BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy357
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 91.3 bits (225), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 41 QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
Q+P+DP FP QWYL Q DLNV+ AWAQG TG I +I+DDG++ H DL
Sbjct: 4 QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLA 57
Query: 101 NNYNAKASYDFSSNDPHPYPRYTDDWFNR 129
NY+ AS+D + DP P PRYT NR
Sbjct: 58 GNYDPGASFDVNDQDPDPQPRYTQMNDNR 86
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 37 MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVD 93
+KE++D +DP F QW+L N G D+NV W +TG + AI+DDG+D
Sbjct: 11 VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLWYNNITGAGVVAAIVDDGLD 66
Query: 94 YMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
Y + DLK+N+ A+ S+DF+ N P PR +DD+
Sbjct: 67 YENEDLKDNFXAEGSWDFNDNTNLPKPRLSDDY 99
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 37 MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVD 93
+KE++D +DP F QW+L N G D+NV W +TG + AI+DDG+D
Sbjct: 4 VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLWYNNITGAGVVAAIVDDGLD 59
Query: 94 YMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
Y + DLK+N+ A+ S+DF+ N P PR +DD+
Sbjct: 60 YENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY 92
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 37 MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVD 93
+KE++D +DP F QW+L N G D+NV W +TG + AI+DDG+D
Sbjct: 2 VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLWYNNITGAGVVAAIVDDGLD 57
Query: 94 YMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
Y + DLK+N+ A+ S+DF+ N P PR +DD+
Sbjct: 58 YENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY 90
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 44 SDPYFPFQWYLKNTGQNG-----GKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMD 98
++P QWYL N+GQ+G G A DLN+ A GV G+ + A++DDG+ H D
Sbjct: 28 ANPLQDQQWYLLNSGQDGFSARGGIAGNDLNLWWAHRTGVLGQGVNVAVVDDGLAIAHPD 87
Query: 99 LKNN 102
L +N
Sbjct: 88 LADN 91
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 43 PSDPYFPFQW-YLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
P+DP + QW Y N G + + W +G TG+ + +++D G+ H+DL
Sbjct: 3 PNDPSYRQQWHYFSNYG---------VKADKVWDRGFTGQGVVVSVVDTGI-LDHVDL-- 50
Query: 102 NYNAKASYDFSSNDPHPY--------PRYTDDWFNRWN 131
N N YDF S+ P P DWF+ W+
Sbjct: 51 NGNMLPGYDFISSAPKARDGDQRDNNPADEGDWFDNWD 88
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 43 PSDPYFPFQW-YLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
P+DP + QW Y N G + W +G TG+ + +++D G+ H+DL
Sbjct: 3 PNDPSYRQQWHYFGNYG---------VKANKVWDRGFTGQGVVVSVVDTGI-LDHVDL-- 50
Query: 102 NYNAKASYDFSSNDPHPY--------PRYTDDWFNRWN 131
N N YDF S+ P+ P DWF+ W+
Sbjct: 51 NGNMLPGYDFISSAPNARDGDQRDNNPADEGDWFDNWD 88
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 23/98 (23%)
Query: 43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
P+D ++ QW+ + + + + W G TG+N+ A++D G+ + H DL N
Sbjct: 2 PNDQHYREQWHYFD--------RYGVKADKVWDMGFTGQNVVVAVVDTGILH-HRDL--N 50
Query: 103 YNAKASYDFSSN----------DPHPYPRYTDDWFNRW 130
N YDF SN D P+ DWF+ W
Sbjct: 51 ANVLPGYDFISNSQISLDGDGRDADPFDE--GDWFDNW 86
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 23/98 (23%)
Query: 43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
P+D ++ QW+ + + + + W G TG+N+ A++D G+ + H DL N
Sbjct: 2 PNDQHYREQWHYFD--------RYGVKADKVWDMGFTGQNVVVAVVDTGILH-HRDL--N 50
Query: 103 YNAKASYDFSSN----------DPHPYPRYTDDWFNRW 130
N YDF SN D P+ DWF+ W
Sbjct: 51 ANVLPGYDFISNSQISLDGDGRDADPFDE--GDWFDNW 86
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 23/98 (23%)
Query: 43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
P+D ++ QW+ + + + + W G TG+N+ A++D G+ + H DL N
Sbjct: 2 PNDQHYREQWHYFD--------RYGVKADKVWDMGFTGQNVVVAVVDTGILH-HRDL--N 50
Query: 103 YNAKASYDFSSN----------DPHPYPRYTDDWFNRW 130
N YDF SN D P+ DWF+ W
Sbjct: 51 ANVLPGYDFISNSQISLDGDGRDADPFDE--GDWFDNW 86
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
+QG TG N+ A++D G+D H DL N + F ++ +PY
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL----NVRGGASFVPSETNPY 58
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
+QG TG N+ A++D G+D H DL N + F ++ +PY
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL----NVRGGASFVPSETNPY 58
