Query psy3572
Match_columns 245
No_of_seqs 164 out of 459
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:05:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_J EIF6, translation initi 100.0 3.9E-86 1.3E-90 590.7 17.9 244 1-244 4-247 (248)
2 1g62_A Ribosome anti-associati 100.0 1.4E-81 4.9E-86 554.7 17.4 224 1-224 1-224 (224)
3 4adx_I AIF6; ribosome, protein 100.0 6.7E-72 2.3E-76 493.0 29.5 221 1-226 1-221 (222)
4 1g61_A EIF-6, translation init 100.0 4.7E-71 1.6E-75 489.2 14.9 221 1-224 3-227 (228)
5 4adx_I AIF6; ribosome, protein 100.0 1.2E-39 4.3E-44 287.3 22.5 172 2-179 46-219 (222)
6 1g61_A EIF-6, translation init 100.0 7.2E-37 2.5E-41 270.6 8.2 172 3-179 49-227 (228)
7 1g62_A Ribosome anti-associati 100.0 8.1E-32 2.8E-36 237.6 8.4 124 9-179 100-224 (224)
8 4a18_J EIF6, translation initi 100.0 1.5E-28 5E-33 219.5 9.7 127 99-226 11-184 (248)
9 3i4a_A N(G),N(G)-dimethylargin 71.5 55 0.0019 29.1 12.5 148 68-220 109-274 (308)
10 3i4a_A N(G),N(G)-dimethylargin 59.6 48 0.0016 29.5 9.3 124 14-142 152-285 (308)
11 1jdw_A L-arginine\:glycine ami 49.2 49 0.0017 30.8 7.8 107 73-182 270-391 (423)
12 1h70_A NG, NG-dimethylarginine 36.8 99 0.0034 26.2 7.3 102 28-142 132-238 (255)
13 1jdw_A L-arginine\:glycine ami 36.2 1.7E+02 0.0059 27.1 9.3 117 21-142 262-395 (423)
14 1wex_A Hypothetical protein (r 34.3 98 0.0033 22.6 6.0 54 61-131 17-70 (104)
15 3j21_T 50S ribosomal protein L 30.5 84 0.0029 23.2 5.0 50 116-187 7-58 (86)
16 1vq8_S 50S ribosomal protein L 29.6 75 0.0026 23.4 4.6 50 116-187 6-57 (85)
17 3lqv_A PRE-mRNA branch site pr 27.8 63 0.0022 23.2 3.9 101 61-180 10-110 (115)
18 2jer_A Agmatine deiminase; hyd 26.5 57 0.002 30.4 4.2 103 79-181 69-202 (389)
19 4f25_A Polyadenylate-binding p 26.1 1.2E+02 0.004 22.0 5.2 61 62-135 8-68 (115)
20 2zjr_Q 50S ribosomal protein L 25.8 55 0.0019 24.6 3.3 33 155-187 23-57 (95)
21 3r8s_T 50S ribosomal protein L 25.4 85 0.0029 23.4 4.3 50 116-187 11-62 (93)
22 2ad9_A Polypyrimidine tract-bi 24.7 1.5E+02 0.0052 22.5 5.8 48 72-131 39-86 (119)
23 1x4c_A Splicing factor, argini 23.8 1.1E+02 0.0039 21.7 4.7 48 72-132 23-70 (108)
24 2dgt_A RNA-binding protein 30; 23.7 1.4E+02 0.0049 20.3 5.1 47 72-132 18-64 (92)
25 2cjk_A Nuclear polyadenylated 21.8 2.4E+02 0.0084 20.8 8.7 89 72-178 11-112 (167)
26 2zkr_s 60S ribosomal protein L 21.2 1.9E+02 0.0064 23.7 5.9 51 115-187 76-128 (156)
27 1sjq_A Polypyrimidine tract-bi 20.9 1.2E+02 0.004 22.7 4.3 50 72-133 24-73 (105)
28 3h7c_X Agmatine deiminase; str 20.8 2.1E+02 0.0072 26.5 6.9 99 79-180 67-206 (383)
No 1
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=3.9e-86 Score=590.69 Aligned_cols=244 Identities=64% Similarity=1.107 Sum_probs=224.3
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E 83 (248)
T 4a18_J 4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE 83 (248)
T ss_dssp CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572 81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|+||+|||++|||++||+||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus 84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~L 163 (248)
T 4a18_J 84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGL 163 (248)
T ss_dssp HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCCCCCcchHHHHHHhh
Q psy3572 161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240 (245)
Q Consensus 161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (245)
|||.++++|+++|+++|+||+..||+|+|+++||+|++||||||+|||+||++|+++||++||++++++.++..+||++|
T Consensus 164 Vhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 243 (248)
T 4a18_J 164 VHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243 (248)
T ss_dssp ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHHTTCC---------------
T ss_pred ECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999977888999999999
Q ss_pred hhhh
Q psy3572 241 IDSI 244 (245)
Q Consensus 241 ~~~~ 244 (245)
||++
T Consensus 244 ~~~~ 247 (248)
T 4a18_J 244 VMNL 247 (248)
T ss_dssp ----
T ss_pred Hhhc
Confidence 9986
No 2
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=1.4e-81 Score=554.65 Aligned_cols=224 Identities=76% Similarity=1.214 Sum_probs=222.9
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||+|||++++|+|
T Consensus 1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (224)
T 1g62_A 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE 80 (224)
T ss_dssp CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572 81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|++|+|||++|||++||+||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus 81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~L 160 (224)
T 1g62_A 81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL 160 (224)
T ss_dssp HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572 161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224 (245)
Q Consensus 161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v 224 (245)
