RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3567
(277 letters)
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 52.8 bits (126), Expect = 1e-09
Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELP 139
R L ++ ++ L L+ L N++ +LP + L LE + + N ++ +
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 140 LSFSKLHNLKHLSLSQNQLNKFPTV--LFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMN 197
+ L L+ L L N+L + + L + L +L+L N + ++ + +
Sbjct: 60 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118
Query: 198 LNK 200
++
Sbjct: 119 VSS 121
Score = 48.6 bits (115), Expect = 5e-08
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK 192
+ L +L + HL LS N+L P L L+ L+VL S N +E++ +
Sbjct: 8 KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR 66
Query: 193 VIEMNLNKNQICHISP--DISECVRLKILRLEENCLA 227
+ E+ L N++ + + C RL +L L+ N L
Sbjct: 67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103
Score = 45.9 bits (108), Expect = 4e-07
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 149 KHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISP 208
+ L L+ L L L + LDLS NR+ ++P + ++ +E+ +
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 209 DISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN 249
++ RL+ L L N L +A +++ + LN++GN
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100
Score = 39.7 bits (92), Expect = 5e-05
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
V++L+H+ + +L + LD+S N++ P LA+ + L+ L N +E++
Sbjct: 2 VLHLAHKDLTVLC-HLEQLLL-VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 117 KDIGTLEKLE-NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHL 171
E + N L L+L N L + + L +
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 52.1 bits (124), Expect = 5e-09
Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 6/144 (4%)
Query: 83 DISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSF 142
++ ++ + L ++ D + S P D+ ++ ++ L +
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIE 61
Query: 143 SKLHNLKHLSLSQNQLNK---FPTVLFNLQHLDVLDLSFNRIESIPDG--IGKMKVIEMN 197
+ L L+LS N+L + +++ +L +L+LS N ++S + I +K+ E+
Sbjct: 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121
Query: 198 LNKNQICHISPDISECVRLKILRL 221
L+ N + D S + R
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERF 145
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 54.1 bits (128), Expect = 5e-09
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
L+ L NK+ LP LE+L + N + E+P NLK L + N L +F
Sbjct: 286 LEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP---ELPQNLKQLHVEYNPLREF 339
Query: 162 PTVLFNLQHLDV 173
P + +++ L +
Sbjct: 340 PDIPESVEDLRM 351
Score = 52.9 bits (125), Expect = 1e-08
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 142 FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKN 201
+L+ L++S N+L + P + L+ L SFN + +P+ +K ++++ N
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEVPELPQNLK--QLHVEYN 334
Query: 202 QICHISPDISECVRLKI 218
+ L++
Sbjct: 335 PLREFPDIPESVEDLRM 351
Score = 52.1 bits (123), Expect = 2e-08
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
LE ++ + N + ELP L+ L S N L + P + NL+ L + +N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQ---LHVEYNPL 336
Query: 182 ESIPDGIGKMKVIEMN 197
PD ++ + MN
Sbjct: 337 REFPDIPESVEDLRMN 352
Score = 49.8 bits (117), Expect = 1e-07
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L++S NK+ + P L+ L N + +P+ L++L +V N ++E
Sbjct: 286 LEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQNLKQL-HVEYNP--LREF 339
Query: 139 PLSFSKLHNLK 149
P + +L+
Sbjct: 340 PDIPESVEDLR 350
Score = 46.0 bits (107), Expect = 2e-06
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHI 206
L L+ L+ P + +L+ L S N + +P+ +K + ++ N + +
Sbjct: 39 QAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSLKS--LLVDNNNLKAL 93
Score = 44.8 bits (104), Expect = 6e-06
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+N+S+ E P L+ L S N +++ P + LK L + N + P
Sbjct: 288 ELNVSNNKLIELPALPPRLE----RLIASFNHLAEVPELPQN---LKQLHVEYNPLREFP 340
Query: 117 KDIGTLEKL 125
++E L
Sbjct: 341 DIPESVEDL 349
Score = 44.0 bits (102), Expect = 9e-06
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 159 NKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKI 218
N+ ++ L+ L++S N++ +P +++ + + N + + LK
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL--IASFNHLAEVPELPQ---NLKQ 328
