Query psy3569
Match_columns 228
No_of_seqs 141 out of 157
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 20:00:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r7c_A Genome polyprotein; mem 23.0 15 0.00051 22.1 -0.3 20 196-216 5-24 (31)
2 3arc_I Photosystem II reaction 9.4 3.2E+02 0.011 17.0 3.1 29 106-134 3-31 (38)
3 1xrd_A LH-1, light-harvesting 9.3 2.3E+02 0.0079 18.8 2.7 23 81-103 21-43 (52)
4 2ljb_A M2 protein, BM2 protein 8.7 3.8E+02 0.013 16.2 3.3 20 84-103 15-34 (35)
5 3ol3_A Putative uncharacterize 8.0 1.1E+02 0.0037 23.2 0.7 9 159-167 20-28 (107)
6 2kvc_A Putative uncharacterize 7.6 1.2E+02 0.004 22.9 0.7 9 159-167 15-23 (103)
7 2m0n_A Putative uncharacterize 7.5 1E+02 0.0035 23.6 0.4 9 159-167 17-25 (112)
8 3e1k_B Lactose regulatory prot 6.9 1.7E+02 0.0058 16.0 0.9 11 216-226 9-19 (22)
9 3bts_E Regulatory protein GAL4 6.4 1.9E+02 0.0065 16.4 1.0 11 216-226 7-17 (26)
10 2lky_A Uncharacterized protein 6.2 1.5E+02 0.0052 22.6 0.7 9 159-167 17-25 (112)
No 1
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=22.98 E-value=15 Score=22.10 Aligned_cols=20 Identities=40% Similarity=0.807 Sum_probs=13.1
Q ss_pred HhhhhceecccccccHHHHHh
Q psy3569 196 LRALMDWMWTDTSMTLWDWLK 216 (228)
Q Consensus 196 LR~vlDW~~t~TsL~l~~W~k 216 (228)
||.+-||+||-=| |...|+|
T Consensus 5 L~~iwdWvctvLs-DfktWlk 24 (31)
T 1r7c_A 5 LRDIWDWICEVLS-DFKTWLK 24 (31)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 7889999997432 4444544
No 2
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=9.40 E-value=3.2e+02 Score=16.96 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHhheeccccccc
Q psy3569 106 LGKIVFQFLLVFGVHAWMFFILPAVTERQ 134 (228)
Q Consensus 106 ~~K~i~~~~~~~~~h~~~ff~lp~~t~~~ 134 (228)
.-|+..+.+..+.+-+++|-++++-..|.
T Consensus 3 tLKi~Vy~vV~ffvsLFiFGfLsnDP~RN 31 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFVFGFLSGDPARN 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGCS
T ss_pred eEEeeehhHHHHHHHHHHccccCCCCCCC
Confidence 45777777777777888888887766653
No 3
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=9.31 E-value=2.3e+02 Score=18.76 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy3569 81 PFLVMLILQFALIVVDRTLYLRK 103 (228)
Q Consensus 81 ~fv~~ll~~f~~iv~DR~lYL~k 103 (228)
-++++++++|++.-.||.=.|..
T Consensus 21 l~vlAl~IHfilLSt~~fNWl~~ 43 (52)
T 1xrd_A 21 LFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhccCCcccccC
Confidence 46788999999999999766643
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=8.66 E-value=3.8e+02 Score=16.23 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy3569 84 VMLILQFALIVVDRTLYLRK 103 (228)
Q Consensus 84 ~~ll~~f~~iv~DR~lYL~k 103 (228)
+.=+.++++-++||....++
T Consensus 15 IigiLHlilWildrLff~kr 34 (35)
T 2ljb_A 15 IIGILHFIAWTIGHLNQIKR 34 (35)
T ss_dssp HHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHHHhhhhHhhhc
Confidence 34455778888999887653
No 5
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=8.05 E-value=1.1e+02 Score=23.23 Aligned_cols=9 Identities=33% Similarity=1.018 Sum_probs=7.6
Q ss_pred hhhccCCcc
Q psy3569 159 IRSGYPTRI 167 (228)
Q Consensus 159 ir~GYP~~~ 167 (228)
+|-|||+.+
T Consensus 20 LRaGYPeGV 28 (107)
T 3ol3_A 20 LHKGYPEGV 28 (107)
T ss_dssp HHHHCTTCB
T ss_pred HHccCCCCC
Confidence 599999975
No 6
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=7.59 E-value=1.2e+02 Score=22.94 Aligned_cols=9 Identities=56% Similarity=1.239 Sum_probs=7.6
Q ss_pred hhhccCCcc
Q psy3569 159 IRSGYPTRI 167 (228)
Q Consensus 159 ir~GYP~~~ 167 (228)
+|-|||+.+
T Consensus 15 LRaGYP~GV 23 (103)
T 2kvc_A 15 LRAGYPEGI 23 (103)
T ss_dssp HHHHCTTCC
T ss_pred HHccCCCCC
Confidence 699999975
No 7
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=7.51 E-value=1e+02 Score=23.56 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=7.4
Q ss_pred hhhccCCcc
Q psy3569 159 IRSGYPTRI 167 (228)
Q Consensus 159 ir~GYP~~~ 167 (228)
+|-|||+.+
T Consensus 17 LRAGYPeGV 25 (112)
T 2m0n_A 17 QGPGSPEGV 25 (112)
T ss_dssp CTTSSCCSC
T ss_pred HhccCCCCC
Confidence 589999874
No 8
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=6.94 E-value=1.7e+02 Score=15.99 Aligned_cols=11 Identities=45% Similarity=0.972 Sum_probs=8.5
Q ss_pred hHHHHHhhhhc
Q psy3569 216 KMEDIYAHIFQ 226 (228)
Q Consensus 216 klEdi~~~lf~ 226 (228)
.|+|+|..+|.
T Consensus 9 tmddvynylfd 19 (22)
T 3e1k_B 9 TMDDVYNYIFD 19 (26)
T ss_pred cHHHHHHHhcc
Confidence 57888888874
No 9
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=6.41 E-value=1.9e+02 Score=16.37 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=8.4
Q ss_pred hHHHHHhhhhc
Q psy3569 216 KMEDIYAHIFQ 226 (228)
Q Consensus 216 klEdi~~~lf~ 226 (228)
.|+|+|.-+|.
T Consensus 7 TMDDvyNylFd 17 (26)
T 3bts_E 7 TMDDVYNYLFD 17 (26)
T ss_pred cHHHHHHHhcC
Confidence 47888888774
No 10
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=6.18 E-value=1.5e+02 Score=22.60 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=7.5
Q ss_pred hhhccCCcc
Q psy3569 159 IRSGYPTRI 167 (228)
Q Consensus 159 ir~GYP~~~ 167 (228)
+|-|||+.+
T Consensus 17 LRAGYP~GV 25 (112)
T 2lky_A 17 LNAGYPEGV 25 (112)
T ss_dssp HHHHCSSCC
T ss_pred HHccCCCCC
Confidence 599999975
Done!