RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3570
         (184 letters)



>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein;
           ribosome, eukaryotic initiation factor 6, EIF6, transla
           large ribosomal subunit, rRNA; 3.52A {Tetrahymena
           thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
          Length = 248

 Score =  241 bits (615), Expect = 2e-81
 Identities = 116/183 (63%), Positives = 154/183 (84%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++ GN++GL+VPN   D EL++IRNSLPD+V+++R+EE+LSALGN +  NDYVAL+HPDL
Sbjct: 65  VTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDL 124

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRE+EEI+ADTL VEVFR T+++NVLVG+YC + N+GGLVHP  S ++ DEL++LLQIPL
Sbjct: 125 DRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPL 184

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
            AGT+NRGS+VIGAG+VVNDWAAFCG DTTSTEISV+E++FKLNE +   +   MR   +
Sbjct: 185 CAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDFV 244

Query: 181 DSI 183
            ++
Sbjct: 245 MNL 247



 Score = 55.4 bits (133), Expect = 6e-10
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 2/124 (1%)

Query: 41  SALGNVIACNDYVALVHPDLDRETEEILADTL--NVEVFRQTVSSNVLVGSYCALTNQGG 98
           + +G          LV          +    L  ++ V   ++    +VG        G 
Sbjct: 14  NDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGL 73

Query: 99  LVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIE 158
           LV    +  +   + + L   +    +      +G  +V ND+ A    D       +I 
Sbjct: 74  LVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIA 133

Query: 159 SVFK 162
               
Sbjct: 134 DTLG 137


>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro
           closure, subdomain, structural genomics, PSI; 2.50A
           {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
          Length = 224

 Score =  221 bits (564), Expect = 4e-74
 Identities = 126/163 (77%), Positives = 146/163 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           VAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224



 Score = 55.4 bits (133), Expect = 7e-10
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 2/126 (1%)

Query: 41  SALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGG 98
           + +G      +   LV               L   + +   T++   ++G   A   +G 
Sbjct: 11  NEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGL 70

Query: 99  LVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIE 158
           LV   T+ Q+   L + L   +    V      +G  +  ND+ A    D       +I 
Sbjct: 71  LVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELIS 130

Query: 159 SVFKLN 164
            V  + 
Sbjct: 131 DVLGVE 136


>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter
           thermautotrophicusorganism_taxid}
          Length = 222

 Score =  214 bits (545), Expect = 3e-71
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGN +G +V N   D E+  +  +  +     R+ ER +A+GN++  ND  A+  P L
Sbjct: 60  LAVGNSNGFVVSNQAMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPLL 116

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             +  +++ D L V+V   T++   +VGS  A TN+G L++P  S ++   +   L +  
Sbjct: 117 SDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEA 176

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEA 166
             GTVN G  +IGA  V N      G +TT  E++ IE      E 
Sbjct: 177 DVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222



 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 38  ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQG 97
                LG  I+  D VAL+  +   + E +L + L VEV + ++S + L G+     + G
Sbjct: 8   SGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALAVGNSNG 67

Query: 98  GLVHPHTSPQDQDEL-SSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISV 156
            +V      ++ D L ++ ++   +          +G  ++ ND  A      +   + V
Sbjct: 68  FVVSNQAMDREIDALAAAGVEAVRIPERFT----AVGNLVLANDNGAVASPLLSDDALQV 123

Query: 157 IESVFKLN 164
           I  V +++
Sbjct: 124 IGDVLEVD 131


>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro
           closure subdomain, structural genomics, PSI; 1.30A
           {Methanocaldococcus jannaschii} SCOP: d.126.1.1
          Length = 228

 Score =  209 bits (533), Expect = 2e-69
 Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 5/167 (2%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPD---SVKLQRVEERLSALGNVIACNDYVALVH 57
           +SV N++GL++P    D EL  I+N L +    + ++ ++ + +ALGN+I  ND  AL+ 
Sbjct: 62  LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALIS 121

Query: 58  PDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117
           P+L    ++I  D+LNVEV   T++    VGS   +TN+G L HP     + + L SL +
Sbjct: 122 PELKDFKKDI-EDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK 180

Query: 118 IPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           +  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 181 VEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227



 Score = 59.2 bits (143), Expect = 3e-11
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 41  SALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLV 100
             +G +    + + L+   LD++    +++ L  +  +  +  + LVGS       G L+
Sbjct: 13  PTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLL 72