Query: 219 LRLEENCL 226
L +E N L
Sbjct: 329 LHVEYNPL 336
Score = 34.8 bits (78), Expect = 0.008
Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
+L ++ + LP +L+ L S N L + P + +L+ L + N +
Sbjct: 40 AHEL-ELNNLG--LSSLP---ELPPHLESLVASCNSLTELPELPQSLKS---LLVDNNNL 90
Query: 182 ESIPDGIGKMKVIEMNLNKNQICH 205
+++ D ++ + ++ N+ +
Sbjct: 91 KALSDLPPLLEYLGVSNNQLEKLP 114
Score = 34.4 bits (77), Expect = 0.013
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L+++ +S P L+SL N + LP+ + L+++ + N +K L
Sbjct: 40 AHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93
Query: 139 PLSFSKLHNLKH 150
L L
Sbjct: 94 SDLPPLLEYLGV 105
Score = 33.6 bits (75), Expect = 0.022
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+ L++ G P+ L +L S N +++ P S LKSL D N +++L
Sbjct: 42 ELELNNLGLSSLPELPPH----LESLVASCNSLTELPELPQS---LKSLLVDNNNLKALS 94
Query: 117 KDIGTL 122
L
Sbjct: 95 DLPPLL 100
Score = 30.2 bits (66), Expect = 0.27
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLK 103
+ S E P+ LK L + N + +FP S + L+
Sbjct: 308 RLIASFNHLAEVPELPQNLK----QLHVEYNPLREFPDIPESVEDLR 350
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 50.3 bits (119), Expect = 2e-08
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 133 NLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK 192
LI++ ++ + L L ++ + L D +D S N I + +
Sbjct: 6 ELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64
Query: 193 VIEMNLNKNQICHISPDISEC 213
+ + +N N+IC I + +
Sbjct: 65 LKTLLVNNNRICRIGEGLDQA 85
Score = 34.9 bits (79), Expect = 0.004
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 153 LSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE-MNLNKNQICHISPDIS 211
L+ + + N LDL +I I + + + ++ + N+I +
Sbjct: 3 LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFP 60
Query: 212 ECVRLKILRLEENC 225
RLK L + N
Sbjct: 61 LLRRLKTLLVNNNR 74
Score = 34.1 bits (77), Expect = 0.008
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 4/131 (3%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK 117
+ L+ + ++ N ++ R LD+ KI A+ ++ F N+I L
Sbjct: 1 VKLTAELIEQAAQYTNAVR--DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58
Query: 118 DIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLF--NLQHLDVLD 175
+ N + + L +L L L+ N L + + +L+ L L
Sbjct: 59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118
Query: 176 LSFNRIESIPD 186
+ N + +
Sbjct: 119 ILRNPVTNKKH 129
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 50.0 bits (118), Expect = 9e-08
Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 7/191 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPK-DIGTLEKLENVS-GNCNLIK 136
LR + S + K P DL L NKI + D L+ L + N + K
Sbjct: 12 LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEM 196
P +F+ L L+ L LS+NQL + P + L + N I + + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE--LRVHENEITKVRKSVFNGLNQMI 127
Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCIL-TSSNVCTLNVEGNLFEMKA 255
+ S I + +L +A I T ++ L+++GN
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187
Query: 256 FQQLDGYNNYM 266
L G NN
Sbjct: 188 AASLKGLNNLA 198
Score = 48.1 bits (113), Expect = 4e-07
Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 9/201 (4%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+ L + + L L +S+N++ + P + + L +N+I +
Sbjct: 59 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVR 116
Query: 117 KDI----GTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLD 172
K + + +E + +F + L ++ ++ + P L L
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLT 174
Query: 173 VLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKIL-RLEENCLAINAI 231
L L N+I + K L + + D L L N + +
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234
Query: 232 PTCILTSSNVCTLNVEGNLFE 252
P + + + + N
Sbjct: 235 PGGLADHKYIQVVYLHNNNIS 255
Score = 39.6 bits (91), Expect = 2e-04
Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIES-LPKDIGTLEKLENVS-GNCNLIK 136
L + I+ I+ P L L L D NKI + L L + ++
Sbjct: 152 LSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 137 ELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-------- 188
S + +L+ L L+ N+L K P L + +++ V+ L N I +I
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269
Query: 189 --GKMKVIEMNLNKNQICHISPDISECVRL 216
+ + N Q I P CV +
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299
Score = 31.9 bits (71), Expect = 0.063
