Query psy3572
Match_columns 245
No_of_seqs 164 out of 459
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 20:05:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00136 eukaryotic translatio 100.0 5.1E-84 1.1E-88 577.8 32.0 245 1-245 1-247 (247)
2 COG1976 TIF6 Translation initi 100.0 1.1E-78 2.5E-83 530.1 25.5 220 1-224 2-221 (222)
3 KOG3185|consensus 100.0 2.4E-77 5.3E-82 516.1 22.9 245 1-245 1-245 (245)
4 PF01912 eIF-6: eIF-6 family; 100.0 1E-73 2.3E-78 497.8 13.6 199 3-204 1-199 (199)
5 PRK04046 translation initiatio 100.0 5.8E-65 1.3E-69 450.0 29.4 222 1-226 1-222 (222)
6 cd00527 IF6 Ribosome anti-asso 100.0 7E-65 1.5E-69 449.1 29.2 219 3-223 2-220 (220)
7 TIGR00323 eIF-6 translation in 100.0 1E-62 2.2E-67 434.0 27.1 215 4-224 1-215 (215)
8 smart00654 eIF6 translation in 100.0 1.3E-60 2.9E-65 416.5 25.1 200 3-204 1-200 (200)
9 smart00654 eIF6 translation in 100.0 8E-46 1.7E-50 323.6 22.0 173 50-226 2-177 (200)
10 cd00527 IF6 Ribosome anti-asso 100.0 4.5E-45 9.7E-50 322.9 22.5 175 1-178 44-220 (220)
11 TIGR00323 eIF-6 translation in 100.0 1.3E-44 2.8E-49 319.0 22.4 172 1-179 42-215 (215)
12 PRK04046 translation initiatio 100.0 1.7E-43 3.8E-48 313.1 23.0 175 48-226 2-177 (222)
13 PTZ00136 eukaryotic translatio 100.0 3.3E-32 7.2E-37 244.1 16.5 127 8-181 99-226 (247)
14 PF01912 eIF-6: eIF-6 family; 100.0 4.2E-31 9E-36 230.6 9.7 127 99-226 6-176 (199)
15 COG1976 TIF6 Translation initi 100.0 2E-29 4.2E-34 220.9 15.6 127 99-226 9-178 (222)
16 KOG3185|consensus 99.8 1.3E-18 2.7E-23 151.5 10.5 128 99-226 8-137 (245)
17 PRK04323 hypothetical protein; 49.6 88 0.0019 24.6 6.7 67 104-174 10-78 (91)
18 TIGR03380 agmatine_aguA agmati 38.2 2.4E+02 0.0051 27.1 9.1 60 118-180 122-193 (357)
19 PRK14548 50S ribosomal protein 35.6 72 0.0016 24.5 4.2 51 115-187 4-56 (84)
20 cd05402 NT_PAP_TUTase Nucleoti 35.0 89 0.0019 23.9 4.8 69 3-71 20-105 (114)
21 COG2052 Uncharacterized protei 33.0 45 0.00097 25.8 2.7 58 104-164 10-68 (89)
22 PLN02591 tryptophan synthase 32.8 1.9E+02 0.0042 26.3 7.3 112 66-210 106-221 (250)
23 cd01974 Nitrogenase_MoFe_beta 30.5 1.8E+02 0.0038 28.2 7.0 64 159-243 230-293 (435)
24 PF09419 PGP_phosphatase: Mito 29.7 71 0.0015 27.5 3.7 35 105-141 79-113 (168)
25 PF02274 Amidinotransf: Amidin 28.9 3E+02 0.0065 24.4 7.8 172 37-209 36-242 (281)
26 PF02274 Amidinotransf: Amidin 28.7 3.3E+02 0.0072 24.1 8.1 109 72-182 137-258 (281)
27 TIGR01659 sex-lethal sex-letha 28.2 3.2E+02 0.0069 26.0 8.2 135 72-224 115-258 (346)
28 PF08922 DUF1905: Domain of un 25.7 1.6E+02 0.0035 21.9 4.6 68 20-94 11-78 (80)
29 COG2957 Peptidylarginine deimi 24.8 3.8E+02 0.0083 25.9 7.9 104 77-180 67-198 (346)
30 COG3836 HpcH 2,4-dihydroxyhept 24.5 1E+02 0.0023 28.5 4.0 172 8-185 14-210 (255)
31 KOG1511|consensus 24.1 80 0.0017 30.9 3.3 45 13-57 325-376 (397)
32 COG0159 TrpA Tryptophan syntha 23.6 5.1E+02 0.011 24.1 8.4 119 68-223 124-245 (265)
33 PLN02334 ribulose-phosphate 3- 23.4 5E+02 0.011 22.6 8.9 101 21-134 6-113 (229)
34 CHL00123 rps6 ribosomal protei 22.8 1.6E+02 0.0035 22.8 4.3 67 159-226 12-87 (97)
35 COG0309 HypE Hydrogenase matur 21.9 65 0.0014 31.0 2.2 65 15-88 50-114 (339)
36 PRK10558 alpha-dehydro-beta-de 21.4 54 0.0012 29.8 1.6 106 46-151 71-184 (256)
37 TIGR03239 GarL 2-dehydro-3-deo 21.3 94 0.002 28.1 3.1 106 46-151 64-177 (249)
38 PRK13111 trpA tryptophan synth 20.6 4.1E+02 0.009 24.1 7.1 112 67-212 118-233 (258)
No 1
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=5.1e-84 Score=577.76 Aligned_cols=245 Identities=73% Similarity=1.176 Sum_probs=240.8
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (247)
T PTZ00136 1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE 80 (247)
T ss_pred CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572 81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++|||+++|+++++|++|+|||++|||++||+||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus 81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~L 160 (247)
T PTZ00136 81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGL 160 (247)
T ss_pred HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC--CCCcchHHHHHH
Q psy3572 161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE--AQPSAITTSMRA 238 (245)
Q Consensus 161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~--~~~~~~~~~~~~ 238 (245)
|||+++++|+++|+++||||+.+||+|+|+++||||++|||||++|||+||++|+++||++||++. ..+..+..+||+
T Consensus 161 VhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (247)
T PTZ00136 161 VHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS 240 (247)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccCCchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 556668899999
Q ss_pred hhhhhhC
Q psy3572 239 SLIDSIA 245 (245)
Q Consensus 239 ~~~~~~~ 245 (245)
+|||++.
T Consensus 241 ~~~~~~~ 247 (247)
T PTZ00136 241 SLIDTLA 247 (247)
T ss_pred HHHHhhC
Confidence 9999974
No 2
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-78 Score=530.08 Aligned_cols=220 Identities=44% Similarity=0.697 Sum_probs=217.7
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+|+|+ +|+++|+|+||++||+|++|||||+|||+.++|+|
T Consensus 2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E 79 (222)
T COG1976 2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE 79 (222)
T ss_pred ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572 81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||+ +++++|.++++|+||+||.|+||||+||+||++++++.|.|+|+|||||+|++|||.++|||+++.||||+|
T Consensus 80 l~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~L 157 (222)
T COG1976 80 LRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGL 157 (222)
T ss_pred HHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcce
Confidence 999998 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572 161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224 (245)
Q Consensus 161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v 224 (245)
+||.++++|+|+|+++|+|++..||+|+|+++||+|++|||||++||.+||+|||.|||++|++
T Consensus 158 vhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~aLg~ 221 (222)
T COG1976 158 VHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221 (222)
T ss_pred eCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999984
No 3
>KOG3185|consensus
Probab=100.00 E-value=2.4e-77 Score=516.10 Aligned_cols=245 Identities=79% Similarity=1.242 Sum_probs=242.5
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|..|++|+||++||+|+++||.||+|..+.+++|++.||++|+|.+|+++|+|+|+++||+||+||+||+|||+++||+|
T Consensus 1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE 80 (245)
T KOG3185|consen 1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE 80 (245)
T ss_pred CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572 81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
|+|||++|||.+.++|+++|++|+||.|+|||++||+|||++++++++|+|+|+|||+|.+||+..+|||||+.+|+|+|
T Consensus 81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~l 160 (245)
T KOG3185|consen 81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGL 160 (245)
T ss_pred HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCCCCCcchHHHHHHhh
Q psy3572 161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240 (245)
Q Consensus 161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (245)
|||.++-|++++|+++|+||+..||+|+|+..+|+|+++|||-+++|.+||..|+..||.+|++.+.+|..+..+||++|
T Consensus 161 Vhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiFkL~~aqp~~i~~~~R~~l 240 (245)
T KOG3185|consen 161 VHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIFKLNEAQPSSISSELRDTL 240 (245)
T ss_pred ecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHHhhcccCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred hhhhC
Q psy3572 241 IDSIA 245 (245)
Q Consensus 241 ~~~~~ 245 (245)
||++.
