BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3570
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 245
Score = 289 bits (740), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 133/184 (72%), Positives = 162/184 (88%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
M+ GNR GL+VP TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62 MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
VAGTVNRGS V+GAGMVVND+ A G DTT+ E+SVIES+F+L +AQP +I+ ++R +LI
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLI 241
Query: 181 DSIA 184
++ +
Sbjct: 242 ETYS 245
>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6
pdb|2X7N|B Chain B, Mechanism Of Eif6s Anti-Association Activity
Length = 224
Score = 273 bits (698), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 126/163 (77%), Positives = 146/163 (89%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
M+ GNR GL+VP TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62 MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
VAGTVNRGS V+GAGMVVND+ A G DTT+ E+SVIES+F+L
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224
>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 248
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 116/180 (64%), Positives = 152/180 (84%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++ GN++GL+VPN D EL++IRNSLPD+V+++R+EE+LSALGN + NDYVAL+HPDL
Sbjct: 65 VTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDL 124
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
DRE+EEI+ADTL VEVFR T+++NVLVG+YC + N+GGLVHP S ++ DEL++LLQIPL
Sbjct: 125 DRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPL 184
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
AGT+NRGS+VIGAG+VVNDWAAFCG DTTSTEISV+E++FKLNE + + MR +
Sbjct: 185 CAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDFV 244
>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6
pdb|1G61|B Chain B, Crystal Structure Of M.Jannaschii Eif6
Length = 228
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDS---VKLQRVEERLSALGNVIACNDYVALVH 57
+SV N++GL++P D EL I+N L ++ + ++ ++ + +ALGN+I ND AL+
Sbjct: 62 LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALIS 121
Query: 58 PDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117
P+L ++ ++ + D+LNVEV T++ VGS +TN+G L HP + + L SL +
Sbjct: 122 PEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK 180
Query: 118 IPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
+ + GT N+G+ +GA ++ N A G DTT E+ +IE L
Sbjct: 181 VEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227
>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 222
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++VGN +G +V N D E+ + + V+ R+ ER +A+GN++ ND A+ P L
Sbjct: 60 LAVGNSNGFVVSNQAMDREIDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLL 116
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
+ +++ D L V+V T++ +VGS A TN+G L++P S ++ + L +
Sbjct: 117 SDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEA 176
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEA 166
GTVN G +IGA V N G +TT E++ IE E
Sbjct: 177 DVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 43 LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
LG I+ D VAL+ + + E +L + L VEV + ++S + L G+ + G +V
Sbjct: 13 LGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALAVGNSNGFVVSN 72
Query: 103 HTSPQDQDELSS 114
++ D L++
Sbjct: 73 QAMDREIDALAA 84
>pdb|2QPQ|A Chain A, Structure Of Bug27 From Bordetella Pertussis
pdb|2QPQ|B Chain B, Structure Of Bug27 From Bordetella Pertussis
pdb|2QPQ|C Chain C, Structure Of Bug27 From Bordetella Pertussis
Length = 301
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 7 HGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACND---YVALVHPDLDR 62
HGL+VP AT Q + + + ++ V+++L+ LG A + + +V D+DR