|||+++++|+++|+++|+||+.+||+|+|+++||||++|||||++|||+||++|+++||++|++
T Consensus 161 VhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~f~v 224 (224)
T 1g62_A 161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224 (224)
T ss_dssp ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 3
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.7e-72 Score=493.01 Aligned_cols=221 Identities=31% Similarity=0.516 Sum_probs=218.1
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus 1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e 78 (222)
T 4adx_I 1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE 78 (222)
T ss_pred CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572 81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||+ ++++|.++++|++|+||+++|||++|||||++++++++.|+|+|||+|++.+|++..+||+++++||+|+|
T Consensus 79 ~~~l~~---~~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~l 155 (222)
T 4adx_I 79 IDALAA---AGVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGAL 155 (222)
T ss_pred HHHHHh---cCCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEE
Confidence 999998 37999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3572 161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 226 (245)
Q Consensus 161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~ 226 (245)
|||+++++|+++|+++|+||+.+||+|+|+++||||++|||||++|||+||++|+++||++||+.+
T Consensus 156 VhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~f~~~~ 221 (222)
T 4adx_I 156 LNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221 (222)
T ss_pred ECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 4
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=4.7e-71 Score=489.22 Aligned_cols=221 Identities=31% Similarity=0.486 Sum_probs=218.8
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus 3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e 80 (228)
T 1g61_A 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE 80 (228)
T ss_dssp CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhC---CCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCC
Q psy3572 81 LQHIRNSL---PDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQ 157 (245)
Q Consensus 81 l~~l~~~l---~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~ 157 (245)
+++||++| |++++|+++++|++|+||+++|||++||+||++ ++..+.|+|+|+|+|++.+|++..++|++++++|+
T Consensus 81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~ 159 (228)
T 1g61_A 81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK 159 (228)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceEEEEeCCccceeeEEEEecc
Confidence 99999998 789999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred eEeeCCCCCHHHHHHHhhhcCcc-eeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572 158 GGLVHPHTSPQDQDELSSLLQIP-LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224 (245)
Q Consensus 158 G~LV~p~~s~eEl~~l~~~l~V~-v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v 224 (245)
|+||||+++++|+++|+++|+|| +.+||+|+|+++||||++|||||++|||+||++|+++||++||+
T Consensus 160 G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 160 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred eEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999997
No 5
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.2e-39 Score=287.31 Aligned_cols=172 Identities=20% Similarity=0.285 Sum_probs=162.6
Q ss_pred ceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHH
Q psy3572 2 AVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTEL 81 (245)
Q Consensus 2 ~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El 81 (245)
+.|++|+|+++||+|++.|++++|||++++++..+.|++ ++ +++.+++ ++++.+|.|+++|+||+|||+.++++|+
T Consensus 46 ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~--v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~ 121 (222)
T 4adx_I 46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AG--VEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDAL 121 (222)
T ss_pred EEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cC--CeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHH
Confidence 378999999999999999999999999999999999999 57 9999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEec-CceeeeeEEEEcCCeE
Q psy3572 82 QHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVS-SNVLVGSYCALTNQGG 159 (245)
Q Consensus 82 ~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~ 159 (245)
+.|++.|+ ++|.+.. .+++++||++++||++|||||+++++..+.|+|+||||+.++|++ |+++|||.+++||+|+
T Consensus 122 e~I~d~L~--VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~ 199 (222)
T 4adx_I 122 QVIGDVLE--VDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGV 199 (222)
T ss_pred HHHHHhhC--ccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEE
Confidence 99999874 5554432 469999999999999999999999999999999999999999997 9999999999999999
Q ss_pred eeCCCCCHHHHHHHhhhcCc
Q psy3572 160 LVHPHTSPQDQDELSSLLQI 179 (245)
Q Consensus 160 LV~p~~s~eEl~~l~~~l~V 179 (245)
++||++++.|+++|+++|+.
