RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3569
         (228 letters)



>gnl|CDD|221450 pfam12166, DUF3595, Protein of unknown function (DUF3595).  This
           family of proteins is functionally uncharacterized.This
           family of proteins is found in eukaryotes. Proteins in
           this family are typically between 578 and 2525 amino
           acids in length.
          Length = 420

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 23/41 (56%), Positives = 34/41 (82%)

Query: 188 MMVPFVFELRALMDWMWTDTSMTLWDWLKMEDIYAHIFQLK 228
             +PF+FELR L+DW +TDTS+ L+DW K+EDIYA+++ +K
Sbjct: 1   RAIPFLFELRTLLDWTFTDTSLDLFDWFKLEDIYANLYIIK 41


>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
           VIII myosins, a subgroup which has been associated with
           endocytosis, cytokinesis, cell-to-cell coupling and
           gating at plasmodesmata. This catalytic (head) domain
           has ATPase activity and belongs to the larger group of
           P-loop NTPases. Myosins are actin-dependent molecular
           motors that play important roles in muscle contraction,
           cell motility, and organelle transport. The head domain
           is a molecular motor, which utilizes ATP hydrolysis to
           generate directed movement toward the plus end along
           actin filaments. A cyclical interaction between myosin
           and actin provides the driving force. Rates of ATP
           hydrolysis and consequently the speed of movement along
           actin filaments vary widely, from about 0.04 micrometer
           per second for myosin I to 4.5 micrometer per second for
           myosin II in skeletal muscle. Myosin II moves in
           discrete steps about 5-10 nm long and generates 1-5
           piconewtons of force. Upon ATP binding, the myosin head
           dissociates from an actin filament. ATP hydrolysis
           causes the head to pivot and associate with a new actin
           subunit. The release of Pi causes the head to pivot and
           move the filament (power stroke). Release of ADP
           completes the cycle.
          Length = 677

 Score = 29.4 bits (66), Expect = 1.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 5   RCQIKRNKQFNAAVYPQ--IWYWVKCVYLLLSAYQIRSGYPTRILGNFLCKNYNYLNKF 61
           RC IK N +    +Y Q  +   ++C  +L      RSGYPTR+      + Y +L   
Sbjct: 574 RC-IKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631


>gnl|CDD|219345 pfam07243, Phlebovirus_G1, Phlebovirus glycoprotein G1.  This
           family consists of several Phlebovirus glycoprotein G1
           sequences. Members of the Bunyaviridae family acquire an
           envelope by budding through the lipid bilayer of the
           Golgi complex. The budding compartment is thought to be
           determined by the accumulation of the two heterodimeric
           membrane glycoproteins G1 and G2 in the Golgi.
          Length = 527

 Score = 27.1 bits (60), Expect = 8.7
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 80  VPFLVMLILQFALIVVDRTLYLRKFILGKIVFQFLLVFGVHAWMFFILPAVTERQFN 136
           V  LVM IL   L+V+ R L L K     ++     +     WM   L        +
Sbjct: 426 VSTLVMSILTLLLLVLKRALDLLKRAPYWLLTPLCWLSVFIGWMIRKLKIRVGSAIS 482


>gnl|CDD|180320 PRK05948, PRK05948, precorrin-2 methyltransferase; Provisional.
          Length = 238

 Score = 26.5 bits (59), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 16  AAVYPQIWYWVKCVYLLLSAY 36
           ++VYPQ+W W+K   LL  A 
Sbjct: 180 SSVYPQVWQWLKARNLLEQAS 200



 Score = 26.5 bits (59), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 137 AAVYPQIWYWVKCVYLLLSAY 157
           ++VYPQ+W W+K   LL  A 
Sbjct: 180 SSVYPQVWQWLKARNLLEQAS 200


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.334    0.145    0.495 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,099,000
Number of extensions: 1180053
Number of successful extensions: 1740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1731
Number of HSP's successfully gapped: 71
Length of query: 228
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 134
Effective length of database: 6,768,326
Effective search space: 906955684
Effective search space used: 906955684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (25.6 bits)