Sbjct: 230 HGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTASDGPEVFQKMVETDIDR 288
>pdb|2IO5|A Chain A, Crystal Structure Of The Cia- Histone H3-H4 Complex
Length = 175
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 6 RHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETE 65
R G V N T+TEL+ PD KLQR N++A N V H + + TE
Sbjct: 111 RVGYYVNNEYTETELRENPPVKPDFSKLQR---------NILASNPRVTRFHINWEDNTE 161
Query: 66 EI 67
++
Sbjct: 162 KL 163
>pdb|3PU6|A Chain A, The Crystal Structure Of An Uncharacterized Protein From
Wolinella Succinogenes
Length = 157
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 114 SLLQIPLVAGTVNRGSE--VIGAGMVVND----WAAFCGFDTTSTEISVIESVFKLNEAQ 167
SL ++ L G RG + I G +V + W+ F G+DT +E KL E
Sbjct: 2 SLKKVLLCVGNELRGDDGVAIALGRLVEEQXPEWSVFFGYDTPESEFG------KLRELA 55
Query: 168 PSAITTS 174
P I +
Sbjct: 56 PDVIVVA 62
>pdb|2I32|A Chain A, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
pdb|2I32|B Chain B, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
Length = 182
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 6 RHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVH 57
R G V N T+TEL+ PD KLQR N++A N V H
Sbjct: 133 RVGYYVNNEYTETELRENPPVKPDFSKLQR---------NILASNPRVTRFH 175
>pdb|3NX1|A Chain A, Crystal Structure Of Enterobacter Sp. Px6-4 Ferulic Acid
Decarboxylase
pdb|3NX1|B Chain B, Crystal Structure Of Enterobacter Sp. Px6-4 Ferulic Acid
Decarboxylase
pdb|3NX2|A Chain A, Enterobacter Sp. Px6-4 Ferulic Acid Decarboxylase In
Complex With Substrate Analogues
pdb|3NX2|B Chain B, Enterobacter Sp. Px6-4 Ferulic Acid Decarboxylase In
Complex With Substrate Analogues
Length = 168
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 132 IGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSI 183
I +G+V N W D + + V ES++K++ +P+ S+ +L DS+
Sbjct: 41 IHSGLVGNRWVK----DQEAYIVRVGESIYKISWTEPTGTDVSLIVNLGDSL 88
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 52 YVALVHPDLDRETEEI--LADTLNVEVFRQT-VSSNVLVGSYCALTNQGGLVHPHTSPQD 108
+ L H +L+R T+ + + L +E FR+ + N LV + N G + +P T D
Sbjct: 165 FAKLYH-ELERGTDPLAYVDPYLPIESFRRRDEARNGLVALVADIMN-GRIANPPTDKSD 222
Query: 109 QDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTS 151
+D L L+ + GT ++ I GM ++ F G T+S
Sbjct: 223 RDMLDVLIAVKAETGTPRFSADEI-TGMFIS--MMFAGHHTSS 262
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 52 YVALVHPDLDRETEEI--LADTLNVEVFRQT-VSSNVLVGSYCALTNQGGLVHPHTSPQD 108
+ L H +L+R T+ + + L +E FR+ + N LV + N G + +P T D
Sbjct: 165 FAKLYH-ELERGTDPLAYVDPYLPIESFRRRDEARNGLVALVADIMN-GRIANPPTDKSD 222
Query: 109 QDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTS 151
+D L L+ + GT ++ I GM ++ F G T+S
Sbjct: 223 RDMLDVLIAVKAETGTPRFSADEI-TGMFIS--MMFAGHHTSS 262
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 52 YVALVHPDLDRETEEI--LADTLNVEVFRQT-VSSNVLVGSYCALTNQGGLVHPHTSPQD 108
+ L H +L+R T+ + + L +E FR+ + N LV + N G + +P T D
Sbjct: 165 FAKLYH-ELERGTDPLAYVDPYLPIESFRRRDEARNGLVALVADIMN-GRIANPPTDKSD 222
Query: 109 QDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTS 151
+D L L+ + GT ++ I GM ++ F G T+S
Sbjct: 223 RDMLDVLIAVKAETGTPRFSADEI-TGMFIS--MMFAGHHTSS 262
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 52 YVALVHPDLDRETEEI--LADTLNVEVFRQT-VSSNVLVGSYCALTNQGGLVHPHTSPQD 108
+ L H +L+R T+ + + L +E FR+ + N LV + N G + +P T D
Sbjct: 165 FAKLYH-ELERGTDPLAYVDPYLPIESFRRRDEARNGLVALVADIMN-GRIANPPTDKSD 222
Query: 109 QDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTS 151
+D L L+ + GT ++ I GM ++ F G T+S
Sbjct: 223 RDMLDVLIAVKAETGTPRFSADEI-TGMFIS--MMFAGHHTSS 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,928,817
Number of Sequences: 62578
Number of extensions: 182904
Number of successful extensions: 507
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 16
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)