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 16/118 (13%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+ LS + LR L ++ NK+ K P LA ++ ++ + N I ++
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL 174
+ P +K + +SL N + + + + V
Sbjct: 259 SND----------------FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 48.6 bits (114), Expect = 3e-07
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNR 180
N + LP ++L L L++S N L NLQ DV + N+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 34.0 bits (76), Expect = 0.014
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 114 SLPKDIGTLEKLE--NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
+LP+ + L+ L NVS N NL E+P L + + N+
Sbjct: 259 TLPQGLTQLKFLHSLNVSFN-NLCGEIP-QGGNLQRFDVSAYANNKC 303
Score = 32.8 bits (73), Expect = 0.034
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 146 HNLKHLSLSQNQLN-KFPTVLFNLQHLDVLDLSFNRIE-SIPDG 187
NL L L N++ P L L+ L L++SFN + IP G
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 28.6 bits (62), Expect = 0.80
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 67 EFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNK 111
P + +LK L +L++S N + + Q + NK
Sbjct: 259 TLPQGLTQLKF-LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 27.0 bits (58), Expect = 2.8
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 163 TVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL---NKNQICHISPDISECVRLKIL 219
T + + +LD+ L+ + IP + + + N + I P I++ +L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 220 RLEENC 225
+
Sbjct: 107 YITHTN 112
Score = 26.6 bits (57), Expect = 3.4
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 143 SKLHNLKHLSLSQNQLNK---FPTVLFNLQHLDVLDLSFNR---IESIPDGIGKMKVIEM 196
++ + + +L LS L K P+ L NL +L+ L + P ++ +
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNLF 251
+ + PD ++ + +P I + N+ + +GN
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 48.1 bits (113), Expect = 4e-07
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 5/148 (3%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L L ++ N++ LAS L L N+I +L + L KL + N I +
Sbjct: 221 LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 278
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNL 198
+ L L +L L++NQL + NL++L L L FN I I K+ +
Sbjct: 279 S-PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 336
Query: 199 NKNQICHISPDISECVRLKILRLEENCL 226
N++ + ++ + L N +
Sbjct: 337 ANNKVSDV-SSLANLTNINWLSAGHNQI 363
Score = 45.8 bits (107), Expect = 2e-06
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 24/144 (16%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIG------------------ 120
L LD++ N+IS L+ L L N+I ++ G
Sbjct: 243 LTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301
Query: 121 ---TLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
L+ L ++ N I ++ S L L+ L + N+++ + L NL +++ L
Sbjct: 302 PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAG 359
Query: 178 FNRIESIPDGIGKMKVIEMNLNKN 201
N+I + ++ ++ LN
Sbjct: 360 HNQISDLTPLANLTRITQLGLNDQ 383
Score = 38.1 bits (87), Expect = 7e-04
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
N I ++ L NL LSL+ NQL T L +L +L LDL+ N+I ++ G
Sbjct: 205 TNNQISDIT-PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGL 262
Query: 191 MKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGNL 250
K+ E+ L NQI +ISP L L E + I N+ L + N
Sbjct: 263 TKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318
Query: 251 FE 252
Sbjct: 319 IS 320
Score = 36.1 bits (82), Expect = 0.004
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
+S + L + L + + + L +L ++ S N++ I
Sbjct: 37 TVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDIT 82
Score = 28.0 bits (61), Expect = 1.3
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 166 FNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENC 225
L +L+ L + N+I I + E++LN NQ+ I ++ L L L N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ 252
Query: 226 L 226
+
Sbjct: 253 I 253
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 41.7 bits (96), Expect = 4e-05
Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 23/226 (10%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLP 116
+ QG + P + + + + N+IS P S++ ++LT L
Sbjct: 15 TTSCPQQGLQAVPVGIPAA---SQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLA 69
Query: 117 KDIGTLEKLE------NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPT-VLFNLQ 169