Query: 101 HPHTSPQDQDELSSLLQIPLVAGTVNRGSE---VIGAGMVVNDWAAFCGFDTTSTEISVI 157
                 ++ D + + L+   +   V         +G  ++ ND  A    +    +   I
Sbjct: 73  PKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFK-KDI 131

Query: 158 ESVFKLN 164
           E    + 
Sbjct: 132 EDSLNVE 138


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 51.2 bits (122), Expect = 5e-08
 Identities = 46/262 (17%), Positives = 82/262 (31%), Gaps = 93/262 (35%)

Query: 7   HGLIV----PNATTDTELQH-IRN-------------SLPDSVKLQRVEE---RLSAL-- 43
           H L       N TT  + +  I+N                +S   + V E   +L A+  
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161

Query: 44  --GNVIAC--------NDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCAL 93
             GN              Y  LV   +        A+TL+ E+ R T+ +  +      +
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKF-----SAETLS-ELIRTTLDAEKVFTQGLNI 215

Query: 94  TNQGGLVHPHTSPQDQDELSS---------LLQI------------------PLVAGTVN 126
                L +P  +P D+D L S         ++Q+                    + G   
Sbjct: 216 --LEWLENPSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272

Query: 127 RGSEVIGAGMV--VNDWAAF-------------CG------FDTTSTEISVIESVFKLNE 165
               ++ A  +   + W +F              G      +  TS   S++E   + NE
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332

Query: 166 AQPS---AITTSMRASLIDSIA 184
             PS   +I+   +  + D + 
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVN 354



 Score = 33.1 bits (75), Expect = 0.051
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 31/107 (28%)

Query: 51  DYVALVHPDLDRETEEILADTLNVEVFR-------QTVSSNV---LVGSYCALTNQGGLV 100
               L++ DL +      A  + + V+        + +S ++   +V   C +      V
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV--DCIIRLP---V 488

Query: 101 H----PHTS--------PQDQDELSSLLQIPLVAGTVNRGSEVIGAG 135
                            P     L  L       GT   G  VI AG
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHR-NKDGT---GVRVIVAG 531



 Score = 31.2 bits (70), Expect = 0.19
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 48/181 (26%)

Query: 20   LQHIRNSLPDSV-------KLQRVEERLSALG--NVIACNDYVALVHPDLDRET------ 64
            +  I  + P ++       K +R+ E  SA+    ++        +  +++  +      
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720

Query: 65   --EEILADTLN-------VEV--FRQ------TVSSNVLVG-S---YCALTNQGGLVHPH 103
              + +L+ T         +E   F          +     G S   Y AL +   ++   
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM--- 1777

Query: 104  TSPQDQDELSSLLQI--PLVAGTVNRGSEVIGA-GMV-VNDWAAFCGFDTTSTEISVIES 159
             S +    L  ++      +   V R        GM+ +N       F   + +  V+E 
Sbjct: 1778 -SIES---LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ-YVVER 1832

Query: 160  V 160
            V
Sbjct: 1833 V 1833



 Score = 28.1 bits (62), Expect = 2.4
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 4    GNRHGL-IVPNATTDTELQHIRNS-LPDSVKLQRVEERL 40
            G+   L  V N     +LQ I    L  S+ L+ VE  L
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895



 Score = 27.7 bits (61), Expect = 2.9
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 45/120 (37%)

Query: 40   LSALGNVIACNDYVALVH----------P--DLDRETEEILA-------DTLNVEVFRQT 80
            L++L +V++    V +V           P  +L R    ++A        + + E  +  
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829

Query: 81   VSSNVLVGSYCALTNQGGLVHP--HTSPQDQ----------DELSSLL------QIPLVA 122
            V               G LV    +     Q          D ++++L      +I ++ 
Sbjct: 1830 VE--------RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 20/128 (15%), Positives = 53/128 (41%), Gaps = 21/128 (16%)

Query: 6   RHGLIVPNATTDTELQHIRNS-LPDSVKLQ-R--VEERLSALGNVIACNDY--VALVHPD 59
            + L+V        L +++N+   ++  L  +  +  R   + + ++      ++L H  
Sbjct: 244 ENCLLV--------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 60  L---DRETEEILADTLNVEVF---RQTVSSNVLVGSYCALTNQGGLVHPHTSPQ-DQDEL 112
           +     E + +L   L+       R+ +++N    S  A + + GL         + D+L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 113 SSLLQIPL 120
           +++++  L
Sbjct: 356 TTIIESSL 363



 Score = 32.9 bits (74), Expect = 0.054
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 15/94 (15%)