T Consensus 241 id~~~ 245 (245)
T KOG3185|consen 241 IDSYV 245 (245)
T ss_pred HHhcC
Confidence 99974
No 4
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=1e-73 Score=497.75 Aligned_cols=199 Identities=47% Similarity=0.795 Sum_probs=173.2
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHH
Q psy3572 3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~ 82 (245)
+|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||||||++++|+|++
T Consensus 1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~ 78 (199)
T PF01912_consen 1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE 78 (199)
T ss_dssp -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence 69999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeC
Q psy3572 83 HIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+||+++| +++|+++++|+||+||+|+|||++|++||+++++++|.|+|+|||||++++|||.++|||++++||+|+|||
T Consensus 79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~Lvh 157 (199)
T PF01912_consen 79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVH 157 (199)
T ss_dssp HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-
T ss_pred HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEEC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceE
Q psy3572 163 PHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAA 204 (245)
Q Consensus 163 p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~ 204 (245)
|+++++|+++|+++|+||+..||||+|+++||+|++|||||+
T Consensus 158 P~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~ 199 (199)
T PF01912_consen 158 PDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA 199 (199)
T ss_dssp TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred CCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence 999999999999999999999999999999999999999997
No 5
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=5.8e-65 Score=450.03 Aligned_cols=222 Identities=36% Similarity=0.599 Sum_probs=218.8
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||+|+++||+|||+|++++++.++.|++.|+ |++++++|+||+++|+|++||+||+|+|+.++++|
T Consensus 1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e 78 (222)
T PRK04046 1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE 78 (222)
T ss_pred CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence 8999999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572 81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++|++.| +++|.+++.+++++||++++||++|++||+++++..+.|+|+|||+|++.+|++.++||+++++||+|+|
T Consensus 79 ~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~l 156 (222)
T PRK04046 79 LELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGL 156 (222)
T ss_pred HHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEE
Confidence 99999987 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3572 161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 226 (245)
Q Consensus 161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~ 226 (245)
|||+++++|+++|++.|+|++.+||+|+|+++||||++|||||++|||+||++|+++||++||+.+
T Consensus 157 v~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~l~~~~ 222 (222)
T PRK04046 157 VHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222 (222)
T ss_pred ECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999753
No 6
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=7e-65 Score=449.08 Aligned_cols=219 Identities=57% Similarity=0.908 Sum_probs=211.4
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHH
Q psy3572 3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~ 82 (245)
+|++|+|+|+||+|+++||+|||+|++.++++.+.|+|+|+ +++++|+|+||++||+|++||++|+|||+.++|+|++
T Consensus 2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~ 79 (220)
T cd00527 2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ 79 (220)
T ss_pred eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence 69999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeC
Q psy3572 83 HIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+||++|+.++.+.+...+.+++||++++||++||+||.++++.++.|+|+|+|+|++.+|++.+.+|+++++||+|+|+|
T Consensus 80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~Lvh 159 (220)
T cd00527 80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVH 159 (220)
T ss_pred HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEEC
Confidence 99999876566655555555999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhC
Q psy3572 163 PHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK 223 (245)
Q Consensus 163 p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~ 223 (245)
|+++++|++.|+++|||++.+||+|+|.++|||+++|||||++|||+||++|+++||++||
T Consensus 160 P~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie~~l~ 220 (220)
T cd00527 160 PKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220 (220)
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 7
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=1e-62 Score=434.00 Aligned_cols=215 Identities=56% Similarity=0.942 Sum_probs=211.4
Q ss_pred eeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHH
Q psy3572 4 RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQH 83 (245)
Q Consensus 4 r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~ 83 (245)
|++|+|||+||+|+++||+||++|++.++++.+.|+|+|+ +++++++|+||++||+|+++|++|+|||+..++++++.
T Consensus 1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~ 78 (215)
T TIGR00323 1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS 78 (215)
T ss_pred CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence 6899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCC
Q psy3572 84 IRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 163 (245)
Q Consensus 84 l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p 163 (245)
|++. ++|.+++++.+++||++++||++|++||.++++..+.|+|.|+++|++.+|++..++|+++++||+|+||||
T Consensus 79 l~e~----l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP 154 (215)
T TIGR00323 79 LPDS----LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHP 154 (215)
T ss_pred hHhh----cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECC
Confidence 9874 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572 164 HTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224 (245)
Q Consensus 164 ~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v 224 (245)
+++++|++.|+++|||++.+||+|+|.++|||+++|||||++|||+||++|+++||++||+
T Consensus 155 ~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~l~~ 215 (215)
T TIGR00323 155 QTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEALGL 215 (215)
T ss_pred CCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 8
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=1.3e-60 Score=416.51 Aligned_cols=200 Identities=65% Similarity=1.056 Sum_probs=197.7
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHH
Q psy3572 3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~ 82 (245)
.|++|+|||+||+|+++||+|||+|++.+++.++.|++.|+ +++++|+|++++++|+|++||+||+|+|+.++|+|++
T Consensus 1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~ 78 (200)
T smart00654 1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ 78 (200)
T ss_pred CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence 48999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeC
Q psy3572 83 HIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+|+++|+++++|.+++.+++|+||+++|||++||+||+++++.+|.|+|+||||++++||+|.++|||.+++||+|+|||
T Consensus 79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~ 158 (200)
T smart00654 79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVH 158 (200)
T ss_pred HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceE
Q psy3572 163 PHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAA 204 (245)
Q Consensus 163 p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~ 204 (245)
|+++++|+++|+++|++|+..||+|+|+++||+|++|||||+
T Consensus 159 ~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~ 200 (200)
T smart00654 159 PDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA 200 (200)
T ss_pred CCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence 999999999999999999999999999999999999999996
No 9
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=8e-46 Score=323.57 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=167.7
Q ss_pred EEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHH
Q psy3572 50 HASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEI 128 (245)
Q Consensus 50 ~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~ 128 (245)
+++|+||++||+|+++|++|+|||+.++++|+++|++.|+ ++|.++. .+++++||++++||++||+||.++++..+.
