Query psy357
Match_columns 132
No_of_seqs 167 out of 1395
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:01:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 100.0 4.7E-31 1E-35 214.7 5.6 122 1-132 91-212 (629)
2 cd04059 Peptidases_S8_Protein_ 99.9 1.6E-21 3.6E-26 153.3 8.1 88 43-132 1-88 (297)
3 PTZ00262 subtilisin-like prote 99.7 7.1E-17 1.5E-21 139.3 6.4 76 40-132 284-382 (639)
4 cd07484 Peptidases_S8_Thermita 99.6 2.2E-15 4.7E-20 116.7 6.2 72 42-132 1-72 (260)
5 cd07489 Peptidases_S8_5 Peptid 99.3 3.5E-12 7.5E-17 101.5 5.6 63 70-132 2-72 (312)
6 cd07475 Peptidases_S8_C5a_Pept 99.2 2.1E-11 4.6E-16 98.0 4.3 58 72-132 1-86 (346)
7 cd04077 Peptidases_S8_PCSK9_Pr 99.2 1.7E-11 3.7E-16 94.7 3.3 66 52-132 1-67 (255)
8 cd07485 Peptidases_S8_Fervidol 99.1 7.6E-11 1.7E-15 92.2 4.1 60 72-132 1-65 (273)
9 cd04843 Peptidases_S8_11 Pepti 99.0 3E-10 6.5E-15 89.9 5.2 37 68-104 2-39 (277)
10 cd07483 Peptidases_S8_Subtilis 99.0 2.5E-10 5.4E-15 90.6 4.4 24 81-104 1-24 (291)
11 KOG3525|consensus 99.0 4.3E-10 9.3E-15 94.2 5.2 84 45-132 1-84 (431)
12 cd07479 Peptidases_S8_SKI-1_li 99.0 3.4E-10 7.3E-15 88.3 3.2 49 74-132 1-49 (255)
13 cd07497 Peptidases_S8_14 Pepti 99.0 5.4E-10 1.2E-14 89.9 4.4 24 80-103 1-24 (311)
14 cd04852 Peptidases_S8_3 Peptid 98.9 6.3E-10 1.4E-14 88.5 4.0 30 73-102 22-51 (307)
15 cd07491 Peptidases_S8_7 Peptid 98.9 1.1E-09 2.4E-14 85.3 3.9 51 80-132 2-53 (247)
16 cd07494 Peptidases_S8_10 Pepti 98.8 4.4E-09 9.6E-14 84.0 5.6 34 67-101 7-40 (298)
17 cd07480 Peptidases_S8_12 Pepti 98.8 2.3E-09 5E-14 85.0 3.8 48 76-132 3-50 (297)
18 cd07476 Peptidases_S8_thiazoli 98.8 3.6E-09 7.7E-14 83.3 3.5 31 73-103 2-32 (267)
19 cd07474 Peptidases_S8_subtilis 98.8 4.3E-09 9.3E-14 82.6 3.9 53 80-132 1-66 (295)
20 cd04842 Peptidases_S8_Kp43_pro 98.8 4.7E-09 1E-13 82.2 3.6 28 76-103 2-29 (293)
21 cd07493 Peptidases_S8_9 Peptid 98.8 5.5E-09 1.2E-13 81.2 3.5 46 82-132 1-51 (261)
22 cd07473 Peptidases_S8_Subtilis 98.7 7.5E-09 1.6E-13 79.8 3.8 24 81-104 2-25 (259)
23 cd07481 Peptidases_S8_Bacillop 98.7 1.1E-08 2.3E-13 79.7 4.4 25 80-104 1-25 (264)
24 cd07478 Peptidases_S8_CspA-lik 98.7 8.2E-09 1.8E-13 87.0 3.9 24 78-101 1-24 (455)
25 cd07496 Peptidases_S8_13 Pepti 98.7 9.5E-09 2.1E-13 80.8 3.7 31 82-114 1-31 (285)
26 cd07492 Peptidases_S8_8 Peptid 98.7 2.1E-08 4.5E-13 76.0 3.9 48 82-132 1-48 (222)
27 cd07490 Peptidases_S8_6 Peptid 98.6 4.4E-08 9.5E-13 75.3 4.1 47 82-132 1-47 (254)
28 cd04848 Peptidases_S8_Autotran 98.6 4.1E-08 8.8E-13 75.1 3.8 50 79-132 1-50 (267)
29 cd07487 Peptidases_S8_1 Peptid 98.6 4.2E-08 9.1E-13 75.5 3.8 48 80-132 1-48 (264)
30 cd07498 Peptidases_S8_15 Pepti 98.6 4.3E-08 9.3E-13 75.0 3.5 44 83-132 1-44 (242)
31 cd07482 Peptidases_S8_Lantibio 98.5 1.5E-07 3.1E-12 73.7 4.4 24 82-105 1-24 (294)
32 cd07477 Peptidases_S8_Subtilis 98.4 1.6E-07 3.5E-12 70.9 3.5 44 82-132 1-44 (229)
33 cd05562 Peptidases_S53_like Pe 98.4 1.3E-07 2.8E-12 74.9 2.8 21 77-97 1-21 (275)
34 PF00082 Peptidase_S8: Subtila 98.2 5.2E-07 1.1E-11 69.8 1.6 46 84-132 1-50 (282)
35 COG1404 AprE Subtilisin-like s 98.1 4.5E-06 9.8E-11 67.9 5.7 59 68-132 127-187 (508)
36 KOG4266|consensus 97.9 1.2E-05 2.7E-10 70.0 4.2 36 67-102 187-222 (1033)
37 KOG1153|consensus 97.8 2E-05 4.2E-10 66.3 3.2 45 79-132 217-261 (501)
38 cd00306 Peptidases_S8_S53 Pept 97.6 8.5E-05 1.8E-09 55.0 3.7 45 83-132 1-48 (241)
39 cd04857 Peptidases_S8_Tripepti 97.4 0.00012 2.7E-09 61.3 3.3 36 66-101 6-43 (412)