T Consensus 200 lvg~~TT~~El~~ie~~f~~ 219 (222)
T 4adx_I 200 LVGEETTGPELARIEEALGF 219 (222)
T ss_pred EECCCCCHHHHHHHHHHhcc
Confidence 99999999999999999984
No 6
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=7.2e-37 Score=270.61 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=158.4
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhc---CC--CceEEEeeccceeeeeEEeecCCeEEeCCCCC
Q psy3572 3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELA---ET--IPVIHASLAGCRIIGRMSVGNRHGLIVPNATT 77 (245)
Q Consensus 3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~---~~--v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~ 77 (245)
.|.+|+|+++||+|++.|++++|||++.+++.++.|++.|+ +. |+++++ +++.+|.++++|+||+|||+-.
T Consensus 49 v~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~---~~~alGnli~~Nd~galV~~el- 124 (228)
T 1g61_A 49 LQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPEL- 124 (228)
T ss_dssp EECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGG-
T ss_pred EEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcC---CCcceEEEEEecCccEEeCHHH-
Confidence 58899999999999999999999999999999999999994 22 456664 9999999999999999999966
Q ss_pred HHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCc-eEEEEec-CceeeeeEEEEc
Q psy3572 78 DTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVE-VFRQTVS-SNVLVGSYCALT 155 (245)
Q Consensus 78 d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVe-V~~~tIa-g~~lVGs~~v~N 155 (245)
++..+.|++.|+.++.++++.++.++.||.+++| ++|||||+++++..+.|+|+|||| +.++|++ |+++|||.+++|
T Consensus 125 ~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN-~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaN 203 (228)
T 1g61_A 125 KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTN-KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIAN 203 (228)
T ss_dssp GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECS-SEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEEC
T ss_pred HHHHHHHHHhcCCceEEEEeCCccceeeEEEEec-ceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEE
Confidence 5555666777776777788999999999999999 999999999999999999999999 9999999 999999999999
Q ss_pred CCeEeeCCCCCHHHHHHHhhhcCc
Q psy3572 156 NQGGLVHPHTSPQDQDELSSLLQI 179 (245)
Q Consensus 156 n~G~LV~p~~s~eEl~~l~~~l~V 179 (245)
|+|+++||+++++|+++|+++|++
T Consensus 204 n~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 204 SKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp SSCEEEETTCCHHHHHHHHHHHTC
T ss_pred CCEEEECCCCCHHHHHHHHHHhcc
Confidence 999999999999999999999986
No 7
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=99.97 E-value=8.1e-32 Score=237.58 Aligned_cols=124 Identities=17% Similarity=0.229 Sum_probs=121.4
Q ss_pred CCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhC
Q psy3572 9 NNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSL 88 (245)
Q Consensus 9 gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l 88 (245)
.-++||+|+++||+||||||++++++.+.|+++|+ ||+++++|+|+++||++++||+
T Consensus 100 ~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn--------------------- 156 (224)
T 1g62_A 100 RLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSN--------------------- 156 (224)
T ss_dssp CSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECS---------------------
T ss_pred cCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCcceEEEEEEEeC---------------------
Confidence 45899999999999999999999999999999999 9999999999999999999995
Q ss_pred CCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe-cCceeeeeEEEEcCCeEeeCCCCCH
Q psy3572 89 PDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV-SSNVLVGSYCALTNQGGLVHPHTSP 167 (245)
Q Consensus 89 ~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LV~p~~s~ 167 (245)
++|||||+++++..+.|+|+||||+.++|| +|+++|||.+++||+|+|+||++++
T Consensus 157 ------------------------~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~ 212 (224)
T 1g62_A 157 ------------------------QGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTA 212 (224)
T ss_dssp ------------------------SCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCH
T ss_pred ------------------------cEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCH
Confidence 999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHhhhcCc
Q psy3572 168 QDQDELSSLLQI 179 (245)
Q Consensus 168 eEl~~l~~~l~V 179 (245)
+|+++|+++|++
T Consensus 213 ~El~~Ie~~f~v 224 (224)
T 1g62_A 213 PELSVIESIFRL 224 (224)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCc
Confidence 999999999986
No 8
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=99.95 E-value=1.5e-28 Score=219.53 Aligned_cols=127 Identities=14% Similarity=0.261 Sum_probs=122.9
Q ss_pred ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhC--CceEEEEecCceeeeeEEEEcCCeEe----------------
Q psy3572 99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGL---------------- 160 (245)
Q Consensus 99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~L---------------- 160 (245)
++.+.+|+|+.+||+|||+||+.+++..+.+++.|+ +|+++++|+|+++||++++||+||+|
T Consensus 11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 90 (248)
T 4a18_J 11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS 90 (248)
T ss_dssp TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence 678999999999999999999999999999999999 99999999999999999999888888
Q ss_pred -----------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCC
Q psy3572 161 -----------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTT 211 (245)
Q Consensus 161 -----------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT 211 (245)
|||+++++..+.|++.|+|++.++|+ +|++.||+..++||+|++|||.++
T Consensus 91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tI-ags~lVGs~~v~Nn~G~LVhp~~s 169 (248)
T 4a18_J 91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTI-ANNVLVGTYCVINNRGGLVHPLAS 169 (248)
T ss_dssp SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCB-TTBSCHHHHEEECSSCEEECTTCC
T ss_pred CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEc-CCcceeEEEEEEeCCeEEECCCCC
Confidence 88999999889999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q psy3572 212 STEISVIESVFKLNE 226 (245)
Q Consensus 212 ~~Ei~~Ie~~l~v~~ 226 (245)
++|+++|+++|+++.