+ ++S N L P +F L L L L + L + + L
Sbjct: 70 RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129
Query: 170 HLDVLDLSFNRIESIPDGI--GKMKVIEMNLNKNQICHISPD-ISECVRLKILRLEENC- 225
L L L N ++++PD + + L+ N+I + L L L +N
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 226 -------LAINAIPTCILTSSNVCTLNVEGNLFEMKAFQQLDGYNN 264
+ +N + L ++A Q L +N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 34.4 bits (77), Expect = 0.012
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 4/150 (2%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESL-P 116
L + PD+ L L + N+IS P L L QN++ + P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 117 KDIGTLEKLENVSGNCNLIKEL-PLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLD 175
L +L + N + L + + L L++L L+ N L
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254
Query: 176 LSFNRIE-SIPDGIGKMKVIEMNLNKNQIC 204
S + + S+P + + + N Q C
Sbjct: 255 GSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284
Score = 26.3 bits (56), Expect = 4.4
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 149 KHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI 188
S Q L P + + L NRI +P
Sbjct: 14 VTTSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAAS 51
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 40.1 bits (92), Expect = 9e-05
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 1/139 (0%)
Query: 111 KIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQH 170
E + T + + G I+++ + S L KHL+LS N + K + L +++
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMEN 71
Query: 171 LDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLEENCLAINA 230
L +L L N I+ I + +E I + V L++L + N +
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131
Query: 231 IPTCILTSSNVCTLNVEGN 249
+ + L + GN
Sbjct: 132 EIDKLAALDKLEDLLLAGN 150
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 40.0 bits (92), Expect = 1e-04
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
+ L KL + + N I ++ + L NL + L NQ++ L N +L ++ L+
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225
Score = 31.9 bits (71), Expect = 0.058
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 142 FSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIP 185
+ L L L N+++ L +L +L + L N+I +
Sbjct: 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS 211
Score = 31.5 bits (70), Expect = 0.089
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI 181
L ++ + + + ++ + L + LS + + L +L L+L N+I
Sbjct: 18 LANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQI 75
Query: 182 ESIPDGIGKMKVIEMNLNKNQICH 205
+ K+ E+ L+ N + +
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKN 99
Score = 28.8 bits (63), Expect = 0.66
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 165 LFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRLKILRLE 222
L NL L L N+I I +IE++L NQI +SP ++ L I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225
Score = 28.8 bits (63), Expect = 0.67
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 145 LHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMK-VIEMNLNKNQI 203
L N ++ ++ + T +L + L + +I G+ + +I + L NQI
Sbjct: 18 LANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75
Query: 204 CHISP 208
++P
Sbjct: 76 TDLAP 80
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 39.3 bits (90), Expect = 3e-04
Identities = 15/49 (30%), Positives = 18/49 (36%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFN 179
N NL + + L NL L L +N L P F L L N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 35.1 bits (79), Expect = 0.006
Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 30/194 (15%)
Query: 58 INLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPL-DLASYQLLKSLTFDQNKIESLP 116
+N + P ++ + L +S+N + F L L Y L L D+ ++ L
Sbjct: 15 VNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 117 KDIGTLEKLENVSGNCNLIKELP--------------------LSFSKLHNLKHLSLSQN 156
D + L L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 157 QLNKFPTVLFNLQHLDVLDLSF-----NRIESIPDGIGKMKVIE-MNLNKNQICHISPDI 210
+ N+ T+ L N E + ++ ++ + L +N + I
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 211 SECVRLKILRLEEN 224
L L N
Sbjct: 192 FGSHLLPFAFLHGN 205
Score = 32.8 bits (73), Expect = 0.030
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 131 NCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGK 190