40 cd05561 Peptidases_S8_4 Peptid 97.3 0.00013 2.8E-09 56.3 2.3 22 83-104 1-22 (239)
41 cd04847 Peptidases_S8_Subtilis 97.3 0.00017 3.7E-09 56.9 2.5 27 84-110 2-28 (291)
42 KOG1114|consensus 92.0 0.1 2.3E-06 48.1 2.3 34 68-101 66-101 (1304)
43 COG4934 Predicted protease [Po 33.8 27 0.00058 33.5 1.8 32 69-100 216-248 (1174)
44 PF08195 TRI9: TRI9 protein; 24.6 20 0.00044 20.2 -0.3 10 2-11 12-21 (43)
No 1
>KOG3526|consensus
Probab=99.97 E-value=4.7e-31 Score=214.70 Aligned_cols=122 Identities=66% Similarity=1.114 Sum_probs=114.5
Q ss_pred CCCCCceeEEEeccceeeecccCcCCcccccccceeeccCCCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCC
Q psy357 1 MVHMEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTG 80 (132)
Q Consensus 1 ~~~~~~v~~~~~q~~~~r~kR~~~~~~~~~~~p~~~~~~~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g 80 (132)
|..+|+|+-++||..+.|.||+++++.. ....-+||+|.+||||.|+||.+|+++.|+|+.+||.+|++|
T Consensus 91 l~~dp~v~~a~qq~gf~r~krgyrp~~~----------fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tg 160 (629)
T KOG3526|consen 91 LHNDPEVKMALQQEGFDRKKRGYRPINE----------FDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTG 160 (629)
T ss_pred hccChhHhhhhhccccchhhccCCchhh----------hccccCCcccceeeeeecccccCCcccccccHHHHHhhcccC
Confidence 4578999999999999999999988753 223457999999999999999999999999999999999999
Q ss_pred CceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 81 RNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 81 ~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
|+|++||+|+|||+.||||+.|+...+||||.++|+-|+|+|.++..|+|||
T Consensus 161 knvttaimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgt 212 (629)
T KOG3526|consen 161 KNVTTAIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGT 212 (629)
T ss_pred CCceEEeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCc
Confidence 9999999999999999999999999999999999999999999999999998
No 2
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.85 E-value=1.6e-21 Score=153.34 Aligned_cols=88 Identities=59% Similarity=1.108 Sum_probs=80.2
Q ss_pred CCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCC
Q psy357 43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY 122 (132)
Q Consensus 43 p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~ 122 (132)
||||++.+||+|++.++.+++.+.+|++..+|+.+++|++|+|||||+||+..||||++++....+|+|..++.++.|..
T Consensus 1 ~~dp~~~~qw~l~~~~~~~~~~~~~~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T cd04059 1 PNDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRY 80 (297)
T ss_pred CCCcccccccccccCCCCCCCCCCCcccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999987778999998877776654
Q ss_pred CCCCCCCCCC
Q psy357 123 TDDWFNRWNN 132 (132)
Q Consensus 123 ~~~~~~~HGT 132 (132)
.+.++|||
T Consensus 81 --~~~~gHGT 88 (297)
T cd04059 81 --DDDNSHGT 88 (297)
T ss_pred --ccccccCc
Confidence 24569998
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.67 E-value=7.1e-17 Score=139.29 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=63.1
Q ss_pred CCCCCCCCCCcccccccCCCCCCCccccCChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhcccCC------------
Q psy357 40 SQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKNNYNA------------ 105 (132)
Q Consensus 40 ~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~~~~~------------ 105 (132)
.+.+|||++..||+|.. ++++++|+. +.+|++|+|||||||||++||||+++++.
