RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3570
(184 letters)
>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like
protein; Provisional.
Length = 247
Score = 330 bits (848), Expect = e-116
Identities = 136/186 (73%), Positives = 157/186 (84%), Gaps = 2/186 (1%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++VGNR GL+VP+ TD ELQH+RNSLPDSVK+QRVEERLSALGN IACNDYVAL+HPDL
Sbjct: 62 LTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDL 121
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
DRETEEI+ D L VEVFR T++ NVLVG+YC TNQGGLVHP TS Q+ DELSSLLQ+PL
Sbjct: 122 DRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVPL 181
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQ--PSAITTSMRAS 178
VAGTVNRGS+VIGAG+VVNDWAAFCG DTT+TEISVIE +FKL A +R+S
Sbjct: 182 VAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRSS 241
Query: 179 LIDSIA 184
LID++A
Sbjct: 242 LIDTLA 247
>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large
ribosomal subunit and prevents the two subunits from
associating during translation initiation. IF6 comprises
a family of translation factors that includes both
eukaryotic (eIF6) and archeal (aIF6) members. All
members of this family have a conserved pentameric fold
referred to as a beta/alpha propeller. The eukaryotic
IF6 members have a moderately conserved C-terminal
extension which is not required for ribosomal binding,
and may have an alternative function.
Length = 220
Score = 265 bits (679), Expect = 2e-91
Identities = 95/162 (58%), Positives = 119/162 (73%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++VGN +GL++P+ TTD ELQHIRNSLPD V + RV+E LSALGNVI CND+ ALVHPDL
Sbjct: 59 LTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDL 118
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
+E EEI+ D L VEVFR T++ VGS LTN+GGLVHP TS ++ +ELS L ++P+
Sbjct: 119 SKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPV 178
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK 162
VAGTVN GS+ +GAG+V N A G DTT E+S IE
Sbjct: 179 VAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220
Score = 39.2 bits (92), Expect = 4e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 43 LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
+G + LV P D + L V V R T+ + LVGS N GL+ P
Sbjct: 12 IGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTV-GNSNGLLLP 70
Query: 103 HT 104
HT
Sbjct: 71 HT 72
Score = 34.6 bits (80), Expect = 0.014
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 76 VFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAG 135
R + + +G + TN LV P + L +P+V T+ GS ++G+
Sbjct: 1 AIRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIG-GSRLVGSL 59
Query: 136 MVVNDWAAFCGFDTTSTEISVI 157
V N TT E+ I
Sbjct: 60 TVGNSNGLLLPHTTTDQELQHI 81
>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6.
Length = 200
Score = 239 bits (613), Expect = 2e-81
Identities = 96/143 (67%), Positives = 119/143 (83%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++VGN +GL+VPN TTD ELQH+RNSLPDSV++QRVEERL+ALGN+I CND+ AL PDL
Sbjct: 58 LTVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDL 117
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
+ETEEI++D L VEVFR T++ N+ VGSYC +TN+GGLVHP TS ++ ELS LL +PL
Sbjct: 118 SKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPL 177
Query: 121 VAGTVNRGSEVIGAGMVVNDWAA 143
VAGTVN GSEV+GAG+V ND A
Sbjct: 178 VAGTVNFGSEVVGAGLVANDNGA 200
Score = 41.5 bits (98), Expect = 7e-05
Identities = 25/118 (21%), Positives = 44/118 (37%)
Query: 43 LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
+G I + LV D ++ + L V V ++ + L+G + G LV
Sbjct: 11 IGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPN 70
Query: 103 HTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160
T+ Q+ L + L + V +G ++ ND A D + +I V
Sbjct: 71 TTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDV 128
Score = 30.3 bits (69), Expect = 0.37
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMV 137
R + + +G Y LTN LV + +L +P+V ++ GS +IG V
Sbjct: 2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIG-GSRLIGRLTV 60
Query: 138 VNDWAAFCGFDTTSTEISVIESVFK 162
N TT E+ + +
Sbjct: 61 GNSNGLLVPNTTTDQELQHLRNSLP 85
>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family. This family includes eukaryotic
translation initiation factor 6 as well as presumed
archaebacterial homologues.