Query: 21  QHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT 80
           Q IR+   DS         L+ L  +     Y+    P  +R    IL        F   
Sbjct: 505 QKIRH---DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-------FLPK 554

Query: 81  VSSNVLVGSYC-----ALTNQGGLVHPHTSPQDQ 109
           +  N++   Y      AL  +   +      Q Q
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588



 Score = 32.5 bits (73), Expect = 0.067
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 18/146 (12%)

Query: 13  NATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTL 72
           +  +  E+ HI  S        R+   L +             V  ++ R   + L   +
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE----EMVQKFVE-EVLRINYKFLMSPI 98

Query: 73  NVEVFRQTVSSNVLVGSYC-ALTNQGGLVHPH--TSPQDQDEL-SSLLQIPLVAGTVNRG 128
             E  RQ      +       L N   +   +  +  Q   +L  +LL++      +  G
Sbjct: 99  KTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 129 SEVIGAG------MVVNDWAAFCGFD 148
             V+G+G       V   +   C  D
Sbjct: 158 --VLGSGKTWVALDVCLSYKVQCKMD 181


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.8 bits (71), Expect = 0.058
 Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 153 EISVIESVFKL--NEAQPS-AITTSM 175
            +  +++  KL  +++ P+ AI  +M
Sbjct: 21  ALKKLQASLKLYADDSAPALAIKATM 46


>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
           nucleotide-binding, endocytosis, motor protein; HET:
           GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
          Length = 353

 Score = 28.7 bits (64), Expect = 1.1
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 20  LQHIRNSLPD-----SVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNV 74
             HIR++LP        +L  +E+ +    N                  T+  + + L  
Sbjct: 286 TNHIRDTLPGLRNKLQSQLLSIEKEVEEYKN-----------FRPDKHGTDSRVDEML-- 332

Query: 75  EVFRQTVSSNVLVGSY 90
            ++     +  ++G+ 
Sbjct: 333 RMYHALKEALSIIGNI 348


>1yx2_A Aminomethyltransferase; glycine cleavage system T protein,
           alpha-beta, beta-barrel, structural genomics, PSI,
           protein structure initiative; 2.08A {Bacillus subtilis}
          Length = 365

 Score = 27.8 bits (63), Expect = 2.2
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 3   VGNRHGLIVPNA-TTDTELQHIRNSLPDSVKLQRVEERLSAL 43
            G    L+V NA   D +L  ++      V++    ++++ L
Sbjct: 106 KGENRYLLVINASNIDKDLAWMKEHAAGDVQIDNQSDQIALL 147


>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
           protein 1A, GTPase, membrane fission, motor Pro; HET:
           GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
          Length = 360

 Score = 27.1 bits (60), Expect = 3.3
 Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 5/31 (16%)

Query: 20  LQHIRNSLPD-----SVKLQRVEERLSALGN 45
            + I++ +P      +  +  +E  LS LG 
Sbjct: 292 ERVIKSRIPGIQSLINKTVLELETELSRLGK 322


>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
           antiviral GTPase, membrane associated, PR binding; 3.50A
           {Homo sapiens} PDB: 3zys_B
          Length = 608

 Score = 27.0 bits (59), Expect = 4.0
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 5/31 (16%)

Query: 20  LQHIRNSLPD-----SVKLQRVEERLSALGN 45
           + HI  SLP          QR+ E L   G 
Sbjct: 307 ITHICKSLPLLENQIKETHQRITEELQKYGV 337


>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
           homology domain, karyog mitosis, microtubules; HET: ADP
           EBC; 2.30A {Saccharomyces cerevisiae}
          Length = 403

 Score = 26.8 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 5/20 (25%)

Query: 40  LSALGNVIACNDYVALVHPD 59
           LSALG+VI      AL  PD
Sbjct: 327 LSALGDVIH-----ALGQPD 341


>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
           microtubinding proteinbule, contractIle protein; HET:
           ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
           PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
          Length = 347

 Score = 26.4 bits (59), Expect = 5.9
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 5/20 (25%)

Query: 40  LSALGNVIACNDYVALVHPD 59
           LS LG+VI      AL  PD
Sbjct: 271 LSCLGDVIH-----ALGQPD 285


>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
           1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
           1us8_A*
          Length = 149

 Score = 25.4 bits (56), Expect = 9.8
 Identities = 1/23 (4%), Positives = 6/23 (26%)

Query: 59  DLDRETEEILADTLNVEVFRQTV 81
              +     +   +   +F   +
Sbjct: 114 PSSKAISAFMEKLIPYNIFLNAI 136


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,622,247
Number of extensions: 147523
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 49
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)