Query psy3569
Match_columns 228
No_of_seqs 141 out of 157
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:59:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1893|consensus 100.0 5.4E-49 1.2E-53 389.3 5.7 225 2-228 304-537 (861)
2 KOG1893|consensus 97.7 3E-05 6.5E-10 79.0 4.3 76 10-96 440-515 (861)
3 KOG3012|consensus 50.1 40 0.00087 30.4 5.5 75 138-212 163-254 (259)
4 PF05216 UNC-50: UNC-50 family 48.2 11 0.00025 33.7 1.8 58 138-195 138-196 (231)
5 PF15114 UPF0640: Uncharacteri 31.9 26 0.00056 25.8 1.2 22 184-205 21-42 (69)
6 PF11475 VP_N-CPKC: Virion pro 28.0 15 0.00032 22.7 -0.5 10 154-163 22-31 (32)
7 PF01506 HCV_NS5a: Hepatitis C 22.3 25 0.00053 20.5 -0.3 11 196-206 4-14 (23)
8 PF08172 CASP_C: CASP C termin 21.2 1E+02 0.0022 27.7 3.3 17 113-129 223-239 (248)
9 PF08333 DUF1725: Protein of u 19.8 61 0.0013 18.3 1.0 11 211-221 4-14 (20)
10 cd01240 PH_beta-ARK Beta adren 13.6 1.1E+02 0.0024 24.7 1.4 15 153-167 16-32 (116)
No 1
>KOG1893|consensus
Probab=100.00 E-value=5.4e-49 Score=389.26 Aligned_cols=225 Identities=44% Similarity=0.782 Sum_probs=212.2
Q ss_pred CccchhhhhcccccccchhHHHHH-HHHHHHHHhhhhhhcCCcceehhHHHHHHHHHHHHHHhhccccc--------ccc
Q psy3569 2 NEPRCQIKRNKQFNAAVYPQIWYW-VKCVYLLLSAYQIRSGYPTRILGNFLCKNYNYLNKFLFKGSLFP--------FSY 72 (228)
Q Consensus 2 ~~~~~~~~~~r~f~~~~~~qi~~~-ik~Ff~~L~~~q~r~~~~D~Y~~~Fl~d~~~fi~~~lF~~~~f~--------~~~ 72 (228)
+++++...+.+-++.+..+.-+-+ ..+||+.+.+++. +...|.|+-||++|.++|++ +.||+||+| .++
T Consensus 304 ~~l~~~~~~~~v~~~~~~~~~~~~~l~rFf~~~~h~~~-~~~~d~y~~mf~~d~V~fLi-I~fg~sAfg~~sa~ddi~~~ 381 (861)
T KOG1893|consen 304 EYLTEVWSDSKVFCESLEREQYSESLWRFFYVLIHTKY-RAITDVYALMFLNDLVNFLI-ILFGFSAFGEQSAADDILSS 381 (861)
T ss_pred hhcccccchhhhhhcchhhhhcCccccchhhheechhh-hhHHHHHHHHHhhhhheeeE-EeeeeecccccccchhHHhh
Confidence 455555666666777776666666 8889999999998 88999999999999999999 999999999 578
Q ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhheeccccccccccchhHHHHHHHHHHHH
Q psy3569 73 ISQAQVPVPFLVMLILQFALIVVDRTLYLRKFILGKIVFQFLLVFGVHAWMFFILPAVTERQFNAAVYPQIWYWVKCVYL 152 (228)
Q Consensus 73 ~~en~vP~~fv~~ll~~f~~iv~DR~lYL~k~~~~K~i~~~~~~~~~h~~~ff~lp~~t~~~f~~n~~~~~~y~~k~~yl 152 (228)
++|+++|.+|+.|++.||..|++||++|+||.+.+|+++|+.++.++|+|||+++|++|+|.|++|..++++|+.||+|+
T Consensus 382 ~se~~~p~pfl~m~~~qf~~~~idral~~rk~~~nk~~~~~~l~~~ihl~~ffv~p~vt~r~f~~n~~~i~l~~~k~~~~ 461 (861)
T KOG1893|consen 382 LSESRVPLPFLRMLLIQFLIIVIDRALYLRKGVVNKLIFNVSLVEGIHLWMFFVLPAVTERLFNSNVVAIALYFIKIVYF 461 (861)
T ss_pred hhhccCcchHHHHHHHHHHHHhHHHHHHhhhhhccceeeehhhHHHhhHHHhhhhhhhheecccchhhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcccccccccccchhhHHHHhHhhhhhhHHHHhhhhceecccccccHHHHHhHHHHHhhhhccC
Q psy3569 153 LLSAYQIRSGYPTRILGNFLCKNYNYLNKFLFKGFMMVPFVFELRALMDWMWTDTSMTLWDWLKMEDIYAHIFQLK 228 (228)
Q Consensus 153 ~lSa~Qir~GYP~~~~~n~l~~~~~~~~~~~f~~y~~iPFL~ELR~vlDW~~t~TsL~l~~W~klEdi~~~lf~~k 228 (228)
.+||+|||+|||++.+||++|++|+..|..+|++|+++||+.|||+++||+||||+++++||+++||+|++++.+|
