Query psy3570
Match_columns 184
No_of_seqs 102 out of 454
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:03:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_J EIF6, translation initi 100.0 5.4E-62 1.9E-66 416.3 13.9 183 1-183 65-247 (248)
2 1g62_A Ribosome anti-associati 100.0 1E-56 3.4E-61 379.2 14.4 163 1-163 62-224 (224)
3 4adx_I AIF6; ribosome, protein 100.0 3.6E-48 1.2E-52 326.8 20.3 162 1-165 60-221 (222)
4 1g61_A EIF-6, translation init 100.0 8.8E-47 3E-51 319.4 13.1 162 1-163 62-227 (228)
5 4adx_I AIF6; ribosome, protein 100.0 2.2E-32 7.4E-37 230.6 19.8 159 2-165 17-176 (222)
6 4a18_J EIF6, translation initi 100.0 1.3E-31 4.5E-36 228.8 10.3 128 38-165 11-140 (248)
7 1g62_A Ribosome anti-associati 100.0 2.5E-31 8.5E-36 224.3 9.3 128 38-165 8-137 (224)
8 1g61_A EIF-6, translation init 100.0 3.5E-29 1.2E-33 211.7 7.2 127 38-165 10-139 (228)
9 3i4a_A N(G),N(G)-dimethylargin 66.5 59 0.002 27.5 12.8 137 7-148 109-261 (308)
10 1jdw_A L-arginine\:glycine ami 62.5 29 0.00098 30.9 8.3 106 13-121 271-391 (423)
11 3j21_T 50S ribosomal protein L 59.5 19 0.00066 25.5 5.3 45 55-121 7-52 (86)
12 1vq8_S 50S ribosomal protein L 58.3 17 0.00057 25.7 4.8 45 55-121 6-51 (85)
13 2zjr_Q 50S ribosomal protein L 56.6 11 0.00036 27.3 3.6 28 94-121 23-51 (95)
14 3r8s_T 50S ribosomal protein L 51.5 22 0.00075 25.5 4.5 45 55-121 11-56 (93)
15 1jdw_A L-arginine\:glycine ami 43.7 1.5E+02 0.005 26.2 9.7 116 44-165 256-390 (423)
16 2zkr_s 60S ribosomal protein L 42.8 36 0.0012 26.8 4.9 46 54-121 76-122 (156)
17 3u5e_X 60S ribosomal protein L 41.3 40 0.0014 26.1 4.9 45 55-121 63-108 (142)
18 1h70_A NG, NG-dimethylarginine 39.6 1.5E+02 0.005 23.8 9.2 147 7-165 74-233 (255)
19 3tve_T 50S ribosomal protein L 38.8 26 0.00088 25.1 3.2 28 94-121 22-50 (92)
20 4a17_R RPL23A, 60S ribosomal p 34.3 58 0.002 25.5 4.8 45 55-121 71-116 (150)
21 3h7c_X Agmatine deiminase; str 34.3 2E+02 0.0069 25.3 9.0 100 17-119 66-206 (383)
22 3iz5_X 60S ribosomal protein L 30.0 62 0.0021 25.3 4.3 45 55-121 73-118 (152)
23 2ad9_A Polypyrimidine tract-bi 27.2 1.4E+02 0.0046 21.6 5.7 48 11-70 39-86 (119)
24 4f25_A Polyadenylate-binding p 27.2 1.2E+02 0.0041 20.9 5.2 56 11-74 13-68 (115)
25 1wg1_A KIAA1579 protein, homol 26.0 1.3E+02 0.0043 19.5 4.9 72 11-97 13-88 (88)
26 1bwd_A ADT, protein (inosamine 26.0 1.9E+02 0.0065 24.5 7.2 105 12-121 195-316 (348)
27 2ghp_A U4/U6 snRNA-associated 25.3 2.5E+02 0.0085 22.1 9.8 95 11-121 49-146 (292)
28 3i4a_A N(G),N(G)-dimethylargin 25.2 1.6E+02 0.0053 24.8 6.4 76 5-82 206-286 (308)
29 3trc_A Phosphoenolpyruvate-pro 24.8 69 0.0024 22.1 3.6 39 69-115 113-151 (171)
30 3ci6_A Phosphoenolpyruvate-pro 24.6 73 0.0025 21.6 3.6 40 68-115 114-153 (171)
31 3bbo_V Ribosomal protein L23; 24.4 42 0.0014 27.4 2.5 46 54-121 114-160 (198)
32 1sjq_A Polypyrimidine tract-bi 23.9 1E+02 0.0034 21.9 4.3 49 11-71 24-72 (105)
33 2nrr_A Uvrabc system protein C 21.6 1E+02 0.0035 24.1 4.2 35 64-98 3-45 (159)
34 2nrt_A Uvrabc system protein C 21.5 1.8E+02 0.0061 23.8 5.9 37 61-97 5-49 (220)
35 1x4c_A Splicing factor, argini 21.4 1.7E+02 0.0058 19.7 5.0 48 11-71 23-70 (108)
36 2e4s_A CAMP and CAMP-inhibited 20.8 84 0.0029 22.2 3.4 39 70-115 128-166 (189)
37 2pju_A Propionate catabolism o 20.8 28 0.00097 28.3 0.8 68 54-125 66-137 (225)
38 2jer_A Agmatine deiminase; hyd 20.7 1.5E+02 0.0051 26.2 5.5 99 18-120 69-202 (389)
39 2cjk_A Nuclear polyadenylated 20.6 2.3E+02 0.0077 19.9 8.6 89 11-117 11-112 (167)
40 2ewo_A Putative agmatine deimi 20.3 1.4E+02 0.0048 26.2 5.3 59 58-120 134-206 (377)
41 1xkn_A Putative peptidyl-argin 20.1 67 0.0023 28.1 3.1 56 60-119 132-200 (355)
No 1
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=5.4e-62 Score=416.33 Aligned_cols=183 Identities=63% Similarity=1.089 Sum_probs=162.9
Q ss_pred CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT 80 (184)
Q Consensus 1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t 80 (184)
|++||+||+|||++++|+|+++||++||++++|.++++|++|+|||++|||++|+|||+++++..+.|+|+|||||++++
T Consensus 65 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~t 144 (248)
T 4a18_J 65 VTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTT 144 (248)
T ss_dssp HCEEETTEEEECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECC
T ss_pred EEEecCCeEEeCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570 81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160 (184)
Q Consensus 81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv 160 (184)
|+|+++||+++++||+|+||||.++++|+++|+++|+|++.+||+|+|.++||+|++|||+||+|||+||++|+++||++
T Consensus 145 Iags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~ 224 (248)
T 4a18_J 145 IANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENI 224 (248)
T ss_dssp BTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHH
T ss_pred cCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCchhHHHHHHHhhhhh
Q psy3570 161 FKLNEAQPSAITTSMRASLIDSI 183 (184)
Q Consensus 161 Lgv~~~~~~~~~~~~~~~~~~~~ 183 (184)
||+.++||++++++||++|||+.