Length = 197
Score = 227 bits (582), Expect = 7e-77
Identities = 82/143 (57%), Positives = 107/143 (74%), Gaps = 2/143 (1%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++VGN +GL+VP+ TD EL H++ SL V ++R+EE+L+ALGNVI ND ALVHPDL
Sbjct: 57 LTVGNSNGLLVPSTATDEELDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDL 114
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
RETEEI+AD L VEVFR T++ N VGS TN+GGLVHP + ++ +ELS LL +P+
Sbjct: 115 SRETEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPV 174
Query: 121 VAGTVNRGSEVIGAGMVVNDWAA 143
AGTVNRGS ++GAG+V ND A
Sbjct: 175 DAGTVNRGSPLVGAGLVANDKGA 197
Score = 52.1 bits (126), Expect = 1e-08
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 43 LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
+G + ALV P L E ++ + L VEV +++ + LVGS + G LV
Sbjct: 10 IGVFARATNDYALVPPGLSEEFYSVIEEELGVEVVETSIAGSRLVGSLTVGNSNGLLVPS 69
Query: 103 HTSPQDQDELSSLLQIPLV 121
+ ++ D L L + +
Sbjct: 70 TATDEELDHLKESLDVNVE 88
Score = 31.3 bits (72), Expect = 0.20
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMV 137
R ++ + +G + TN LV P S + + L + +V ++ GS ++G+ V
Sbjct: 1 RLSIEGSPNIGVFARATNDYALVPPGLSEEFYSVIEEELGVEVVETSIA-GSRLVGSLTV 59
Query: 138 VNDWAAFCGFDTTSTEISVIESVFKLN 164
N T E+ ++ +N
Sbjct: 60 GNSNGLLVPSTATDEELDHLKESLDVN 86
>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6)
[Translation, ribosomal structure and biogenesis].
Length = 222
Score = 218 bits (558), Expect = 6e-73
Identities = 73/163 (44%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++ GN +GL+VP D EL+ ++N V++ + +L+ALGN+I ND ALVHPDL
Sbjct: 61 LTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDL 118
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
E E+ + D L VEV R T++ VGS LTN+GGLVHP TS ++ +ELS L +P+
Sbjct: 119 SDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPV 178
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
GTVN GS +GAG+V N A G DTT E++ IE
Sbjct: 179 DVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221
Score = 46.5 bits (111), Expect = 1e-06
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQG 97
E +G + ALV P LD + +++ + L V V T++ + LVG+ A + G
Sbjct: 9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNG 68
Query: 98 GLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVI 157
LV ++ L + + + + +G ++ ND A D + I
Sbjct: 69 LLVPYGVRDEELRRLKNA--LGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEI 126
Query: 158 ESV 160
E V
Sbjct: 127 EDV 129
Score = 36.9 bits (86), Expect = 0.003
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMV 137
R + + +G Y T LV P + D + +L +P+V T+ GS ++GA
Sbjct: 5 RLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIA-GSRLVGALTA 63
Query: 138 VNDWAAFCGFDTTSTEISVIES 159
N + E+ +++
Sbjct: 64 GNSNGLLVPYGVRDEELRRLKN 85
>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative.
This model finds translation initiation factor eIF-6 of
eukaryotes, which is a ribosome dissociation factor. It
also finds a set of apparent archaeal orthologs,
slightly shorter proteins not yet shown to act as
initiation factors; these probably should be designated
as translation initiation factor aIF-6, putative
[Protein synthesis, Translation factors].
Length = 216
Score = 190 bits (485), Expect = 6e-62
Identities = 95/164 (57%), Positives = 120/164 (73%), Gaps = 5/164 (3%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDS-VKLQRVEERLSALGNVIACNDYVALVHPD 59
++VGN GL+V D L H +SLPDS VK+QR+EERL+ALGN+I CNDY AL P+
Sbjct: 57 LTVGNSRGLLVS----DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPE 112
Query: 60 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 119
LDR+TEE+++D L VEVFR T++ + VGSY +TN+GGLVHP TS Q+Q+ELSSLL +
Sbjct: 113 LDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVE 172
Query: 120 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
LVAGTVNRG+ V+GA MV N A G DTT E+S+IE L
Sbjct: 173 LVAGTVNRGTTVVGACMVANSKGAVVGLDTTGPELSIIEEALGL 216
Score = 33.2 bits (76), Expect = 0.049
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMV 137
R S N +G Y +T + LV + S L++P++ T+ GS ++GA V
Sbjct: 1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELEVPVLHTTIA-GSSLVGALTV 59
Query: 138 VN 139
N
Sbjct: 60 GN 61
>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6;
Provisional.
