Query psy3569
Match_columns 228
No_of_seqs 141 out of 157
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 20:00:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2baia1 g.87.1.1 (A:1-32) Poly 19.6 7 0.00051 21.7 -0.8 10 154-163 22-31 (32)
2 d1xrda1 f.3.1.1 (A:1-52) Light 13.2 68 0.0049 19.8 2.7 22 81-102 21-42 (52)
3 d1smye_ a.143.1.1 (E:) RNA pol 10.0 51 0.0037 22.5 1.3 14 155-168 25-39 (95)
4 d1eysh2 f.23.10.1 (H:7-43) Pho 8.3 1.3E+02 0.0092 17.2 2.5 12 154-165 24-35 (37)
5 d1hnfa2 b.1.1.3 (A:105-182) CD 6.8 52 0.0038 22.0 0.2 12 199-210 6-17 (78)
6 d2r85a1 c.30.1.8 (A:1-99) 5-fo 5.4 80 0.0058 21.9 0.6 8 155-162 12-19 (99)
7 d1ccza2 b.1.1.3 (A:94-171) CD2 5.4 70 0.0051 21.2 0.2 12 199-210 7-18 (78)
8 d2pbza1 c.30.1.8 (A:4-99) 5-fo 5.3 82 0.006 21.7 0.6 8 155-162 9-16 (96)
9 d2jeka1 a.255.1.1 (A:6-145) Hy 5.2 70 0.0051 23.5 0.1 12 122-133 32-43 (140)
10 d2r7ka1 c.30.1.8 (A:1-123) 5-f 4.7 95 0.0069 22.3 0.6 8 155-162 28-35 (123)
No 1
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=19.57 E-value=7 Score=21.73 Aligned_cols=10 Identities=50% Similarity=0.747 Sum_probs=8.5
Q ss_pred HHHHHhhhcc
Q psy3569 154 LSAYQIRSGY 163 (228)
Q Consensus 154 lSa~Qir~GY 163 (228)
.||+|-|+|+
T Consensus 22 csalqyrngf 31 (32)
T d2baia1 22 CSALQYRNGF 31 (32)
T ss_dssp HHCSSSTTCC
T ss_pred hhHHHhhccC
Confidence 5899999986
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=13.22 E-value=68 Score=19.78 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3569 81 PFLVMLILQFALIVVDRTLYLR 102 (228)
Q Consensus 81 ~fv~~ll~~f~~iv~DR~lYL~ 102 (228)
-++++++++|+++-.||.=.+.
T Consensus 21 L~~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 21 LFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcccccc
Confidence 4678899999999999976654
No 3
>d1smye_ a.143.1.1 (E:) RNA polymerase omega subunit {Thermus thermophilus [TaxId: 274]}
Probab=9.95 E-value=51 Score=22.50 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=10.8
Q ss_pred HHHH-hhhccCCccc
Q psy3569 155 SAYQ-IRSGYPTRIL 168 (228)
Q Consensus 155 Sa~Q-ir~GYP~~~~ 168 (228)
-|.| +|+|.|..++
T Consensus 25 RA~QlLr~g~~ntvL 39 (95)
T d1smye_ 25 RAQQLLRHGFKNTVL 39 (95)
T ss_dssp HHHHHHHTCTTCCSC
T ss_pred HHHHHHHcCCCcccc
Confidence 3889 9999995543
No 4
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=8.32 E-value=1.3e+02 Score=17.18 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=8.3
Q ss_pred HHHHHhhhccCC
Q psy3569 154 LSAYQIRSGYPT 165 (228)
Q Consensus 154 lSa~Qir~GYP~ 165 (228)
+.-=--|.|||-
T Consensus 24 L~rE~~REGyPl 35 (37)
T d1eysh2 24 LRREDKREGYPL 35 (37)
T ss_dssp HHHHTTSSSCSC
T ss_pred HHhcccccCCCC
Confidence 444556889995
No 5
>d1hnfa2 b.1.1.3 (A:105-182) CD2, second domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.84 E-value=52 Score=22.00 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=10.0
Q ss_pred hhceeccccccc
Q psy3569 199 LMDWMWTDTSMT 210 (228)
Q Consensus 199 vlDW~~t~TsL~ 210 (228)
.++|.||.++++
T Consensus 6 ~I~w~Ctn~tlt 17 (78)
T d1hnfa2 6 KISWTCINTTLT 17 (78)
T ss_dssp EEEEETTTTEEE
T ss_pred eeeEEecCcEEE
Confidence 478999999875
No 6
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=5.41 E-value=80 Score=21.87 Aligned_cols=8 Identities=63% Similarity=0.659 Sum_probs=6.3
Q ss_pred HHHHhhhc
Q psy3569 155 SAYQIRSG 162 (228)
Q Consensus 155 Sa~Qir~G 162 (228)
||+||-.|
T Consensus 12 SALqI~~G 19 (99)
T d2r85a1 12 SALQILKG 19 (99)
T ss_dssp THHHHHHH
T ss_pred hHHHHhcc
Confidence 78898765
No 7
>d1ccza2 b.1.1.3 (A:94-171) CD2-binding domain of CD58, second domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=70 Score=21.24 Aligned_cols=12 Identities=17% Similarity=0.689 Sum_probs=10.0
Q ss_pred hhceeccccccc
Q psy3569 199 LMDWMWTDTSMT 210 (228)
Q Consensus 199 vlDW~~t~TsL~ 210 (228)
.++|.|+.+||+
T Consensus 7 ~Isw~C~N~tlt 18 (78)
T d1ccza2 7 MIYWECSNATLT 18 (78)
T ss_dssp EEEEETTTTEEE
T ss_pred eeeEEecCcEEE
Confidence 478999999886
No 8
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=5.33 E-value=82 Score=21.71 Aligned_cols=8 Identities=50% Similarity=0.513 Sum_probs=6.4
Q ss_pred HHHHhhhc
Q psy3569 155 SAYQIRSG 162 (228)
Q Consensus 155 Sa~Qir~G 162 (228)
||+||-.|
T Consensus 9 SALqI~~G 16 (96)
T d2pbza1 9 SSLQILLG 16 (96)
T ss_dssp THHHHHHH
T ss_pred hHHHHhcc
Confidence 78998766
No 9
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.21 E-value=70 Score=23.54 Aligned_cols=12 Identities=33% Similarity=1.115 Sum_probs=10.2
Q ss_pred HHhheecccccc
Q psy3569 122 WMFFILPAVTER 133 (228)
Q Consensus 122 ~~ff~lp~~t~~ 133 (228)
||+||.|++.+-
T Consensus 32 WMWfIFPQl~GL 43 (140)
T d2jeka1 32 WMWFVFPQLRGL 43 (140)
T ss_dssp CHHHHSCCBTTS
T ss_pred eeeehhHhhccc
Confidence 899999988764
No 10
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=4.71 E-value=95 Score=22.29 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=6.2
Q ss_pred HHHHhhhc
Q psy3569 155 SAYQIRSG 162 (228)
Q Consensus 155 Sa~Qir~G 162 (228)
||+||..|
T Consensus 28 SALqIl~G 35 (123)
T d2r7ka1 28 TSLHILKG 35 (123)
T ss_dssp THHHHHHH
T ss_pred hHHHHhhh
Confidence 78888765
Done!