N L K + N +L L++LD L L N + +IP G
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 191 MKVIE-MNLNKNQI---CHISP 208
++ L+ N C I
Sbjct: 194 SHLLPFAFLHGNPWLCNCEILY 215
Score = 32.0 bits (71), Expect = 0.056
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 110 NKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN 159
N E + LE L+ + N + +P F H L L N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 31.6 bits (70), Expect = 0.079
Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 35/196 (17%)
Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKF 161
+ D+ + +LP D+ + ++S N L + L L+L
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLD-RAELTK 69
Query: 162 PTVLFNLQHLDVLDLSFNRIESIPDGIGKM-------------------------KVIEM 196
V L L LDLS N+++S+P + ++ E+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPTCILTSSNVCTLNVEGN------- 249
L N++ + P + N + N+ TL ++ N
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 250 -LFEMKAFQQLDGYNN 264
F + N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 38.9 bits (89), Expect = 3e-04
Identities = 15/99 (15%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLE--NVSGNCNLIKE 137
+TLD++ + Q + + ++ ++ + + +++ ++S + +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 138 LPLSFSKLHNLKHLSLSQNQLN-KFPTVLFNLQHLDVLD 175
L S+ L++LSL +L+ L +L L+
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
Score = 33.9 bits (76), Expect = 0.016
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 3/132 (2%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKI--ESLPKDIGTLEKLENVS-GNCNLI 135
+ ++ + + + S ++ + + I +L + KL+N+S L
Sbjct: 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84
Query: 136 KELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIE 195
+ + +K NL L+LS + L LD +
Sbjct: 85 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144
Query: 196 MNLNKNQICHIS 207
++S
Sbjct: 145 HVSETITQLNLS 156
Score = 29.7 bits (65), Expect = 0.32
Identities = 8/78 (10%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 146 HNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI--ESIPDGIGKMKVIE-MNLNKNQ 202
+ ++ +++ F+ + +DLS + I ++ + + ++ ++L +
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 203 ICHISPD-ISECVRLKIL 219
+ + +++ L L
Sbjct: 83 LSDPIVNTLAKNSNLVRL 100
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 38.7 bits (88), Expect = 4e-04
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 141 SFSKLHNLKHLSLSQNQLNKFPTVLF-NLQHLDVLDLSFNRIESIP 185
F L +S+ +++ P+ NL+ L ++ +P
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 31.0 bits (68), Expect = 0.11
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 164 VLFNLQHLDVLDLSFNRIESIPDGI 188
V +LD+S RI S+P
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYG 220
Score = 29.5 bits (64), Expect = 0.42
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 122 LEKLENVSGNCNLIKELPLS-FSKLHNLKHLSLSQNQLNKFPTV 164
+ + I LP L L+ S L K PT+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241
Score = 29.1 bits (63), Expect = 0.47
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDG 187
+ + ++++ + P+ L ++ L ++ I G
Sbjct: 9 SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG 47
Score = 27.6 bits (59), Expect = 1.5
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 102 LKSLTFDQNKIESLPKDI-GTLEKLENVSGNCNLIKELP 139
L + +I SLP L+KL + +K+LP
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLP 239
Score = 27.2 bits (58), Expect = 1.9
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 79 LRTLDISQNKISKFPLD-LASYQLLKSLTFDQNKIESLP 116
LDIS+ +I P L + + L++ + ++ LP
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 27.2 bits (58), Expect = 2.4
Identities = 6/37 (16%), Positives = 8/37 (21%), Gaps = 3/37 (8%)
Query: 57 VINLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFP 93
V E P + L L K+
Sbjct: 12 VFLCQESKVTEIPSD---LPRNAIELRFVLTKLRVIQ 45
Score = 26.4 bits (56), Expect = 3.9
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 80 RTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
R ++K+++ P DL L F K+ + K
Sbjct: 11 RVFLCQESKVTEIPSDLPRN--AIELRFVLTKLRVIQKG 47
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 37.9 bits (86), Expect = 8e-04
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 127 NVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNK-----FPTVLF-NLQHLDVLDLSFNR 180
