Expect = 3e-18
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
L L IS+ K++ P DL L L D NKI+++ + KL + N I+
Sbjct: 174 LNYLRISEAKLTGIPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 138 LP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-------- 188
+ S S L L+ L L N+L++ P L +L+ L V+ L N I +
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291
Query: 189 --GKMKVIEMNLNKNQICHISPDISECVR-LKILRLEEN 224
I + N + P CV ++
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 77.7 bits (192), Expect = 1e-16
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 12/166 (7%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIKE 137
LR + S + P +++ L N I L KD L+ L + N I +
Sbjct: 35 LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 138 L-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
+ +FS L L+ L +S+N L + P L L L + NRI +P G+ G +
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150
Query: 195 EMNLNKNQICH--ISPDISECVRLKILRLEENCLAINAIPTCILTS 238
+ + N + + P + ++L LR+ E + IP + +
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEA--KLTGIPKDLPET 194
Score = 48.1 bits (115), Expect = 1e-06
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-------GTLEKLENVSGN 131
LR L + NK+S+ P L +LL+ + N I + + +S
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302
Query: 132 CNLIKEL---PLSFSKLHNLKHLSLSQNQ 157
N + P +F + + + +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 82.8 bits (205), Expect = 5e-18
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 8/162 (4%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L LD+++ +I D S L +L N + + + + L+++ I
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 137 EL-PLSFSKLHNLKHLSLSQNQLNKFP-TVLFNLQHLDVLDLSFNRIESIPDGI----GK 190
+ + L+ L L N ++ F + L VLD N I + +
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIP 232
+ +NLN N I I P + + L +
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220
Score = 77.4 bits (191), Expect = 3e-16
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 15/187 (8%)
Query: 79 LRTLDISQNKISKFPLD---LASYQLLKSLTFDQNKIESLPKDI-GTLEKLE--NVSGNC 132
LR LD+S + I L + L+SL N+ SL + +LE +++
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESI----PDG 187
+K+ F LH LK L+LS + L+ LF L L L+L N +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 188 IGKMKVIEM-NLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTSSNVCTLN 245
+ + +E+ L+ + I + + + L N + + L+ LN
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN--RLTSSSIEALSHLKGIYLN 529
Query: 246 VEGNLFE 252
+ N
Sbjct: 530 LASNHIS 536
Score = 76.6 bits (189), Expect = 6e-16
Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 9/177 (5%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKEL 138
+T + +++ P L + + L F N + ++ L L + I +
Sbjct: 15 KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 139 -PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
+F H L L L+ N L + L L I SI + +
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 195 EMNLNKNQICHISPD-ISECVRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGN 249
+ L N I I +LK+L + N + ++ L + +LN+ GN
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189
Score = 73.5 bits (181), Expect = 5e-15
Identities = 34/204 (16%), Positives = 77/204 (37%), Gaps = 13/204 (6%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP---LDLASYQLLKSLTFDQNKIES 114
+NL+ + AV ++L+ + L ++ Q L TF+ E
Sbjct: 184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242
Query: 115 LPKDI---GTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH 170
+ + +E+++ + + +F L+ L L+ L++ P+ L L
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST 302
Query: 171 LDVLDLSFNRIESIPD----GIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
L L LS N+ E++ + + + N ++ + + L+ L L + +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 227 -AINAIPTCILTSSNVCTLNVEGN 249
+ + S++ +LN+ N
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 61.6 bits (150), Expect = 6e-11
Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 38/210 (18%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIK 136
L+ L Q IS L + + L+SL N I S+ EKL+ + N I
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166
Query: 137 EL-PLSFSKLHNLKH--LSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI------------ 181
L S L + L+L+ N + F+ L+ +
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226
Query: 182 ------------------ESIPDGIGKMKVIEMNLNKNQICHISPDI-SECVRLKILRLE 222
++ +G+ +M V +NL K+ +IS + L+ L L
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 223 ENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
++ +P+ ++ S + L + N FE
Sbjct: 287 AT--HLSELPSGLVGLSTLKKLVLSANKFE 314
Score = 60.0 bits (146), Expect = 2e-10
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD----IGTLEKLENVSGNCN 133
L+ L++S + + L+ L N + TL +LE + +
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486
Query: 134 LIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI 188
+ + +F+ L + H+ LS N+L + L+L+ N I I +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542
Score = 28.8 bits (65), Expect = 2.3
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 26/127 (20%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFD--QNKIES 114
++ LS ++ +D+S N+++ ++ + LK + + N I
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE--ALSHLKGIYLNLASNHISI 537
Query: 115 LPKDI-GTLEKLE--NVSGN-----CNL-------------IKELP-LSFSKLHNLKHLS 152
+ + L + N+ N C+ +++ L+ +
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVR 597
Query: 153 LSQNQLN 159
LS L+
Sbjct: 598 LSDVTLS 604
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 80.4 bits (199), Expect = 8e-18
Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 38/209 (18%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDIGTLEKLENVSGNCNLI 135
L L +S N +S S SL + N + ++ + LE+LE++ + +
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
Query: 136 KELPLS--FSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLD----------------- 172
K++ F L NL +L +S +F +L+ L
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 173 -----VLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
LDLS ++E + + +N++ N + L++L N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 225 CLAINAIPTCILTS--SNVCTLNVEGNLF 251
I L S++ LN+ N F
Sbjct: 234 --HIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 70.8 bits (174), Expect = 2e-14
Identities = 32/179 (17%), Positives = 70/179 (39%), Gaps = 12/179 (6%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKEL 138
+ + ++ P + S L + NK++SLP + L +L +S + N +
Sbjct: 10 TEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 139 PL---SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG---IGKMK 192
S +LK+L LS N + + L+ L+ LD + ++ + + +
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 193 VIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN 249
+I ++++ I + L++L++ N I T N+ L++
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC 185
Score = 40.4 bits (95), Expect = 4e-04
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L LD+SQ ++ + S L+ L N SL L L+ + + N I
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 137 ELPLS-FSKL-HNLKHLSLSQNQLN 159
+L L+L+QN
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 79.7 bits (197), Expect = 1e-17
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ L ++ NK++ LA+ + L L D+NK++ L + L+KL+++S N I ++
Sbjct: 70 VTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI 127
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
L L+ L L N++ TVL L LD L L N+I I G K+ + L
Sbjct: 128 N-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
+KN I + ++ L +L L
Sbjct: 186 SKNHISDLRA-LAGLKNLDVLELFSQ 210
Score = 73.2 bits (180), Expect = 2e-15
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
++ + ++ + + + + I+S+ + I L + + N N + ++
Sbjct: 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 83
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMN 197
+ L NL L L +N++ + L +L+ L L L N I I +G+ + ++ +
Sbjct: 84 K-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLY 140
Query: 198 LNKNQICHISPDISECVRLKILRLEEN 224
L N+I I+ +S +L L LE+N
Sbjct: 141 LGNNKITDITV-LSRLTKLDTLSLEDN 166
Score = 72.4 bits (178), Expect = 6e-15
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ + + + I + + L + NK+ + K + L+ L + + N +K+L
Sbjct: 48 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL 105
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
S L LK LSL N ++ L +L L+ L L N+I I K+ ++L
Sbjct: 106 S-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163
Query: 199 NKNQICHISPDISECVRLKILRLEENCL 226
NQI I P ++ +L+ L L +N +
Sbjct: 164 EDNQISDIVP-LAGLTKLQNLYLSKNHI 190
Score = 60.1 bits (146), Expect = 8e-11
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L++L + N IS L L+SL NKI + + L KL+ +S N I ++
Sbjct: 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 171
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L L++L LS+N ++ L L++LDVL+L + P V+ +
Sbjct: 172 V-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229
Query: 199 NKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCI 235
++P+ IS+ + ++ + + I
Sbjct: 230 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 267
Score = 44.3 bits (105), Expect = 2e-05
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
IK++ S +L + + T L +D + + + I+S+ GI
Sbjct: 10 VPTPIKQIF-SDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQY 66
Query: 191 MKVIEM-NLNKNQICHISPDISECVRLKILRLEEN 224
+ + LN N++ I P ++ L L L+EN
Sbjct: 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 80.8 bits (200), Expect = 2e-17
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKE 137
D S K+++ P DL + + L N++ L + +L ++ N I +
Sbjct: 6 HEVADCSHLKLTQVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 138 L-PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKV 193
L P KL LK L+L N+L++ F +L L L N I+ I + + +
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 194 IEMNLNKNQICHISPD-ISECVRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGNLF 251
I ++L+ N + + L+ L L N + A+ + I +S++ L + N
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 252 E 252
+
Sbjct: 184 K 184
Score = 72.0 bits (177), Expect = 2e-14
Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 14/184 (7%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIE 113
++LSH G L+ L +S NKI + SL N+I+
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Query: 114 SL-PKDIGTLEKLE--NVSGNC--NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-- 166
P + +L ++ + E ++++LSLS +QL+ F
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 167 -NLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQICHISPD-ISECVRLKILRLE 222
+L +LDLS+N + + + + ++ L N I H+ + ++ L L+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 223 ENCL 226
+
Sbjct: 305 RSFT 308
Score = 71.2 bits (175), Expect = 4e-14
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL--PKDIGTLEKLE--NVSGNCN 133
L L++++NKISK D + L+ L N+I ++ LE + +S N
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-K 441
Query: 134 LIKELPLSFSKLHNLKHLSLSQNQL---NKFPTVLFNLQHLDVLDLSFNRIESIPDGI-- 188
++ SF+ + +L+ L L + L + P+ L++L +LDLS N I +I D +
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 189 GKMKVIEMNLNKNQICHISPD---------ISECVRLKILRLEENCLAINAIPTCILTSS 239
G K+ ++L N + + + L IL LE N
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLF 560
Query: 240 NVCTLNVEGNLFE 252
+ +++ N
Sbjct: 561 ELKIIDLGLNNLN 573
Score = 71.2 bits (175), Expect = 4e-14
Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 22/219 (10%)
Query: 57 VINLSHQGFKEFPDEM--NELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIE 113
++LS+ + L LD+S N ++ D A L+ + N I+
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Query: 114 SL-PKDIGTLEKLE--NVSGN--------CNLIKELPLSFSKLHNLKHLSLSQNQLNKFP 162
L + L + N+ + +L K SF L L+HL++ N +
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345
Query: 163 TVLF-NLQHLDVLDLSFNRIESIP------DGIGKMKVIEMNLNKNQICHISPD-ISECV 214
+ +F L +L L LS + + + +NL KN+I I D S
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
Query: 215 RLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEM 253
L++L L N + N+ + + N +
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444
Score = 68.9 bits (169), Expect = 2e-13
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 57 VINLSH---QGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKI 112
+ L + P L+ L LD+S N I+ D L + L+ L N +
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRN-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 113 ESLPKD---------IGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKF- 161
L K + L L ++ N E+ F L LK + L N LN
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576
Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGI 188
+V N L L+L N I S+ +
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKV 603
Score = 63.1 bits (154), Expect = 2e-11
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 16/168 (9%)
Query: 57 VINLSHQGFKEFPDE-MNELKAVLRTLDISQNKISKFPLD---------LASYQLLKSLT 106
+++LS+ D+ + L+ L LD+ N +++ L L L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 107 FDQNKIESLPKD-IGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV 164
+ N + +P + L +L+ + N + L F+ +LK L+L +N +