T Consensus 2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~ 79 (200)
T smart00654 2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQH 79 (200)
T ss_pred eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHH
Confidence 7899999999999999999999999999999999999885 7887876 999999999999999999999999999999
Q ss_pred HHhhhC--CceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEE
Q psy3572 129 LADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFC 206 (245)
Q Consensus 129 I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lv 206 (245)
|++.|+ ++|.+.+.. .+.+|+++++||+|+|+||+++++|+++|+++|+|++.+||+ +|.++|||+++|||||++|
T Consensus 80 i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv 157 (200)
T smart00654 80 LRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLV 157 (200)
T ss_pred HHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEE
Confidence 999997 999998887 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCC
Q psy3572 207 GFDTTSTEISVIESVFKLNE 226 (245)
Q Consensus 207 g~~tT~~Ei~~Ie~~l~v~~ 226 (245)
||+||++|+++||++||++.
T Consensus 158 ~~~tt~~El~~ie~~l~v~~ 177 (200)
T smart00654 158 HPDTSEEELKELSELLGVPL 177 (200)
T ss_pred CCCCCHHHHHHHHHHhCCCc
Confidence 99999999999999999986
No 10
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=4.5e-45 Score=322.93 Aligned_cols=175 Identities=19% Similarity=0.232 Sum_probs=167.9
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|+.|++|+||++||+|+++|++|+|+|+..+++..+.|++.|+.+|+++++++.+| ++|.|++||+||+|||+.++|+|
T Consensus 44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e 122 (220)
T cd00527 44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA 122 (220)
T ss_pred cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence 78999999999999999999999999999999999999999998899999999999 99999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe-cCceeeeeEEEEcCCe
Q psy3572 81 LQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV-SSNVLVGSYCALTNQG 158 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G 158 (245)
+++|++.|+. +|.+.+ .+++++||+++|||++||+||+++++..+.|+|+||||+.++|+ +|+++|||.+++||+|
T Consensus 123 ~~~i~~~L~v--~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG 200 (220)
T cd00527 123 EEIIEDVLGV--EVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKG 200 (220)
T ss_pred HHHHHHhcCC--cEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCE
Confidence 9999999864 555555 56999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeeCCCCCHHHHHHHhhhcC
Q psy3572 159 GLVHPHTSPQDQDELSSLLQ 178 (245)
Q Consensus 159 ~LV~p~~s~eEl~~l~~~l~ 178 (245)
+||||+++++|+++|+++|+
T Consensus 201 ~lvg~~tt~~El~~ie~~l~ 220 (220)
T cd00527 201 AVVGSDTTGPELSRIEDALG 220 (220)
T ss_pred EEECCCCCHHHHHHHHHHhC
Confidence 99999999999999999886
No 11
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=1.3e-44 Score=319.03 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=165.9
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||+|+++||+|||+|++.+++..+.|+|.|+ |++++|+| +++|.|++||+||+|+|+.++|+|
T Consensus 42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e 116 (215)
T TIGR00323 42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT 116 (215)
T ss_pred cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence 7899999999999999999999999999999999999999999 99999999 999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe-cCceeeeeEEEEcCCe
Q psy3572 81 LQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV-SSNVLVGSYCALTNQG 158 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G 158 (245)
+++|+++|+ ++|.+++ .+.+++|+++++||++||+||+++++.++.|+|+||||+.++|| +|.++|||.+++||+|
T Consensus 117 ~~~i~~~L~--v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G 194 (215)
T TIGR00323 117 EELISDVLG--VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKG 194 (215)
T ss_pred HHHHHHhcC--CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCE
Confidence 999999885 5777777 89999999999999999999999999999999999999999999 5999999999999999
Q ss_pred EeeCCCCCHHHHHHHhhhcCc
Q psy3572 159 GLVHPHTSPQDQDELSSLLQI 179 (245)
Q Consensus 159 ~LV~p~~s~eEl~~l~~~l~V 179 (245)
+||||+++++|+++|+++|+.
T Consensus 195 ~lv~~~tt~~El~~ie~~l~~ 215 (215)
T TIGR00323 195 AVVGLDTTGPELSIIEEALGL 215 (215)
T ss_pred EEECCCCCHHHHHHHHHHhCc
Confidence 999999999999999999873
No 12
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=1.7e-43 Score=313.09 Aligned_cols=175 Identities=23% Similarity=0.337 Sum_probs=169.5
Q ss_pred eEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceE-EEecccCCcceeEEEEeCceEEEcCCCChhHH
Q psy3572 48 VIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKL-QRVEERLSALGNVIACNDYVALVHPDLDRETE 126 (245)
Q Consensus 48 vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v-~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~ 126 (245)
+++++|+||+.||+|+++|++++|+|+.++++|+++||+.| ++++ +..-.+.+++|+|+++||+++++||.++++..
T Consensus 2 i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L--~v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~ 79 (222)
T PRK04046 2 IRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETL--GVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEEL 79 (222)
T ss_pred cEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhc--CceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHH
Confidence 68999999999999999999999999999999999999998 4666 55678999999999999999999999999999
Q ss_pred HHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEE
Q psy3572 127 EILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFC 206 (245)
Q Consensus 127 e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lv 206 (245)
+.|+|.|||+|+++++ +++++|+++++||+|+|+||.++++|++.|++.|||++.++|+ +|.+++||+++||||||+|
T Consensus 80 ~~l~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv 157 (222)
T PRK04046 80 ELLKEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLV 157 (222)
T ss_pred HHHHHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEE
Confidence 9999999999999999 9999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCC
Q psy3572 207 GFDTTSTEISVIESVFKLNE 226 (245)
Q Consensus 207 g~~tT~~Ei~~Ie~~l~v~~ 226 (245)
||++|++|+++||++||++.
T Consensus 158 ~p~~t~~ei~~i~~~l~v~~ 177 (222)
T PRK04046 158 HPDATDEELKFLEDLFKVEV 177 (222)
T ss_pred CCCCCHHHHHHHHHHhCCce
Confidence 99999999999999999985
No 13
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=244.07 Aligned_cols=127 Identities=16% Similarity=0.242 Sum_probs=123.9
Q ss_pred eCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhh
Q psy3572 8 ENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNS 87 (245)
Q Consensus 8 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~ 87 (245)
..-+.||+|+++||+|||+||++++++.+.|+++|+ ||+++++|+|+++||++|+|
T Consensus 99 ~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~---------------------- 154 (247)
T PTZ00136 99 ERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLG--VEVFRTTIAGNVLVGTYCVF---------------------- 154 (247)
T ss_pred CccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCCceEEEEEEE----------------------
Confidence 345899999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEec-CceeeeeEEEEcCCeEeeCCCCC
Q psy3572 88 LPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVS-SNVLVGSYCALTNQGGLVHPHTS 166 (245)
Q Consensus 88 l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~LV~p~~s 166 (245)
||++|||||+++++..+.|+|+||||++++||+ |+++|||.+++||+|+++||+++
T Consensus 155 -----------------------Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT 211 (247)
T PTZ00136 155 -----------------------TNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTT 211 (247)
T ss_pred -----------------------eCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHHHHhhhcCcce
Q psy3572 167 PQDQDELSSLLQIPL 181 (245)
Q Consensus 167 ~eEl~~l~~~l~V~v 181 (245)
++|+++|+++|+++.