T Consensus 284 ~~~~ND~~~~~qWgLd~-----------i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiD 352 (639)
T PTZ00262 284 KYQFNDEGRNLQWGLDL-----------TRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGID 352 (639)
T ss_pred ccccCCCCcccCcCcch-----------hCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccc
Confidence 46799999999999986 778999985 45789999999999999999999988743
Q ss_pred ---------CCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 106 ---------KASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 106 ---------~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
..||||++++.+|+ +.++|||
T Consensus 353 dD~nG~vdd~~G~nfVd~~~~P~------D~~GHGT 382 (639)
T PTZ00262 353 DDNNGNVDDEYGANFVNNDGGPM------DDNYHGT 382 (639)
T ss_pred cccCCcccccccccccCCCCCCC------CCCCcch
Confidence 24678887776663 4579998
No 4
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.59 E-value=2.2e-15 Score=116.67 Aligned_cols=72 Identities=35% Similarity=0.631 Sum_probs=60.8
Q ss_pred CCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCC
Q psy357 42 DPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPR 121 (132)
Q Consensus 42 ~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~ 121 (132)
+|+||+|.+||+|.. ++++.+|..+ +|++|+|||||+||+.+||+|... ....+++|.+.+.++.
T Consensus 1 ~~~~~~~~~~w~~~~-----------~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-~~~~~~~~~~~~~~~~-- 65 (260)
T cd07484 1 TPNDPYYSYQWNLDQ-----------IGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-KFVLGYDFVDNDSDAM-- 65 (260)
T ss_pred CCCCcCcccCCCccc-----------cChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-CcccceeccCCCCCCC--
Confidence 589999999999986 8899999998 999999999999999999998554 3457889987765532
Q ss_pred CCCCCCCCCCC
Q psy357 122 YTDDWFNRWNN 132 (132)
Q Consensus 122 ~~~~~~~~HGT 132 (132)
+..+|||
T Consensus 66 ----d~~~HGT 72 (260)
T cd07484 66 ----DDNGHGT 72 (260)
T ss_pred ----CCCCcHH
Confidence 3468998
No 5
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.30 E-value=3.5e-12 Score=101.53 Aligned_cols=63 Identities=29% Similarity=0.530 Sum_probs=47.6
Q ss_pred hHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCC----CCceeccCCCC----CCCCCCCCCCCCCCCC
Q psy357 70 VEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNA----KASYDFSSNDP----HPYPRYTDDWFNRWNN 132 (132)
Q Consensus 70 ~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~----~~~~df~~~d~----~p~p~~~~~~~~~HGT 132 (132)
+..+|+.+++|++|+|||||+||+++||+|++++.. ..+|||+.++. .+.+.....+.++|||
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~gHGT 72 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGT 72 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCcccccccCCCCCCCCCCCCCcHH
Confidence 688999999999999999999999999999987643 45678875542 2222222234579998
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.17 E-value=2.1e-11 Score=97.95 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=46.1
Q ss_pred HHHhcCC-CCCceEEEEeeCCCCCCChhhhcccCCC---------------------------CceeccCCCCCCCCCCC
Q psy357 72 AAWAQGV-TGRNITTAIMDDGVDYMHMDLKNNYNAK---------------------------ASYDFSSNDPHPYPRYT 123 (132)
Q Consensus 72 ~aw~~~~-~g~~V~VaViDtGid~~HpDL~~~~~~~---------------------------~~~df~~~d~~p~p~~~ 123 (132)
++|+.+. +|++|+||||||||+++||+|.++.... .+|||++++.++.+
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILD--- 77 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCC---
Confidence 3799876 8999999999999999999998765443 36888888777654
Q ss_pred CCCCCCCCC
Q psy357 124 DDWFNRWNN 132 (132)
Q Consensus 124 ~~~~~~HGT 132 (132)
..+..+|||
T Consensus 78 ~~~~~~HGT 86 (346)
T cd07475 78 EDDGSSHGM 86 (346)
T ss_pred CCCCCCcHH
Confidence 234579998
No 7
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.16 E-value=1.7e-11 Score=94.73 Aligned_cols=66 Identities=23% Similarity=0.411 Sum_probs=49.4
Q ss_pred cccccCCCCCCCccccCChHH-HHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCC
Q psy357 52 WYLKNTGQNGGKAKLDLNVEA-AWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRW 130 (132)
Q Consensus 52 W~L~~~g~~~~~~g~~i~~~~-aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~H 130 (132)
|+|..+.+.. ..... +|..+++|++|+|||||+||+.+||+|+++.. .+++|...+. ..+.++|
T Consensus 1 w~l~~~~~~~------~~~~~~~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~--~~~~~~~~~~-------~~d~~~H 65 (255)
T cd04077 1 WGLDRISQRD------LPLDGTYYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAI--WGADFVGGDP-------DSDCNGH 65 (255)
T ss_pred CCccccCCCC------CCCCCceEecCCCCCCcEEEEEcCCCCCCChhhhCCee--eeeecCCCCC-------CCCCCcc
Confidence 8887654421 22233 67778999999999999999999999999864 5788877543 2345799
Q ss_pred CC
