RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3569
         (228 letters)



>2foz_A ADP-ribosylhydrolase like 2; all alpha-helical, metal binding;
           1.60A {Homo sapiens} PDB: 2fp0_A 2g4k_A 2qty_A
          Length = 347

 Score = 27.0 bits (60), Expect = 4.8
 Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 4/25 (16%)

Query: 188 MMVPFVFELRALMDWMWTD-TSMTL 211
              P      A     +TD T+M  
Sbjct: 46  PGTPGSERTEA---LYYTDDTAMAR 67


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 9.8
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 16/99 (16%)

Query: 58  LNKFLFKGSLFP-FSYISQAQVPVPFLVMLILQFA-LIVVDRTL-----YLRKFILGKIV 110
           + ++L   S  P   Y+    +  P +   ++Q A  +V  + L      LR ++ G   
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGATG 272

Query: 111 FQFLLVFGVHAWMFFILPAVTERQF--NAAVYPQIWYWV 147
               LV  V      I    +   F  +      + +++
Sbjct: 273 HSQGLVTAV-----AIAETDSWESFFVSVRKAITVLFFI 306


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.145    0.495 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,641,293
Number of extensions: 201767
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 9
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.2 bits)