T Consensus 212 ~~El~~Ie~~l~v~~ 226 (247)
T PTZ00136 212 ATEISVIERIFKLRR 226 (247)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999987
No 14
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=99.97 E-value=4.2e-31 Score=230.58 Aligned_cols=127 Identities=25% Similarity=0.419 Sum_probs=108.8
Q ss_pred ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe------------------
Q psy3572 99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL------------------ 160 (245)
Q Consensus 99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L------------------ 160 (245)
...+.+|+|+++||+|||+||+++++..+.|++.|+||+++++|+|+++||+|+++|+||+|
T Consensus 6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~ 85 (199)
T PF01912_consen 6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP 85 (199)
T ss_dssp TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence 47899999999999999999999999999999999999999999999999999999777777
Q ss_pred --------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHH
Q psy3572 161 --------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTE 214 (245)
Q Consensus 161 --------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~E 214 (245)
+||+.++++.+.|+++|+|++.++|+ +|.+.|||..++||+|++|||++|++|
T Consensus 86 ~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~ti-a~~~~VGs~~v~tn~G~LvhP~~s~eE 164 (199)
T PF01912_consen 86 DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTI-AGIKTVGSAAVATNKGGLVHPDASEEE 164 (199)
T ss_dssp TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--B-TTBS-CCCSEEE-SSEEEE-TT--HHH
T ss_pred CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEe-cCcccceeeEEEeCcEEEECCCCCHHH
Confidence 88888888888889999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q psy3572 215 ISVIESVFKLNE 226 (245)
Q Consensus 215 i~~Ie~~l~v~~ 226 (245)
++++|++|+++.
T Consensus 165 l~~l~~~l~v~~ 176 (199)
T PF01912_consen 165 LEELEELLGVPV 176 (199)
T ss_dssp HHHHHHHHTSSE
T ss_pred HHHHHHHhCCce
Confidence 999999999986
No 15
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2e-29 Score=220.90 Aligned_cols=127 Identities=26% Similarity=0.435 Sum_probs=122.8
Q ss_pred ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe------------------
Q psy3572 99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL------------------ 160 (245)
Q Consensus 99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L------------------ 160 (245)
++.+.||.|+.++|+||++||+.+++.++.|+++|+|||++++|+|+++||+++++|+||+|
T Consensus 9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~ 88 (222)
T COG1976 9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG 88 (222)
T ss_pred cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence 67899999999999999999999999999999999999999999999999999999666666
Q ss_pred -------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHH
Q psy3572 161 -------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEI 215 (245)
Q Consensus 161 -------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei 215 (245)
+||+.+++..|.|+++|+|++.+||+ +|.+.|||..++|+||+||||++|++|+
T Consensus 89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El 167 (222)
T COG1976 89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL 167 (222)
T ss_pred ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhCCCC
Q psy3572 216 SVIESVFKLNE 226 (245)
Q Consensus 216 ~~Ie~~l~v~~ 226 (245)
+++++.|||+.
T Consensus 168 e~Lse~f~V~v 178 (222)
T COG1976 168 EELSELFGVPV 178 (222)
T ss_pred HHHHHHhCeeE
Confidence 99999999986
No 16
>KOG3185|consensus
Probab=99.77 E-value=1.3e-18 Score=151.48 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=124.9
Q ss_pred ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhC--CceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhh
Q psy3572 99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL 176 (245)
Q Consensus 99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~ 176 (245)
++++.+|.|.-.++.||+|.-.-++.....++..|+ +|++.++|+|++++|++|+||-+|+|||..++|+|++.|++.
T Consensus 8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS 87 (245)
T KOG3185|consen 8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS 87 (245)
T ss_pred cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence 677999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3572 177 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 226 (245)
Q Consensus 177 l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~ 226 (245)
|.-++..-++-.-..++|+.+.|||+-|+|||+...+.-+.|.|+|++++
T Consensus 88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV 137 (245)
T KOG3185|consen 88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV 137 (245)
T ss_pred CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence 99999999999999999999999999999999999999999999999987
No 17
>PRK04323 hypothetical protein; Provisional
Probab=49.58 E-value=88 Score=24.60 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=45.8
Q ss_pred ceeEEEEeCceEEEcCCCChhHHHHHHhhhC-CceEEEEecCceeeeeEEEEcCCe-EeeCCCCCHHHHHHHh
Q psy3572 104 LGNVIACNDYVALVHPDLDRETEEILADTLN-VEVFRQTVSSNVLVGSYCALTNQG-GLVHPHTSPQDQDELS 174 (245)
Q Consensus 104 lGn~i~~ND~~alv~p~l~~~~~e~I~d~Lg-VeV~~~tIag~~lVGs~~v~Nn~G-~LV~p~~s~eEl~~l~ 174 (245)
.||++.+++=+|+++|+ |....+.+++.=. =.++..|-+ +-.=|+.+ ++.| ++++|-.++.=.+++.
T Consensus 10 fgn~V~~~rIIAIv~~~-Sap~Kr~~~~ak~~g~lidaT~G--rktrsvII-tds~hV~LSai~~eTl~~R~~ 78 (91)
T PRK04323 10 FGNIVSANRIIAIVSPE-SAPIKRIIQEARERGMLIDATYG--RKTRAVII-TDSGHVILSAIQPETIAHRLS 78 (91)
T ss_pred CCcEEEcccEEEEECCC-cHHHHHHHHHHHHcCeEEeccCC--CceeEEEE-ecCCeEEEeeCCHHHHHHHHh
Confidence 47899999999999999 6667676665432 346666643 22334444 5555 8899888877666664
No 18
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=38.23 E-value=2.4e+02 Score=27.15 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=41.6
Q ss_pred cCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe-----------eCCCCCHHHHH-HHhhhcCcc
Q psy3572 118 HPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL-----------VHPHTSPQDQD-ELSSLLQIP 180 (245)
Q Consensus 118 ~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L-----------V~p~~s~eEl~-~l~~~l~V~ 180 (245)
+.+.+...-+.|.+.+|++.++.. ..+=|=....|-+|-| =+|..|++|++ +|++.||+.
T Consensus 122 ~~~~D~~v~~~ia~~~g~~~~~~~---lvlEGG~ie~dG~GtlltTe~clln~nRNP~ls~~eIe~~Lk~~LGv~ 193 (357)
T TIGR03380 122 PWDKDDLVARKVCELEGIDRYRAD---FVLEGGSIHVDGEGTLLTTEECLLSEGRNPHLTKEQIEEKLKDYLGVE 193 (357)
T ss_pred CcchHHHHHHHHHHHcCCCccccC---eEEeCCcEEECCCeeEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCC
Confidence 456677888999999999988752 2223333333444433 36778888887 788889998
No 19
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=35.56 E-value=72 Score=24.52 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=37.1
Q ss_pred EEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHH-HHhhhcCcceee-eeee
Q psy3572 115 ALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLVA-GTVN 187 (245)
Q Consensus 115 alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~-~l~~~l~V~v~~-gTvN 187 (245)
.|.+|-+++++...+++. |...+.|+|+++..|++ .++.+|+|+|.. -|.|
T Consensus 4 iI~~PviTEK~~~~~e~~----------------------n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~ 56 (84)
T PRK14548 4 IIKYPLVTEKAMNLIEKE----------------------NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLI 56 (84)
T ss_pred chhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEE
Confidence 356777777776655432 56678999999999998 677889999743 4444
No 20
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=34.99 E-value=89 Score=23.87 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=47.5
Q ss_pred eeeeeeCCCceeeEEEecC-cEEEEecC---CChhHHHHHHHHhcC-------------CCceEEEeeccceeeeeEEee
Q psy3572 3 VRVQFENNNEVGVFSKLTN-SYCLVAIG---GSENFYSVFEAELAE-------------TIPVIHASLAGCRIIGRMSVG 65 (245)
Q Consensus 3 ~r~~~~gs~~IGvy~~~t~-~~~lvp~~---~~~~~~~~i~e~L~~-------------~v~vv~t~I~gs~lvG~l~~g 65 (245)
.++..+||.--|.+....| |+++..+. ...+..+.+++.|.. .||+++.....+.+-==++++
T Consensus 20 ~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~~ 99 (114)
T cd05402 20 AKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFN 99 (114)
T ss_pred CEEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEcc
Confidence 3678999998898887665 66666554 356677777776631 257777777766666667777
Q ss_pred cCCeEE
Q psy3572 66 NRHGLI 71 (245)
Q Consensus 66 N~nGll 71 (245)
|.+|+.