Q psy357 131 NN 132 (132)
Q Consensus 131 GT 132 (132)
||
T Consensus 66 GT 67 (255)
T cd04077 66 GT 67 (255)
T ss_pred HH
Confidence 98
No 8
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.09 E-value=7.6e-11 Score=92.23 Aligned_cols=60 Identities=30% Similarity=0.331 Sum_probs=41.7
Q ss_pred HHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCC-----CCCCCCCCCCCCC
Q psy357 72 AAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY-----PRYTDDWFNRWNN 132 (132)
Q Consensus 72 ~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~-----p~~~~~~~~~HGT 132 (132)
++|..+++|++|+||||||||+.+||+|+++.. ..+|+...+...+. +.....+.++|||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGD-GDGYDPAVNGYNFVPNVGDIDNDVSVGGGHGT 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCC-CCCcccccCCcccccccCCcCCCCCCCCCCHH
Confidence 479999999999999999999999999999832 23444433333222 0111234579998
No 9
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.03 E-value=3e-10 Score=89.93 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.3
Q ss_pred CChHHHHhcCC-CCCceEEEEeeCCCCCCChhhhcccC
Q psy357 68 LNVEAAWAQGV-TGRNITTAIMDDGVDYMHMDLKNNYN 104 (132)
Q Consensus 68 i~~~~aw~~~~-~g~~V~VaViDtGid~~HpDL~~~~~ 104 (132)
|++.+||+... .|++|+|+|||+||+.+||||++++.
T Consensus 2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~ 39 (277)
T cd04843 2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI 39 (277)
T ss_pred CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc
Confidence 89999999853 48999999999999999999999864
No 10
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.02 E-value=2.5e-10 Score=90.55 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=22.2
Q ss_pred CceEEEEeeCCCCCCChhhhcccC
Q psy357 81 RNITTAIMDDGVDYMHMDLKNNYN 104 (132)
Q Consensus 81 ~~V~VaViDtGid~~HpDL~~~~~ 104 (132)
++|+|||||||||++||||+++++
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~ 24 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLW 24 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhh
Confidence 589999999999999999999875
No 11
>KOG3525|consensus
Probab=99.00 E-value=4.3e-10 Score=94.23 Aligned_cols=84 Identities=38% Similarity=0.692 Sum_probs=75.4
Q ss_pred CCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCC
Q psy357 45 DPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTD 124 (132)
Q Consensus 45 Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~ 124 (132)
||++..||||.+.+ ..+.++++..+|..+++|++++|+|+|+|+...||++..++.+..+|+++.++.+|.|..+.
T Consensus 1 ~~~~~~~w~l~~~~----~~~~d~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~~ 76 (431)
T KOG3525|consen 1 DPMSIHMWYLNAQE----FPGSDLNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCDG 76 (431)
T ss_pred CCCccceEEecCCc----cccccceeeeccccCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccCC
Confidence 68899999997643 34578999999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCCCCC
Q psy357 125 DWFNRWNN 132 (132)
Q Consensus 125 ~~~~~HGT 132 (132)
...+.|||
T Consensus 77 ~~~~~~g~ 84 (431)
T KOG3525|consen 77 TNENKHGT 84 (431)
T ss_pred CCccccCC
Confidence 55678886
No 12
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=98.97 E-value=3.4e-10 Score=88.34 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=37.1
Q ss_pred HhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 74 WAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 74 w~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
|+++++|++|+|||||+||+..||||++.. ...+|.+.. ...+..+|||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~---~~~~~~~~~-------~~~d~~gHGT 49 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK---ERTNWTNEK-------TLDDGLGHGT 49 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc---cccccCCCC-------CCCCCCCcHH
Confidence 888999999999999999999999998643 344554322 1124568998
No 13
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.97 E-value=5.4e-10 Score=89.92 Aligned_cols=24 Identities=46% Similarity=0.671 Sum_probs=22.3
Q ss_pred CCceEEEEeeCCCCCCChhhhccc
Q psy357 80 GRNITTAIMDDGVDYMHMDLKNNY 103 (132)
Q Consensus 80 g~~V~VaViDtGid~~HpDL~~~~ 103 (132)
|++|+|||||||||.+||||+++.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~ 24 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYG 24 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhccc
Confidence 789999999999999999998764
No 14
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.95 E-value=6.3e-10 Score=88.48 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHhcCCCCCceEEEEeeCCCCCCChhhhcc
Q psy357 73 AWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102 (132)
Q Consensus 73 aw~~~~~g~~V~VaViDtGid~~HpDL~~~ 102 (132)
+|..+++|++|+||||||||++.||+|++.
