RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy357
(132 letters)
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 120 bits (303), Expect = 2e-33
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 28 VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAI 87
+L+P ++ +DP F QW+L N G D+NV W +TG + AI
Sbjct: 5 DSSLLPVKEAEDKLSINDPLFERQWHLVNPSFPG----SDINVLDLWYNNITGAGVVAAI 60
Query: 88 MDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
+DDG+DY + DLK+N+ A+ S+DF+ N P PR +DD+
Sbjct: 61 VDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY 99
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 116 bits (292), Expect = 5e-32
Identities = 43/88 (48%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 42 DPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
+P+DP FP QWYL Q DLNV+ AWAQG TG I +I+DDG++ H DL
Sbjct: 5 EPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAG 58
Query: 102 NYNAKASYDFSSNDPHPYPRYTDDWFNR 129
NY+ AS+D + DP P PRYT NR
Sbjct: 59 NYDPGASFDVNDQDPDPQPRYTQMNDNR 86
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 111 bits (279), Expect = 5e-30
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 38 KESQDPSDPYFPFQWYLKNTGQNG-----GKAKLDLNVEAAWAQGVTGRNITTAIMDDGV 92
+ ++P QWYL N+GQ+G G A DLN+ A GV G + A++DDG+
Sbjct: 22 ERCLPGANPLQDQQWYLLNSGQDGFSARGGIAGNDLNLWWAHRTGVLGHGVNVAVVDDGL 81
Query: 93 DYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
H DL +N S + + P P D
Sbjct: 82 AIAHPDLADNVRP-GSKNVVTGSDDPTPTDPDTG 114
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 64.9 bits (158), Expect = 2e-13
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 28 VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAI 87
+ + ++ F QW + N A++ N AI
Sbjct: 103 TCSTCITSEKTIDRTSNESLFSRQWDMNKITNN----------GASYDDLPKHANTKIAI 152
Query: 88 MDDGVDYMHMDLKNNYNAKAS-------YDFSSNDPHPYPRYTDD 125
+D GV H DLKNN++ + + + + +D
Sbjct: 153 IDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVND 197
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 63.9 bits (156), Expect = 3e-13
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
P+D ++ QW+ + + + W G TG+N+ A++D G+ + H DL
Sbjct: 2 PNDQHYREQWHYFDRY--------GVKADKVWDMGFTGQNVVVAVVDTGILH-HRDLNA- 51
Query: 103 YNAKASYDFSSND 115
N YDF SN
Sbjct: 52 -NVLPGYDFISNS 63
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 62.2 bits (152), Expect = 9e-13
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 43 PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
P+D Y+ +Q+ +NT + AW A++D GVDY H DL
Sbjct: 3 PNDTYYQGYQYGPQNT-----------YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG 51
Query: 102 NYNAKASYDFSSNDPHPY 119
YDF ND P
Sbjct: 52 KVI--KGYDFVDNDYDPM 67
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 60.1 bits (145), Expect = 8e-12
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 28 VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAI 87
+ + + ++D + W L+ + V + +G NI A+
Sbjct: 112 MYKIRKPGLNSTARDYGEELSNELWGLEA-----------IGVTQQLWEEASGTNIIVAV 160
Query: 88 MDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
+D GVD H DL+ A Y + ++ P +
Sbjct: 161 VDTGVDGTHPDLEGQV--IAGYRPAFDEELPAGTDSSYG 197
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 56.8 bits (138), Expect = 7e-11
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 43 PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
P+DPYF Q+ + + AW G AI+D GV H DL
Sbjct: 3 PNDPYFSSRQYGPQK-----------IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG 50
Query: 102 NYNAKASYDFSSNDPHPY 119
+DF ND P
Sbjct: 51 --KVVGGWDFVDNDSTPQ 66
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 54.9 bits (132), Expect = 6e-10
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
W G G IT I+D G+D H DL+ DF + PY
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQG--KVIGWVDFVNGKTTPY 175
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 53.8 bits (130), Expect = 1e-09
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
G I A++D GV+ H DL N N + DF+ TD
Sbjct: 14 YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVN--NVEQCKDFTGATTPINNSCTDR 68
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 53.5 bits (129), Expect = 1e-09
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 14/83 (16%)
Query: 44 SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGV-TGRNITTAIMDDGVDYMHMDLKNN 102
+ P W ++ + + W+ + I A++D GVDY H DL N