T Consensus 100 ~~~g~~ 105 (114)
T cd05402 100 NLNGIR 105 (114)
T ss_pred cchHHH
Confidence 777653
No 21
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.01 E-value=45 Score=25.77 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=37.8
Q ss_pred ceeEEEEeCceEEEcCCCChhHHHHHHhhhCCc-eEEEEecCceeeeeEEEEcCCeEeeCCC
Q psy3572 104 LGNVIACNDYVALVHPDLDRETEEILADTLNVE-VFRQTVSSNVLVGSYCALTNQGGLVHPH 164 (245)
Q Consensus 104 lGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVe-V~~~tIag~~lVGs~~v~Nn~G~LV~p~ 164 (245)
.||.+.+|--+|+|+|+-. ...+.|.|.-+-- .+-.|.+.- + -+..+..++-++++.-
T Consensus 10 FGNivsanRviaIVsPESa-PiKRii~eArdr~~LIDATYGRr-T-Ravii~DS~hvILSAi 68 (89)
T COG2052 10 FGNIVSANRVIAIVSPESA-PIKRIIQEARDRGMLIDATYGRR-T-RAVIITDSDHVILSAI 68 (89)
T ss_pred cccEeecceEEEEECCCcc-cHHHHHHHHHhcCcEEEcccCce-e-eEEEEecCCcEEEecc
Confidence 6899999999999999954 4567777765533 444444332 2 3445556666665543
No 22
>PLN02591 tryptophan synthase
Probab=32.81 E-value=1.9e+02 Score=26.28 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=65.4
Q ss_pred cCCeEEeCCCCCHHHHHHHHhhCC-CCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecC
Q psy3572 66 NRHGLIVPNATTDTELQHIRNSLP-DSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSS 144 (245)
Q Consensus 66 N~nGllvp~~~~d~El~~l~~~l~-~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag 144 (245)
.=+|+|+|+... +|.+.+++.+. .++ +.+.+++|..+++-.+.|.+.=.==+
T Consensus 106 Gv~GviipDLP~-ee~~~~~~~~~~~gl-------------------~~I~lv~Ptt~~~ri~~ia~~~~gFI------- 158 (250)
T PLN02591 106 GVHGLVVPDLPL-EETEALRAEAAKNGI-------------------ELVLLTTPTTPTERMKAIAEASEGFV------- 158 (250)
T ss_pred CCCEEEeCCCCH-HHHHHHHHHHHHcCC-------------------eEEEEeCCCCCHHHHHHHHHhCCCcE-------
Confidence 348999999876 55655554321 122 34678999999888787777622112
Q ss_pred ceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCcc---ceeeEEEEcCceEEEcCCC
Q psy3572 145 NVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSE---VIGAGMVVNDWAAFCGFDT 210 (245)
Q Consensus 145 ~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~---~VGsgivaNd~G~lvg~~t 210 (245)
.+|++..+--.+..+ |..-++-++++++..++|+..| +|.. -+....-..-.|++||+..
T Consensus 159 -Y~Vs~~GvTG~~~~~--~~~~~~~i~~vk~~~~~Pv~vG---FGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 159 -YLVSSTGVTGARASV--SGRVESLLQELKEVTDKPVAVG---FGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred -EEeeCCCCcCCCcCC--chhHHHHHHHHHhcCCCceEEe---CCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 244443333323221 3334555888999889998765 3333 2333222336788888754
No 23
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=30.48 E-value=1.8e+02 Score=28.18 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=44.0
Q ss_pred EeeCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCCCCCcchHHHHHH
Q psy3572 159 GLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRA 238 (245)
Q Consensus 159 ~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~~~~~~~~~~~~~ 238 (245)
++++|.....-.+.|++-+|+|..... ..+|.+-|..-+..|.+.||.+. ....+..|+
T Consensus 230 iv~~~~~~~~~a~~Le~~~giP~~~~~------------------~p~G~~~t~~~l~~l~~~~g~~~---~~~i~~er~ 288 (435)
T cd01974 230 LALQEYATEKTAKFLEKKCKVPVETLN------------------MPIGVAATDEFLMALSELTGKPI---PEELEEERG 288 (435)
T ss_pred EEECccccHHHHHHHHHHhCCCeeecC------------------CCcChHHHHHHHHHHHHHhCCCC---CHHHHHHHH
Confidence 346777777777788887888854432 35688999999999999999865 222344444
Q ss_pred hhhhh
Q psy3572 239 SLIDS 243 (245)
Q Consensus 239 ~~~~~ 243 (245)
.+.|.
T Consensus 289 ~~~~~ 293 (435)
T cd01974 289 RLVDA 293 (435)
T ss_pred HHHHH
Confidence 44443
No 24
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.66 E-value=71 Score=27.50 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=26.2
Q ss_pred eeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEE
Q psy3572 105 GNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT 141 (245)
Q Consensus 105 Gn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~t 141 (245)
..+|+.|+.+.- +|...+..+.+++.||++|++..
T Consensus 79 ~v~IvSNsaGs~--~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 79 RVLIVSNSAGSS--DDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred eEEEEECCCCcc--cCccHHHHHHHHHhhCCcEEEeC
Confidence 356666765432 25677889999999999999866
No 25
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=28.92 E-value=3e+02 Score=24.42 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=94.4
Q ss_pred HHHHHhcCC-CceEEEeec------cceeeeeEEeecCCeEEeCCCCC---HHHHHHHHhhCCC---C-ceEEEe-----
Q psy3572 37 VFEAELAET-IPVIHASLA------GCRIIGRMSVGNRHGLIVPNATT---DTELQHIRNSLPD---S-VKLQRV----- 97 (245)
Q Consensus 37 ~i~e~L~~~-v~vv~t~I~------gs~lvG~l~~gN~nGllvp~~~~---d~El~~l~~~l~~---~-v~v~~l----- 97 (245)
.+.+.|..+ ++|+...-. ++-+.-=..+--.+|+++.++.. ..|....+..+.. . -.+..+
T Consensus 36 ~l~~~L~~~Gv~V~~~~~~~~~~~p~~vF~rD~~~~~~~~~ii~~m~~~~R~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (281)
T PF02274_consen 36 ALVEALRSNGVEVIELPPLLEEPLPDMVFTRDPGVVIGGGVIIGRMRAPSRRGEEDVYKEIFEKHPFNIPRVLDIEEENG 115 (281)
T ss_dssp HHHHHHHTTT-EEEEEHHHHHTT-TTTT-TTCCEEEECTEEEE-B-SSGGGHGHHHHHHHHHHHSCCCTCCEEEEEEC--
T ss_pred HHHHHHHhCCcEEEEeCCccCCCCCCeEEcCCcEEEEcCCEEEeCCChHHhcCcchHHHHHHHhhccccceeeCCccccc
Confidence 344444433 777776543 33333322333668999998865 3455555443211 1 122222
Q ss_pred -cccCCcceeEEEEeCceEE--EcCCCChhHHHHHHhhhCCc------eEEEEe---cCceeeeeEEEEcCCeEeeCCCC
Q psy3572 98 -EERLSALGNVIACNDYVAL--VHPDLDRETEEILADTLNVE------VFRQTV---SSNVLVGSYCALTNQGGLVHPHT 165 (245)
Q Consensus 98 -~~~~~alGn~i~~ND~~al--v~p~l~~~~~e~I~d~LgVe------V~~~tI---ag~~lVGs~~v~Nn~G~LV~p~~ 165 (245)
+..+.- |.++..+++..+ +..--+++.++.+++.|+-. +....- .-..+=-.++.+..+-++++|.+
T Consensus 116 ~~~~lEG-GDv~~~~~~~~v~G~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~ 194 (281)
T PF02274_consen 116 DPGYLEG-GDVLVLGDNVLVIGVGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDA 194 (281)
T ss_dssp TTS-B-G-GGEEEESTEEEEEEESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCH
T ss_pred cCceecC-cEEEEECCEEEEEeecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcc
Confidence 345555 999988888777 67788899999999999988 111111 12223346778888889988887
Q ss_pred CHHH-HHHHhhhcC---cceeeeeeecCccceeeEEEEcCceEEEcCC
Q psy3572 166 SPQD-QDELSSLLQ---IPLVAGTVNRGSEVIGAGMVVNDWAAFCGFD 209 (245)
Q Consensus 166 s~eE-l~~l~~~l~---V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~ 209 (245)
-+++ .+.+.+.|+ .+++.-+--.--.+-+|.+..++.-+++...