T Consensus 462 ~~sayqi~~gyp~~~ign~lt~~~~~~n~~~f~~f~~ipfl~el~~~~~wv~~Dtt~s~~dw~~~~d~ya~i~~i~ 537 (861)
T KOG1893|consen 462 LQSAYQIRCGYPERSIGNFLTKSYGHLNHFIFSVFMLIPFLLELRTIIDWVWIDTTKSLFDWFPVEDIYAHIQLIK 537 (861)
T ss_pred HHHHHHHHhcCcHHhhhhhhhhhcchHHHHHHHhhccchHHHHHHHHHhheeeeeeeeccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG1893|consensus
Probab=97.71 E-value=3e-05 Score=78.99 Aligned_cols=76 Identities=43% Similarity=0.787 Sum_probs=66.6
Q ss_pred hcccccccchhHHHHHHHHHHHHHhhhhhhcCCcceehhHHHHHHHHHHHHHHhhcccccccccccCCccHHHHHHHHHH
Q psy3569 10 RNKQFNAAVYPQIWYWVKCVYLLLSAYQIRSGYPTRILGNFLCKNYNYLNKFLFKGSLFPFSYISQAQVPVPFLVMLILQ 89 (228)
Q Consensus 10 ~~r~f~~~~~~qi~~~ik~Ff~~L~~~q~r~~~~D~Y~~~Fl~d~~~fi~~~lF~~~~f~~~~~~en~vP~~fv~~ll~~ 89 (228)
.+|.|+.+..+++++.+||+|..++++|+|||+|.+.++|+++|.+++.++++|+.... .+|++-+.+.
T Consensus 440 t~r~f~~n~~~i~l~~~k~~~~~~sayqi~~gyp~~~ign~lt~~~~~~n~~~f~~f~~-----------ipfl~el~~~ 508 (861)
T KOG1893|consen 440 TERLFNSNVVAIALYFIKIVYFLQSAYQIRCGYPERSIGNFLTKSYGHLNHFIFSVFML-----------IPFLLELRTI 508 (861)
T ss_pred heecccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhhhhhhhcchHHHHHHHhhcc-----------chHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999986665 5666666666
Q ss_pred HHHHHHH
Q psy3569 90 FALIVVD 96 (228)
Q Consensus 90 f~~iv~D 96 (228)
+.++-.|
T Consensus 509 ~~wv~~D 515 (861)
T KOG1893|consen 509 IDWVWID 515 (861)
T ss_pred Hhheeee
Confidence 6666666
No 3
>KOG3012|consensus
Probab=50.11 E-value=40 Score=30.42 Aligned_cols=75 Identities=20% Similarity=0.428 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhccCCccccccc-ccccchhhHHHHhHhhhhhhH----------------HHHhhhh
Q psy3569 138 AVYPQIWYWVKCVYLLLSAYQIRSGYPTRILGNFL-CKNYNYLNKFLFKGFMMVPFV----------------FELRALM 200 (228)
Q Consensus 138 n~~~~~~y~~k~~yl~lSa~Qir~GYP~~~~~n~l-~~~~~~~~~~~f~~y~~iPFL----------------~ELR~vl 200 (228)
|...-++-++..+-+.++-+-.+.|+=...+||.+ .-.-+.-.++-|-||.++||| +-++...
T Consensus 163 NsFfp~lvlLyvIq~fl~plI~~~~fIslllgNtl~lva~~yY~ylTFlGY~~LPfLknt~~~L~Pi~~~~il~~isl~~ 242 (259)
T KOG3012|consen 163 NSFFPMLVLLYVIQLFLLPLILTDNFISLLLGNTLWLVAAGYYVYLTFLGYNALPFLKNTVFLLYPIPPLFILYLLSLAL 242 (259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHhhHhheeeeeccccchhhhcceeeeechHHHHHHHHHHHhc
Confidence 44444444555566667778888888888888876 355566667778999999998 4556667
Q ss_pred ceecccccccHH
Q psy3569 201 DWMWTDTSMTLW 212 (228)
Q Consensus 201 DW~~t~TsL~l~ 212 (228)
-|-.|.|-.+.+
T Consensus 243 gwn~~~~l~~fY 254 (259)
T KOG3012|consen 243 GWNFTKTLVNFY 254 (259)
T ss_pred cccchhhHHHHH
Confidence 777777655543
No 4
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=48.17 E-value=11 Score=33.67 Aligned_cols=58 Identities=17% Similarity=0.387 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhccCCcccccccc-cccchhhHHHHhHhhhhhhHHH
Q psy3569 138 AVYPQIWYWVKCVYLLLSAYQIRSGYPTRILGNFLC-KNYNYLNKFLFKGFMMVPFVFE 195 (228)
Q Consensus 138 n~~~~~~y~~k~~yl~lSa~Qir~GYP~~~~~n~l~-~~~~~~~~~~f~~y~~iPFL~E 195 (228)
|....++-++.++.+.++-.=.+.|......||.+- -+.+.-.++-|-||.++|||..