T Consensus 225 l~v~~~~~~~~~~~~~~~~~~~~ 247 (248)
T 4a18_J 225 FKLNEMKDENMDNEMRKDFVMNL 247 (248)
T ss_dssp TTCC-------------------
T ss_pred hCCCCCCchHHHHHHHHHHHhhc
Confidence 99999999999999999999985
No 2
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=1e-56 Score=379.24 Aligned_cols=163 Identities=77% Similarity=1.196 Sum_probs=161.4
Q ss_pred CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT 80 (184)
Q Consensus 1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t 80 (184)
|++||+||+|||++++|+|+++||++||++++|.++++|++++|||++|||++|+|||++++++.+.|+|+||||+++++
T Consensus 62 l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~t 141 (224)
T 1g62_A 62 MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQT 141 (224)
T ss_dssp HCEECSSEEEEETTCCHHHHHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECC
T ss_pred EEEecCceEEcCCcCCHHHHHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570 81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160 (184)
Q Consensus 81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv 160 (184)
|+|+++||+++++||+|+||||+++++|++.|+++|+|++.+||+|+|.++||++++|||+|++|||+||++|+++||++
T Consensus 142 Iag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~ 221 (224)
T 1g62_A 142 ISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESI 221 (224)
T ss_dssp BTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHH
T ss_pred ecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC
Q psy3570 161 FKL 163 (184)
Q Consensus 161 Lgv 163 (184)
|++
T Consensus 222 f~v 224 (224)
T 1g62_A 222 FRL 224 (224)
T ss_dssp TTC
T ss_pred hCc
Confidence 986
No 3
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.6e-48 Score=326.79 Aligned_cols=162 Identities=33% Similarity=0.517 Sum_probs=158.2
Q ss_pred CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT 80 (184)
Q Consensus 1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t 80 (184)
|++||+||+|||+.++|+|+++||+. +++|.+++.|++++||+++|||++|+|||+++++..+.|+|+|||++.+.+
T Consensus 60 ~~~~N~~gllvp~~~~d~e~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~ 136 (222)
T 4adx_I 60 LAVGNSNGFVVSNQAMDREIDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVST 136 (222)
T ss_pred EEEecCCEEEECCCCCHHHHHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEe
Confidence 67999999999999999999999983 799999999999999999999999999999999999999999999999999
Q ss_pred ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570 81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160 (184)
Q Consensus 81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv 160 (184)
+++.+++|+++++||+|+||||.++++|++.|+++|+|++.+||+|+|.++||++++|||+|++|||+||++|+++||++
T Consensus 137 i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~ 216 (222)
T 4adx_I 137 LAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEA 216 (222)
T ss_pred cCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC
Q psy3570 161 FKLNE 165 (184)
Q Consensus 161 Lgv~~ 165 (184)
||+.+
T Consensus 217 f~~~~ 221 (222)
T 4adx_I 217 LGFLE 221 (222)
T ss_pred hcccc
Confidence 99754
No 4
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=8.8e-47 Score=319.42 Aligned_cols=162 Identities=36% Similarity=0.552 Sum_probs=159.0
Q ss_pred CccccCCeEEeCCCCCHHHHHHHHhhC---CCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEE
Q psy3570 1 MSVGNRHGLIVPNATTDTELQHIRNSL---PDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVF 77 (184)
Q Consensus 1 l~~gN~nGllvp~~~~~~E~~~l~~~l---~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi 77 (184)
|++||+||+|||+.++|+|+++||++| |++++|.++++|++++||+++|||++|+|||++ ++..+.|+|+|+|++.
T Consensus 62 ~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~ 140 (228)
T 1g61_A 62 LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVE 140 (228)
T ss_dssp HCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEE
T ss_pred EEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceE
Confidence 578999999999999999999999988 788999999999999999999999999999999 9999999999999999
Q ss_pred EEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcc-eeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHH
Q psy3570 78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP-LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISV 156 (184)
Q Consensus 78 ~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~-v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~ 156 (184)
+.+|++..++|+.++.+|+|+||||+++++|++.|+++|+|+ +.+||+|+|.++||++++|||+|++|||+||++|+++
T Consensus 141 ~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~ 220 (228)
T 1g61_A 141 IGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLI 220 (228)
T ss_dssp ECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHH
T ss_pred EEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q psy3570 157 IESVFKL 163 (184)
Q Consensus 157 IedvLgv 163 (184)
||++|||
T Consensus 221 Ie~~f~v 227 (228)
T 1g61_A 221 IEDALGL 227 (228)
T ss_dssp HHHHHTC
T ss_pred HHHHhcc
Confidence 9999997
No 5
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.2e-32 Score=230.58 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=148.5
Q ss_pred ccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEec-cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570 2 SVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT 80 (184)
Q Consensus 2 ~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~-~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t 80 (184)
+..|+.=.|+|.-.++.-.+.+++.| ++++.+.. .+.+.+|.|+++||+++++||..+++..+.|++ ++|++.+++
T Consensus 17 ~~~t~~~~lv~~~~~~~~~~~~~~~L--~v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~v~V~~~~ 93 (222)
T 4adx_I 17 ISVTDSVALIPQNTPEKFEGVLREAL--EVEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AGVEAVRIP 93 (222)
T ss_pred EEEeCCEEEEcCCCCHHHHHHHHHHh--CCcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cCCeEEEEC
Confidence 34567778999999999999999987 46665543 588999999999999999999999999999999 599999999
Q ss_pred ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570 81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160 (184)
Q Consensus 81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv 160 (184)
++++.+|.++++||+|+||||+++++|++.|+++|||++.++++ ++.+++||.++|||+|++|||++|++|++.|+|+
T Consensus 94 -~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~ 171 (222)
T 4adx_I 94 -ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALLNPQASSEEIGIIEDT 171 (222)
T ss_pred -CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEec-CCccceEEEEEEeCceEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 8899999999999999999999999999999999
Q ss_pred hCCCC
Q psy3570 161 FKLNE 165 (184)
Q Consensus 161 Lgv~~ 165 (184)
|+|+.
T Consensus 172 L~V~v 176 (222)
T 4adx_I 172 LGVEA 176 (222)
T ss_pred hCCCE
Confidence 99996
No 6
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=99.97 E-value=1.3e-31 Score=228.83 Aligned_cols=128 Identities=15% Similarity=0.203 Sum_probs=123.7
Q ss_pred cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570 38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL 115 (184)
Q Consensus 38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~ 115 (184)
++.+.+|+|+++||+||++||+.+++..+.|++.|+ +|+++|+|+|+++||+|++||+||+|||+.++|+|++.|++.
T Consensus 11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 90 (248)
T 4a18_J 11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS 90 (248)
T ss_dssp TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence 578999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570 116 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 165 (184)
Q Consensus 116 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~ 165 (184)
|+-.+...++..+.+++|+.++|||++|+|||+++++..+.|+|+|||++
T Consensus 91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV 140 (248)
T 4a18_J 91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEV 140 (248)
T ss_dssp SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEE
T ss_pred CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcE
Confidence 87666667999999999999999999999999999999999999999997
No 7
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=99.97 E-value=2.5e-31 Score=224.33 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=124.0
Q ss_pred cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570 38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL 115 (184)
Q Consensus 38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~ 115 (184)
++.+.+|+|+++||+||++||+.+++..+.|++.|+ +|+++++|+|++++|+|++||+||+|||+.++|+|++.|++.