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 165 LF--NLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDI 210
+F ++L LD+ FN + + I +N I +S
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNW-INETHTNIPELSSHY 649
Score = 44.6 bits (106), Expect = 2e-05
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG-IGKM-KVIEMNLNKNQIC 204
+ + S +L + P L ++ VL+L+ N++ +P + ++ +++ N I
Sbjct: 5 SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 205 HISPD-ISECVRLKILRLEEN 224
+ P+ + LK+L L+ N
Sbjct: 63 KLEPELCQKLPMLKVLNLQHN 83
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 80.7 bits (200), Expect = 2e-17
Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 29/213 (13%)
Query: 67 EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEK 124
+ P ++ L +L +S N +S P L S L+ L N +E +P+++ ++
Sbjct: 409 KIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 125 LENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE 182
LE + +L E+P S NL +SLS N+L + P + L++L +L LS N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 183 -SIPDGIGKMKVIE-MNLNKNQI---------------------CHISPDISECVRLKIL 219
+IP +G + + ++LN N I K
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 220 RLEENCLAIN-AIPTCILTSSNVCTLNVEGNLF 251
N L + S N+ ++
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Score = 76.9 bits (190), Expect = 4e-16
Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 39/232 (16%)
Query: 57 VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIE-S 114
+++S +F ++ L+ L+IS N+ P+ + L+ L+ +NK
Sbjct: 227 HLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGE 284
Query: 115 LPKDI-GTLEKLENVS-GNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPT-VLFNLQH 170
+P + G + L + + +P F L+ L+LS N + + P L ++
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 171 LDVLDLSFNRIE-SIPDGIGKMK----------------------------VIEMNLNKN 201
L VLDLSFN +P+ + + + E+ L N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 202 QIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
I P +S C L L L N L+ IP+ + + S + L + N+ E
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLRDLKLWLNMLE 455
Score = 67.6 bits (166), Expect = 6e-13
Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 19/211 (9%)
Query: 57 VINLSHQGFK----EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
I+LS + + L L +L +S + I+ L SL +N +
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTG-LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112
Query: 113 E-SLP--KDIGTLEKLENVS-GNCNLIKELPLS-FSKLHNLKHLSLSQNQLN-KFPTVLF 166
+ +G+ L+ ++ + L +S KL++L+ L LS N ++
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172
Query: 167 ---NLQHLDVLDLSFNRIE-SIPDGIGKMK-VIEMNLNKNQICHISPDISECVRLKILRL 221
L L +S N+I + + + + ++++ N P + +C L+ L +
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI 230
Query: 222 EENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
N L+ I T + + LN+ N F
Sbjct: 231 SGNKLS-GDFSRAISTCTELKLLNISSNQFV 260
Score = 67.6 bits (166), Expect = 7e-13
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 69 PDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLE 126
+++N L +I+ + + L N + +PK+IG++ L
Sbjct: 601 SEQLNRLST-RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659
Query: 127 --NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE- 182
N+ N ++ +P L L L LS N+L+ + P + L L +DLS N +
Sbjct: 660 ILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 183 SIPDG 187
IP+
Sbjct: 719 PIPEM 723
Score = 64.9 bits (159), Expect = 5e-12
Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 20/187 (10%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIE-SLPKDIGTLEKLENVS----G 130
L+ L++S N + FP ++ L SL N I + + +
Sbjct: 128 LKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGI 188
+ ++ +S + NL+ L +S N + P L + L LD+S N++ I
Sbjct: 187 GNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI 243
Query: 189 GKMKVIE-MNLNKNQI-CHISPDISECVRLKILRLEENCLAINAIPTCILTS-SNVCTLN 245
++ +N++ NQ I P L+ L L EN IP + + + L+
Sbjct: 244 STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLD 300
Query: 246 VEGNLFE 252
+ GN F
Sbjct: 301 LSGNHFY 307
Score = 64.9 bits (159), Expect = 5e-12
Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 32/176 (18%)
Query: 57 VINLSHQGFK-EFPDEMNELKAVLRTLDISQNKIS---------------------KFPL 94
++ LS+ F P E+ + ++ L LD++ N + K +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 95 DLASYQLLKSLTFDQNKIE---SLPKDIGTLEKLE--NVSGNCNLIKELPLSFSKLHNLK 149
+ + + K N +E + + L N++ +F ++
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-VYGGHTSPTFDNNGSMM 635
Query: 150 HLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIE-MNLNKNQ 202
L +S N L+ P + ++ +L +L+L N I SIPD +G ++ + ++L+ N+
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Score = 39.1 bits (92), Expect = 0.001
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 146 HNLKHLSLSQNQLN----KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNK 200
+ + LS LN + L +L L+ L LS + I G + ++L++
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 201 NQICHISPD---ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
N + + C LK L + N L + L +++ L++ N
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 80.2 bits (198), Expect = 2e-17
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 12/155 (7%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTF----DQNKIESLPKDI-GTLEKLENVSGNCN 133
LR L + N I P ++ + SL + K+E + + L L+ ++
Sbjct: 149 LRELWLRNNPIESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206
Query: 134 LIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GK 190
IK++P + + L L+ L +S N + F L L L + +++ I G
Sbjct: 207 NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265
Query: 191 MKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
++E+NL N + + D+ + L L L N
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 76.3 bits (188), Expect = 6e-16
Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 35/187 (18%)
Query: 54 KTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-LDLASYQLLKSLTFDQNKI 112
+ + + +G E P + + R L++ +N I L+ L +N I
Sbjct: 55 QFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 113 ESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHL 171
+ +F+ L +L L L N L P+ F L L
Sbjct: 112 RQIE----------------------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149
Query: 172 DVLDLSFNRIESIPDGI----GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCL 226
L L N IESIP + +++ ++ +IS LK L L
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMC-- 206
Query: 227 AINAIPT 233
I +P
Sbjct: 207 NIKDMPN 213
Score = 47.0 bits (112), Expect = 3e-06
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKD-IGTLEKLENVSGNCNLIK 136
L L++S N + LK L +++ + ++ L L ++ N +
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 137 ELPLS-FSKLHNLKHLSLSQNQLN 159
LP F+ L L L L N N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 79.3 bits (196), Expect = 3e-17
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
L + I+ I+ P L L L D NKI + L L + + N I
Sbjct: 173 LSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 138 LP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-------- 188
+ S + +L+ L L+ N+L K P L + +++ V+ L N I +I
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290
Query: 189 GKMKVIEMNLNKNQICH--ISPDISECVR-LKILRLEEN 224
K ++L N + + I P CV ++L
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 77.7 bits (192), Expect = 1e-16
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
LR + S + K P DL L NKI + L+ L + N I +
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 138 L-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVI 194
+ P +F+ L L+ L LS+NQL + P + + L L + N I + + G ++I
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148
Query: 195 EMNLNKNQI--CHISPDI-SECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251
+ L N + I +L +R+ + I IP + ++ L+++GN
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGLP--PSLTELHLDGNKI 204
Query: 252 EM---KAFQQL 259
+ + L
Sbjct: 205 TKVDAASLKGL 215
Score = 57.7 bits (140), Expect = 8e-10
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 11/113 (9%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
L L +S N IS LA+ L+ L + NK+ +P + + ++ V + N I
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Query: 138 LP-------LSFSKLHNLKHLSLSQNQLNKF---PTVLFNLQHLDVLDLSFNR 180
+ +K + +SL N + + P+ + + L +
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 79.6 bits (197), Expect = 5e-17
Identities = 51/146 (34%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L LDIS NK+S LA L+SL N+I + +G L L+ +S N N +K++
Sbjct: 179 LERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI 236
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ + L NL L L+ NQ++ L L L L L N+I +I G + + L
Sbjct: 237 G-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 294
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
N+NQ+ ISP IS L L L N
Sbjct: 295 NENQLEDISP-ISNLKNLTYLTLYFN 319
Score = 76.9 bits (190), Expect = 3e-16
Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 6/172 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L + N+IS LA L +L ++N++E + I L+ L ++ N I ++
Sbjct: 267 LTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI 324
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
S L L+ L N+++ + L NL +++ L N+I + ++ ++ L
Sbjct: 325 S-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGL 382
Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250
N + + + I +N P I + ++ NL
Sbjct: 383 NDQAWTNAPVNYKAN--VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432
Score = 74.6 bits (184), Expect = 2e-15
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ TL + I + L + F N++ + + L KL ++ N N I ++
Sbjct: 48 VTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L NL L+L NQ+ L NL +L+ L+LS N I I G + +++
Sbjct: 106 T-PLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
NQ+ + P ++ L+ L + N
Sbjct: 164 G-NQVTDLKP-LANLTTLERLDISSN 187
Score = 71.5 bits (176), Expect = 2e-14
Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 18/194 (9%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ + ++ + + +L D+ I+S+ + L L ++ + N + ++
Sbjct: 26 KMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI 83
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM-KVIEMN 197
L L + ++ NQ+ L NL +L L L N+I I + + + +
Sbjct: 84 T-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140
Query: 198 LNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN-------L 250
L+ N I IS +S L+ L + + + + L++ N L
Sbjct: 141 LSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANL----TTLERLDISSNKVSDISVL 195
Query: 251 FEMKAFQQLDGYNN 264
++ + L NN
Sbjct: 196 AKLTNLESLIATNN 209
Score = 58.4 bits (142), Expect = 5e-10
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQ 169
I + D L + + + S + L + L + + + L
Sbjct: 12 TPINQIFTDTA-LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLN 68
Query: 170 HLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
+L ++ S N++ I + + K++++ +N NQI I+P ++ L L L N +
Sbjct: 69 NLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI 124
Score = 56.5 bits (137), Expect = 2e-09
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L+ L NK+S LA+ + L+ N+I L + L ++ + N
Sbjct: 333 LQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNA 390
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
P+++ ++ + + P + + D+++N
Sbjct: 391 PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437
Score = 55.0 bits (133), Expect = 8e-09
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ L N+IS LA+ + L + + P + + N N
Sbjct: 355 INWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNR 180
P + S + ++ N + V + +
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 77.8 bits (192), Expect = 7e-17
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 5/146 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ TL ++ + L L N+I L + L K+ + + N +K +
Sbjct: 43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV 100
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ + L ++K L L+ Q+ L L +L VL L N+I +I G + +++
Sbjct: 101 S-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
Q+ ++P ++ +L L+ ++N
Sbjct: 159 GNAQVSDLTP-LANLSKLTTLKADDN 183
Score = 75.1 bits (185), Expect = 7e-16
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ L++S N + +A Q +K+L +I + + L L+ + + N I +
Sbjct: 87 ITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI 144
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L NL++LS+ Q++ L NL L L N+I I +IE++L
Sbjct: 145 S-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
NQI +SP ++ L I+ L
Sbjct: 203 KNNQISDVSP-LANTSNLFIVTLTNQ 227
Score = 73.2 bits (180), Expect = 3e-15
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L++ N+I+ L + + L N ++++ I L+ ++ + I ++
Sbjct: 65 LIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV 122
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L NL+ L L NQ+ L L +L L + ++ + K+ +
Sbjct: 123 T-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
+ N+I ISP ++ L + L+ N
Sbjct: 181 DDNKISDISP-LASLPNLIEVHLKNN 205
Score = 65.9 bits (161), Expect = 1e-12
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L+ L + N+I+ LA L+ L+ ++ L + L KL + + N I ++
Sbjct: 131 LQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L NL + L NQ++ L N +L ++ L+ I + P V+ +