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
+QG TG N+ A++D G+D H DL N + F ++ +PY
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL----NVRGGASFVPSETNPY 58
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
+ A +QG TG N+ A++D G+D H DLK A S P P + DD
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGA-------SMVPSETPNFQDD 61
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
+ A +QG TG N+ A++D G+D H DL N AS+ S +P
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL--NVAGGASFVPSETNP 57
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
+ A +QG TG N+ A++D G+D H DL N AS+ S +P
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL--NVAGGASFVPSETNP 57
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
+ A +QG TG N+ A++D G+D H DL N AS+ S +P
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL--NVAGGASFVPSETNP 57
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
+ A +QG TG N+ A++D G+D H DL N AS+ S +P
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL--NVAGGASFVPSETNP 57
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A ++G TG N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSEGYTGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG G N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYCGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG G N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYCGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
+ A +QG G N+ A++D G+D H DLK
Sbjct: 11 IKAPALHSQGYCGSNVKVAVIDSGIDSSHPDLK 43
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
+ A +QG TG N+ A+++ G+D H DL N AS+ S +P
Sbjct: 11 IKAPALHSQGYTGSNVKVAVINSGIDSSHPDL--NVAGGASFVPSETNP 57
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
+QG TG N+ A++ G+D H DL N AS+ S +P
Sbjct: 18 SQGYTGSNVKVAVLASGIDSSHPDL--NVAGGASFVPSETNP 57
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
+QG TG N+ A++ G+D H DL N AS+ S +P
Sbjct: 18 SQGYTGSNVKVAVLASGIDSSHPDL--NVAGGASFVPSETNP 57
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDLK 100
+QG TG N+ A++D G+D H LK
Sbjct: 15 SQGYTGSNVKVAVIDSGIDSSHPALK 40
>pdb|1Y43|B Chain B, Crystal Structure Of Aspergilloglutamic Peptidase From
Aspergillus Niger
pdb|3TRS|B Chain B, The Crystal Structure Of Aspergilloglutamic Peptidase From
Aspergillus Niger
pdb|3TRS|D Chain D, The Crystal Structure Of Aspergilloglutamic Peptidase From
Aspergillus Niger
Length = 173
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 72 AAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNA------KASYDFS 112
+AW G+ G TAI+ GVD+ + D + +Y+A +YDFS
Sbjct: 8 SAWV-GIDGDTCETAILQTGVDFCYEDGQTSYDAWYEWYPDYAYDFS 53
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 73 AW--AQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHP 118
AW +G +G+ I A++D GVDY H DL YDF ND P
Sbjct: 23 AWDVTKGSSGQEI--AVIDTGVDYTHPDLDG--KVIKGYDFVDNDYDP 66
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDLK 100
AQG G N+ I+D G+ H DLK
Sbjct: 18 AQGYKGANVKVGIIDTGIASSHTDLK 43
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDL 99
AQG G N+ A++D G+ H DL
Sbjct: 18 AQGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDL 99
AQG G N+ A++D G+ H DL
Sbjct: 18 AQGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDL 99
AQG G N+ A++D G+ H DL
Sbjct: 18 AQGFKGANVKVAVLDTGIQASHPDL 42
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus
Sermetstatin In Complex With Bacillus Licheniformis
Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus
Sermetstatin In Complex With Bacillus Licheniformis
Subtilisin
Length = 274
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDL 99
AQG G N+ A++D G+ H DL
Sbjct: 18 AQGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The
Complex Formed Between Subtilisin Carlsberg And Eglin
C, An Elastase Inhibitor From The Leech Hirudo
Medicinalis. Structural Analysis, Subtilisin Structure
And Interface Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDL 99
AQG G N+ A++D G+ H DL
Sbjct: 18 AQGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDL 99
AQG G N+ A++D G+ H DL
Sbjct: 19 AQGFKGANVKVAVLDTGIQASHPDL 43
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 AQGVTGRNITTAIMDDGVDYMHMDL 99
AQG G N+ A++D G+ H DL
Sbjct: 19 AQGFKGANVKVAVLDTGIQASHPDL 43
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNA 105