T Consensus 8 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~ 87 (224)
T 1g62_A 8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS 87 (224)
T ss_dssp TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhh
Confidence 578999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570 116 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 165 (184)
Q Consensus 116 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~ 165 (184)
|+..+...++..+.+++|+.++|||++|+|||+++++..+.|+|+|||+.
T Consensus 88 l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV 137 (224)
T 1g62_A 88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV 137 (224)
T ss_dssp SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred CCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcE
Confidence 77777777999999999999999999999999999999999999999997
No 8
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=99.95 E-value=3.5e-29 Score=211.72 Aligned_cols=127 Identities=16% Similarity=0.271 Sum_probs=118.5
Q ss_pred cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcC
Q psy3570 38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117 (184)
Q Consensus 38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~ 117 (184)
++.+.+|+|+++||+||++||+.+++..+.|++.|++|+++++|+|++++|+|+++|++|+||||.++|+|++.|++.|+
T Consensus 10 ~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~ 89 (228)
T 1g61_A 10 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK 89 (228)
T ss_dssp TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ---cceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570 118 ---IPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 165 (184)
Q Consensus 118 ---V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~ 165 (184)
.++....+..+.+++|+.+++||+|++|||++ ++..+.|+|+|+++.
T Consensus 90 ~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV 139 (228)
T 1g61_A 90 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEV 139 (228)
T ss_dssp HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEE
T ss_pred ccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCce
Confidence 33334467789999999999999999999999 777799999999985
No 9
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=66.52 E-value=59 Score=27.46 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=83.6
Q ss_pred CeEEeCCCCCH---HHHHHHHhhC-CCCceEEEecc---ccccceeEEEeeCcEEE-EcCCCChhHHHHHhhhc-CceEE
Q psy3570 7 HGLIVPNATTD---TELQHIRNSL-PDSVKLQRVEE---RLSALGNVIACNDYVAL-VHPDLDRETEEILADTL-NVEVF 77 (184)
Q Consensus 7 nGllvp~~~~~---~E~~~l~~~l-~~~~~v~~l~~---k~~~iGn~i~aNd~~al-Vpp~~~~~~~~~I~e~L-gVevi 77 (184)
+|+++.++..+ .|...++..+ ..+.++..++. .... |.++..++.+.+ ++.--+++.++.+++.| +.+|+
T Consensus 109 ~~vii~~m~~~~Rr~E~~~~~~~l~~~g~~i~~~~~~~~~lEG-GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~~~Vv 187 (308)
T 3i4a_A 109 ETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDG-GDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVS 187 (308)
T ss_dssp TEEEECCCSSGGGGGGHHHHHHHHHTTTCEEEECCCTTCCCCG-GGEEECSSCEEEEESSSCCHHHHHHHHHHTTTSCEE
T ss_pred CEEEEeCCCchhhhhhHHHHHHHHHHCCCeEEEccCCCCcCcc-ceEEEECCEEEEEEchhcCHHHHHHHHHHcCCCeEE
Confidence 57888877443 3444444333 12567766543 3333 889988876333 46667788899999999 87777
Q ss_pred EEeec-CceeeeeEEEEcCCeEEeCCCC-CHHHHHHHhhh--cCcceeeEeeccCCcceeeEEEEc--Cc-eEEEcCC
Q psy3570 78 RQTVS-SNVLVGSYCALTNQGGLVHPHT-SPQDQDELSSL--LQIPLVAGTVNRGSEVIGAGMVVN--DW-AAFCGFD 148 (184)
Q Consensus 78 ~~tIa-gs~lVGsl~v~Nn~G~LV~p~~-~d~El~~l~~~--l~V~v~~gtvn~g~~~VGs~ivaN--d~-GalV~p~ 148 (184)
...+. -.-+=..++....+-++++|+. .++.++.+++. .+-+++ .+.. .+-+|.+..| ++ +.++.|.
T Consensus 188 ~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~~~~~iI--~vpe--~~a~N~L~ln~~~~~~vvi~~~ 261 (308)
T 3i4a_A 188 TVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKL--TVPD--DIAANCIYLNIPNKGHVLLHRT 261 (308)
T ss_dssp EEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCSSCCEEE--EESS--GGGGCCEEEEETTTEEEEEEEC
T ss_pred EEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhccCCCEEE--ECCh--HHhCCEEEEccCCCCCEEEecC
Confidence 66543 4455667777677778887654 45556777653 244444 3322 2444555666 33 6888763
No 10
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=62.49 E-value=29 Score=30.89 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHhhCCCCceEEEeccccccce----eEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCce---
Q psy3570 13 NATTDTELQHIRNSLPDSVKLQRVEERLSALG----NVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNV--- 85 (184)
Q Consensus 13 ~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iG----n~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~--- 85 (184)
...+.+.++.|++.|+.+..|..++......+ .+..+.+..+++.|+..++..+.+++. +.+++..+.....
T Consensus 271 ~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~-~~~iI~~p~~~~~~~~ 349 (423)
T 1jdw_A 271 QVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA-GWTIITPPTPIIPDDH 349 (423)
T ss_dssp SSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT-TCEEECCCCCCCCTTS
T ss_pred ccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC-CCEEEECCCchhcccc
Confidence 34567888999998853567777765432222 377888888888888877777777764 7777776654322
Q ss_pred --------eeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCccee
Q psy3570 86 --------LVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLV 121 (184)
Q Consensus 86 --------lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~ 121 (184)
+=.-+...|...+|+ |.-.+.-.+.|++. |.++.
T Consensus 350 ~~~~s~~~~~~N~L~inpg~VI~-~~~~~~~~~~L~~~-G~~Vi 391 (423)
T 1jdw_A 350 PLWMSSKWLSMNVLMLDEKRVMV-DANEVPIQKMFEKL-GITTI 391 (423)
T ss_dssp CCSSSCGGGGGCCEEEETTEEEE-ETTCHHHHHHHHHT-TCEEE
T ss_pred ccccccccceeeEEEECCCEEEE-eCCCHHHHHHHHHC-CCEEE
Confidence 112233345555554 55567777888876 77765
No 11
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.51 E-value=19 Score=25.49 Aligned_cols=45 Identities=9% Similarity=0.268 Sum_probs=36.1
Q ss_pred EEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 55 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 55 lVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
|..|-++++..+.+++. |-.-+.|+|.++..|++ .++++++|+|.
T Consensus 7 Ik~P~iTEKa~~~~e~~----------------------n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~ 52 (86)
T 3j21_T 7 IIRPVVTEKAISLIEKE----------------------NKLTFIVDRRATKQDIKRAVEEIFNVKVE 52 (86)
T ss_dssp EEECCCSHHHHHHHHTS----------------------CEEEEEECTTCCHHHHHHHHHHHTTCCEE
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHcCCCce
Confidence 56677888887777653 55678999999999998 67778999975
No 12
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=58.32 E-value=17 Score=25.72 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=34.2
Q ss_pred EEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 55 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 55 lVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
+..|-++++....+++- |-.-+.|+|.++..|++ .++++++|+|.