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
Query: 199 NKNQICHISPD 209
I+P
Sbjct: 247 KGPSGAPIAPA 257
Score = 61.2 bits (149), Expect = 5e-11
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
+ ++ + L+ + +S + + L+NL L L NQ+
Sbjct: 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL 78
Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-NLNKNQICHISPDISECVRLKILR 220
L NL + L+LS N ++++ I ++ I+ +L QI ++P ++ L++L
Sbjct: 79 A-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLY 135
Query: 221 LEEN 224
L+ N
Sbjct: 136 LDLN 139
Score = 42.0 bits (99), Expect = 9e-05
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L TL NKIS LAS L + N+I + + L V+ I
Sbjct: 175 LTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQ 232
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPD 186
P+ ++ + ++ + P + + +L++N I +
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 77.5 bits (191), Expect = 8e-17
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 18/199 (9%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
++ + ++ P DL L +N + + +L ++ + + +
Sbjct: 12 HLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIE 195
L + L L L LS NQL P + L L VLD+SFNR+ S+P G G ++ E
Sbjct: 70 LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 196 MNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN---- 249
+ L N++ + P + + +L+ L L N + +P +L N+ TL ++ N
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 250 ----LFEMKAFQQLDGYNN 264
F + N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 77.2 bits (191), Expect = 1e-16
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 30/166 (18%)
Query: 67 EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE 126
P + +L L L I+ +S ++P + ++ L
Sbjct: 92 PIPPAIAKLTQ-LHYLYITHTNVS----------------------GAIPDFLSQIKTLV 128
Query: 127 --NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLD-VLDLSFNRIE 182
+ S N L LP S S L NL ++ N+++ P + L + +S NR+
Sbjct: 129 TLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 183 -SIPDGIGKMKVIEMNLNKNQI-CHISPDISECVRLKILRLEENCL 226
IP + + ++L++N + S + + L +N L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Score = 68.7 bits (169), Expect = 1e-13
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 32/188 (17%)
Query: 67 EFPDEMNELKAVLRTLDISQNKIS-KFPLDLASYQLLKSLTFDQNKIE-SLPKDIGTLEK 124
PD ++++K L TLD S N +S P ++S L +TFD N+I ++P G+ K
Sbjct: 116 AIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 125 LE---NVS------------GNCNLIK----------ELPLSFSKLHNLKHLSLSQNQLN 159
L +S N NL + + F N + + L++N L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 160 -KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKMKVIEM-NLNKNQICHISPDISECVRL 216
+ ++L+ LDL NRI ++P G+ ++K + N++ N +C P R
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 217 KILRLEEN 224
+ N
Sbjct: 294 DVSAYANN 301
Score = 68.3 bits (168), Expect = 1e-13
Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 102 LKSLTFDQNKIE---SLPKDIGTLEKLE--NVSGNCNLIKELPLSFSKLHNLKHLSLSQN 156
+ +L + +P + L L + G NL+ +P + +KL L +L ++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 157 QLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDGIGKM-KVIEMNLNKNQIC-HISPDISE 212
++ P L ++ L LD S+N + ++P I + ++ + + N+I I
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 213 CVRL-KILRLEENCL 226
+L + + N L
Sbjct: 172 FSKLFTSMTISRNRL 186
Score = 50.2 bits (121), Expect = 2e-07
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLN---KFPTVLFNLQHLDVLDLS-FNRIE-SIP 185
N + L + ++ + + +L LS L P+ L NL +L+ L + N + IP
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 186 DGIGKM-KVIEMNLNKNQIC-HISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCT 243
I K+ ++ + + + I +S+ L L N L +P I + N+
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVG 153
Query: 244 LNVEGNLF 251
+ +GN
Sbjct: 154 ITFDGNRI 161
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 78.5 bits (194), Expect = 1e-16
Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 10/182 (5%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS----GNCNL 134
L+ LD+S N + + + L+ L F + ++ + + L N+ + +
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHT 433
Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNKF--PTVLFNLQHLDVLDLSFNRIESI-PDGIGKM 191
F+ L +L+ L ++ N + P + L++L LDLS ++E + P +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 192 K-VIEMNLNKNQICHISPD-ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
+ +N++ N + L++L N + + S++ LN+ N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 250 LF 251
F
Sbjct: 554 DF 555
Score = 77.4 bits (191), Expect = 3e-16
Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 12/203 (5%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+L + D + L++ K +FP LK LTF NK +
Sbjct: 286 SFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAF 341
Query: 117 KDIGTLEKLE--NVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV 173
++ L LE ++S N K S +LK+L LS N + + L+ L+
Sbjct: 342 SEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400
Query: 174 LDLSFNRIESIPDG--IGKMKVIEM-NLNKNQICHISPD-ISECVRLKILRLEENCLAIN 229
LD + ++ + + ++ + +++ + L++L++ N N
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 230 AIPTCILTSSNVCTLNVEGNLFE 252
+P N+ L++ E
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE 483
Score = 68.5 bits (168), Expect = 3e-13
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 9/153 (5%)
Query: 81 TLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVS-GNCNLIKEL 138
T + K P +L K+L N + L + +L+ + C +
Sbjct: 11 TYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG-IGKMK-VIE 195
++ L +L L L+ N + F L L L + S+ + IG +K + E
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 196 MNLNKNQI--CHISPDISECVRLKILRLEENCL 226
+N+ N I + S L+ L L N +
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 56.2 bits (136), Expect = 3e-09
Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 38/234 (16%)
Query: 57 VINLSHQGFKEFPDE----MNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI 112
++LS + ++++ + +LD+S N ++ L LT N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 113 -----ESLPKDIGTLEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKF----- 161
++ + + LE V G L S L L +L++ + +L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 162 --PTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPD---------- 209
+ L ++ L IE + D + L +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 210 ----------ISECVRLKILRLEENCL-AINAIPTCILTSSNVCTLNVEGNLFE 252
+ L+ L L N L ++++ L++ N
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 75.8 bits (187), Expect = 2e-16
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
++ + + I + + LK L N+I L + L KLE +S N N +K L
Sbjct: 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL 100
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L L L N+L + L +L++L++L + N+++SI K+ ++L
Sbjct: 101 --NGIPSACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDL 157
Query: 199 NKNQICHISPDISECVRLKILRLEEN 224
+ N+I + ++ ++ + L
Sbjct: 158 HGNEITNTGG-LTRLKKVNWIDLTGQ 182
Score = 63.1 bits (154), Expect = 7e-12
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L+ L +S N+IS L L+ L+ ++N++++L + L + + N +++
Sbjct: 65 LKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT 121
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
S L NL+ LS+ N+L +L L L+VLDL N I + KV ++L
Sbjct: 122 D-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLN 245
+ + L + + SN +
Sbjct: 180 TGQKCVN-----EPVKYQPELYITNTVKDPDGRWISPYYISNGGSYV 221
Score = 48.5 bits (116), Expect = 6e-07
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 6/141 (4%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
I ++ L N +L + + + L + + + I+S+
Sbjct: 5 RPTPINQVF-PDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQFF 62
Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLA-INAIPTCILTSSNVCTLNVEG- 248
+ E++L+ NQI +SP + + +L+ L + N L +N IP+ L+ + +
Sbjct: 63 TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT 121
Query: 249 -NLFEMKAFQQLDGYNNYMDS 268
+L +K + L NN + S
Sbjct: 122 DSLIHLKNLEILSIRNNKLKS 142
Score = 40.0 bits (94), Expect = 4e-04
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 2/108 (1%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L I NK+ L L+ L N+I + + L+K+ +
Sbjct: 130 LEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPD 186
P+ + + + + P + N + + +
Sbjct: 188 PVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235
Score = 33.8 bits (78), Expect = 0.043
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 153 LSQNQLNK-FPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDIS 211
+N+ FP L + +L + + V N + + I ++ +
Sbjct: 4 QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQ 60
Query: 212 ECVRLKILRLEENCL 226
LK L L N +
Sbjct: 61 FFTNLKELHLSHNQI 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 74.5 bits (183), Expect = 1e-15
Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 17/179 (9%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKI-ESL 115
E P + L L K+ + + L+ + QN + E +
Sbjct: 14 FLCQESKVTEIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 116 P----KDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQ 169
++ L ++ N + + F L NL++L +S + P V +
Sbjct: 71 EADVFSNLPKLHEIR--IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128
Query: 170 HLDVLDLSFN-RIESIPDGI---GKMKVIEMNLNKNQICHISPDISECVRLKILRLEEN 224
+LD+ N I +I + + + LNKN I I +L L L +N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187
Score = 52.1 bits (125), Expect = 6e-08
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 75 LKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNC 132
L L +++N I + QL + D N +E LP D+ + +
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 133 NLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNR 180
I LP L L+ S L K PT L L L L++
Sbjct: 212 TRIHSLPSYGLENLKKLRARST--YNLKKLPT-LEKLVALMEASLTYPS 257
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 73.5 bits (181), Expect = 2e-15
Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 38/207 (18%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
+ LD+S N + S+ L+ L + +I+++ +L L + N I+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 137 ELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLDV------------------ 173
L L +FS L +L+ L + L L+ L+V
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 174 ----LDLSFNRIESIPDGI------GKMKVIEMNLNKNQICHISPDISECVRLKILRLEE 223
LDLS N+I+SI + + ++L+ N + I P + +RLK L L+
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209
Query: 224 NCLAINAIPTCILTS-SNVCTLNVEGN 249
N + ++P I +++ + + N
Sbjct: 210 N--QLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 48.4 bits (116), Expect = 7e-07
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQI 203
+ K+L LS N L + F + L VLDLS I++I DG + + L N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 204 CHISPDI-SECVRLKILRLEEN 224
++ S L+ L E
Sbjct: 89 QSLALGAFSGLSSLQKLVAVET 110
Score = 36.1 bits (84), Expect = 0.008
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 22/87 (25%)
Query: 70 DEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS 129
++++ + +LD+S N ++ LK L D N+++S+P I
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI---------- 219
Query: 130 GNCNLIKELPLSFSKLHNLKHLSLSQN 156
F +L +L+ + L N
Sbjct: 220 ------------FDRLTSLQKIWLHTN 234
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 73.5 bits (181), Expect = 2e-15
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 79 LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDIGT-LEKLENVSGNCNLIK 136
LR L ++ NK+ P + + L++L NK+++LP + L L + + N +K
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 137 ELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMK 192
LP F L L +LSL N+L P +F L L L L N+++ +P+G +
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 193 VIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
+ + L+ NQ+ + +LK+L+L+EN
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 59.2 bits (144), Expect = 2e-10
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 133 NLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI-- 188
N + LP F +L L+ L L+ N+L P +F L++L+ L ++ N+++++P G+
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 189 GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
+ + E+ L++NQ+ + P + +L L L N
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 74.1 bits (182), Expect = 2e-15
Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 36/183 (19%)
Query: 79 LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
LD+S N +S+ + +L L SL N + + +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE------------------ 82
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKV 193
+F + NL++L LS N L+ LF +LQ L+VL L N I + ++
Sbjct: 83 ----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138
Query: 194 IEMNLNKNQICHISPDI----SECVRLKILRLEENCLAINAIPTCI---LTSSNVCTLNV 246
++ L++NQI ++ ++ +L +L L N + +P L + L +
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--KLKKLPLTDLQKLPAWVKNGLYL 196
Query: 247 EGN 249
N
Sbjct: 197 HNN 199
Score = 37.1 bits (86), Expect = 0.005
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI---GKMKVIEMNLNKNQI 203
LS S+ QL P L + + +LDLS N + + + + L+ N +