T Consensus 138 NaFfp~~~~Lyv~Q~~LlP~l~~~~~~~~~~gNtLy~va~~yY~YiTFLGY~~LPFL~~ 196 (231)
T PF05216_consen 138 NAFFPLFVLLYVLQFFLLPLLLKPSFLSLLLGNTLYLVAIGYYFYITFLGYSALPFLKN 196 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccchHHHHHhHHHHHHHHHHHHHHHHHhhccCchhhc
Confidence 566677777788888888888899999999999883 6667778888999999999953
No 5
>PF15114 UPF0640: Uncharacterised protein family UPF0640
Probab=31.92 E-value=26 Score=25.78 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=19.5
Q ss_pred HhHhhhhhhHHHHhhhhceecc
Q psy3569 184 FKGFMMVPFVFELRALMDWMWT 205 (228)
Q Consensus 184 f~~y~~iPFL~ELR~vlDW~~t 205 (228)
|..||.+|+.+-|=..|+|+..
T Consensus 21 fG~YRFLP~FF~lGaalE~~MI 42 (69)
T PF15114_consen 21 FGIYRFLPLFFVLGAALEWSMI 42 (69)
T ss_pred cchhhhhHHHHHhhhhheEEEE
Confidence 5689999999999999999854
No 6
>PF11475 VP_N-CPKC: Virion protein N terminal domain ; InterPro: IPR021573 This is the N-terminal domain of a family of virion proteins which contains a zinc finger domain. Currently no function is known. ; PDB: 2BAI_A.
Probab=27.96 E-value=15 Score=22.74 Aligned_cols=10 Identities=50% Similarity=0.747 Sum_probs=6.2
Q ss_pred HHHHHhhhcc
Q psy3569 154 LSAYQIRSGY 163 (228)
Q Consensus 154 lSa~Qir~GY 163 (228)
.||+|-|+|+
T Consensus 22 csalqyrngf 31 (32)
T PF11475_consen 22 CSALQYRNGF 31 (32)
T ss_dssp HH-SSSTT--
T ss_pred hhHhhhhccc
Confidence 5899999996
No 7
>PF01506 HCV_NS5a: Hepatitis C virus non-structural 5a protein membrane anchor; InterPro: IPR002868 The molecular function of the non-structural 5a viral protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA-dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1R7F_A 1R7E_A 1R7C_A 1R7G_A 1R7D_A.
Probab=22.32 E-value=25 Score=20.53 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.6
Q ss_pred Hhhhhceeccc
Q psy3569 196 LRALMDWMWTD 206 (228)
Q Consensus 196 LR~vlDW~~t~ 206 (228)
||.+-||+|+-
T Consensus 4 l~diWdWvc~~ 14 (23)
T PF01506_consen 4 LWDIWDWVCRV 14 (23)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888998863
No 8
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.17 E-value=1e+02 Score=27.68 Aligned_cols=17 Identities=35% Similarity=0.802 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhheecc
Q psy3569 113 FLLVFGVHAWMFFILPA 129 (228)
Q Consensus 113 ~~~~~~~h~~~ff~lp~ 129 (228)
++..+++|+++|+.+-.
T Consensus 223 ~~Y~l~LH~lvf~~l~~ 239 (248)
T PF08172_consen 223 FFYCLGLHLLVFFVLYY 239 (248)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777899999988764
No 9
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=19.80 E-value=61 Score=18.33 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=8.5
Q ss_pred HHHHHhHHHHH
Q psy3569 211 LWDWLKMEDIY 221 (228)
Q Consensus 211 l~~W~klEdi~ 221 (228)
..-|+.+|+|-
T Consensus 4 ~~kWmeLE~Ii 14 (20)
T PF08333_consen 4 AGKWMELENII 14 (20)
T ss_pred HHHHHHHHHHH
Confidence 35699999983
No 10
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=13.65 E-value=1.1e+02 Score=24.66 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=13.3
Q ss_pred HHHHHHhhhc--cCCcc
Q psy3569 153 LLSAYQIRSG--YPTRI 167 (228)
Q Consensus 153 ~lSa~Qir~G--YP~~~ 167 (228)
.+|++|=|++ ||.|+
T Consensus 16 Fls~WQ~Ry~~LfPNRL 32 (116)
T cd01240 16 FLSQWQTRYFKLYPNRL 32 (116)
T ss_pred HHHHHHHHHheeCccee
Confidence 5899999999 89885
Done!