T Consensus 6 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~qIK~ave~lf~VkV~ 51 (85)
T 1vq8_S 6 IKHPHVTEKAMNDMDFQ----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVE 51 (85)
T ss_dssp EEEECCSHHHHHHHHHS----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEE
T ss_pred eeccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCCce
Confidence 45567777777766532 44678999999999998 67778999975
No 13
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=56.61 E-value=11 Score=27.28 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=24.4
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 94 TNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 94 Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
|+.-+.|+|.++..|++ .++++++|+|.
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~ 51 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVI 51 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCce
Confidence 56889999999999998 67778999975
No 14
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=51.46 E-value=22 Score=25.49 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=33.8
Q ss_pred EEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 55 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 55 lVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
|..|-++++....+++. |-.-+.|+|.++..|++ .++++++|+|.
T Consensus 11 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~eIK~AVE~lf~VkV~ 56 (93)
T 3r8s_T 11 LRAPHVSEKASTAMEKS----------------------NTIVLKVAKDATKAEIKAAVQKLFEVEVE 56 (93)
T ss_dssp EEEECCSHHHHHHHHTT----------------------SEEEEEECSSCCHHHHHHHHHHHSCCCCC
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHcCCceE
Confidence 44566666666665542 55678999999999998 67788999975
No 15
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=43.72 E-value=1.5e+02 Score=26.25 Aligned_cols=116 Identities=8% Similarity=0.013 Sum_probs=73.0
Q ss_pred eeEEEeeCcEEEEcCC--CChhHHHHHhhhcC--ceEEEEeecC---ceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhc
Q psy3570 44 GNVIACNDYVALVHPD--LDRETEEILADTLN--VEVFRQTVSS---NVLVGSYCALTNQGGLVHPHTSPQDQDELSSLL 116 (184)
Q Consensus 44 Gn~i~aNd~~alVpp~--~~~~~~~~I~e~Lg--Vevi~~tIag---s~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l 116 (184)
|.+....+ .+++.-. .+++.++.+++.|+ .+|+...+.+ ..+=..++.....-++++|...++.++.|++.
T Consensus 256 GDvl~~G~-~llvg~s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~- 333 (423)
T 1jdw_A 256 ADFIRAGR-DIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA- 333 (423)
T ss_dssp GGEEEETT-EEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT-
T ss_pred ceeEEeCC-EEEEEecccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC-
Confidence 44544443 5565433 36778888999994 6777777653 23335677777888899999877777777764
Q ss_pred CcceeeEeeccCCc------------ceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570 117 QIPLVAGTVNRGSE------------VIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 165 (184)
Q Consensus 117 ~V~v~~gtvn~g~~------------~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~ 165 (184)
+.++. .+..... +-.|.+..|.. .++-|.-.....+.+++. |+++
T Consensus 334 ~~~iI--~~p~~~~~~~~~~~~s~~~~~~N~L~inpg-~VI~~~~~~~~~~~L~~~-G~~V 390 (423)
T 1jdw_A 334 GWTII--TPPTPIIPDDHPLWMSSKWLSMNVLMLDEK-RVMVDANEVPIQKMFEKL-GITT 390 (423)
T ss_dssp TCEEE--CCCCCCCCTTSCCSSSCGGGGGCCEEEETT-EEEEETTCHHHHHHHHHT-TCEE
T ss_pred CCEEE--ECCCchhccccccccccccceeeEEEECCC-EEEEeCCCHHHHHHHHHC-CCEE
Confidence 55554 2222111 23455577754 444566677777888876 6654
No 16
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.83 E-value=36 Score=26.79 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=38.3
Q ss_pred EEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 54 ALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 54 alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
.|..|-++++....+++. |-.-+.|++.++..|++ .++++++|+|.
T Consensus 76 iIk~PliTEKa~~~~E~~----------------------n~yvF~Vd~~AnK~qIK~AVEklf~VkV~ 122 (156)
T 2zkr_s 76 IIKFPLTTESAMKKIEDN----------------------NTLVFIVDVKANKHQIKQAVKKLYDIDVA 122 (156)
T ss_dssp CEEEECCSHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEE
T ss_pred hHhcccccHHHHHHHHhC----------------------CcEEEEEECCCCHHHHHHHHHHHhCCcce
Confidence 566788899998888872 44779999999999988 67788999985
No 17
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=41.31 E-value=40 Score=26.12 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=36.7
Q ss_pred EEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 55 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 55 lVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
|..|-++|+....+++. |-.-|.|++.++..|++ .++++++|+|.
T Consensus 63 Ik~PliTEKa~~~~E~~----------------------N~~vF~Vd~~AnK~qIK~AVEklf~VkV~ 108 (142)
T 3u5e_X 63 IEQPITSETAMKKVEDG----------------------NILVFQVSMKANKYQIKKAVKELYEVDVL 108 (142)
T ss_dssp EEEECCCHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHSCCEE
T ss_pred hhcCCcCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCcee
Confidence 56678888888887773 45568999999999998 67788999986
No 18
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=39.61 E-value=1.5e+02 Score=23.84 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=85.1
Q ss_pred CeEEeCCCCC---HHHHHHHHhhCC-CC-ceEEEeccc--cccceeEEEeeCcEEEEcC--CCChhHHHHHhhhc---Cc
Q psy3570 7 HGLIVPNATT---DTELQHIRNSLP-DS-VKLQRVEER--LSALGNVIACNDYVALVHP--DLDRETEEILADTL---NV 74 (184)
Q Consensus 7 nGllvp~~~~---~~E~~~l~~~l~-~~-~~v~~l~~k--~~~iGn~i~aNd~~alVpp--~~~~~~~~~I~e~L---gV 74 (184)
+|+++.++.. ..|...++..+. .+ ..+..++.. ..- |.+...++. +++.. --+++..+.+++.| |.