Sbjct: 19 ASNILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76
Query: 204 CHISPDI-SECVRLKILRLEENCL 226
IS + L+ L L N L
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHL 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 74.8 bits (184), Expect = 2e-15
Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 18/185 (9%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLE--NVSGNCNLIK 136
R +++ P L + + L N I ++ LE+L+ + +
Sbjct: 7 RIAFYRFCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESI---PDGIGKMK 192
+F L NL+ L L +++ F L HL L L F + +K
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 193 VIEM-NLNKNQICHISPD--ISECVRLKILRLEENCLAINAIPTCI---LTSSNVCTLNV 246
+ +L+KNQI + + LK + N I + L + ++
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--QIFLVCEHELEPLQGKTLSFFSL 181
Query: 247 EGNLF 251
N
Sbjct: 182 AANSL 186
Score = 72.1 bits (177), Expect = 2e-14
Identities = 40/208 (19%), Positives = 81/208 (38%), Gaps = 7/208 (3%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY-QLLKSLTFDQNKIESL 115
++LSH + E L+ L+++ NKI+K + L+ L N + L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 116 PKDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV 173
L K+ + N I + +F L L+ L L N L + +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPD 385
Query: 174 LDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPT 233
+ LS N++ ++P +I ++ N+ + I + L+IL L +N + +
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Query: 234 CILTSSNVCTLNVEGNLFEMKAFQQLDG 261
+ ++ L + N+ ++ +L
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCW 473
Score = 71.4 bits (175), Expect = 3e-14
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 79 LRTLDISQNKISKFPLD--LASYQLLKSLTFDQNKIESLPKD--IGTLEKLENVSGNCNL 134
+ +S+N++ + L L+ L +QN+ S D LE + N+
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 135 IKELPLS------FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDG 187
++ + F L +L+ L L+ N LN P +F +L L L L+ NR+ +
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522
Query: 188 IGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
+ +++++NQ+ +PD+ V L +L + N
Sbjct: 523 DLPANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKF 559
Score = 67.9 bits (166), Expect = 5e-13
Identities = 41/207 (19%), Positives = 82/207 (39%), Gaps = 18/207 (8%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL 115
V+NL++ + DE L+ L++S N + + + + +N I +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 116 PKDI-GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL 174
LEKL+ + N + + + ++ + LS N+L P + +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANL---I 406
Query: 175 DLSFNRIESIPDG--IGKMKVIEM-NLNKNQICHISPD--ISECVRLKILRLEEN---CL 226
LS NR+E++ + ++ +++ LN+N+ S D SE L+ L L EN
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466
Query: 227 AINAIPTCILTS-SNVCTLNVEGNLFE 252
+ + S++ L + N
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLN 493
Score = 64.4 bits (157), Expect = 8e-12
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 39/231 (16%)
Query: 57 VINLSHQGFKEFPDEMNELKAV--LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKI 112
+ L G + + + + L LD+S+N+I L + +L LKS+ F N+I
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Query: 113 ESLPKDIGTLEKLENVS------GNCNLIKELPLSFSKLHN------LKHLSLSQNQLNK 160
+ + LE L+ + +L + + + K N L+ L +S N
Sbjct: 161 FLVCEH--ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218
Query: 161 FPTVLFN-------------LQHLDVLDLSFNRIESIP----DGIGKMKVIEMNLNKNQI 203
T F+ H+ F+ I+ G+ + V ++L+ +
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278
Query: 204 CHISPDISECV-RLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFE 252
++ + E + LK+L L N IN I N+ LN+ NL
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSYNLLG 327
Score = 62.1 bits (151), Expect = 4e-11
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%)
Query: 79 LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKD------IGTLEKLENVSG 130
L+ L ++QN+ S D + L+ L +N ++ + L L+ +
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 131 NCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIG 189
N N + LP FS L L+ LSL+ N+L +L++LD+S N++ + +
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPDVF 546
Query: 190 KMKVIEMNLNKNQICHIS 207
+ + IC
Sbjct: 547 VSLSVLDITHNKFICECE 564
Score = 59.8 bits (145), Expect = 2e-10
Identities = 32/196 (16%), Positives = 53/196 (27%), Gaps = 30/196 (15%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
LR LD+ +KI D L L +
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK------------------- 115
Query: 138 LPLSFSKLHNLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPD----GIGKM 191
F L L L LS+NQ+ L L +D S N+I + + +
Sbjct: 116 -DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174
Query: 192 KVIEMNLNKNQICHISPD--ISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEG 248
+ +L N + + + LE ++ N I SN + +
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 249 NLFEMKAFQQLDGYNN 264
+L +
Sbjct: 235 SLILAHHIMGAGFGFH 250
Score = 56.0 bits (135), Expect = 4e-09
Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 38/239 (15%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD---LASYQLLKSLTFDQNKIE 113
+++L + + L L + +S L + + L L +N+I
Sbjct: 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136
Query: 114 SLP--KDIGTLEKLENVSGNCNLIKELP-LSFSKLH--NLKHLSLSQNQLNKFPTVLF-- 166
SL G L L+++ + N I + L L SL+ N L +V +
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196
Query: 167 -----NLQHLDVLDLSFNRIESIPDGI--------------GKMKVIEMNLNKNQICHIS 207
L++LD+S N G ++ + I
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256
Query: 208 PDI---SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFEM---KAFQQL 259
+ ++ L L + ++ + + + ++ LN+ N +AF L
Sbjct: 257 QNTFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313
Score = 40.2 bits (94), Expect = 6e-04
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 32/135 (23%)
Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI----------------- 188
+ + L + P VL + L LSFN I ++
Sbjct: 4 FDGRIAFYRFCNLTQVPQVLNTTER---LLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 189 ----------GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILT 237
+ ++L ++I + PD L LRL L+ +
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 238 S-SNVCTLNVEGNLF 251
+ + L++ N
Sbjct: 121 NLKALTRLDLSKNQI 135
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 74.4 bits (183), Expect = 3e-15
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 79 LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
++T D+S++KI + + + L+ LT QN+I + + L L ++ + N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 137 ELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
+ F L L+ L LS N + F L +L L L N+++S+PDGI
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Score = 74.0 bits (182), Expect = 3e-15
Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 21/191 (10%)
Query: 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKI 112
++LS E + L+ L + Q + L L L D N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 113 ESLPKDI-GTLEKLENVSGNCNLIKELPL---SFSKLHNLKHLSLSQNQLNKFP--TVLF 166
L L LE ++ + L F L +L+ L L N + K +
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 167 NLQHLDVLDLSFNRIESIPDGI----GKMKVIEMNLNKNQICHISPDISE---------C 213
N++ VLDL+FN+++SI + + L+ + ++
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 214 VRLKILRLEEN 224
+ L L N
Sbjct: 212 TSITTLDLSGN 222
Score = 65.5 bits (160), Expect = 2e-12
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Query: 51 TAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQ 109
A +LS + L L ++QN+I+K + L L Q
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 110 NKIESLPKDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF- 166
N + S+ + L+KLE + + N I+ L SF L NLK L+L NQL P +F
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 167 NLQHLDVLDLSFN 179
L L + L N
Sbjct: 393 RLTSLQKIWLHTN 405
Score = 64.8 bits (158), Expect = 4e-12
Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 19/179 (10%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ TLD+S N + + FD + I + S K+
Sbjct: 214 ITTLDLSGNGFK---------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 139 P-LSFSKLH--NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMK 192
+F L +K LS++++ +F + L+ L L+ N I I D G
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 193 VIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGN 249
++++NL++N + I + +L++L L N I A+ N+ L ++ N
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN--HIRALGDQSFLGLPNLKELALDTN 381
Score = 52.4 bits (126), Expect = 6e-08
Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 38/207 (18%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI--GTLEKLENVSGNCN 133
L L ++Q + L ++ L SL N I+ + + + + N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 134 LIKELP-LSFSKLH--NLKHLSLSQNQLNKFPT---------VLFNLQHLDVLDLSFNRI 181
+K + + L LS L F + LDLS N
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 182 ESIPDG-----IGKMKVIEMNLNKNQICHIS------PDISECV-------RLKILRLEE 223
+ I K+ + L+ + S D +K L +
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284
Query: 224 NCLAINAIPTCILTS-SNVCTLNVEGN 249
+ + A+ + + +++ L + N
Sbjct: 285 SKIF--ALLKSVFSHFTDLEQLTLAQN 309
Score = 46.7 bits (111), Expect = 4e-06
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 147 NLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIE-SIPDGI--GKMKVIEMNLNKNQ 202
++ ++ LS N + + F LQ L L + I + G +I + L+ NQ
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 203 ICHISPDI-SECVRLKILRLEENCLAINAIP 232
+ + L++L L + L +
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 72.3 bits (178), Expect = 4e-15
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L TL + + + + L+ L N +++LP D L L ++ + N I
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 137 ELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
+P +F LH+L L L QN++ F +L L L L N + ++P
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Score = 68.5 bits (168), Expect = 1e-13
Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 33/181 (18%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLP 116
+ QG + P + A + + + N+IS P + + L L N + +
Sbjct: 16 TSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQN-QLNKFPTVLF-NLQHLDVL 174
+F+ L L+ L LS N QL F L L L
Sbjct: 73 ----------------------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110
Query: 175 DLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLAINAI 231
L ++ + G+ G + + L N + + D + L L L N I+++
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSV 168
Query: 232 P 232
P
Sbjct: 169 P 169
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 72.2 bits (177), Expect = 7e-15
Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 17/182 (9%)
Query: 59 NLSHQGFKEFPDEM-NELKAVLRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIES-- 114
N+S + E+ LK L+ L I+Q F + + L +L N
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 115 ------LPKDIGTLEKLENVSGN--CNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF 166
P TL+ L + + L+ L LS N L
Sbjct: 190 GLISALCPLKFPTLQVL-ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248
Query: 167 --NLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEEN 224
L+ L+LSF ++ +P G+ K+ ++L+ N++ P E ++ L L+ N
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLPA-KLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN 306
Query: 225 CL 226
Sbjct: 307 PF 308
Score = 68.4 bits (167), Expect = 1e-13
Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP-----LDLASYQLLKSLTFDQNK 111
V++++ F E + L TLD+S N L + L+ L
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 112 IESLPKDIGTLEKLE------NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVL 165
+E+ L ++S N S L L+LS L + P L
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272
Query: 166 FNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQI 203
L VLDLS+NR++ P +V ++L N
Sbjct: 273 P--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
Score = 46.8 bits (111), Expect = 3e-06
Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 20/213 (9%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI---ESL 115
F + ++ + +R I + L + L+ LT + ++
Sbjct: 55 EADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA-LRVLGISGLQELTLENLEVTGTAPP 113
Query: 116 PKDIGTLEKLENVSGNCNLIKELPLSFSKLHN-----LKHLSLSQNQLNKFP-TVLFNLQ 169
P T L ++ ++L LK LS++Q F +
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 170 HLDVLDLSFNRIESIPDGIGKM------KVIEMNLNKNQICHISPDISEC----VRLKIL 219
L LDLS N I + + + L + S S V+L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 220 RLEENCLAINAIPTCILTSSNVCTLNVEGNLFE 252
L N L A S + +LN+ +
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 73.3 bits (179), Expect = 7e-15
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
R L ++ ++ L L+ L N++ +LP + L LE + + N ++ +
Sbjct: 444 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502
Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPDGIGKMKVI 194
+ L L+ L L N+L + + L + L +L+L N + ++ +
Sbjct: 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Score = 69.4 bits (169), Expect = 1e-13
Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 52/219 (23%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQ-------- 109
L + + + + L ++S K + +L S + L+ L +
Sbjct: 331 CVLLKDRPECWCRDSATDEQ-LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 389
Query: 110 ------NKIESLPKDIGTLEKLENVSG--------------------------------N 131
+ + + + L+ V
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449
Query: 132 CNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM 191
+ L +L + HL LS N+L P L L+ L+VL S N +E++ G+ +
Sbjct: 450 HKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANL 507
Query: 192 KVIE-MNLNKNQICHIS--PDISECVRLKILRLEENCLA 227
++ + L N++ + + C RL +L L+ N L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Score = 49.0 bits (116), Expect = 7e-07
Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 4/169 (2%)
Query: 82 LDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK-ELPL 140
+ +++ + D A+ + L K L ++ + ++L+ + + L
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390
Query: 141 SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNK 200
L L + + + V S +E+ + V ++L
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450
Query: 201 NQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
+ + + + + + L L N + A+P + + L N
Sbjct: 451 KDLTVL-CHLEQLLLVTHLDLSHNR--LRALPPALAALRCLEVLQASDN 496
Score = 29.0 bits (64), Expect = 2.3
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 145 LHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQIC 204
+ K L +++ + + L +LS + + + K ++ +N+ C
Sbjct: 325 SDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWC 384
Query: 205 HISPDISECVRLKILRLEENCLA 227
++ I L L E+ L
Sbjct: 385 LLT-IILLMRALDPLLYEKETLQ 406
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 72.1 bits (177), Expect = 1e-14
Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 35/203 (17%)
Query: 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE 113
G+ S P L +++LD+S N+I+ DL L++L N I
Sbjct: 33 NGICKGSSGSLNSIPSG---LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89
Query: 114 SLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLD 172
++ +D SFS L +L+HL LS N L+ + F L L
Sbjct: 90 TIEED----------------------SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127
Query: 173 VLDLSFNRIESIPDGIG----KMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCLA 227
L+L N +++ + I N + I + L+ L ++ +
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-- 185
Query: 228 INAIPTCILTS-SNVCTLNVEGN 249
+ + L S NV L +
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMK 208
Score = 67.1 bits (164), Expect = 5e-13
Identities = 26/189 (13%), Positives = 64/189 (33%), Gaps = 21/189 (11%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTF----DQNKIESLPKDI-GTLEKLENVSGNCN 133
L L++ N + + + L L + + + + L LE + + +
Sbjct: 126 LTFLNLLGNPYKTLG-ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Query: 134 LIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLDV--LDLSFNRIESIPD 186
++ S + N+ HL L Q + +++ L++ DL +
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244
Query: 187 G-----IGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS-SN 240
G I K + + + + +++ L L N + ++P I ++
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN--QLKSVPDGIFDRLTS 302
Query: 241 VCTLNVEGN 249
+ + + N
Sbjct: 303 LQKIWLHTN 311
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 70.1 bits (172), Expect = 1e-14
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 80 RTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSG---NCNL 134
L ++ N+ + +L L+ + F NKI + G E V+ N
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNR 92
Query: 135 IKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI---- 188
++ + F L +LK L L N++ F L + +L L N+I ++ G
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 189 GKMKVIEMNLNKNQI---CHI 206
+ + NL N C++
Sbjct: 153 HSLSTL--NLLANPFNCNCYL 171
Score = 59.3 bits (144), Expect = 9e-11
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
LR ++ S NKI+ + + N++E++ + LE L+ + N I
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 137 ELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
+ SF L +++ LSL NQ+ F L L L+L N
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 58.5 bits (142), Expect = 1e-10
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 133 NLIKELPLS--FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI- 188
N L + F KL L+ ++ S N++ F ++ + L+ NR+E++ +
Sbjct: 42 NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101
Query: 189 -GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
G + + L N+I + D +++L L +N
Sbjct: 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Score = 30.4 bits (69), Expect = 0.42
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 172 DVLDLSFNRIESIPDG---IGKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEEN 224
L L+ N + ++ ++N + N+I I + + L N
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 70.1 bits (172), Expect = 1e-14
Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 27/150 (18%)
Query: 80 RTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
+ + QN I P + Y+ L+ + N+I L D
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA------------------- 75
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGIGK--MKVIE 195
F L +L L L N++ + P LF L L +L L+ N+I + + +
Sbjct: 76 ---FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Query: 196 MNLNKNQICHISPDI-SECVRLKILRLEEN 224
++L N++ I+ S ++ + L +N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 61.2 bits (149), Expect = 2e-11
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 26/113 (23%)
Query: 79 LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
LR +D+S N+IS+ D A L L SL NKI LPK +
Sbjct: 58 LRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITELPKSL----------------- 99
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
F L +L+ L L+ N++N F +L +L++L L N++++I G
Sbjct: 100 -----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Score = 48.9 bits (117), Expect = 4e-07
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 79 LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L +L + NKI++ P L L+ L + NKI L D L L +S N ++
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 137 ELPL-SFSKLHNLKHLSLSQNQLN 159
+ +FS L ++ + L+QN
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPFI 165
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 68.8 bits (169), Expect = 3e-14
Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 6/149 (4%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVS-GNCNLIKE 137
L + ++ ++ + +K LT + + I L LE + ++ +
Sbjct: 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103
Query: 138 LPLSFSKLHNLKHLSLSQNQL-NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
+ S L +L L +S + + T + L ++ +DLS+N + + + ++
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163
Query: 197 -NLNKNQICHISPDISECVRLKILRLEEN 224
N+ + + I + +L L
Sbjct: 164 LNIQFDGVHDYRG-IEDFPKLNQLYAFSQ 191
Score = 64.2 bits (157), Expect = 1e-12
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 3/127 (2%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL-PKDIGTLEKLENVSGNCNLIKE 137
++ L I+ + + ++ L+ L + S ++ L L + + + +
Sbjct: 68 IKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 138 LPLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
L+ + L + + LS N L L L L++ F+ + K+ ++
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186
Query: 197 NLNKNQI 203
I
Sbjct: 187 YAFSQTI 193
Score = 54.6 bits (132), Expect = 3e-09
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 79 LRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE-SLPKDIGTLEKLENVS-GNCNLI 135
L L I ++ + +L+ L L + + S+ I TL K+ ++ I
Sbjct: 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 136 KELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESI 184
++ L LK L++ + ++ + + + L+ L I
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196
Score = 43.8 bits (104), Expect = 1e-05
Identities = 14/130 (10%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
+ N + ++ +++++L +++L+ + T + ++ L ++
Sbjct: 22 FKAYLNGLLGQSSTA--NITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78
Query: 182 ESIPDGIGKM-KVIEMNLNKNQICHIS-PDISECVRLKILRLEENCLAINAIPTCILTSS 239
+ + I + + + + + P++S L +L + + + + I T
Sbjct: 79 TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLP 136
Query: 240 NVCTLNVEGN 249
V ++++ N
Sbjct: 137 KVNSIDLSYN 146
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 71.4 bits (175), Expect = 3e-14
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 12/177 (6%)
Query: 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIE 113
+++ S++ P + L + L +SQN IS+ + D++ L+ L N+I
Sbjct: 33 ESMVDYSNRNLTHVPKD---LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89
Query: 114 SLPKDI-GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP-TVLF-NLQH 170
SL + + LE + + N ++ + + +L+HL LS N + P F NL
Sbjct: 90 SLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147
Query: 171 LDVLDLSFNRIESIPDGI---GKMKVIEMNLNKNQICHISPDISECVRLKILRLEEN 224
L L LS + + + I ++L I + + +L L +
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204
Score = 69.9 bits (171), Expect = 8e-14
Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 7/175 (4%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL-LKSLTFDQNKIESLP- 116
++ +Q F + + + A + +S + + L F QN
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFN-----LQHL 171
+ TL++L+ + N +K N+ L LN + ++ + +
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
VL+LS N + KV ++L+ N+I I D++ L+ L + N L
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Score = 61.4 bits (149), Expect = 7e-11
Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
L+ +QN + ++ + L++L +N +++ K + + ++ +
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 138 LP------------------LSFSKLH---------NLKHLSLSQNQLNKFPTVLFNLQH 170
L LS + L +K L L N++ P + +LQ
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474
Query: 171 LDVLDLSFNRIESIPDGI 188
L L+++ N+++S+PDG+
Sbjct: 475 LQELNVASNQLKSVPDGV 492
Score = 55.6 bits (134), Expect = 4e-09
Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 11/180 (6%)
Query: 79 LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
LR L +S N+I + Q L+ L N+++++ + L ++ + N
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDV 135
Query: 138 LPLS--FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDV--LDLSFNRIESIPDG---IGK 190
LP+ F L L L LS + + + HL LDL I+ I
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195
Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250
V+ + + N + + ++S L L+L L + S + N+
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVN-ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254
Score = 53.0 bits (127), Expect = 4e-08
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
L TLD+S N ++ D + L N + K++ + + N I
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM 463
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
+P + L L+ L+++ NQL P +F L L + L N
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 50.6 bits (121), Expect = 2e-07
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 131 NCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
+ N I EL + S L L+ L LS N++ +F Q L+ LD+S NR+++I
Sbjct: 60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP 119
Query: 189 GKMKVIEMNLNKNQICHI--SPDISECVRLKILRLEENCL 226
+ ++L+ N + + +L L L
Sbjct: 120 MA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 42.9 bits (101), Expect = 6e-05
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 147 NLKHLSLSQNQLNKF-PTVLFNLQHLDVLDLSFNRIESIPDGI-GKMKVIEM-NLNKNQI 203
K LSLSQN +++ + L L VL LS NRI S+ + + +E +++ N++
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 204 CHISPDISECVRLKILRLEENCL 226
+IS L+ L L N
Sbjct: 113 QNISCC--PMASLRHLDLSFNDF 133
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 69.9 bits (171), Expect = 8e-14
Identities = 43/225 (19%), Positives = 76/225 (33%), Gaps = 10/225 (4%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESL 115
+++ S G P + L L+ISQN IS+ D+ S L+ L N+I+ L
Sbjct: 4 LVDRSKNGLIHVPKD---LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 116 PKDI-GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFP--TVLFNLQHLD 172
+ ++LE + + N + ++ NLKHL LS N + P N+ L
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 173 VLDLSFNRIESIP-DGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
L LS +E I + + ++ L + D L
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178
Query: 232 PTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYMDSELQRSGLL 276
+ S N+ + + + + + L
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223
Score = 68.0 bits (166), Expect = 4e-13
Identities = 33/201 (16%), Positives = 78/201 (38%), Gaps = 10/201 (4%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASY-QLLKSLTFDQNKIESLPK 117
+ F + E+ + + + + + + S L F N +
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 118 DI-GTLEKLENVSGNCNLIKELPLS---FSKLHNLKHLSLSQNQLNKFPT--VLFNLQHL 171
+ G L +LE + N +KEL +++ +L+ L +SQN ++ + L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 172 DVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAI 231
L++S N + ++ ++L+ N+I I + + L+ L + N + ++
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN--QLKSV 459