Sbjct: 2 TQPAQTIPWGIER-----------VKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAAN 50
Query: 103 YNAKASYDFSSNDPHPYPRYTDD 125
R D
Sbjct: 51 I--AWCVSTLRGKVSTKLRDCAD 71
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 53.6 bits (129), Expect = 1e-09
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
+ WY G E + + +++D GV ++ L ++
Sbjct: 16 SASARAEKPWYFDAIGLT----------ETTMSLTDKNTPVVVSVVDSGVAFIG-GLSDS 64
Query: 103 YNAKASYDFSSNDPHPYPRYTDDW 126
AK + F+ + + ++
Sbjct: 65 EFAK--FSFTQDGSPFPVKKSEAL 86
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 51.7 bits (124), Expect = 7e-09
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 21/106 (19%)
Query: 28 VENLVPDIVMK-------ESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGV-T 79
VE + D + P W ++ + + W+ +
Sbjct: 54 VEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIER-----------VKAPSVWSITDGS 102
Query: 80 GRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
I A++D GVDY H DL N R D
Sbjct: 103 VSVIQVAVLDTGVDYDHPDLAA--NIAWCVSTLRGKVSTKLRDCAD 146
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 51.0 bits (123), Expect = 7e-09
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
+ A +QG TG N+ A++D G+D H DLK ++ +P+
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK----VAGGASMVPSETNPF 58
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 51.2 bits (123), Expect = 1e-08
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 17/95 (17%)
Query: 31 LVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDD 90
L+P D ++ + A W G ++D
Sbjct: 6 LIPYKQ----VDKVSALSEVPMGVEI-----------VEAPAVWRASAKGAGQIIGVIDT 50
Query: 91 GVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
G H DL + +++ ++D+
Sbjct: 51 GCQVDHPDLAE--RIIGGVNLTTDYGGDETNFSDN 83
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 49.5 bits (119), Expect = 3e-08
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
+ AQG G N+ A++D G+ H DL N F + + +
Sbjct: 12 KADKVQAQGFKGANVKVAVLDTGIQASHPDL----NVVGGASFVAGEAYNT 58
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 16/69 (23%)
Query: 51 QWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYD 110
W + AA +G+TG + A++D G+ H DL N +
Sbjct: 5 PWGISRVQAP-----------AAHNRGLTGSGVKVAVLDTGIST-HPDL----NIRGGAS 48
Query: 111 FSSNDPHPY 119
F +P
Sbjct: 49 FVPGEPSTQ 57
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 40.5 bits (95), Expect = 4e-05
Identities = 12/52 (23%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYP 120
N T I+D G D H DL N + S P
Sbjct: 12 GATVLS--DSQAGNRTICIIDSGYDRSHNDLNA--NNVTGTNNSGTGNWYQP 59
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 39.9 bits (93), Expect = 9e-05
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 68 LNVEAAWAQ-GVTGRNITTAIMDDGVDYMHMDLKNNY----NAKASYDFSSND 115
+ + A + G+ G+ A+ D G+D D + A Y +
Sbjct: 8 VKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTN 60
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 38.6 bits (90), Expect = 2e-04
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN 128
+ Q + IT I+D DY + + + P F
Sbjct: 37 GLADLHNQTLGDPQITIVIIDGDPDYTLSCFEGA-EVSKVFPYWHEPAEPITPEDYAAFQ 95
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 37.7 bits (87), Expect = 4e-04
Identities = 11/74 (14%), Positives = 17/74 (22%), Gaps = 17/74 (22%)
Query: 69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK-----------------NNYNAKASYDF 111
V+ + G A++D G D H + +Y
Sbjct: 5 QVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGE 64
Query: 112 SSNDPHPYPRYTDD 125
ND Y
Sbjct: 65 WVNDKVAYYHDYSK 78
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 31.6 bits (71), Expect = 0.070
Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 6/68 (8%)
Query: 71 EAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN------YNAKASYDFSSNDPHPYPRYTD 124
+ NI ++D G+ + K + + S+N
Sbjct: 12 LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGA 71
Query: 125 DWFNRWNN 132
++
Sbjct: 72 RSYHIGRP 79
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 31.3 bits (70), Expect = 0.082
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 77 GVTGRNITTAIMDDGVDYMHMDLK 100
GR++T AI D GVD L+
Sbjct: 32 EYDGRDVTIAIFDSGVDPRATGLE 55
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 29.8 bits (68), Expect = 0.21
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
G +T ++D GV H + A + YDF ND
Sbjct: 29 DGSGVTAFVIDTGVLNTHNEFGG--RASSGYDFIDNDY 64