T Consensus 74 ~~~~~~~m~~~~R~~E~~~~~~~l~~~g~~~v~~~~~~~~lEG-Gdv~~~g~~-~~vg~s~Rt~~~~~~~l~~~l~~~g~ 151 (255)
T 1h70_A 74 RCAIITRPGAESRRGETEIIEETVQRFYPGKVERIEAPGTVEA-GDIMMVGDH-FYIGESARTNAEGARQMIAILEKHGL 151 (255)
T ss_dssp SCEEECBCSSGGGTTHHHHHHHHHHHHSTTCEEECCTTCCBCG-GGEEEETTE-EEEEECSSSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEeCCCChHHhchHHHHHHHHHHcCCCcEEEeCCCceEec-ceEEEECCE-EEEEEccCCcHHHHHHHHHHHhhCCC
Confidence 4677766633 334333333221 13 455544432 222 666666544 56543 34677789999999 99
Q ss_pred eEEEEeecC-ceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHH
Q psy3570 75 EVFRQTVSS-NVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTE 153 (184)
Q Consensus 75 evi~~tIag-s~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~E 153 (184)
+|+...+.+ ..+=..+.....+-++++|...+++ .++ +.++. ++.....+-.|.+..| |.++-|.....-
T Consensus 152 ~vi~~~~~~~~HlD~~~~~v~~~~~~~~~~~~~~~--~~~---~~~ii--~~~~~e~~~~N~l~i~--~~Vi~~~~~~~~ 222 (255)
T 1h70_A 152 SGSVVRLEKVLHLKTGLAYLEHNNLLAAGEFVSKP--EFQ---DFNII--EIPEEESYAANCIWVN--ERVIMPAGYPRT 222 (255)
T ss_dssp EEEEEECSSSSSGGGSEEECSTTEEEECGGGTTCG--GGT---TSEEE--ECCGGGGGGGCCEEET--TEEEEESSCHHH
T ss_pred EEEEEECCCCcchhheeeecCCCEEEEECCcCCHh--HhC---ceEEE--ECCCcccccccEEEEC--CEEEeCCCCHHH
Confidence 988877653 3344456666777788888775543 222 44544 3332223445555777 577777777766
Q ss_pred HHHHHHHhCCCC
Q psy3570 154 ISVIESVFKLNE 165 (184)
Q Consensus 154 l~~IedvLgv~~ 165 (184)
.+.+++. |.++
T Consensus 223 ~~~l~~~-g~~v 233 (255)
T 1h70_A 223 REKIARL-GYRV 233 (255)
T ss_dssp HHHHHTT-TCEE
T ss_pred HHHHHHC-CCeE
Confidence 6777765 6654
No 19
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=38.77 E-value=26 Score=25.05 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.6
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 94 TNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 94 Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
|-.-+.|+|.++..|++ .++++++|+|.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~ 50 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVV 50 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCcee
Confidence 44568999999999998 67888999975
No 20
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=34.34 E-value=58 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=35.3
Q ss_pred EEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 55 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 55 lVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
|..|-++++....+++. |-.-|.|++.++..|++ .++++++|+|.
T Consensus 71 Ik~PliTEKa~~~~E~~----------------------N~~vF~Vd~kAnK~qIK~AVEklf~VkV~ 116 (150)
T 4a17_R 71 VKTPLTTEKAMKKMEDE----------------------NTMVFYVHNRSTKPQIKSAFEKLYNVKVR 116 (150)
T ss_dssp EEEECCSHHHHHHHHHS----------------------SEEEEEECTTCCHHHHHHHHHHHHCCCEE
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCcee
Confidence 55677788877777643 34458999999999998 67888999986
No 21
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=34.32 E-value=2e+02 Score=25.35 Aligned_cols=100 Identities=17% Similarity=0.301 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCCCCceEEEeccccccc---eeEEEeeCc----------EEEE----------------cCCCChhHHHH
Q psy3570 17 DTELQHIRNSLPDSVKLQRVEERLSAL---GNVIACNDY----------VALV----------------HPDLDRETEEI 67 (184)
Q Consensus 17 ~~E~~~l~~~l~~~~~v~~l~~k~~~i---Gn~i~aNd~----------~alV----------------pp~~~~~~~~~ 67 (184)
+++.+..++.|+..|.+..++...+.+ |=....|++ .+.+ +.+.+....++
T Consensus 66 ~~~~~~a~~~l~~~v~~~~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~ 145 (383)
T 3h7c_X 66 PAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRK 145 (383)
T ss_dssp GGGHHHHHHHSCTTSEEEECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHH
T ss_pred HHHHHHHHHhccCCcEEEEcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHH
Confidence 445556677776678888887766543 444444443 3443 33556677888
Q ss_pred HhhhcCceEEEEeecCceeeeeEEEEcCCeEEe-----------CCCCCHHHHH-HHhhhcCcc
Q psy3570 68 LADTLNVEVFRQTVSSNVLVGSYCALTNQGGLV-----------HPHTSPQDQD-ELSSLLQIP 119 (184)
Q Consensus 68 I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV-----------~p~~~d~El~-~l~~~l~V~ 119 (184)
|.+.++++.++..+ -+=|=.+-.|-.|-|+ .|..+.+|++ .|++.||++
T Consensus 146 v~~~~g~~~~~~~l---VlEGGsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~ 206 (383)
T 3h7c_X 146 ILALERIPRFQHSM---ILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQ 206 (383)
T ss_dssp HHHHHTCCEEEEEE---ECCGGGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHHhCCCcccCCe---eecCCcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCc
Confidence 99999999877542 1112222336666555 7899999998 589999997
No 22
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=29.99 E-value=62 Score=25.32 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=36.5
Q ss_pred EEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 55 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 55 lVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
|..|-++|+....+++. |-.-|.|++.++..|++ .++++++|.|.
T Consensus 73 Ik~PliTEKa~~~~E~~----------------------N~~vF~Vd~~AnK~qIK~AVEklf~VkV~ 118 (152)
T 3iz5_X 73 LKYPLTTESAMKKIEDN----------------------NTLVFIVDLKADKKKIKAAVKKMYDIQAK 118 (152)
T ss_dssp EEEECCSHHHHHHHHHH----------------------SEEEEEECSSCCSHHHHHHHHHHHTCCEE
T ss_pred HhhCCcCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCcce
Confidence 66788899988887753 34458999999999998 67788999986
No 23
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.22 E-value=1.4e+02 Score=21.65 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=33.3
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhh
Q psy3570 11 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILAD 70 (184)
Q Consensus 11 vp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e 70 (184)
||+.++++||+.+-...+.=.++.++..| -+|+|--+-.++..+.++.
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~k------------G~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKGK------------NQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGGG------------TEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCCC------------CEEEEEECCHHHHHHHHHH
Confidence 68889999999887654322455555443 4799988777777777763
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=27.20 E-value=1.2e+02 Score=20.89 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=36.8
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCc
Q psy3570 11 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNV 74 (184)
Q Consensus 11 vp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgV 74 (184)
||..+++++|+.+-...+.=..+.++.++... =-||+|-..-.++..+.|++.=|.
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~--------kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVCDENGS--------KGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE--------EEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeecCCCC--------CceEEEEECCHHHHHHHHHHcCCC
Confidence 68899999999887764321345555443221 137999988777777777765443
No 25
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=26.02 E-value=1.3e+02 Score=19.51 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=40.0
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCc----eEEEEeecCcee
Q psy3570 11 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNV----EVFRQTVSSNVL 86 (184)
Q Consensus 11 vp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgV----evi~~tIags~l 86 (184)
+|+.+++++|+.+-... .=..+. ++ -+--+|+|--.-.++..+.++..=|. ..++...+....