Query: 232 PTCILTS-SNVCTLNVEGNLF 251
P I +++ + + N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480
Score = 48.7 bits (116), Expect = 9e-07
Identities = 23/210 (10%), Positives = 64/210 (30%), Gaps = 12/210 (5%)
Query: 63 QGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL----LKSLTFDQNKIESLPKD 118
+ L ++ + N + + + + ++
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 119 IGT-LEKLENVSGNCNLIKELP-LSFSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLD 175
GT L+ L ++ + N+ + + + + + + LD
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330
Query: 176 LSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDIS---ECVRLKILRLEENCLAINA 230
S N + ++ + L NQ+ +S + L+ L + +N ++ +
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Query: 231 IPTCILTSSNVCTLNVEGNLFEMKAFQQLD 260
+ ++ +LN+ N+ F+ L
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420
Score = 46.4 bits (110), Expect = 4e-06
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L +L++S N ++ +K L NKI+S+PK + LE L+ ++ N +K +
Sbjct: 401 LLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 139 PL-SFSKLHNLKHLSLSQNQLN 159
P F +L +L+ + L N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWD 481
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 67.3 bits (165), Expect = 2e-13
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQN-KIESLPKDIGTLEKLENVS----GNC 132
+TL + + + P ++ + + + ++ L + L V+ N
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNT 90
Query: 133 NLIKELPLS-FSKLHNLKHLSLSQNQLNKFP--TVLFNLQHLDVLDLSFN-RIESIPDGI 188
+ + +L LK L + L FP T +++ +L+++ N + SIP
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 189 GK---MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIP 232
+ + + + L N + +L + L +N + I
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKY-LTVID 196
Score = 35.4 bits (82), Expect = 0.012
Identities = 8/84 (9%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPD----GIGKMKVIEMNLNKN 201
H + ++ + + P++ + Q L L + +IP + + I ++++
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPSTQT---LKLIETHLRTIPSHAFSNLPNISRIYVSID-V 66
Query: 202 QICHISPDI-SECVRLKILRLEEN 224
+ + ++ + +
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNT 90
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 65.1 bits (159), Expect = 6e-13
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Query: 88 KISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHN 147
+ +A+ L IE + + TL+ ++++ + N I+++ S S + N
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMEN 71
Query: 148 LKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-NLNKNQICHI 206
L+ LSL +N + K + L+ L +S+N+I S+ GI K+ + + ++ N+I +
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW 130
Query: 207 SP--DISECVRLKILRLEENCLAINAIPTC 234
++ +L+ L L N L +
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENN 160
Score = 49.3 bits (118), Expect = 2e-07
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
+ ++ ++ LKA + L +S N I K L+ + L+ L+ +N I+ +
Sbjct: 31 HGMIPPIEKMDATLSTLKA-CKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENL 88
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDL 176
+ LE + + N I L KL NL+ L +S N++ + + L L L+ L L
Sbjct: 89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147
Query: 177 SFNRIESIPD 186
+ N + +
Sbjct: 148 AGNPLYNDYK 157
Score = 49.3 bits (118), Expect = 2e-07
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
LR L + +N I K A L+ L N+I SL I L L + + N I
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW 130
Query: 139 P--LSFSKLHNLKHLSLSQNQLNKF-----------PTVLFNLQHLDVLD 175
+ L L+ L L+ N L V+ L +L LD
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 64.2 bits (157), Expect = 1e-12
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKF 161
L D N+ +PK++ + L + + N I L SFS + L L LS N+L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 162 PTVLFN-LQHLDVLDLSFNRIESIPDGI 188
P F+ L+ L +L L N I +P+G
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Score = 55.4 bits (134), Expect = 1e-09
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 82 LDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPL 140
L + N+ + P +L++Y+ L + N+I +L + +L + + N ++ +P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 141 -SFSKLHNLKHLSLSQNQLNKFPTVLFN----LQHL 171
+F L +L+ LSL N ++ P FN L HL
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Score = 54.6 bits (132), Expect = 3e-09
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI- 188
+ N +P S +L + LS N+++ F N+ L L LS+NR+ IP
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 189 -GKMKVIEMNLNKNQI 203
G + ++L+ N I
Sbjct: 99 DGLKSLRLLSLHGNDI 114
Score = 40.0 bits (94), Expect = 2e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 151 LSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQICHISP 208
L L NQ P L N +HL ++DLS NRI ++ + M +++ + L+ N++ I P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 209 DI-SECVRLKILRLEEN 224
L++L L N
Sbjct: 96 RTFDGLKSLRLLSLHGN 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 63.9 bits (156), Expect = 2e-12
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI-GTLEKLENVSGNCNLI 135
+ L + N+I+K + L +L N++ +LP + +L +L + N +
Sbjct: 43 QILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 136 KELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG 187
LP + F +L +LK L + N+L + P + L HL L L N+++SIP G
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153
Score = 59.7 bits (145), Expect = 6e-11
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
+ L N+I L + +L L+ + N + LP+ F L L L L NQL
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 161 FPTVLFN-LQHLDVLDLSFNRIESIPDGIGKM-KVIEMNLNKNQ 202
P+ +F+ L HL L + N++ +P GI ++ + + L++NQ
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 63.9 bits (156), Expect = 3e-12
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTF---DQNK 111
T ++L G D L L++ N++ + + L L N+
Sbjct: 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV--FDDLTELGTLGLANNQ 94
Query: 112 IESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-L 168
+ SLP + L +L+ + N +K LP F +L LK L L+ NQL P F+ L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 169 QHLDVLDLSFNRIESIPDG 187
+L L LS N+++S+P G
Sbjct: 155 TNLQTLSLSTNQLQSVPHG 173
Score = 58.9 bits (143), Expect = 2e-10
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 103 KSLTFDQNKIESLP-KDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
+ L + +L L KL ++ + N ++ L F L L L L+ NQL
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 161 FPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRL 216
P +F +L LD L L N+++S+P G+ K+ E+ LN NQ+ I + L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 217 KILRLEENCL 226
+ L L N L
Sbjct: 158 QTLSLSTNQL 167
Score = 52.0 bits (125), Expect = 4e-08
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 79 LRTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L TL ++ N+++ PL + L L N+++SLP + L KL+ + N N ++
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 137 ELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
+P F KL NL+ LSLS NQL P F L L + L N
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 65.1 bits (159), Expect = 3e-12
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 79 LRTLDISQNKISKFP--------------------LDLASYQLLKSLTFDQNKIESLPKD 118
L +LD + I+ LDL+ L L D NK+ +L
Sbjct: 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-- 101
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSF 178
+ L KL ++ + N + +L S+ L +L+ ++N L + + + L LD
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157
Query: 179 NRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
N+ + D + ++ ++ + N+I + D+S+ L L + N +
Sbjct: 158 NKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNI 203
Score = 64.7 bits (158), Expect = 4e-12
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L NK++ LD+ L L D NK+ L + L ++ N + E+
Sbjct: 87 LTYLACDSNKLTN--LDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI 142
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM-N 197
+ S L L N+ + L LD SFN+I + + + K++ N
Sbjct: 143 DV--SHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLN 197
Query: 198 LNKNQICHISPDISECVRLKILRLEENCL 226
+ N I + D+++ ++L L N L
Sbjct: 198 CDTNNITKL--DLNQNIQLTFLDCSSNKL 224
Score = 63.2 bits (154), Expect = 1e-11
Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 15/182 (8%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L LD NK LD+ L +L NKI L D+ + L ++ + N I +L
Sbjct: 150 LTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL 206
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
++ L L S N+L + + L L D S N + + K+ ++
Sbjct: 207 D--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS-KLTTLHC 261
Query: 199 NKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTS-SNVCTLNVEGNLFEMKAFQ 257
+ + I D++ +L I +T + + L+ +
Sbjct: 262 IQTDLLEI--DLTHNTQLIYF----QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315
Query: 258 QL 259
Q
Sbjct: 316 QN 317
Score = 61.2 bits (149), Expect = 7e-11
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 13/159 (8%)
Query: 68 FPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLEN 127
FPD+ N V ++ + L SL + I + I L L
Sbjct: 15 FPDD-NFASEVAAAFEMQATD----TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTK 68
Query: 128 VSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG 187
+ N I L S+ NL +L+ N+L + L L L+ N++ +
Sbjct: 69 LICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS 124
Query: 188 IGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
+ +N +N + I D+S +L L N
Sbjct: 125 QNP-LLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKK 160
Score = 59.7 bits (145), Expect = 2e-10
Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 16/189 (8%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK 117
+ S E L TL Q + + +DL L + +
Sbjct: 238 FDCSVNPLTELDVSTLSK---LTTLHCIQTDLLE--IDLTHNTQLIYFQAEGCRKIKEL- 291
Query: 118 DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
D+ +L + I EL S+ L +L L+ +L + + + L L
Sbjct: 292 DVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCV 347
Query: 178 FNRIESIPDGIGKMKVIEMNLNKNQICHISPDI------SECVRLKILRLEENCLAINAI 231
I+ + + Q + + + V +L N + I
Sbjct: 348 NAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407
Query: 232 PTCILTSSN 240
+ +
Sbjct: 408 DGGVYDQAT 416
Score = 29.7 bits (67), Expect = 1.0
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L++L I F + L + + + ++PK+ T L L +
Sbjct: 341 LKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399
Query: 139 PLSFSKLHNLKHLSLSQNQLN 159
+ + + N +
Sbjct: 400 NPMNIEPGDGGVYDQATNTIT 420
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 62.0 bits (151), Expect = 8e-12
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI-GTLEKLENVSGNCNLI 135
LD+ N + P + L SLT NK++SLP + L L ++ + N +
Sbjct: 31 TYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 136 KELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
+ LP F KL LK L+L+ NQL P +F+ L L L L N+++S+PDG+
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
Score = 49.7 bits (119), Expect = 1e-07
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 55 TGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKI 112
T ++L K P+ + + L L + NK+ P + + +L L L N++
Sbjct: 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTNQL 88
Query: 113 ESLPKDI-GTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQ 169
+SLP + L +L+ ++ N N ++ LP F KL LK L L QNQL P +F L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 170 HLDVLDLSFN 179
L + L N
Sbjct: 149 SLQYIWLHDN 158
Score = 45.4 bits (108), Expect = 5e-06
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 111 KIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFN-LQ 169
S+P I ++ N +L F +L +L L L N+L P +FN L
Sbjct: 18 GRTSVPTGIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 170 HLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPDI-SECVRLKILRLEENCL 226
L L+LS N+++S+P+G+ ++ E+ LN NQ+ + + + +LK LRL +N L
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 61.6 bits (150), Expect = 3e-11
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTF---DQNKIESLPKDI-GTLEKLENVSGNCNL 134
L L ++ N++ P + + L +L +N+++SLP + L L ++ N
Sbjct: 87 LTYLILTGNQLQSLPNGV--FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 135 IKELPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
++ LP F KL NL L LS NQL P +F+ L L L L N+++S+PDG+
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
Score = 53.9 bits (130), Expect = 1e-08
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVSGNCNLIKE 137
+ + + + I + ++ L NK+ + L L + N ++
Sbjct: 43 IDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQS 99
Query: 138 LPLS-FSKLHNLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI----GKM 191
LP F KL NLK L L +NQL P +F+ L +L L+L+ N+++S+P G+ +
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159
Query: 192 KVIEMNLNKNQ 202
E++L+ NQ
Sbjct: 160 T--ELDLSYNQ 168
Score = 47.7 bits (114), Expect = 1e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 79 LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLI 135
L+ L + +N++ P + +L L L N+++SLPK + L L + + N +
Sbjct: 111 LKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 136 KELPLS-FSKLHNLKHLSLSQNQLNKFPTVLF----NLQHL 171
+ LP F KL LK L L QNQL P +F +LQ++
