RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3569
         (228 letters)



>d2j2ja1 b.21.1.1 (A:361-542) Adenovirus fiber protein "knob" domain
           {Canine adenovirus 2 [TaxId: 10514]}
          Length = 182

 Score = 24.4 bits (53), Expect = 9.5
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 56  NYLNKFLFKGSLFPFSYISQAQ 77
                 LFK  +  F+Y+ + Q
Sbjct: 161 RLSGGTLFKTDVLTFTYVGENQ 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.145    0.495 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,799
Number of extensions: 44281
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 10
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.8 bits)