T Consensus 13 Lp~~~t~~~l~~~F~~~-~v~~~~-i~-----------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 13 LPQDSNCQEVHDLLKDY-DLKYCY-VD-----------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCSSCCHHHHHHHTCSS-CCCCEE-EE-----------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCCHHHHHHHHhhC-CeEEEE-Ee-----------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 58889999998776542 111222 21 23358999888766766776644332 233444443322
Q ss_pred eeeEEEEcCCe
Q psy3570 87 VGSYCALTNQG 97 (184)
Q Consensus 87 VGsl~v~Nn~G 97 (184)
.+++.|+.|
T Consensus 80 --~~~~~n~~g 88 (88)
T 1wg1_A 80 --LLCSGPSSG 88 (88)
T ss_dssp --CCSCCCTTC
T ss_pred --eEecCCCCC
Confidence 345556554
No 26
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=25.97 E-value=1.9e+02 Score=24.48 Aligned_cols=105 Identities=10% Similarity=0.120 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHhhCCCCceEEEeccccccce----eEEEeeCcEEEEcCCCChhHHHHHhhhc-CceEEEEeecCc--
Q psy3570 12 PNATTDTELQHIRNSLPDSVKLQRVEERLSALG----NVIACNDYVALVHPDLDRETEEILADTL-NVEVFRQTVSSN-- 84 (184)
Q Consensus 12 p~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iG----n~i~aNd~~alVpp~~~~~~~~~I~e~L-gVevi~~tIags-- 84 (184)
+.-.+.+.++.|++.|+.+..+..++.. ...+ .+..+.+..+++.|+..+.. .+.+.| +.+++..+-...
T Consensus 195 s~Rt~~~~ie~l~~~l~~~~~v~~~~~~-~~~~HlDt~~~~v~~~~vl~~~~~~~~~--~~~~~L~~~~iI~~~~~~~~~ 271 (348)
T 1bwd_A 195 SDSGNELGAKWLQSAVGDTYTVHPCRKL-YASTHVDSTIVPLRPGLVLTNPSRVNDE--NMPDFLRSWENITCPELVDIG 271 (348)
T ss_dssp BTTBCHHHHHHHHHHHCTTSEEEEESSS-CCSSCGGGTEEEEETTEEEECTTTCCTT--TSCGGGTTSEEEECCCCCCCC
T ss_pred cccCCHHHHHHHHHHhcCCcEEEEecCC-CCCcchhheEEecCCCEEEEeCCCCCcH--HHHHHhcCCEEEECCCccccc
Confidence 3445788889999988545566666554 2222 37777777777777763321 122333 467776651110
Q ss_pred ---------eeeeeEEE-EcCCeEEeCCCCCHHHHHHHhhhcCccee
Q psy3570 85 ---------VLVGSYCA-LTNQGGLVHPHTSPQDQDELSSLLQIPLV 121 (184)
Q Consensus 85 ---------~lVGsl~v-~Nn~G~LV~p~~~d~El~~l~~~l~V~v~ 121 (184)
...|+-+. .|+..+++ |...+.-.+.|++. |.++.
T Consensus 272 ~~~~~~~~~~w~~~N~l~i~~~~Vi~-~~~~~~~~~~L~~~-G~~vi 316 (348)
T 1bwd_A 272 FTGDKPHCSVWIGMNLLVVRPDLAVV-DRRQTALIRLLEKH-GMNVL 316 (348)
T ss_dssp CCSSSCSSCGGGGGCCEEEETTEEEE-ETTCHHHHHHHHHT-TCEEE
T ss_pred cccccccccccceeeEEEEcCCEEEE-cCCCHHHHHHHHHC-CCEEE
Confidence 00133332 34444554 45677777888876 87776
No 27
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=25.30 E-value=2.5e+02 Score=22.05 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=54.6
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeE
Q psy3570 11 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSY 90 (184)
Q Consensus 11 vp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl 90 (184)
+|..+++++|+.+-+..+.=..+..+..+.. +-.+|+|--.-.++..+.++ .=|.. +.|.++-=.
T Consensus 49 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--------~~g~afV~f~~~~~A~~A~~-~~~~~-----~~g~~i~v~- 113 (292)
T 2ghp_A 49 LPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--------NFRFARIEFARYDGALAAIT-KTHKV-----VGQNEIIVS- 113 (292)
T ss_dssp ECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--------SSEEEEEEESSHHHHHHHHT-TTTCE-----ETTEECEEE-
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--------CcEEEEEEECCHHHHHHHHH-hCCcE-----eCCcEEEEE-
Confidence 6889999999988765432234444443322 23688888887777777773 22221 122211100
Q ss_pred EEEcCCeEE---eCCCCCHHHHHHHhhhcCccee
Q psy3570 91 CALTNQGGL---VHPHTSPQDQDELSSLLQIPLV 121 (184)
Q Consensus 91 ~v~Nn~G~L---V~p~~~d~El~~l~~~l~V~v~ 121 (184)
-.+++-+. +|+.++++++..+-.-+|.++.
T Consensus 114 -~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~ 146 (292)
T 2ghp_A 114 -HLTECTLWMTNFPPSYTQRNIRDLLQDINVVAL 146 (292)
T ss_dssp -ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCC
T ss_pred -ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeE
Confidence 01222222 4899999999988777774433
No 28
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=25.16 E-value=1.6e+02 Score=24.79 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=45.6
Q ss_pred cCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEee----CcEEEEc-CCCChhHHHHHhhhcCceEEEE
Q psy3570 5 NRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACN----DYVALVH-PDLDRETEEILADTLNVEVFRQ 79 (184)
Q Consensus 5 N~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aN----d~~alVp-p~~~~~~~~~I~e~LgVevi~~ 79 (184)
...-++-|+....+.++.|++....+.++-.++. ...+|++..| .++.++| +.-.+...+.+++.-|.+++..
T Consensus 206 ~~~~lv~~~~~~~~~l~~l~~~~~~~~~iI~vpe--~~a~N~L~ln~~~~~~vvi~~~~~~~p~~~~~l~~l~g~~vi~v 283 (308)
T 3i4a_A 206 PNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPD--DIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPV 283 (308)
T ss_dssp TTEEEEECSHHHHHHHHHHHHTCSSCCEEEEESS--GGGGCCEEEEETTTEEEEEEECTTTCHHHHHHHHHCTTEEEEEE
T ss_pred CCEEEEECchhcHHHHHHHHhhccCCCEEEECCh--HHhCCEEEEccCCCCCEEEecCcccCcccHHHHHhcCCCEEEEe
Confidence 3344555766777788888874322456655654 3678888887 2455554 3333455666654337787776
Q ss_pred eec
Q psy3570 80 TVS 82 (184)
Q Consensus 80 tIa 82 (184)
.+.