T Consensus 195 ~~~~~~~~l~~~l~~~~~~iI~v~~~e~~~~~~N~l~l~~~~vi~~~~ 242 (281)
T PF02274_consen 195 FDPEEEEELEQALKERGFEIIEVPEEEQWNFACNVLSLGPGKVIAYAS 242 (281)
T ss_dssp HCTHHHHHHHHHHSSSTCEEEEESSCSCSGGGGS-EEECTTEEEEETT
T ss_pred cchHHHHHHHHHhcccCcEEEEeccchhhhccCCEEEecCCEEEECCC
Confidence 6554 666776655 4554444222223444444666555555544
No 26
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=28.69 E-value=3.3e+02 Score=24.14 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=62.9
Q ss_pred eCCCCCHHHHHHHHhhCCCC------ceEEEecccCCcc---eeEEEEeCceEEEcCCCCh-hHHHHHHhhhC---CceE
Q psy3572 72 VPNATTDTELQHIRNSLPDS------VKLQRVEERLSAL---GNVIACNDYVALVHPDLDR-ETEEILADTLN---VEVF 138 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~------v~v~~l~~~~~al---Gn~i~~ND~~alv~p~l~~-~~~e~I~d~Lg---VeV~ 138 (245)
+...++.+=++.|++.++.. +.+.+ +.....+ -.+-...++.++++|++-+ ...+.+.+.|+ .+++
T Consensus 137 ~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~HLD~~~~~l~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~iI 215 (281)
T PF02274_consen 137 VGSRTNEEGIEQLARALGEEEVVFEVVVVVV-PVDPGFLHLDTVFNPLDPDLVLVYPDAFDPEEEEELEQALKERGFEII 215 (281)
T ss_dssp ESSSS-HHHHHHHHHHHCCTTSESEEEEEEE-EECSSSSSGGGTEEEEETTEEEEECCHHCTHHHHHHHHHHSSSTCEEE
T ss_pred ecCCCCHHHHHHHHHHhcccccccccceeec-cCccCccccceEEEEcCCCEEEEeCcccchHHHHHHHHHhcccCcEEE
Confidence 67788888899999988777 12222 2211111 1233445666777666544 44777888877 6788
Q ss_pred EEEecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCccee
Q psy3572 139 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLV 182 (245)
Q Consensus 139 ~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~ 182 (245)
..+-.....-|+-++.=+.|-++.+.....-.+.|++ -|+.+.
T Consensus 216 ~v~~~e~~~~~~N~l~l~~~~vi~~~~~~~~~~~L~~-~G~~v~ 258 (281)
T PF02274_consen 216 EVPEEEQWNFACNVLSLGPGKVIAYASNPRTNEQLEK-AGIEVI 258 (281)
T ss_dssp EESSCSCSGGGGS-EEECTTEEEEETTHHHHHHHHHH-TT-EEE
T ss_pred EeccchhhhccCCEEEecCCEEEECCCCHHHHHHHHh-cCCeEE
Confidence 8775443333333332255666666666666677766 466653
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=28.20 E-value=3.2e+02 Score=25.96 Aligned_cols=135 Identities=12% Similarity=0.164 Sum_probs=71.6
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCce----EEEEecCc--
Q psy3572 72 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEV----FRQTVSSN-- 145 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV----~~~tIag~-- 145 (245)
||..++++||+.+-+....-..|.++.++.+.- +--+|+|--.-.+++.+.|++.=+.++ ++...+..
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~------srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~ 188 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGY------SFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG 188 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc------cCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc
Confidence 699999999998865433324455554443321 113688877767777788876433332 22111110
Q ss_pred -ee-eeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcC-ceEEEcCCCCHHHHHHHHHHh
Q psy3572 146 -VL-VGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVND-WAAFCGFDTTSTEISVIESVF 222 (245)
Q Consensus 146 -~l-VGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd-~G~lvg~~tT~~Ei~~Ie~~l 222 (245)
.. -=.+.|.| +++.+++++|+++-+-++. +..-++-... .-| .. .-++|.-++.+.-.+.|+..=
T Consensus 189 ~~~~~~~lfV~n-----Lp~~vtee~L~~~F~~fG~-V~~v~i~~d~-~tg-----~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 189 ESIKDTNLYVTN-----LPRTITDDQLDTIFGKYGQ-IVQKNILRDK-LTG-----TPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred cccccceeEEeC-----CCCcccHHHHHHHHHhcCC-EEEEEEeecC-CCC-----ccceEEEEEECCHHHHHHHHHHhC
Confidence 00 00011111 6899999999887665552 2111110000 000 01 147888888777777777655
Q ss_pred CC
Q psy3572 223 KL 224 (245)
Q Consensus 223 ~v 224 (245)
+.
T Consensus 257 g~ 258 (346)
T TIGR01659 257 NV 258 (346)
T ss_pred CC
Confidence 44
No 28
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=25.74 E-value=1.6e+02 Score=21.94 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=35.8
Q ss_pred cCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceE
Q psy3572 20 TNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKL 94 (245)
Q Consensus 20 t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v 94 (245)
...|.-+|.+..+++-.. --+ -.-|+.+|+|+.+=+++.-.-+.+.++| +..+=.+.+.....|.+.|
T Consensus 11 ~~~fv~vP~~v~~~l~~~---~~g--~v~V~~tI~g~~~~~sl~p~g~G~~~Lp--v~~~vRk~~g~~~Gd~V~v 78 (80)
T PF08922_consen 11 GWTFVEVPFDVAEELGEG---GWG--RVPVRGTIDGHPWRTSLFPMGNGGYILP--VKAAVRKAIGKEAGDTVEV 78 (80)
T ss_dssp S-EEEE--S-HHHHH--S-----S---EEEEEEETTEEEEEEEEESSTT-EEEE--E-HHHHHHHT--TTSEEEE
T ss_pred ceEEEEeCHHHHHHhccc---cCC--ceEEEEEECCEEEEEEEEECCCCCEEEE--EcHHHHHHcCCCCCCEEEE
Confidence 345666787765443221 112 5578999999999999999666788898 3333333444333433554
No 29
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=24.83 E-value=3.8e+02 Score=25.88 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=72.6
Q ss_pred CHHHHHHHHhhCC-CCceEEEecccCC---cceeEEEEeCceE--------------EEcCCCChhHHHHHHhhhCCceE
Q psy3572 77 TDTELQHIRNSLP-DSVKLQRVEERLS---ALGNVIACNDYVA--------------LVHPDLDRETEEILADTLNVEVF 138 (245)
Q Consensus 77 ~d~El~~l~~~l~-~~v~v~~l~~~~~---alGn~i~~ND~~a--------------lv~p~l~~~~~e~I~d~LgVeV~ 138 (245)
.+++++.-|..|+ .+|.+.+++...+ .-|-.++.||+.- ..+-+.++...+++.+.++....