T Consensus 22 ~~~~~~~G~gv~VaViDtGid~~hp~f~~~ 51 (307)
T cd04852 22 LLGAANAGEGIIIGVLDTGIWPEHPSFADV 51 (307)
T ss_pred cccccCCCCccEEEEEeCCCCCCCcCcccC
Confidence 344588999999999999999999999764
No 15
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.90 E-value=1.1e-09 Score=85.28 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=35.9
Q ss_pred CCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCC-CCCCCCCCCC
Q psy357 80 GRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY-TDDWFNRWNN 132 (132)
Q Consensus 80 g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~-~~~~~~~HGT 132 (132)
+++|+|||||||||.+||||++++.. +++|...+.++.... ...+.++|||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~--~~~~~~~~~~~~~~~~~~~d~~gHGT 53 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIG--GKSFSPYEGDGNKVSPYYVSADGHGT 53 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccccc--CCCCCCCCCCcccCCCCCCCCCCcHH
Confidence 68999999999999999999999754 566665433221111 1124579998
No 16
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.85 E-value=4.4e-09 Score=83.97 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=31.1
Q ss_pred cCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhc
Q psy357 67 DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101 (132)
Q Consensus 67 ~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~ 101 (132)
.|++..+|+.+++|++|+||||||||+..|| |+.
T Consensus 7 ~l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~ 40 (298)
T cd07494 7 LLNATRVHQRGITGRGVRVAMVDTGFYAHPF-FES 40 (298)
T ss_pred hcChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhc
Confidence 4889999999999999999999999999998 554
No 17
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.84 E-value=2.3e-09 Score=84.96 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=37.7
Q ss_pred cCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 76 QGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 76 ~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
.+++|++|+|||||+||+.+||||+++.. ..++|.+... ..+.++|||
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~--~~~~~~~~~~-------~~d~~gHGT 50 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI--TTKSFVGGED-------VQDGHGHGT 50 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc--cCcccCCCCC-------CCCCCCcHH
Confidence 46899999999999999999999998864 4667765432 124579998
No 18
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=98.80 E-value=3.6e-09 Score=83.29 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=28.8
Q ss_pred HHhcCCCCCceEEEEeeCCCCCCChhhhccc
Q psy357 73 AWAQGVTGRNITTAIMDDGVDYMHMDLKNNY 103 (132)
Q Consensus 73 aw~~~~~g~~V~VaViDtGid~~HpDL~~~~ 103 (132)
+|..+++|++|+|||||+||+.+||+|+++.
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~ 32 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGAN 32 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCc
Confidence 6999999999999999999999999999853
No 19
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.80 E-value=4.3e-09 Score=82.61 Aligned_cols=53 Identities=28% Similarity=0.504 Sum_probs=39.1
Q ss_pred CCceEEEEeeCCCCCCChhhhcc----cCCCCceeccCCCCCCCCCCC---------CCCCCCCCC
Q psy357 80 GRNITTAIMDDGVDYMHMDLKNN----YNAKASYDFSSNDPHPYPRYT---------DDWFNRWNN 132 (132)
Q Consensus 80 g~~V~VaViDtGid~~HpDL~~~----~~~~~~~df~~~d~~p~p~~~---------~~~~~~HGT 132 (132)
|++|+|||||+||+++||+|++. .....+|+|.....++.+... ..+.++|||
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT 66 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGT 66 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHH
Confidence 79999999999999999999832 122468999887666554222 124679998
No 20
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=98.78 E-value=4.7e-09 Score=82.17 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=25.5
Q ss_pred cCCCCCceEEEEeeCCCCCCChhhhccc
Q psy357 76 QGVTGRNITTAIMDDGVDYMHMDLKNNY 103 (132)
Q Consensus 76 ~~~~g~~V~VaViDtGid~~HpDL~~~~ 103 (132)
++++|++|+|||||+||+++||||++..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~ 29 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPN 29 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCC
Confidence 5789999999999999999999998753
No 21
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.76 E-value=5.5e-09 Score=81.17 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=36.9
Q ss_pred ceEEEEeeCCCCCCChhhh-----cccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 82 NITTAIMDDGVDYMHMDLK-----NNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 82 ~V~VaViDtGid~~HpDL~-----~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
