BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3569
         (228 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
           Inhibitor
 pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
           Inhibitor At 1.56 A Resolution
          Length = 223

 Score = 33.1 bits (74), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 147 VKCVYL-LLSAYQIRSGYPTRILGNFLCKNYNYLNKFLFKGFMMVPFVF--ELRALMDW 202
           ++C Y+ L+S  +    YP +I  N LC       K   +G    P V    LR L+ W
Sbjct: 134 IQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSW 192


>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
           Para-Amidobenzylanmine P1 Group Carry A High Binding
           Efficiency
 pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
           Kallikrein 6 Inhibitors With An Amidinothiophene P1
           Group
          Length = 223

 Score = 33.1 bits (74), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 147 VKCVYL-LLSAYQIRSGYPTRILGNFLCKNYNYLNKFLFKGFMMVPFVF--ELRALMDW 202
           ++C Y+ L+S  +    YP +I  N LC       K   +G    P V    LR L+ W
Sbjct: 134 IQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSW 192


>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
           Proneurosin
          Length = 223

 Score = 33.1 bits (74), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 147 VKCVYL-LLSAYQIRSGYPTRILGNFLCKNYNYLNKFLFKGFMMVPFVF--ELRALMDW 202
           ++C Y+ L+S  +    YP +I  N LC       K   +G    P V    LR L+ W
Sbjct: 135 IQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSW 193


>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
 pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex
          With Amppcp
 pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
          S.Pombe.
 pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
          With Serine
          Length = 323

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 50 FLCKNYNYLNKFLFKGSLFPFSYISQAQ 77
          F C+N+  +  F F+G+L   S +++AQ
Sbjct: 45 FKCENFQKMGAFKFRGALNALSQLNEAQ 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.145    0.495 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,888,957
Number of Sequences: 62578
Number of extensions: 265887
Number of successful extensions: 507
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 8
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.9 bits)