T Consensus 67 ~~~~~~~a~a~l~~~~V~~~~i~~nDtW~RDtGP~~~i~~~g~~~a~d~~FNaWGGlkf~~e~Dd~Va~k~~~~~~k~~~ 146 (346)
T COG2957 67 PDDDLEDARARLDDANVEIVRIDTNDTWLRDTGPTIVINDKGDLRAVDFGFNAWGGLKFPWELDDQVASKLAELLFKAPL 146 (346)
T ss_pred chHHHHHHHhhcCCCceEEEEccCCCcHhhccCCcEEecCCCcEEEecceeccccccccccccchHHHHHHHHhhccCcc
Confidence 4677888888887 4588888876554 3465666666643 45677888999999999995444
Q ss_pred EEE-----ecCceeeeeEEEEcCCeEee----CCCCCHHHHH-HHhhhcCcc
Q psy3572 139 RQT-----VSSNVLVGSYCALTNQGGLV----HPHTSPQDQD-ELSSLLQIP 180 (245)
Q Consensus 139 ~~t-----Iag~~lVGs~~v~Nn~G~LV----~p~~s~eEl~-~l~~~l~V~ 180 (245)
++. =+....=|-=.+.+..-||+ +|..++++++ .|++.||++
T Consensus 147 ~~~~fiLEGGsi~~dG~Gt~LTT~~CLLn~nRNPhl~~~~ie~~L~e~Lg~k 198 (346)
T COG2957 147 KTDPFILEGGSIHSDGEGTLLTTEQCLLNDNRNPHLNQEGIENKLKEYLGAK 198 (346)
T ss_pred ccCCeeeecCceeecCceeEEeehHhhcCCCCCCCcCHHHHHHHHHHHhCcc
Confidence 321 12223345555666666776 8999999998 688889987
No 30
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=24.47 E-value=1e+02 Score=28.48 Aligned_cols=172 Identities=18% Similarity=0.260 Sum_probs=111.8
Q ss_pred eCCCceeeEEEecCcEE------------EEecCC----ChhHHHHHHHHhc-CCCceEEEeeccceeeeeEEeecCCeE
Q psy3572 8 ENNNEVGVFSKLTNSYC------------LVAIGG----SENFYSVFEAELA-ETIPVIHASLAGCRIIGRMSVGNRHGL 70 (245)
Q Consensus 8 ~gs~~IGvy~~~t~~~~------------lvp~~~----~~~~~~~i~e~L~-~~v~vv~t~I~gs~lvG~l~~gN~nGl 70 (245)
.|-+.||.|..+.+-|+ ++--.- -+.....++.... +.-|+|+-.++....|=.+.=---.++
T Consensus 14 ~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g~~~~Ikq~LD~GAqtl 93 (255)
T COG3836 14 AGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVGDPVMIKQLLDIGAQTL 93 (255)
T ss_pred CCCceEEeeecCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCCCHHHHHHHHcccccee
Confidence 67889999999888664 332111 2344445555544 235799999999888877777778899
Q ss_pred EeCCCCCHHHHHHHHhhC---CCCce-E---EEecccCCcceeEEE-EeCceEEEcCCCChhHHHHHHhhhCCceEEEEe
Q psy3572 71 IVPNATTDTELQHIRNSL---PDSVK-L---QRVEERLSALGNVIA-CNDYVALVHPDLDRETEEILADTLNVEVFRQTV 142 (245)
Q Consensus 71 lvp~~~~d~El~~l~~~l---~~~v~-v---~~l~~~~~alGn~i~-~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI 142 (245)
|+|..-+-++-+++-... |.++. | .---++.+.+..|.. +||+.|++-.--+++-.+.+.+.+.||=+-+
T Consensus 94 liPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVDg-- 171 (255)
T COG3836 94 LIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVDG-- 171 (255)
T ss_pred eeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCCe--
Confidence 999999999988885443 33321 1 011245556666654 9999999988888888888888777763322
Q ss_pred cCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeee
Q psy3572 143 SSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGT 185 (245)
Q Consensus 143 ag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gT 185 (245)
-++|..=..-+.|.+-+|.- ++-.+.|+..+..-.-.|+
T Consensus 172 ---vFiGPaDLaas~G~~gn~~h-peV~~aI~~~~~~i~aaGK 210 (255)
T COG3836 172 ---VFIGPADLAASLGHLGNPGH-PEVQAAIEHIIARIRAAGK 210 (255)
T ss_pred ---EEECHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHhcCC
Confidence 24454445567787777764 3445566665444334444
No 31
>KOG1511|consensus
Probab=24.08 E-value=80 Score=30.86 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=36.5
Q ss_pred eeeEEEecC------cEEEEecCCChhHHHHHHHHhcCC-CceEEEeeccce
Q psy3572 13 VGVFSKLTN------SYCLVAIGGSENFYSVFEAELAET-IPVIHASLAGCR 57 (245)
Q Consensus 13 IGvy~~~t~------~~~lvp~~~~~~~~~~i~e~L~~~-v~vv~t~I~gs~ 57 (245)
.|++.++|. -++|+|++..++.++.++++|.+| .++..|.++|.-
T Consensus 325 ~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~gf~v~~t~lGG~G 376 (397)
T KOG1511|consen 325 LGIHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESHGFEVFETELGGPG 376 (397)
T ss_pred hCcceecccCCCCceEEEEECCCCchHHHHHHHHHHHhcCcceeeccCCCCc
Confidence 455556665 378999999999999999999865 789999998853
No 32
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.55 E-value=5.1e+02 Score=24.07 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=69.9
Q ss_pred CeEEeCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCcee
Q psy3572 68 HGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVL 147 (245)
Q Consensus 68 nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~l 147 (245)
+|+|+|+.-.|+.-+..+..-..++ |.+-|++|..+++..+.|.+.=.=-++-.+..|..
T Consensus 124 dGlivpDLP~ee~~~~~~~~~~~gi-------------------~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvT- 183 (265)
T COG0159 124 DGLLVPDLPPEESDELLKAAEKHGI-------------------DPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVT- 183 (265)
T ss_pred CEEEeCCCChHHHHHHHHHHHHcCC-------------------cEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccccc-
Confidence 6999999887665533332200112 34678999999998888887654344443333321
Q ss_pred eeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCccc---eeeEEEEcCceEEEcCCCCHHHHHHHHHHhC
Q psy3572 148 VGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEV---IGAGMVVNDWAAFCGFDTTSTEISVIESVFK 223 (245)
Q Consensus 148 VGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~---VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~ 223 (245)
--+.- ++.. .++-+++++++.++|+..|= |..- +-...-+ -.|++||+.. ++.|++...
T Consensus 184 -------G~~~~-~~~~-~~~~v~~vr~~~~~Pv~vGF---GIs~~e~~~~v~~~-ADGVIVGSAi----V~~i~~~~~ 245 (265)
T COG0159 184 -------GARNP-VSAD-VKELVKRVRKYTDVPVLVGF---GISSPEQAAQVAEA-ADGVIVGSAI----VKIIEEGLD 245 (265)
T ss_pred -------CCCcc-cchh-HHHHHHHHHHhcCCCeEEec---CcCCHHHHHHHHHh-CCeEEEcHHH----HHHHHhccc
Confidence 11111 2222 68889999999999987762 2221 1111122 6788888643 456666554
No 33
>PLN02334 ribulose-phosphate 3-epimerase
Probab=23.42 E-value=5e+02 Score=22.62 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred CcEEEEecCCC---hhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCC-HHHHHHHHhhCCCCceEEE
Q psy3572 21 NSYCLVAIGGS---ENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATT-DTELQHIRNSLPDSVKLQR 96 (245)
Q Consensus 21 ~~~~lvp~~~~---~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~-d~El~~l~~~l~~~v~v~~ 96 (245)
++|.+.|...+ .++.+.+++.+...++.++..+.+..+ +|+... .+.++.||+.....+.++.