||+||||||||+.+||+|+ .+.....++||+++..++ ..+.++|||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~HGT 51 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDNSNNT-----NYTDDDHGT 51 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccccCCceeeeecCccCCCCC-----CCCCCCchh
Confidence 6899999999999999995 445556799999887655 124579998
No 22
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.75 E-value=7.5e-09 Score=79.80 Aligned_cols=24 Identities=46% Similarity=0.764 Sum_probs=22.3
Q ss_pred CceEEEEeeCCCCCCChhhhcccC
Q psy357 81 RNITTAIMDDGVDYMHMDLKNNYN 104 (132)
Q Consensus 81 ~~V~VaViDtGid~~HpDL~~~~~ 104 (132)
++|+|||||+||+++||+|+++++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~ 25 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMW 25 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccc
Confidence 689999999999999999999765
No 23
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=98.74 E-value=1.1e-08 Score=79.73 Aligned_cols=25 Identities=48% Similarity=0.786 Sum_probs=23.1
Q ss_pred CCceEEEEeeCCCCCCChhhhcccC
Q psy357 80 GRNITTAIMDDGVDYMHMDLKNNYN 104 (132)
Q Consensus 80 g~~V~VaViDtGid~~HpDL~~~~~ 104 (132)
|++|+|||||+||+++||+|++++.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~ 25 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYR 25 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccc
Confidence 7999999999999999999999753
No 24
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=98.73 E-value=8.2e-09 Score=86.96 Aligned_cols=24 Identities=38% Similarity=0.934 Sum_probs=22.4
Q ss_pred CCCCceEEEEeeCCCCCCChhhhc
Q psy357 78 VTGRNITTAIMDDGVDYMHMDLKN 101 (132)
Q Consensus 78 ~~g~~V~VaViDtGid~~HpDL~~ 101 (132)
++|++|+|||||||||+.||||+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~ 24 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRN 24 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHcc
Confidence 479999999999999999999984
No 25
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.72 E-value=9.5e-09 Score=80.85 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=27.5
Q ss_pred ceEEEEeeCCCCCCChhhhcccCCCCceeccCC
Q psy357 82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSN 114 (132)
Q Consensus 82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~ 114 (132)
+|+||||||||+.+||+|++++. .+|||+.+
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~--~g~d~~~~ 31 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL--PGYDFISD 31 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc--cCcccccC
Confidence 68999999999999999999874 58999754
No 26
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.66 E-value=2.1e-08 Score=76.02 Aligned_cols=48 Identities=19% Similarity=0.043 Sum_probs=31.1
Q ss_pred ceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
+|+|||||+||+++||+|++++.. .++|..+.... ......+.++|||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~--~~~~~~~~~~~-~~~~~~d~~gHGT 48 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD--GEVTIDLEIIV-VSAEGGDKDGHGT 48 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc--ccccccccccc-CCCCCCCCCCcHH
Confidence 689999999999999999998754 33332211110 0111234679998
No 27
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.60 E-value=4.4e-08 Score=75.34 Aligned_cols=47 Identities=26% Similarity=0.212 Sum_probs=31.9
Q ss_pred ceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
||+|||||+||+.+||||.+++.. ..+|..+...+.+ ...+.++|||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~--~~~~~~~~~~~~~--~~~d~~~HGT 47 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQ--WADFDENRRISAT--EVFDAGGHGT 47 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCC--ceeccCCCCCCCC--CCCCCCCcHH
Confidence 699999999999999999998743 3445432211111 1234579998
No 28
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=98.59 E-value=4.1e-08 Score=75.14 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=35.7
Q ss_pred CCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 79 ~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
+|++|+|||||+||+.+||+|++.+.....+.+..+...+ ...+.++|||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~HGT 50 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVAVNDAGYA----SNGDGDSHGT 50 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccccccccCC----CCCCCCChHH
Confidence 5899999999999999999999998654444444332111 1124579998
No 29
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.59 E-value=4.2e-08 Score=75.52 Aligned_cols=48 Identities=29% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 80 GRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 80 g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