Length = 222
Score = 158 bits (401), Expect = 4e-49
Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
++ GN +G++VP+ D EL+ ++ +L + ++ + +L+ALGN+I ND ALVHP+L
Sbjct: 60 LAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPEL 117
Query: 61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
E +++ DTL VEV R T++ VGS +TN+GGLVHP + ++ L L ++ +
Sbjct: 118 SDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVEV 177
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 165
GTVN GS ++G+G+V N A G DTT E+ IE E
Sbjct: 178 DIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222
Score = 59.8 bits (146), Expect = 2e-11
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 47 IACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSP 106
D ALV PDLD +T E + +TL VEV T++ + LVGS A + G LV
Sbjct: 17 ARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLD 76
Query: 107 QDQDELSSLLQIP--LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK 162
++ + L L + ++ + +I + ND A + + VIE
Sbjct: 77 EELELLKEALDLNVEVLPSKLTALGNLI----LANDKGALVHPELSDEARKVIEDTLG 130
Score = 32.9 bits (76), Expect = 0.062
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMV 137
R ++ + +G Y T+ LV P + +++ L + +V T+ GS ++G+
Sbjct: 4 RLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIA-GSSLVGSLAA 62
Query: 138 VNDWAAFCGFDTTSTEISVIESVFKLN 164
N E+ +++ LN
Sbjct: 63 GNSNGILVPSIVLDEELELLKEALDLN 89
>gnl|CDD|216255 pfam01031, Dynamin_M, Dynamin central region. This region lies
between the GTPase domain, see pfam00350, and the
pleckstrin homology (PH) domain, see pfam00169.
Length = 296
Score = 33.3 bits (77), Expect = 0.048
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 20 LQHIRNSLPD-----SVKLQRVEERLSALGNVIACND 51
+ HIR SLPD + KLQ E+ L G+ +
Sbjct: 71 VNHIRKSLPDLKSQINKKLQETEKELERYGDDPPEDP 107
>gnl|CDD|237859 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional.
Length = 1000
Score = 31.5 bits (72), Expect = 0.28
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 32 KLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTL 72
L +++ + I +Y+ LV P+ R+ ILA+ L
Sbjct: 412 HLSALDQDGAIEIREINGVEYLFLVRPEPGRDAAAILANEL 452
>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T;
Provisional.
Length = 370
Score = 28.0 bits (63), Expect = 2.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 GNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEER-LSAL 43
G+ L+V A D ++ H+R L D ++ +++R L AL
Sbjct: 112 GDHLFLVVNAACKDADIAHLREHLSDECEVNPLDDRALLAL 152
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 27.9 bits (63), Expect = 3.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 118 IPLVAGTVNRGSEVIGAGMV 137
P+VAG + + +GAG+V
Sbjct: 230 TPVVAGGADAAAAALGAGVV 249
>gnl|CDD|236024 PRK07475, PRK07475, hypothetical protein; Provisional.
Length = 245
Score = 27.6 bits (62), Expect = 3.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 112 LSSLLQIPLVAGTVNRGSEV 131
SSLLQ+PL+ + G +V
Sbjct: 106 TSSLLQVPLIQALLPAGQKV 125
>gnl|CDD|151225 pfam10746, Phage_holin_6, Phage holin family 6. Holins are a
diverse family of proteins that cause bacterial membrane
lysis during late-protein synthesis.
Length = 66
Score = 25.6 bits (56), Expect = 5.2
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 119 PLVAGTVNRGSEVIGAGMVVNDW--AAFCGFDTTSTEISVIESVFK 162
P+V V G+ + G+ +N+W AA + + V++++
Sbjct: 14 PIVGTAVADGASRLFFGLTLNEWFYAAAIAYTVVQIGVLVVKTIID 59
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 27.3 bits (61), Expect = 5.6
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 32 KLQRVEERLSALG--NVIACNDY--VALVHPD-------LDRETEEILA-----DTLNVE 75
+LQRVEE + AL N++A +Y V + L+ E + IL + E
Sbjct: 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Query: 76 VFRQT 80
VF +
Sbjct: 1019 VFMEA 1023
>gnl|CDD|232817 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide
synthase. Alternate name: SAICAR synthetase purine de
novo biosynthesis. E.coli example noted as homotrimer.
Check length. Longer versions may be multifunctional
enzymes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 237
Score = 27.0 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 56 VHPD----LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTN 95
V PD D+ET E+ A L+ ++FR+T+ L+ +Y +
Sbjct: 196 VSPDTCRLWDKETYEVGAPKLDKDIFRRTLGK--LIEAYETVAR 237
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 26.3 bits (59), Expect = 9.9
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 1 MSV--GNRHGLIVPNATTDTELQHIRN-------SLPDSVKLQRVEERLSALGNVIACND 51
M++ G + G+ P+ T L+ S D+ + E LS L +A
Sbjct: 215 MAIEAGAKAGIFAPDEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPH 274
Query: 52 YVALVHP 58
V P
Sbjct: 275 LPDNVKP 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.365
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,967,671
Number of extensions: 809872
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 33
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)