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 58.1 bits (141), Expect = 1e-10
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
LI++ ++ + L L ++ + L D +D S N I + DG
Sbjct: 5 TAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPL 62
Query: 191 MKVIE-MNLNKNQICHISPDISE-CVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEG 248
++ ++ + +N N+IC I + + L L L N L + + ++ L +
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Query: 249 N 249
N
Sbjct: 123 N 123
Score = 54.3 bits (131), Expect = 3e-09
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
R LD+ KI A+ ++ F N+I L L +L+ + N N I +
Sbjct: 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI 79
Query: 139 -PLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPD 186
L +L L L+ N L + + L +L+ L L + N + +
Sbjct: 80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130
Score = 50.4 bits (121), Expect = 7e-08
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGT-LEKLENVSGNCNLIKE 137
+D S N+I K + LK+L + N+I + + + L L + N + E
Sbjct: 44 FDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102
Query: 138 LP--LSFSKLHNLKHLSLSQNQLNKFP----TVLFNLQHLDVLDLSFNRIE 182
L + L +L +L + +N + V++ + + VLD +++
Sbjct: 103 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
Score = 48.9 bits (117), Expect = 2e-07
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 12/126 (9%)
Query: 105 LTFDQ-NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT 163
LT + + + + I + + L + S N++ K
Sbjct: 4 LTAELIEQAAQYTN----AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59
Query: 164 VLFNLQHLDVLDLSFNRIESIPDGIGKM--KVIEMNLNKNQICHISPDISE---CVRLKI 218
L+ L L ++ NRI I +G+ + + E+ L N + + D+ L
Sbjct: 60 -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLTY 117
Query: 219 LRLEEN 224
L + N
Sbjct: 118 LCILRN 123
Score = 30.8 bits (70), Expect = 0.29
Identities = 8/54 (14%), Positives = 21/54 (38%)
Query: 173 VLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCL 226
++ L+ IE ++ E++L +I I + + + +N +
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI 54
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 58.1 bits (141), Expect = 2e-10
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 103 KSLTFDQNKIESLPKD--IGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLN 159
L + N++ + D G L L + N + + + F +++ L L +N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 160 KFPTVLFN-LQHLDVLDLSFNRIESIPDGI 188
+ +F L L L+L N+I + G
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Score = 54.6 bits (132), Expect = 2e-09
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 80 RTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIK 136
L ++ N++ + D +L L L +N++ + + ++ + N IK
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 137 ELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFN 179
E+ F LH LK L+L NQ++ F +L L L+L+ N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 41.1 bits (97), Expect = 1e-04
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 151 LSLSQNQLNKFPT--VLFNLQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHI 206
L L+ N+L + + + L HL L+L N++ I G + E+ L +N+I I
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 207 SPDI-SECVRLKILRLEEN 224
S + +LK L L +N
Sbjct: 94 SNKMFLGLHQLKTLNLYDN 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 55.7 bits (135), Expect = 7e-10
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
L + NK++SLP + L +L +S + N I+ LP F KL L L L +N+L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 161 FPTVLF-NLQHLDVLDLSFNRIESIPDGI 188
P +F L L L L N+++S+PDGI
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Score = 47.3 bits (113), Expect = 7e-07
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 80 RTLDISQNKISKFPLDL-ASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKE 137
L++ NK+ P + L L+ QN+I+SLP + L KL + + N ++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 138 LPLS-FSKLHNLKHLSLSQNQLNKFPTVLF----NLQHL 171
LP F KL LK L+L NQL P +F +LQ +
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Score = 35.3 bits (82), Expect = 0.009
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 149 KHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICH 205
L L N+L P +F+ L L L LS N+I+S+PDG+ K+ + L++N++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 206 ISPDI-SECVRLKILRLEENCL 226
+ + + +LK L L+ N L
Sbjct: 91 LPNGVFDKLTQLKELALDTNQL 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 54.0 bits (130), Expect = 4e-09
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 69 PDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENV 128
P + EL LD ++ K A + L+ L+ + S+ ++ L KL+ +
Sbjct: 23 PAAVREL-----VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKL 76
Query: 129 SGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIP 185
+ N I + KL NL HL+LS N+L T+ L L+ L LDL + ++
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Query: 186 D 186
D
Sbjct: 137 D 137
Score = 47.8 bits (114), Expect = 5e-07
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE-MNL 198
+ + + L L ++ K + +L+ L L + S+ + K+ ++ + L
Sbjct: 21 RTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLEL 78
Query: 199 NKNQICHISPDISE-CVRLKILRLEENCLA 227
++N+I ++E L L L N L
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 54.4 bits (130), Expect = 9e-09
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 137 ELPLSFSKLHNLKHLSLS-QNQLNKFPTVLF-NLQHLDVLDLSFNRIESIPDGI--GKMK 192
+ NL L + Q L L L L + + + + +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 193 VIEMNLNKNQICHISPDISECVRLKILRLEEN 224
+ +NL+ N + +S + + L+ L L N
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 48.2 bits (114), Expect = 1e-06
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 24/105 (22%)
Query: 79 LRTLDIS-QNKISKFPL-DLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
L L I Q + L DL L++LT ++ + + D
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------------ 74
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
+F L L+LS N L L L LS N +
Sbjct: 75 ----AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 50.1 bits (120), Expect = 6e-08
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL- 138
LD S++ K ++ L+ L+ + S+ ++ L KL+ + + N +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL 80
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPD 186
+ K NL HL+LS N++ T+ L L++L LDL + ++ D
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 48.5 bits (116), Expect = 2e-07
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 147 NLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE-MNLNKNQI 203
++K L L ++ N K + + L+ L + SI + K+ ++ + L+ N++
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV 76
Query: 204 CHISPDISE-CVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN------------L 250
++E C L L L N + + + N+ +L++
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136
Query: 251 FEMKAFQQLDGYN 263
+ LDGY+
Sbjct: 137 KLLPQLTYLDGYD 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 47.6 bits (114), Expect = 5e-07
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF 161
KSL S+P I T + + N I +L F +L L L L NQL
Sbjct: 19 KSLA-------SVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 162 PTVLFN-LQHLDVLDLSFNRIESIPDGI 188
P +F+ L L L L+ N+++SIP G
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Score = 42.2 bits (100), Expect = 3e-05
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
+ L N+I L + L +L + + N + LP F KL L LSL+ NQL
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 161 FPTVLF----NLQHL 171
P F +L H+
Sbjct: 93 IPRGAFDNLKSLTHI 107
Score = 37.2 bits (87), Expect = 0.002
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 147 NLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQ 202
+ L L NQ+ K +F+ L L LDL N++ +P G+ K+ ++ +++LN NQ
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 47.6 bits (114), Expect = 5e-07
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKF 161
L S+P I T + + N N I +L F L NL+ L + N+L
Sbjct: 22 IRLA-------SVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72
Query: 162 PTVLF-NLQHLDVLDLSFNRIESIPDGI 188
PT +F L L LDL+ N ++SIP G
Sbjct: 73 PTGVFDKLTQLTQLDLNDNHLKSIPRGA 100
Score = 42.6 bits (101), Expect = 3e-05
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 103 KSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNK 160
+ L + N+I L + L L+ + N N + +P F KL L L L+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 161 FPTVLF----NLQHL 171
P F +L H+
Sbjct: 96 IPRGAFDNLKSLTHI 110
Score = 37.6 bits (88), Expect = 0.002
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 147 NLKHLSLSQNQLNKFPTVLFN-LQHLDVLDLSFNRIESIPDGI-GKM-KVIEMNLNKNQ 202
+ + L L+ NQ+ K +F+ L +L L + N++ +IP G+ K+ ++ +++LN N
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-05
Identities = 48/248 (19%), Positives = 81/248 (32%), Gaps = 68/248 (27%)
Query: 47 RHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLA-SYQLLKSL 105
+H K T +I S + P E + + L + FP LL +
Sbjct: 348 KHVNCDKLTTIIESSLNVLE--PAEY---RKMFDRLSV-------FPPSAHIPTILLSLI 395
Query: 106 TFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFS-KLHNLKHLSLSQNQLNKFPTV 164
FD I+S + + KL S L+++ P + + ++ +L L N+
Sbjct: 396 WFD--VIKSDVMVV--VNKLHKYS----LVEKQPKESTISIPSI-YLELKVKLENE--YA 444
Query: 165 LFNLQHLDVLDLSFNRIESIP---------DG-----IGK-MKVIEMNLNKNQICHISPD 209
L H ++D +N ++ D IG +K IE + D
Sbjct: 445 L----HRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 210 ISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNNYM-DS 268
+ KI A +I LN QQL Y Y+ D+
Sbjct: 500 FR-FLEQKIRHDSTAWNASGSI------------LNT---------LQQLKFYKPYICDN 537
Query: 269 ELQRSGLL 276
+ + L+
Sbjct: 538 DPKYERLV 545
Score = 43.7 bits (102), Expect = 4e-05
Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 102/292 (34%)
Query: 32 EGTIFVLKMGNSATKRHFETAKKTGVI----NLSHQGFKEF----------PDEMNELKA 77
+ IF L + N + V+ L +Q + ++ ++A
Sbjct: 181 DFKIFWLNLKNCNSPE--------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 78 VLRTL--------------DISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLE 123
LR L ++ K +L+ LL T + + L T
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILL--TTRFKQVTDFLSAATTTHI 289
Query: 124 KLENVSG---------------NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNL 168
L++ S +C ++LP + LS+ + N
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPR-RLSIIAESIRDGLATWDNW 347
Query: 169 QHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISP-DISEC-VRLKILRLEENCL 226
+H++ L+ +IE +LN + P + + RL + +
Sbjct: 348 KHVNCDKLT--------------TIIESSLN-----VLEPAEYRKMFDRLSVFPPSAH-- 386
Query: 227 AINAIPTCILTSSNVCTL--NVEGNLFEMKAFQQLDGYNNYMDSELQRSGLL 276
IPT +L + +V + + + ++L + L+
Sbjct: 387 ----IPTILL-----SLIWFDVIKSDVMV------------VVNKLHKYSLV 417
Score = 34.4 bits (78), Expect = 0.037
Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 55/197 (27%)
Query: 62 HQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGT 121
H +F E E + + DI F + FD ++ +PK I +
Sbjct: 3 HHHHMDF--ETGEHQYQYK--DILSVFEDAFVDN-----------FDCKDVQDMPKSILS 47
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFN-- 179
E+++++ + + + F L LS + + KF +VL +++
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTL-----LSKQEEMVQKFVE--------EVLRINYKFL 94
Query: 180 ----RIESI-PDGIGKMKVIEMN--LNKNQIC---HIS-PDISECVR--LKILRLEEN-- 224
+ E P + +M + + + N NQ+ ++S +R L LR +N
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 225 ----------CLAINAI 231
+A++
Sbjct: 155 IDGVLGSGKTWVALDVC 171
Score = 32.5 bits (73), Expect = 0.18
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 62 HQGFKEFPDEMNELKAVLRTLDIS--QNKISKFPLDLASYQLLKSLTFDQNKIES-LPKD 118
H E P+ M + V LD + KI + + + + + +
Sbjct: 480 HLKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
E+L N ++ LP L K+ L + L
Sbjct: 538 DPKYERLVN-----AILDFLPKIEENLICSKYTDLLRIALM 573
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 38.4 bits (90), Expect = 0.002
Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 39/239 (16%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISK-----FPLDLASYQLLKSLTFDQNKI- 112
L G + ++ L + ++ L + L+ L N +
Sbjct: 67 ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126
Query: 113 --------ESLPKDIGTLEKLENVSGNC---NLIKELPLSFSKLHNLKHLSLSQNQLNK- 160
E L LEKL + + L + K L++S N +N+
Sbjct: 127 DAGLQLLCEGLLDPQCRLEKL-QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185
Query: 161 -----FPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKMKVI-EMNLNKNQI-----C 204
+ + L+ L L + + + + E+ L N++
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 205 HISPDISEC-VRLKILRLEENCL---AINAIPTCILTSSNVCTLNVEGNLFEMKAFQQL 259
+ P + RL+ L + E + + + ++ L++ GN + + L
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304
Score = 38.0 bits (89), Expect = 0.002
Identities = 34/239 (14%), Positives = 80/239 (33%), Gaps = 39/239 (16%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKIS-----KFPLDLASYQLLKSLTFDQNKI- 112
+++ G + + + L L + ++ +AS L+ L NK+
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 113 --------ESLPKDIGTLEKLENVSGNC---NLIKELPLSFSKLHNLKHLSLSQNQLNK- 160
L L L + +L +LK LSL+ N+L
Sbjct: 241 DVGMAELCPGLLHPSSRLRTL-WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 161 -----FPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKMKVI-EMNLNKNQI-----C 204