|++|+|||||+||+..||+|.++... .+++..... +.....+.++|||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~--~~~~~~~~~---~~~~~~d~~~HGT 48 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR--FADFVNTVN---GRTTPYDDNGHGT 48 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc--ccccccccc---CCCCCCCCCCchH
Confidence 79999999999999999999998753 444443211 1111224568998
No 30
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.58 E-value=4.3e-08 Score=74.99 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=34.6
Q ss_pred eEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 83 ITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 83 V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
|+|||||+||+.+||+|+.+.....+|+|...+..+ .+.++|||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~------~~~~~HGT 44 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPKLVPGWNFVSNNDPT------SDIDGHGT 44 (242)
T ss_pred CEEEEecCCCCCCChhhccCcCccCCccccCCCCCC------CCCCCCHH
Confidence 789999999999999999965556788887655421 24569998
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=98.49 E-value=1.5e-07 Score=73.68 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=21.4
Q ss_pred ceEEEEeeCCCCCCChhhhcccCC
Q psy357 82 NITTAIMDDGVDYMHMDLKNNYNA 105 (132)
Q Consensus 82 ~V~VaViDtGid~~HpDL~~~~~~ 105 (132)
+|+||||||||+.+||+|++++..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~ 24 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS 24 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc
Confidence 589999999999999999987643
No 32
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=98.44 E-value=1.6e-07 Score=70.93 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=33.7
Q ss_pred ceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
+|+|||||+||+.+||+|+.++. .+++|...... ...+..+|||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~--~~~~~~~~~~~-----~~~~~~~HGT 44 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV--GGANFTGDDNN-----DYQDGNGHGT 44 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc--CcccccCCCCC-----CCCCCCCCHH
Confidence 68999999999999999999874 47777776431 1124568998
No 33
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=98.43 E-value=1.3e-07 Score=74.86 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.9
Q ss_pred CCCCCceEEEEeeCCCCCCCh
Q psy357 77 GVTGRNITTAIMDDGVDYMHM 97 (132)
Q Consensus 77 ~~~g~~V~VaViDtGid~~Hp 97 (132)
+++|++|+||||||||+..||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~ 21 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGD 21 (275)
T ss_pred CCCCCceEEEEEeCCcccccc
Confidence 579999999999999999655
No 34
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=98.21 E-value=5.2e-07 Score=69.85 Aligned_cols=46 Identities=30% Similarity=0.550 Sum_probs=34.2
Q ss_pred EEEEeeCCCCCCChhhh-cccCCC---CceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 84 TTAIMDDGVDYMHMDLK-NNYNAK---ASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 84 ~VaViDtGid~~HpDL~-~~~~~~---~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
+|||||+||+.+||+|+ +++... .+|+|.++.....+ ..+.++|||
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~HGT 50 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFIWSKVPGGYNFVDGNPNPSP---SDDDNGHGT 50 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEEEEEEEEEEETTTTBSTTTS---SSTSSSHHH
T ss_pred CEEEEcCCcCCCChhHccCCcccccccceeeccCCCCCcCc---cccCCCccc
Confidence 69999999999999999 776533 38999987632222 234568997
No 35
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.5e-06 Score=67.88 Aligned_cols=59 Identities=37% Similarity=0.466 Sum_probs=47.2
Q ss_pred CChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 68 LNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 68 i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
+.....|.. +++|++|+|+|||+||+..||+|..+... .++|+..+..+ ...+.++|||
T Consensus 127 ~~~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~--~~~~~~~~~~~----~~~d~~~hGt 187 (508)
T COG1404 127 ISVGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA--GGDFVDGDPEP----PFLDDNGHGT 187 (508)
T ss_pred cccccccccccCCCCCCeEEEEeccCCCCCChhhhccccc--ccccccCCCCC----CCCCCCCCcc
Confidence 566778886 88999999999999999999999998743 48888877664 1124578998
No 36
>KOG4266|consensus
Probab=97.89 E-value=1.2e-05 Score=70.03 Aligned_cols=36 Identities=31% Similarity=0.569 Sum_probs=33.1
Q ss_pred cCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcc
Q psy357 67 DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102 (132)
Q Consensus 67 ~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~ 102 (132)
.+.++-+|++|++|++|+|||.|||+..+||-|++-
T Consensus 187 ~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv 222 (1033)
T KOG4266|consen 187 MLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNV 222 (1033)
T ss_pred HhchhhHHhccccCCceEEEEeecccccCCccccch