+G NI A++D GVD H DL+ A
Sbjct: 152 SGTNIIVAVVDTGVDGTHPDLEGQVIA 178
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNY 103
+VEA+ G+ + ++D+ V + MDLKN Y
Sbjct: 38 DVEASRTIDAGGKFVMPGVVDEHVHIIDMDLKNRY 72
>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 255
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 3 HMEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQ 51
H+ + + + + K V+ L+P+++ KE ++ + FP Q
Sbjct: 160 HIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQ 208
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 109 IQVAVLDTGVDYDHPDLAAN 128
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 109 IQVAVLDTGVDYDHPDLAAN 128
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 109 IQVAVLDTGVDYDHPDLAAN 128
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 109 IQVAVLDTGVDYDHPDLAAN 128
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 80 GRNITTAIMDDGVDYMHMDLKNN 102
G I A++D GV+ H DL NN
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNN 47
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 80 GRNITTAIMDDGVDYMHMDLKNN 102
G I A++D GV+ H DL NN
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNN 47
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 80 GRNITTAIMDDGVDYMHMDLKNN 102
G I A++D GV+ H DL NN
Sbjct: 25 GAGINIAVLDTGVNTNHPDLSNN 47
>pdb|1FMM|S Chain S, Solution Structure Of Nfgf-1
Length = 132
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 31 LVPDIVMKESQDPSDPYFPFQWYLKNTGQ 59
+ PD + ++D SDPY Q+Y ++ G+
Sbjct: 17 IFPDGKVDGTRDRSDPYIQLQFYAESVGE 45
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 53 YLKNTGQNG-GK------------AKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDL 99
YL NTG NG GK A LD +++ A + N T GVD +D
Sbjct: 431 YLVNTGWNGTGKRISIKDTRGIIDAILDGSIDTANTATIPYFNFTVPTELKGVDTKILDP 490
Query: 100 KNNYNAKASYDFSSND 115
+N Y + ++ + D
Sbjct: 491 RNTYADASEWEVKAKD 506
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 40 IQVAVLDTGVDYDHPDLAAN 59
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 106 IQVAVLDTGVDYDHPDLAAN 125
>pdb|3R4S|A Chain A, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
pdb|3R4S|B Chain B, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
pdb|3R4U|A Chain A, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
pdb|3R4U|B Chain B, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
Length = 443
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 36 VMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAA------------------WAQG 77
V +E +P FPF + L ++G++ GK + N W
Sbjct: 33 VSEEGDVQLNPIFPFDFKLGSSGEDRGKVIVTQNENIVYNSMYESFSISFWIRINKWVSN 92
Query: 78 VTGRNITTAIMDD-----GV--DYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWF 127
+ G I ++ ++ G+ +++ LK N +++ S +FS + + P Y + WF
Sbjct: 93 LPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNEDSEQSINFSYDISNNAPGY-NKWF 148
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 31 IQVAVLDTGVDYDHPDLAAN 50
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 40 IQVAVLDTGVDYDHPDLAAN 59
>pdb|3N7K|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype C1
Binding Domain
pdb|3N7K|B Chain B, Crystal Structure Of Botulinum Neurotoxin Serotype C1
Binding Domain
Length = 426
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 36 VMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAA------------------WAQG 77
V +E +P FPF + L ++G++ GK + N W
Sbjct: 28 VSEEGDVQLNPIFPFDFKLGSSGEDRGKVIVTQNENIVYNSMYESFSISFWIRINKWVSN 87
Query: 78 VTGRNITTAIMDD-----GV--DYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWF 127
+ G I ++ ++ G+ +++ LK N +++ S +FS + + P Y + WF
Sbjct: 88 LPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNEDSEQSINFSYDISNNAPGY-NKWF 143
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 29 IQVAVLDTGVDYDHPDLAAN 48
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 29 IQVAVLDTGVDYDHPDLAAN 48
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ITTAIMDDGVDYMHMDLKNN 102
I A++D GVDY H DL N
Sbjct: 29 IQVAVLDTGVDYDHPDLAAN 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,771,675
Number of Sequences: 62578
Number of extensions: 197798
Number of successful extensions: 554
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 84
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)