+S S + L+ L L N++ TV+ + L L+L+ NR
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313
Query: 181 IESIPDGIGKMKVIEMNLNKNQI 203
D + +++ + + ++
Sbjct: 314 FSEEDDVVDEIREVFSTRGRGEL 336
Score = 36.4 bits (82), Expect = 0.003
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 147 NLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKMKVIE-MNLNK 200
+LK +++ VL + + LS N I + + I K +E +
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 201 NQICHISPDISEC 213
+ +I E
Sbjct: 69 IFTGRVKDEIPEA 81
Score = 34.9 bits (78), Expect = 0.008
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 133 NLIKELPLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLDLSFNRIESIPDG 187
K + + ++K + LS N + + + + L++ + S + D
Sbjct: 18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE 77
Query: 188 IGKM 191
I +
Sbjct: 78 IPEA 81
Score = 29.5 bits (64), Expect = 0.45
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 59 NLSHQGFKEFPDEMNELKAV-LRTLDISQNKISKFPLDLASYQL------LKSLTFDQNK 111
LS +G D ++L+ + L+TL + N+I + + L L + N+
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313
Query: 112 IESLPKDIGTLEKLENVSGNCNL 134
+ + ++ + G L
Sbjct: 314 FSEEDDVVDEIREVFSTRGRGEL 336
Score = 27.9 bits (60), Expect = 1.4
Identities = 9/84 (10%), Positives = 19/84 (22%), Gaps = 18/84 (21%)
Query: 79 LRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKEL 138
L+ I+ L +K + N I + L
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI------------------GTEAARWL 51
Query: 139 PLSFSKLHNLKHLSLSQNQLNKFP 162
+ + +L+ S +
Sbjct: 52 SENIASKKDLEIAEFSDIFTGRVK 75
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 37.6 bits (85), Expect = 0.001
Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 147 NLKHLSLSQNQLN--KFPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKMKVI-EMNL 198
+++ L + +L+ ++ +L LQ V+ L + + I + + E+NL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 199 NKNQICHIS-PDISECVRLKILRLEENCL 226
N++ + + + ++ ++++ L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 36.9 bits (83), Expect = 0.002
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLDL 176
++ L ++ L + + L L + L L L+L
Sbjct: 4 IQSL-DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 177 SFNRI 181
N +
Sbjct: 63 RSNEL 67
Score = 33.0 bits (73), Expect = 0.036
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 79 LRTLDISQNKISKFPLD--LASYQLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIK 136
+++LDI ++S L Q + + D + K
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE------------------ARCK 45
Query: 137 ELPLSFSKLHNLKHLSLSQNQLN 159
++ + L L+L N+L
Sbjct: 46 DISSALRVNPALAELNLRSNELG 68
Score = 32.6 bits (72), Expect = 0.042
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 62 HQGFKEFPDEMNELKAVLRTLDISQNKIS-----KFPLDLASYQLLKSLTFDQNKIESLP 116
G +E + + +VLR L ++ +S L + L+ L N +
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--- 410
Query: 117 KDIGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL 174
D G L+ +E+V L+++L L + S+ ++ + + L V+
Sbjct: 411 -DAGILQLVESVRQPGCLLEQL--------VLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 32.3 bits (71), Expect = 0.062
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 17/95 (17%)
Query: 142 FSKLHNLKHLSLSQNQLN-----KFPTVLFNLQHLDVLDLSFNRI-----ESIPDGIGKM 191
L+ L L+ ++ L L LDLS N + + + + +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 192 --KVIEMNLNKNQICHISPDISECVR-----LKIL 219
+ ++ L D + + L+++
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 31.5 bits (69), Expect = 0.10
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 135 IKELPLSFSKLHNLKHLSLSQNQLNK------FPTVLFNLQHLDVLDLSFNRIESIPDGI 188
L + H+L+ L LS N L +V L+ L L
Sbjct: 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW----SEE 441
Query: 189 GKMKVIEMNLNKNQICHIS 207
+ ++ + +K + IS
Sbjct: 442 MEDRLQALEKDKPSLRVIS 460
Score = 26.5 bits (56), Expect = 4.2
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESLPKD 118
++S + + LR LD+S N + D QL++S+ +E L
Sbjct: 380 DVSDSSCSSLAATLLANHS-LRELDLSNNCLG----DAGILQLVESVRQPGCLLEQL--- 431
Query: 119 IGTLEKLENVSGNCNLIKELPLSFSKLHNLKHLS 152
L ++ + + L +L+ +S
Sbjct: 432 -----VLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
Score = 26.1 bits (55), Expect = 5.8
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 59 NLSHQGFKEFPDEMNELKAVLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL 115
L+ K+ + A L L++ N++ D+ + +L+ L KI+ L