Confidence 467889999999999999999999999999999864
No 37
>KOG1153|consensus
Probab=97.76 E-value=2e-05 Score=66.25 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=34.6
Q ss_pred CCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 79 ~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
.|++|+.-|+||||++.||||+++... |-++..++. +.|+|||||
T Consensus 217 aG~gvtaYv~DTGVni~H~dFegRa~w--Ga~i~~~~~-------~~D~nGHGT 261 (501)
T KOG1153|consen 217 AGKGVTAYVLDTGVNIEHPDFEGRAIW--GATIPPKDG-------DEDCNGHGT 261 (501)
T ss_pred cCCCeEEEEecccccccccccccceec--ccccCCCCc-------ccccCCCcc
Confidence 699999999999999999999998632 334443322 236799998
No 38
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=97.56 E-value=8.5e-05 Score=55.02 Aligned_cols=45 Identities=31% Similarity=0.300 Sum_probs=29.1
Q ss_pred eEEEEeeCCCCCCChhh---hcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357 83 ITTAIMDDGVDYMHMDL---KNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132 (132)
Q Consensus 83 V~VaViDtGid~~HpDL---~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT 132 (132)
|+|||||+||+.+||+| .... ..++++......+. ...+..+|||
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~HGt 48 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGGG--DGGNDDDDNENGPT---DPDDGNGHGT 48 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccCc--ccccccccCcCCCC---CCCCCCCcHH
Confidence 68999999999999986 2222 24555555433321 1224569997
No 39
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=97.41 E-value=0.00012 Score=61.26 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=30.5
Q ss_pred ccCChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhc
Q psy357 66 LDLNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKN 101 (132)
Q Consensus 66 ~~i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~ 101 (132)
..+++...+++ .+.|++|+|||||||||..||.|+-
T Consensus 6 ~~~~~~~f~~~~p~~dgr~v~iai~dtgvd~~~~~lq~ 43 (412)
T cd04857 6 KETGALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQV 43 (412)
T ss_pred chhhHHHHHHHCcCCCCCCcEEEEecCCCCCCCCcccc
Confidence 34677777775 5789999999999999999999964
No 40
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.32 E-value=0.00013 Score=56.31 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred eEEEEeeCCCCCCChhhhcccC
Q psy357 83 ITTAIMDDGVDYMHMDLKNNYN 104 (132)
Q Consensus 83 V~VaViDtGid~~HpDL~~~~~ 104 (132)
|+||||||||+.+||+|++++.
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~ 22 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI 22 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc
Confidence 7999999999999999988764
No 41
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.27 E-value=0.00017 Score=56.85 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=22.4
Q ss_pred EEEEeeCCCCCCChhhhcccCCCCcee
Q psy357 84 TTAIMDDGVDYMHMDLKNNYNAKASYD 110 (132)
Q Consensus 84 ~VaViDtGid~~HpDL~~~~~~~~~~d 110 (132)
+||||||||+..||||++++.....++
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~~~~~~ 28 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAEDDLDS 28 (291)
T ss_pred EEEEecCCCCCCChhhhhhhccccccc
Confidence 799999999999999999986543333
No 42
>KOG1114|consensus
Probab=92.04 E-value=0.1 Score=48.06 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=26.3
Q ss_pred CChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhc
Q psy357 68 LNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKN 101 (132)
Q Consensus 68 i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~ 101 (132)
+.+...-.. .|.|++|+|||+|||||..-|-|.-
T Consensus 66 t~a~~FL~kyPeYDGRgV~IaIlDtGvDP~apGl~v 101 (1304)
T KOG1114|consen 66 TGAYEFLKKYPEYDGRGVTIAILDTGVDPSAPGLQV 101 (1304)
T ss_pred hhHHHHHHhCcCCCCCceEEEEeecCCCCCCCCceE
Confidence 444444443 4789999999999999999998864
No 43
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=27 Score=33.47 Aligned_cols=32 Identities=41% Similarity=0.590 Sum_probs=22.6
Q ss_pred ChHHHHhcCCCCCceEEEEee-CCCCCCChhhh
Q psy357 69 NVEAAWAQGVTGRNITTAIMD-DGVDYMHMDLK 100 (132)
Q Consensus 69 ~~~~aw~~~~~g~~V~VaViD-tGid~~HpDL~ 100 (132)
|+..+.+.+.+|||++||||| =|-....-||.
T Consensus 216 nit~l~~~g~tGkG~tIaIid~yG~p~~~~dl~ 248 (1174)
T COG4934 216 NITALYESGATGKGETIAIIDAYGDPYNNQDLY 248 (1174)
T ss_pred ceeecccCCCCCCCcEEEEEeccCCcccHHHHH
Confidence 344555557889999999999 66665555543
No 44
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=24.65 E-value=20 Score=20.22 Aligned_cols=10 Identities=10% Similarity=-0.310 Sum_probs=7.9
Q ss_pred CCCCceeEEE
Q psy357 2 VHMEQVHQAV 11 (132)
Q Consensus 2 ~~~~~v~~~~ 11 (132)
..+|+|-|+|
T Consensus 12 ~~dp~vswle 21 (43)
T PF08195_consen 12 DMDPDVSWLE 21 (43)
T ss_pred cCCCCccHHH
Confidence 4578899987
Done!