T Consensus 6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f-------------~~~~~~g~~~~~~l~~~~~~~~~vhl 72 (229)
T PLN02334 6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHF-------------VPNLTIGPPVVKALRKHTDAPLDCHL 72 (229)
T ss_pred CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCc-------------CCccccCHHHHHHHHhcCCCcEEEEe
Confidence 67777776543 356678888887669999998877544 444332 3667788765322335543
Q ss_pred ec-ccCCcceeEEEEeCceEEEcCC--CChhHHHHHHhhhC
Q psy3572 97 VE-ERLSALGNVIACNDYVALVHPD--LDRETEEILADTLN 134 (245)
Q Consensus 97 l~-~~~~alGn~i~~ND~~alv~p~--l~~~~~e~I~d~Lg 134 (245)
+= +-..-+-.+..+.=++..+|.+ .++...+.++..++
T Consensus 73 mv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~ 113 (229)
T PLN02334 73 MVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKS 113 (229)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHH
Confidence 32 1111122223334455666776 23444455555444
No 34
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.78 E-value=1.6e+02 Score=22.79 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=40.1
Q ss_pred EeeCCCCCHHHHHHHhhhc-------CcceeeeeeecCccceeeEEEEcCce--EEEcCCCCHHHHHHHHHHhCCCC
Q psy3572 159 GLVHPHTSPQDQDELSSLL-------QIPLVAGTVNRGSEVIGAGMVVNDWA--AFCGFDTTSTEISVIESVFKLNE 226 (245)
Q Consensus 159 ~LV~p~~s~eEl~~l~~~l-------~V~v~~gTvN~G~~~VGsgivaNd~G--~lvg~~tT~~Ei~~Ie~~l~v~~ 226 (245)
++++|+.++++++.+-+-+ |..+..-. +.|..-+-=-|==+.+| ++++-+.++.-+..+++.|++.+
T Consensus 12 ~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~-~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 12 YLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQ-NRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE-eecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 5799999999988665543 22222211 22322221112224555 45566677889999999998866
No 35
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.91 E-value=65 Score=30.99 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=52.1
Q ss_pred eEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhC
Q psy3572 15 VFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSL 88 (245)
Q Consensus 15 vy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l 88 (245)
++++.||.|.+.|+-++.... + -=.|.-++++-..-|+-..==+-+|++|.....++|+.+-++.
T Consensus 50 ~la~tTD~~~i~P~ff~~~di-------G--~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i~~si 114 (339)
T COG0309 50 VLAFTTDPFVIDPLFFPGGDI-------G--KLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERILKSI 114 (339)
T ss_pred eEEEEeCCeEecccccCCCce-------E--EEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHHHHHH
Confidence 899999999999988776521 1 1257778888888888777778899999999999999886554
No 36
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.44 E-value=54 Score=29.79 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=71.5
Q ss_pred CceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhC---CCCceEEEecccCCccee---E-EEEeCceEEEc
Q psy3572 46 IPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSL---PDSVKLQRVEERLSALGN---V-IACNDYVALVH 118 (245)
Q Consensus 46 v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l---~~~v~v~~l~~~~~alGn---~-i~~ND~~alv~ 118 (245)
.++||..-..-..+....=.--.|+++|..-|-+|.+.+-+.. |.+..=.--..+.+..|. | -.+|++..+++
T Consensus 71 ~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~ 150 (256)
T PRK10558 71 APVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLV 150 (256)
T ss_pred CcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEE
Confidence 5688888888888888877788999999999999999986643 222110000012222222 1 23688888888
Q ss_pred CCCChhHHHHHHhhhCCc-eEEEEecCceeeeeE
Q psy3572 119 PDLDRETEEILADTLNVE-VFRQTVSSNVLVGSY 151 (245)
Q Consensus 119 p~l~~~~~e~I~d~LgVe-V~~~tIag~~lVGs~ 151 (245)
.-=+.+.++.+++.+.++ |--..++-.-|-.++
T Consensus 151 ~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~sl 184 (256)
T PRK10558 151 QIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 184 (256)
T ss_pred EECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHc
Confidence 888889999999999887 444556666555444
No 37
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=21.27 E-value=94 Score=28.10 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=70.0
Q ss_pred CceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhC---CCCceEEEecccCCccee---E-EEEeCceEEEc
Q psy3572 46 IPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSL---PDSVKLQRVEERLSALGN---V-IACNDYVALVH 118 (245)
Q Consensus 46 v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l---~~~v~v~~l~~~~~alGn---~-i~~ND~~alv~ 118 (245)
.++||..-..-..+....=.--.|+++|..-|-+|.+.+.+.. |.+..=.--..+....|. | -.+|++..+++
T Consensus 64 ~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~ 143 (249)
T TIGR03239 64 APVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLV 143 (249)
T ss_pred CcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEE
Confidence 4688887777777888777788999999999999999997653 222110000001122221 1 23678888888
Q ss_pred CCCChhHHHHHHhhhCCc-eEEEEecCceeeeeE
Q psy3572 119 PDLDRETEEILADTLNVE-VFRQTVSSNVLVGSY 151 (245)
Q Consensus 119 p~l~~~~~e~I~d~LgVe-V~~~tIag~~lVGs~ 151 (245)
.-=+.+.++.+++.+.++ |--..++-.-|--++
T Consensus 144 ~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~sl 177 (249)
T TIGR03239 144 QIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAAL 177 (249)
T ss_pred EECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHc
Confidence 888889999999999887 444455555443333
No 38
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.65 E-value=4.1e+02 Score=24.15 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=63.6
Q ss_pred CCeEEeCCCCCHHHHHHHHhhCCC-CceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCc
Q psy3572 67 RHGLIVPNATTDTELQHIRNSLPD-SVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSN 145 (245)
Q Consensus 67 ~nGllvp~~~~d~El~~l~~~l~~-~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~ 145 (245)
=+|+|+|+... +|.+.+.+.+.. ++ +.+.+++|..+++.++.|.+.=.==++-.+..|.
T Consensus 118 vdGviipDLp~-ee~~~~~~~~~~~gl-------------------~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 118 VDGLIIPDLPP-EEAEELRAAAKKHGL-------------------DLIFLVAPTTTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred CcEEEECCCCH-HHHHHHHHHHHHcCC-------------------cEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 38999999876 466666543211 12 2356789999988888877762211332222221
Q ss_pred eeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCcc---ceeeEEEEcCceEEEcCCCCH
Q psy3572 146 VLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSE---VIGAGMVVNDWAAFCGFDTTS 212 (245)
Q Consensus 146 ~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~---~VGsgivaNd~G~lvg~~tT~ 212 (245)
-|+ ..+. |..-++.++++++..++|+..| +|.. -+....-. -.|++||+....
T Consensus 178 --TG~-----~~~~---~~~~~~~i~~vk~~~~~pv~vG---fGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 178 --TGA-----RSAD---AADLAELVARLKAHTDLPVAVG---FGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred --CCc-----ccCC---CccHHHHHHHHHhcCCCcEEEE---cccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 111 1121 4445678899999889887654 2331 11111111 578999886653
Done!