T+L L+ L + + + + + E+ ++ N++
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359
Query: 205 HISPDISEC-VRLKILRLEENCL---AINAIPTCILTSSNVCTLNVEGNLFEMKAFQQL 259
+ + + L++L L + + + +++ +L + ++ L++ N QL
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418
Score = 36.5 bits (85), Expect = 0.007
Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 48/224 (21%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL------PKDIGTLEKLENVSGNC 132
L L++ N++ D+ + +L+ L KI+ L G L +
Sbjct: 58 LAELNLRSNELG----DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG-CGVLSSTLRTL 112
Query: 133 NLIKELPLSFSKLH----------------NLKHLSLSQNQLN-----KFPTVLFNLQHL 171
++EL LS + L L+ L L L+ +VL
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 172 DVLDLSFNRI-----ESIPDGIG--KMKVIEMNLNKNQI-----CHISPDISECVRLKIL 219
L +S N I + G+ ++ + L + + ++ L+ L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232
Query: 220 RLEENCL----AINAIPTCILTSSNVCTLNVEGNLFEMKAFQQL 259
L N L P + SS + TL + K L
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276
Score = 31.9 bits (73), Expect = 0.20
Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 40/183 (21%)
Query: 79 LRTLDISQNKISKFPLDLASYQL--LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
+++LDI ++S L + + D + + + + + +
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL----TEAR-CKDISSALRVNPALA 59
Query: 137 ELPLSFSKL----------------HNLKHLSLSQNQL-----NKFPTVLFNLQHLDVLD 175
EL L ++L ++ LSL L + L L L L
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 176 LSFNRI-----ESIPDGIGK--MKVIEMNLNKNQIC-----HISPDISECVRLKILRLEE 223
LS N + + + +G+ ++ ++ L + ++ + K L +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 224 NCL 226
N +
Sbjct: 180 NDI 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 50/289 (17%), Positives = 92/289 (31%), Gaps = 86/289 (29%)
Query: 4 LTEDFGWDPS-----SPSKLTLLLPGKKNRGLIEGTIFVLKM-------GNSATKRHFE- 50
+ +G+ +P LT+ G+K + + E M G T++ F+
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS---AMIFETIVDGKLKTEKIFKE 1709
Query: 51 -TAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP----LDLASYQLLKSL 105
T F E L T +Q P ++ A+++ LKS
Sbjct: 1710 INEHSTSYT---------FRSEKGLLS---AT-QFTQ------PALTLMEKAAFEDLKSK 1750
Query: 106 TFDQNKIE----SLPKDIGTLEKLEN-----VSGNCNLIKELPLSFSKLHNLKHL--SLS 154
SL G E ++ +S L +
Sbjct: 1751 GLIPADATFAGHSL----G-----EYAALASLADV--------MSIESLVEVVFYRGMTM 1793
Query: 155 QNQLNKFPTVLFNLQHLDV------LDLSFNRIESIPDGIGKM--KVIEM-NLN-KNQIC 204
Q + + N + + S ++ + + +GK ++E+ N N +NQ
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 205 HISPDIS--ECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251
+ D+ + V +L N + + I L S + VEG+LF
Sbjct: 1854 VAAGDLRALDTV-TNVL----NFIKLQKIDIIELQKS-LSLEEVEGHLF 1896
Score = 34.6 bits (79), Expect = 0.032
Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 76/219 (34%)
Query: 79 LRTLDISQNKIS-KFPLDLASY----QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCN 133
R L +S + + AS+ QL + F++ LP+ + +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQ--FNK----ILPEPTEGFAADDEPTTPA- 58
Query: 134 LIKELPLSFSKLHNLKHLS--LSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKM 191
EL F L ++S + +++ +F VL+L E+
Sbjct: 59 ---ELVGKF-----LGYVSSLVEPSKVGQF---------DQVLNLCLTEFEN---CY--- 95
Query: 192 KVIEMNLNKNQICH-------ISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTL 244
L N I H D + ++++ N I I+
Sbjct: 96 ------LEGNDI-HALAAKLLQENDTTLVKTKELIK--------NYITARIMAKRPF-DK 139
Query: 245 NVEGNLFE---------MKAF--QQLDGYNN-YMDSELQ 271
LF + F Q G + Y + EL+
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQ---GNTDDYFE-ELR 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 36.9 bits (85), Expect = 0.005
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTVLF----NLQHLDVLDLSFNRIESIPDGIGKM---- 191
L +++ + N+ + L N+ L L+LS NR+ + D + +
Sbjct: 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRL-DDMSSIVQKA 195
Query: 192 -KVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSN 240
+ +NL+ N++ E ++K L+LEE L N++ S
Sbjct: 196 PNLKILNLSGNELK----SERELDKIKGLKLEELWLDGNSLCDTFRDQST 241
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 36.6 bits (85), Expect = 0.007
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 26/114 (22%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNC---NLI 135
+ +LD+S N + + +L + N + SL N+ NC +
Sbjct: 198 VTSLDLSANLLG----LKSYAELAYIFSSIPNHVVSL-----------NLCLNCLHGPSL 242
Query: 136 KELPLSFSKLHNLKHLSLSQNQLNK--------FPTVLFNLQHLDVLDLSFNRI 181
+ L L L +L+ + L + + N+Q + ++D + I
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 28.1 bits (63), Expect = 3.4
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 19/100 (19%)
Query: 146 HNLKHLSLSQNQLNK------FPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKMK-- 192
H + L LS N L + L+LS N + + + + +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 193 VIEMNLNKNQI-----CHISPDISEC-VRLKILRLEENCL 226
V +NL+ N + + ++ + +L L N
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121
Score = 28.1 bits (63), Expect = 3.7
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 29/135 (21%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
NL E A + +L++S N + S +L++ L + SL
Sbjct: 33 NLYSISTVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSL--- 85
Query: 119 IGTLEKLENVSGN------CNLIKELPLSFSKLHNLKHLSLSQNQLNK------FPTVLF 166
N+SGN + + + L+ + L L N +
Sbjct: 86 --------NLSGNFLSYKSSDELVKT-LAAIPFT-ITVLDLGWNDFSSKSSSEFKQAFSN 135
Query: 167 NLQHLDVLDLSFNRI 181
+ L+L N +
Sbjct: 136 LPASITSLNLRGNDL 150
Score = 27.7 bits (62), Expect = 3.9
Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 27/150 (18%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-----LASYQLLKSLTFDQNKIE 113
L + + E + + + +L++ N + L+ S + L+++ D + ++
Sbjct: 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266
Query: 114 SLP-----------KDIGTLEKLENVSGN----------CNLIKELPLSFSKLHNLKHLS 152
++ +I + + + +G NLI+EL L
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILV-DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325
Query: 153 LSQNQLNKFPTVLFNLQHLDVLDLSFNRIE 182
+ + L L + +
Sbjct: 326 IFAQKHQTNIEDLNIPDELRESIQTCKPLL 355
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 34.9 bits (79), Expect = 0.024
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 131 NCNLIKELPLSFSK---LHNLKHLSLSQNQL-----NKFPTVLFNLQHLDVLDLSFNRI 181
+ + F + L L+ + +S L + ++HL +++ +N +
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 27.2 bits (59), Expect = 6.4
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 21/152 (13%)
Query: 96 LASYQLLKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLS 154
L + LL +L S+ K L+ LE +SG + S L NL+ L L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227
Query: 155 QNQLNK--------FPTVLFN--LQHLDVLDLSFNRI-----ESIPDGIGKMKVIEMNLN 199
+ F + +L L + E + ++ M+++
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287
Query: 200 KNQIC-----HISPDISECVRLKILRLEENCL 226
+ + + + LK + ++ N L
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 32.1 bits (73), Expect = 0.070
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 103 KSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLN 159
+ LT+ SLP + N + LP L L+ L N
Sbjct: 18 RGLTW-----ASLPTAFPVD--TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 32.8 bits (75), Expect = 0.10
Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 41/172 (23%)
Query: 79 LRTLDISQNKI-----SKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCN 133
LR++ +N++ ++ S++LL ++ QN I G +
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP--------------EGIEH 206
Query: 134 LIKELPLSFSKLHNLKHLSLSQNQLNK-----FPTVLFNLQHLDVLDLSFNRI-----ES 183
L+ E + LK L L N L + +L L L+ + +
Sbjct: 207 LLLEG---LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263
Query: 184 IPDGIGKM---KVIEMNLNKNQICHIS-PDISECVR-----LKILRLEENCL 226
+ D K+ + + L N+I + + + L L L N
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 30.8 bits (70), Expect = 0.47
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 34/141 (24%)
Query: 143 SKLHNLKHLSLSQNQLNKFPT-----------VLFNLQHLDVLDLSFNRI-----ESIPD 186
+ +L+ S + L L + LS N E + D
Sbjct: 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116
Query: 187 GIGKMKVI-EMNLNKNQI--------------CHISPDISECVRLKILRLEENCL---AI 228
+ K + + L+ N + ++ L+ + N L ++
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176
Query: 229 NAIPTCILTSSNVCTLNVEGN 249
+ + T+ + N
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQN 197
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 31.0 bits (71), Expect = 0.38
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 40 MGNSATKRHFETAKKTGVINLSHQGFKEF--PDEMNELKAVLRTLD 83
S R A++ G +NL QGF P + L+AV R L
Sbjct: 10 AKESIFPRMSGLAQRLGAVNLG-QGFPSNPPPPFL--LEAVRRALG 52
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 31.1 bits (71), Expect = 0.42
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 49 FETAKKTGVINLSHQGFKEF--PDEMNE-LKAVLRTLDISQN 87
+ A + +NL QGF ++ P L A + D N
Sbjct: 31 IQLAAQYKPLNLG-QGFPDYHAPKYALNALAAAANSPDPLAN 71
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 29.3 bits (66), Expect = 1.3
Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 40/183 (21%)
Query: 79 LRTLDISQNKISKFPLD--------LASYQLLKSLTFDQNKI-----ESLPKDIGTLEKL 125
LR L+++ +++ P+ + L + ++ +L KL
Sbjct: 74 LRQLNLAGVRMT--PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 126 ENVSGN------CNLIKELPLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVL 174
+ N C +++L L + + L LS N L L + L
Sbjct: 132 -GLQLNSLGPEACKDLRDL-LLHDQCQ-ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188
Query: 175 DLSFNRI-----ESIPDGIGKMKVI-EMNLNKNQI-----CHISPDISECVRLKILRLEE 223
L + E + + + + + E+N+ N ++ E L++L L
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248
Query: 224 NCL 226
N L
Sbjct: 249 NEL 251
Score = 27.8 bits (62), Expect = 4.3
Identities = 24/184 (13%), Positives = 69/184 (37%), Gaps = 22/184 (11%)
Query: 86 QNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKL 145
+ +++ + + L++ + K+ L + + +L + + S L
Sbjct: 12 RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVL 71
Query: 146 HNLKHLSLSQNQL--NKFPTVLFNLQH----LDVLDLSFNRI-----ESIPDGIGKMKVI 194
+L+ L+L+ ++ K V L LD ++L+ ++ ++ + +
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR-- 129
Query: 195 EMNLNKNQI-----CHISPDISE-CVRLKILRLEENCL---AINAIPTCILTSSNVCTLN 245
++ L N + + + ++ LRL N L + + + +++V L+
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189
Query: 246 VEGN 249
+
Sbjct: 190 LLHT 193
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 29.2 bits (66), Expect = 1.4
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 49 FETAKKTGVINLSHQGFKEF--PDEMNELKA 77
+ A V+NL QGF + P + E +
Sbjct: 17 TKLAADPSVVNLG-QGFPDISPPSYVKEELS 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 29.1 bits (65), Expect = 1.9
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 79 LRTLDISQN-KISKFPLDLASYQLLKSLTF-------DQNKIESLPKDIGTLEKLENVSG 130
L++L +++ + K L L+ L + L + ++L +SG
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272
Query: 131 NCNLIKE-LPLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLD 175
+ + LP +S L L+LS + K LQ L VLD
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 28.7 bits (63), Expect = 2.2
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 108 DQNKIESLPKDIGTLEKLENVSGNCNLIKELPL-SFSKLHNLKHLSLSQNQLNKFPTVLF 166
+ + L +E +SG + + L S S L+ + ++ +
Sbjct: 344 IRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYAL 403
Query: 167 NLQHLDVLDLSFNRIESIPDG 187
+ Q+L L +I G
Sbjct: 404 DNQNLRQLWDWSKHNLTITQG 424
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 49 FETAKKTGVINLSHQGFKEF--PDEMNE 74
+ A + V+NL QGF +F PD E
Sbjct: 22 VKLASEHDVVNLG-QGFPDFPPPDFAVE 48
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 52 AKKTGVINLSHQGFKEF--PDEMNELKAVLRTLDISQN 87
A + G +NL QGF + P +M L+A + N
Sbjct: 22 ATRIGAVNLG-QGFPDEDGPPKM--LQAAQDAIAGGVN 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 28.4 bits (63), Expect = 2.9
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK-- 136
L ++ + +I + + L+ SL +DIG EK N+ L +
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFC-----GGSLNEDIGMPEKYMNLVFPRKLCRLG 276
Query: 137 -------ELPLSFSKLHNLKHLSLSQNQL--NKFPTVLFNLQHLDVLDLS 177
E+P+ F ++ L L L T++ +L+VL+
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 28.3 bits (64), Expect = 3.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 52 AKKTGVINLSHQGFKEF--PDEMNELKAVLRTLDISQN 87
A++ INLS QGF +F P + + + + N
Sbjct: 27 AQQHQAINLS-QGFPDFDGPRYL--QERLAHHVAQGAN 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 26.8 bits (59), Expect = 8.9
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Query: 79 LRTLDISQ-NKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
L L++S ++ + +A + +++T + K++ L + C +
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQL--NLSGYRKNL-QKSDLSTLVRRCPNLVH 226
Query: 138 LPLS------------FSKLHNLKHLSLSQNQL--NKFPTVLFNLQHLDVLDLS 177
L LS F +L+ L+HLSLS+ + L + L L +
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,937,500
Number of extensions: 224463
Number of successful extensions: 3051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 350
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)