RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3570
         (184 letters)



>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 224

 Score =  238 bits (609), Expect = 3e-81
 Identities = 126/163 (77%), Positives = 146/163 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           VAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224



 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 43  LGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLV 100
           +G      +   LV               L   + +   T++   ++G   A   +G LV
Sbjct: 13  IGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLV 72

Query: 101 HPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160
              T+ Q+   L + L   +    V      +G  +  ND+ A    D       +I  V
Sbjct: 73  PTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDV 132

Query: 161 FK 162
             
Sbjct: 133 LG 134


>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 225

 Score =  228 bits (584), Expect = 2e-77
 Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 5/167 (2%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDS---VKLQRVEERLSALGNVIACNDYVALVH 57
           +SV N++GL++P    D EL  I+N L ++   + ++ ++ + +ALGN+I  ND  AL+ 
Sbjct: 60  LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALIS 119

Query: 58  PDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117
           P+L ++ ++ + D+LNVEV   T++    VGS   +TN+G L HP     + + L SL +
Sbjct: 120 PEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK 178

Query: 118 IPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           +  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 179 VEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 225



 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 43  LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
           +G +    + + L+   LD++    +++ L  +  +  +  + LVGS       G L+  
Sbjct: 13  IGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPK 72

Query: 103 HTSPQDQDELSSLLQ---IPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIES 159
               ++ D + + L+   + L    +   +  +G  ++ ND  A    +        IE 
Sbjct: 73  IVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPE-LKDFKKDIED 131

Query: 160 VFKLN 164
              + 
Sbjct: 132 SLNVE 136


>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 429

 Score = 27.0 bits (59), Expect = 1.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 96  QGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSE-VIGAGMVVNDWAAF 144
           QGG    HT    + +  +L  +P  +G +N  +  VIG G+VV+    F
Sbjct: 38  QGGANAGHTIYNSEGKKFALHLVP--SGILNEDTTCVIGNGVVVHLPGLF 85


>d2i32a1 b.1.22.1 (A:1-154) Anti-silencing protein 1, ASF1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 154

 Score = 24.3 bits (53), Expect = 8.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 6   RHGLIVPNATTDTELQHIRNSLPDSVKLQR 35
           R G  V N  T+TEL+      PD  KLQR
Sbjct: 108 RVGYYVNNEYTETELRENPPVKPDFSKLQR 137


>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 125

 Score = 23.6 bits (51), Expect = 9.8
 Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)

Query: 141 WAAFCGFDTTSTEISVIESVFK-LNEAQPSAIT 172
           WA   G      EI  I   F      Q + + 
Sbjct: 29  WATSGGLSLQPNEIGEIVQGFDNPAGLQSNGLH 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 609,115
Number of extensions: 24731
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 8
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)