Sbjct: 38 GLTEARCKDISSALRVNPA-LAELNLRSNELG----DVGVHCVLQGLQTPSCKIQKL 89
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 36.1 bits (82), Expect = 0.002
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 141 SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLS 177
+ L L++L LS+N ++ L L++LDVL+L
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF 208
Score = 26.5 bits (57), Expect = 2.9
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQL 158
L ++ + N + IK + L N+ L L+ N+L
Sbjct: 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL 80
Score = 26.5 bits (57), Expect = 3.6
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 165 LFNLQHLDVLDLSFNRIESIP 185
L L L L LS N I +
Sbjct: 174 LAGLTKLQNLYLSKNHISDLR 194
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase
I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 30.5 bits (67), Expect = 0.24
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 37 VLKMGNSATKRHFETAKKTGVINLSHQGFKEF--PDEMNE-LKAVLRTLDISQNK 88
S + + A + +NL QGF ++ P L A + D N+
Sbjct: 8 YQGSTKSVWVEYIQLAAQYKPLNLG-QGFPDYHAPKYALNALAAAANSPDPLANQ 61
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 30.0 bits (66), Expect = 0.25
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 141 SFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVL 174
+ L L+ L +S N+++ VL L +L+ L
Sbjct: 167 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199
Score = 28.5 bits (62), Expect = 0.65
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 122 LEKLENVSGNCNLIKELPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFN 179
L + + + +S + L + L + + + L +L ++ S N
Sbjct: 17 LAEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN 72
Score = 27.3 bits (59), Expect = 1.7
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 145 LHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQIC 204
L L + + + +L + L I+SI DG+ + + N
Sbjct: 17 LAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 74
Query: 205 HISPDISEC 213
+
Sbjct: 75 TDITPLKNL 83
Score = 26.9 bits (58), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 165 LFNLQHLDVLDLSFNRIESIP 185
L NL L+ LD+S N++ I
Sbjct: 168 LANLTTLERLDISSNKVSDIS 188
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 29.0 bits (63), Expect = 0.34
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 3/118 (2%)
Query: 102 LKSLTFDQNKIESLPKDIGTLEKLENVS-GNCNLIKELP-LSFSKLHNLKHLSLSQNQLN 159
L ++ + E L + N ++ L L L++L++ ++ L
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 160 -KFPTVLFNLQHLDVLDLSFNRIESIPDGIGKMKVIEMNLNKNQICHISPDISECVRL 216
P L L+LSFN +ES+ + ++ + H S + R
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 28.4 bits (63), Expect = 0.94
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 46 KRHFETAKKTGVINLSHQGFKEFPDEMNELKAVLRTLDISQNKISK 91
F T + G+ + F DEM L+ Q
Sbjct: 289 LELFTTPVREGLRTCQRRPAFNFMDEMAWAATYHVLLEHFQPGDPD 334
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 27.5 bits (59), Expect = 1.6
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 3/157 (1%)
Query: 80 RTLDISQNKISKFPLDLASY--QLLKSLTFDQNKIESLPKDIGTLEKLENVSGNCNLIKE 137
T+D + + + P D+ + +LL + + N E
Sbjct: 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70
Query: 138 LPLSFSKLHNLKHLSLSQNQLNKFPTVLFNLQHLDVLDLSFNRIESIPDGI-GKMKVIEM 196
H + + L L L+L N+I + G + +
Sbjct: 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130
Query: 197 NLNKNQICHISPDISECVRLKILRLEENCLAINAIPT 233
+ + + ++ + A P+
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167
>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
[TaxId: 1392]}
Length = 297
Score = 26.6 bits (58), Expect = 3.5
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 64 GFKEFPDEMNELKA-----VLRTLDISQNKISKFPLDLASYQLLKSLTFDQNKIESL 115
G+K ++ + +L T + ++K K P ++LK+ TFD+ +E +
Sbjct: 238 GYKALHHIVHHPQLTHVPKILETPYVGEDKKDKKPPYKLEIEMLKNGTFDEGLLEKI 294
>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 245
Score = 25.1 bits (54), Expect = 9.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 191 MKV--IEMNLNKNQICHISP-DISECVRLKILRLEENCLAINA 230
M+ + N+ KN++ I P + + V + + R EEN +NA
Sbjct: 1 MRTGNLPANMKKNRVLQIIPYEFNR-VIIPVKRGEENTDYVNA 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 967,714
Number of extensions: 43791
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 103
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)