T Consensus 284 d~s 286 (308)
T 3i4a_A 284 SMS 286 (308)
T ss_dssp CCH
T ss_pred cHH
Confidence 543
No 29
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=24.77 E-value=69 Score=22.13 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=28.2
Q ss_pred hhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570 69 ADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL 115 (184)
Q Consensus 69 ~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~ 115 (184)
...+.+|+. .+..++|.+++.+..+ ...+++|++.++.+
T Consensus 113 ~s~l~vPl~----~~~~~~Gvl~~~~~~~----~~f~~~d~~~l~~l 151 (171)
T 3trc_A 113 HGFLGIPII----EQGELLGILVIQQLES----HHFAEEEEAFCVTL 151 (171)
T ss_dssp CEEEEEEEE----ETTEEEEEEEEEESSS----CCCCHHHHHHHHHH
T ss_pred cEEEEEeEE----ECCEEEEEEEEeecCC----CCCCHHHHHHHHHH
Confidence 445556654 3567999999998763 56789999887754
No 30
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=24.63 E-value=73 Score=21.63 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=28.5
Q ss_pred HhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570 68 LADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL 115 (184)
Q Consensus 68 I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~ 115 (184)
+...+.+|+. .+..++|.+++.+..+ ...++++++.++.+
T Consensus 114 ~~s~l~vPl~----~~~~~~Gvl~l~~~~~----~~f~~~~~~~l~~l 153 (171)
T 3ci6_A 114 YNSFLGVPVM----YRRKVMGVLVVQNKQP----QDFSEAAESFLVTL 153 (171)
T ss_dssp CCEEEEEEEE----ETTEEEEEEEEEESSC----CCCCHHHHHHHHHH
T ss_pred cceEEEEeEE----ECCEEEEEEEEecCCC----CCCCHHHHHHHHHH
Confidence 3445555554 3678999999998854 56888888877654
No 31
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.38 E-value=42 Score=27.41 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=34.6
Q ss_pred EEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q psy3570 54 ALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV 121 (184)
Q Consensus 54 alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~-~l~~~l~V~v~ 121 (184)
.|..|-++|+..+.+++ -|-..+.|++.++..|++ .++++++|+|.
T Consensus 114 IIk~PvITEKAmkliE~----------------------nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~ 160 (198)
T 3bbo_V 114 ILQSPIITEAAIKNIAD----------------------ENSLLFTVDVRADKKMIREAISNFFGVKVR 160 (198)
T ss_dssp CBCCCCCCHHHHHHHHT----------------------SCEECCEECTTCCHHHHHHTTTTTSCCCEE
T ss_pred eeeccccCHHHHHHHHh----------------------CCEEEEEECCCCCHHHHHHHHHHHhCCcee
Confidence 45566777777666664 134679999999999998 56778999986
No 32
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.93 E-value=1e+02 Score=21.95 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=33.9
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhh
Q psy3570 11 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADT 71 (184)
Q Consensus 11 vp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~ 71 (184)
||+.+++++|+.+-+..+.=.++.++.+| -||+|--.-.++..+.|+..
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~~v~i~~~k------------GfaFVeF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVTNLLMLKGK------------NQAFIEMNTEEAANTMVNYY 72 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEEEEEEETTT------------TEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcCC------------CEEEEEECCHHHHHHHHHHh
Confidence 58899999999876653322445555432 48999888777777777754
No 33
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=21.62 E-value=1e+02 Score=24.13 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=22.8
Q ss_pred HHHHHhhhcCceE----EE---E-eecCceeeeeEEEEcCCeE
Q psy3570 64 TEEILADTLNVEV----FR---Q-TVSSNVLVGSYCALTNQGG 98 (184)
Q Consensus 64 ~~~~I~e~LgVev----i~---~-tIags~lVGsl~v~Nn~G~ 98 (184)
..+.+++.|+.+- ++ . .++|+..|||++|..+.+.
T Consensus 3 ~l~~L~~~L~L~~~P~RIE~fDiSh~~G~~~VasmVVf~~g~p 45 (159)
T 2nrr_A 3 ALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFP 45 (159)
T ss_dssp HHHHHHHHTTCSSCCCEEEEEEEECC---CCEEEEEEEETTEE
T ss_pred HHHHHHHHhCCCCCCCEEEEEECCccCCccceEEEEEEeCCcc
Confidence 4577888998642 22 2 4899999999999866543
No 34
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=21.54 E-value=1.8e+02 Score=23.77 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=28.0
Q ss_pred ChhHHHHHhhhcCceE----EEE----eecCceeeeeEEEEcCCe
Q psy3570 61 DRETEEILADTLNVEV----FRQ----TVSSNVLVGSYCALTNQG 97 (184)
Q Consensus 61 ~~~~~~~I~e~LgVev----i~~----tIags~lVGsl~v~Nn~G 97 (184)
-....+.+++.|+.+- +++ .++|+..|||++|..+-+
T Consensus 5 ~~~~l~~L~~~l~l~~~p~rIE~fDiSh~~G~~~V~smVvf~~g~ 49 (220)
T 2nrt_A 5 RKEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGF 49 (220)
T ss_dssp CHHHHHHHHHHTTCSSCCCEEEEEEEEEETTTEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEECCccCCccceEEEEEEeCCc
Confidence 3456788999998652 332 599999999999986644
No 35
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.38 E-value=1.7e+02 Score=19.71 Aligned_cols=48 Identities=8% Similarity=0.013 Sum_probs=31.3
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhh
Q psy3570 11 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADT 71 (184)
Q Consensus 11 vp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~ 71 (184)
||..+++++|+.+-...+.=..+.++.. -||+|-..-.++..+.|+..
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~-------------g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD-------------GTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT-------------TEEEEEESSHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC-------------CEEEEEECCHHHHHHHHHHH
Confidence 5888999999987765331122222222 68999887777777777653
No 36
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=20.82 E-value=84 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=28.2
Q ss_pred hhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570 70 DTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL 115 (184)
Q Consensus 70 e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~ 115 (184)
..|.||+. .+..++|.+.+.+... ++..++++++.++.+
T Consensus 128 s~l~vPl~----~~~~~iGvl~l~~~~~---~~~f~~~d~~ll~~l 166 (189)
T 2e4s_A 128 NILCMPIV----SRGSVIGVVQMVNKIS---GSAFSKTDENNFKMF 166 (189)
T ss_dssp CEEEEEEE----ETTEEEEEEEEEEETT---SSSCCHHHHHHHHHH
T ss_pred eEEEEEec----cCCeEEEEEEEEeCCC---CCCCCHHHHHHHHHH
Confidence 34556654 3678999999988764 237889999887754
No 37