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 29.9 bits (68), Expect = 0.21
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
G +T ++D GV+ H + + + YDF ND
Sbjct: 27 DGFGVTAYVIDTGVNNNHEEFGG--RSVSGYDFVDNDA 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.24
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 90 DGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN 128
+ +H + ++YN ++D P +Y +++
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYS 475
Score = 29.1 bits (64), Expect = 0.50
Identities = 19/144 (13%), Positives = 42/144 (29%), Gaps = 42/144 (29%)
Query: 3 HMEQVHQAVQQSGFKRVKRGYKPLKVENL----VPDI------------VMKESQDPSDP 46
HM+ Q +K + ++ V+N V D+ ++ S
Sbjct: 6 HMD-FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 47 YFPFQWYLKNTGQNGGKA----KLDLNVE---AAWAQGVTGRNITTAIMDDGVDYMHMDL 99
F W L + + + L +N + + ++ T + + D ++
Sbjct: 65 LRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--- 120
Query: 100 KNNYNAKASYDFSSNDPHPYPRYT 123
ND + +Y
Sbjct: 121 --------------NDNQVFAKYN 130
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 29.1 bits (66), Expect = 0.32
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSND 115
G ++D GV+ H D + AK ++S
Sbjct: 30 AGAGACVYVIDTGVEDTHPDFEG--RAKQIKSYASTA 64
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta,
hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Length = 90
Score = 28.0 bits (62), Expect = 0.46
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 5 EQVHQAVQQSGFKRVKR 21
++V A QQ +R KR
Sbjct: 74 DRVTWAEQQYEKERSKR 90
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 28.7 bits (65), Expect = 0.46
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
TGR + ++D G+ H + A+ YD +
Sbjct: 29 TGRGVNVYVIDTGIRTTHREFGG--RARVGYDALGGNG 64
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 28.3 bits (64), Expect = 0.61
Identities = 5/37 (13%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSND 115
G+ ++D G++ H + + A+ + +
Sbjct: 29 AGQGSCVYVIDTGIEASHPEFEG--RAQMVKTYYYSS 63
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 27.2 bits (60), Expect = 1.8
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 34 DIVMKESQDPSDPYFPFQWYLKNTG 58
D + E QDP PFQ +L G
Sbjct: 80 DNYLSEGQDP---LIPFQNFLDEIG 101
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 26.9 bits (59), Expect = 2.3
Identities = 5/47 (10%), Positives = 14/47 (29%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
G + ++D + H +++ + D + R
Sbjct: 176 GGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASK 222
>3oa1_A Phosphoprotein; seattle structural genomics center for infectious
disease, R virus, protein degredation; 2.20A {Rabies
virus strain pasteur vaccin}
Length = 229
Score = 26.1 bits (57), Expect = 3.3
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 34 DIVMKESQDPSDPYFPFQWYLKNTG 58
D M E +DP FQ YL N G
Sbjct: 12 DFQMDEGEDP---SLLFQSYLDNVG 33
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 26.0 bits (57), Expect = 4.7
Identities = 5/47 (10%), Positives = 14/47 (29%)
Query: 79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
G + ++D + H +++ + D + R
Sbjct: 24 GGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASK 70
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 25.7 bits (57), Expect = 4.7
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 66 LDLNVEAAWAQGVTG 80
LD VE A G G
Sbjct: 283 LDFFVERALKLGAYG 297
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate
facial triad, tetrahydrobiopterin, oxidoreductase; HET:
H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A*
1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A
3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Length = 325
Score = 25.4 bits (55), Expect = 6.2
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 102 NYNAKASYDFSSNDPHPYPRYTDDWFNRW 130
A +Y++ P P Y ++ W
Sbjct: 57 KQFADIAYNYRHGQPIPRVEYMEEEKKTW 85
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 25.5 bits (55), Expect = 6.8
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 71 EAAWAQGVTGRNITTAIMDDGVDYMH 96
W G+++ A++D G+
Sbjct: 14 SGLWPASGLGQDVIVAVLDSGIWPES 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.422
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,155,624
Number of extensions: 115574
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 51
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)