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.77 E-value=28 Score=28.30 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=50.2
Q ss_pred EEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEE----cCCeEEeCCCCCHHHHHHHhhhcCcceeeEee
Q psy3570 54 ALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCAL----TNQGGLVHPHTSPQDQDELSSLLQIPLVAGTV 125 (184)
Q Consensus 54 alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~----Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtv 125 (184)
++++.+. +.+.|++.+++||+...+.+.-++=++.-+ +.-|++-++.... +++.+.+.|++++..-++
T Consensus 66 VIISRGg---ta~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~-~~~~i~~ll~~~i~~~~~ 137 (225)
T 2pju_A 66 AIIAAGS---NGAYLKSRLSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIP-ALVAFQKTFNLRLDQRSY 137 (225)
T ss_dssp EEEEEHH---HHHHHHTTCSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCH-HHHHHHHHHTCCEEEEEE
T ss_pred EEEeCCh---HHHHHHhhCCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhh-HHHHHHHHhCCceEEEEe
Confidence 8888775 778889999999999999887765444433 2335555666654 588899999999876555
No 38
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=20.71 E-value=1.5e+02 Score=26.23 Aligned_cols=99 Identities=22% Similarity=0.349 Sum_probs=61.2
Q ss_pred HHHHHHHhhCCCCceEEEeccccccc---eeEEEeeCcE--EEE----------------cCCCChhHHHHHhhhcCceE
Q psy3570 18 TELQHIRNSLPDSVKLQRVEERLSAL---GNVIACNDYV--ALV----------------HPDLDRETEEILADTLNVEV 76 (184)
Q Consensus 18 ~E~~~l~~~l~~~~~v~~l~~k~~~i---Gn~i~aNd~~--alV----------------pp~~~~~~~~~I~e~LgVev 76 (184)
++.+..++.|+.++.+..++...... |-....+++. +.+ +.+.++...+.+.+.+|+++
T Consensus 69 ~~~~~a~~~l~~~V~~~~~~~~D~W~RD~GP~~v~~~~g~~~~vdf~FN~WGg~~~g~~~~~~~D~~v~~~~~~~~g~~~ 148 (389)
T 2jer_A 69 QQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDS 148 (389)
T ss_dssp TTHHHHHHHSCTTSEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCE
T ss_pred HHHHHHHHHccCCcEEEEcCCCCEecccccceEEecCCCCEEEEEeecccccccccccccCccchHHHHHHHHHHcCCCe
Confidence 34455666665568887777655533 3333334432 222 23556678889999999998
Q ss_pred EE-EeecCceee-eeEEEEcCCeEEe-----------CCCCCHHHH-HHHhhhcCcce
Q psy3570 77 FR-QTVSSNVLV-GSYCALTNQGGLV-----------HPHTSPQDQ-DELSSLLQIPL 120 (184)
Q Consensus 77 i~-~tIags~lV-Gsl~v~Nn~G~LV-----------~p~~~d~El-~~l~~~l~V~v 120 (184)
++ ..+ .+= |++ ..|..|-++ .|..+.+|+ +.|++.||++-
T Consensus 149 ~~~~~~---vlEGGsi-~~DG~GTlltTe~clLn~nRNP~lsk~eiE~~Lk~~LGv~k 202 (389)
T 2jer_A 149 YRTDDF---VLEGGSF-HVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEK 202 (389)
T ss_dssp EEEEEE---ECCGGGE-EECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSE
T ss_pred EecCCe---EEccCcE-EECCCceEEEEeeeecCCCCCCCcCHHHHHHHHHHHcCCCE
Confidence 77 332 111 333 335555555 567799999 68999999984
No 39
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=20.59 E-value=2.3e+02 Score=19.88 Aligned_cols=89 Identities=12% Similarity=0.204 Sum_probs=52.9
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCcee----
Q psy3570 11 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVL---- 86 (184)
Q Consensus 11 vp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~l---- 86 (184)
+|..+++++|+.+-+..+.=..+..+..+.+.. .--||+|...-.++..+.++. + ..+.|..+
T Consensus 11 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~------~~g~afV~f~~~~~a~~A~~~--~-----~~~~g~~i~v~~ 77 (167)
T 2cjk_A 11 LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR------SRGFGFLSFEKPSSVDEVVKT--Q-----HILDGKVIDPKR 77 (167)
T ss_dssp CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS------CCSCEEEEESSTHHHHHHHHS--C-----CEETTEECCCEE
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC------ccceEEEEEccHHHHHHHHhc--c-----cccCCeEccccc
Confidence 688999999998876543113333333322210 223788888877888788875 1 11222221
Q ss_pred ---------eeeEEEEcCCeEEeCCCCCHHHHHHHhhhcC
Q psy3570 87 ---------VGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117 (184)
Q Consensus 87 ---------VGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~ 117 (184)
-..+.++| +|+.+++++++.+-.-+|
T Consensus 78 ~~~~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G 112 (167)
T 2cjk_A 78 AIPRDEQDKTGKIFVGG-----IGPDVRPKEFEEFFSQWG 112 (167)
T ss_dssp CCCHHHHHHCEEEEEEE-----ECTTCCHHHHHHHHHTTS
T ss_pred ccchhhccCCCeEEECC-----CCCCCCHHHHHHHHHhCc
Confidence 12344444 689999999987766555
No 40
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=20.30 E-value=1.4e+02 Score=26.23 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=40.2
Q ss_pred CCCChhHHHHHhhhcCceEEE-EeecCceee-eeEEEEcCCeEEe-----------CCCCCHHHH-HHHhhhcCcce
Q psy3570 58 PDLDRETEEILADTLNVEVFR-QTVSSNVLV-GSYCALTNQGGLV-----------HPHTSPQDQ-DELSSLLQIPL 120 (184)
Q Consensus 58 p~~~~~~~~~I~e~LgVevi~-~tIags~lV-Gsl~v~Nn~G~LV-----------~p~~~d~El-~~l~~~l~V~v 120 (184)
.+.++...+.+.+.+|+++++ ..+ .+= |++ ..|..|-|+ .|..+.+|+ +.|++.||++-
T Consensus 134 ~~~D~~v~~~~~~~~g~~~~~~~~~---vlEGGsi-~~dG~GTlltTe~clLn~nRNp~lsk~eie~~Lk~~LG~~k 206 (377)
T 2ewo_A 134 WDQDALVARKVCEIEGVDSYKTKDF---VLEGGSI-HVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVK 206 (377)
T ss_dssp CTTHHHHHHHHHHTTTCCEEEEEEE---ECCGGGE-EEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSE
T ss_pred ccchhHHHHHHHHHcCCCeEecCCe---EEcCCce-EECCCceEEEEcccccCCCCCCccCHHHHHHHHHHHcCCCE
Confidence 345567788899999999877 332 111 333 335555554 566799999 68999999983
No 41
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Probab=20.07 E-value=67 Score=28.05 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=39.0
Q ss_pred CChhHHHHHhhhcCceEEEEeecCceee-eeEEEEcCCeEEe-----------CCCCCHHHH-HHHhhhcCcc
Q psy3570 60 LDRETEEILADTLNVEVFRQTVSSNVLV-GSYCALTNQGGLV-----------HPHTSPQDQ-DELSSLLQIP 119 (184)
Q Consensus 60 ~~~~~~~~I~e~LgVevi~~tIags~lV-Gsl~v~Nn~G~LV-----------~p~~~d~El-~~l~~~l~V~ 119 (184)
.+....+.+.+.+|+++.+..+ .+= |++ ..|..|-++ .|..+.+|+ +.|++.||++
T Consensus 132 ~D~~v~~~~~~~~g~~~~~~~~---vlEGG~i-~~dG~GTlltT~~clLn~nRNp~ls~~~ie~~L~~~LG~~ 200 (355)
T 1xkn_A 132 DDNAVPERVAKAQGLPMVSTGM---VLEGGAI-DVNGAGLLLTTTACLLNPNRNPSLGKAEIEAQLRRYLGIE 200 (355)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEE---ECCGGGE-EECSSSEEEEEHHHHTCTTTCTTCCHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHcCCCeecCCe---EEccCcE-EECCCceEEEEeeeecCCCCCCCCCHHHHHHHHHHHcCCc
Confidence 3356678888999999877532 111 333 336666555 677799999 6899999997
Done!