T Consensus 170 ~eEl~~L~~~l~V~v 184 (248)
T 4a18_J 170 VEELDELANLLQIPL 184 (248)
T ss_dssp HHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHhCCce
Confidence 999999999999996
No 9
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=71.53 E-value=55 Score=29.07 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=90.3
Q ss_pred CeEEeCCCCC---HHHHHHHHhhCCC-CceEEEecc---cCCcceeEEEEeCceEE-EcCCCChhHHHHHHhhh-CCceE
Q psy3572 68 HGLIVPNATT---DTELQHIRNSLPD-SVKLQRVEE---RLSALGNVIACNDYVAL-VHPDLDRETEEILADTL-NVEVF 138 (245)
Q Consensus 68 nGllvp~~~~---d~El~~l~~~l~~-~v~v~~l~~---~~~alGn~i~~ND~~al-v~p~l~~~~~e~I~d~L-gVeV~ 138 (245)
+|+++.++.. ..|...++..+.. +.++..+++ .+.. |.++..++.+.+ ++.--+++.++.+++.| +.+|+
T Consensus 109 ~~vii~~m~~~~Rr~E~~~~~~~l~~~g~~i~~~~~~~~~lEG-GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~~~Vv 187 (308)
T 3i4a_A 109 ETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDG-GDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVS 187 (308)
T ss_dssp TEEEECCCSSGGGGGGHHHHHHHHHTTTCEEEECCCTTCCCCG-GGEEECSSCEEEEESSSCCHHHHHHHHHHTTTSCEE
T ss_pred CEEEEeCCCchhhhhhHHHHHHHHHHCCCeEEEccCCCCcCcc-ceEEEECCEEEEEEchhcCHHHHHHHHHHcCCCeEE
Confidence 4688877743 3455555544432 467766643 4455 999999877443 36667788899999999 87777
Q ss_pred EEEe-cCceeeeeEEEEcCCeEeeCCCCC-HHHHHHHhhh--cCcceeeeeeecCccceeeEEEEc--Cc-eEEEcCCC-
Q psy3572 139 RQTV-SSNVLVGSYCALTNQGGLVHPHTS-PQDQDELSSL--LQIPLVAGTVNRGSEVIGAGMVVN--DW-AAFCGFDT- 210 (245)
Q Consensus 139 ~~tI-ag~~lVGs~~v~Nn~G~LV~p~~s-~eEl~~l~~~--l~V~v~~gTvN~G~~~VGsgivaN--d~-G~lvg~~t- 210 (245)
...+ +-..|=..++....+-++++|+.. ++.++.+++. .+.+++.-+-..+. +.+.+| ++ +.++.+..
T Consensus 188 ~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~~~~~iI~vpe~~a~----N~L~ln~~~~~~vvi~~~~~ 263 (308)
T 3i4a_A 188 TVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAA----NCIYLNIPNKGHVLLHRTPE 263 (308)
T ss_dssp EEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCSSCCEEEEESSGGGG----CCEEEEETTTEEEEEEECTT
T ss_pred EEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhccCCCEEEECChHHhC----CEEEEccCCCCCEEEecCcc
Confidence 6554 345666778887888888887643 4456677653 24444443333333 444565 33 68887632
Q ss_pred CH-HHHHHHHH
Q psy3572 211 TS-TEISVIES 220 (245)
Q Consensus 211 T~-~Ei~~Ie~ 220 (245)
.. ...+.+++
T Consensus 264 ~~p~~~~~l~~ 274 (308)
T 3i4a_A 264 EYPESAKVYEK 274 (308)
T ss_dssp TCHHHHHHHHH
T ss_pred cCcccHHHHHh
Confidence 22 23344544
No 10
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=59.62 E-value=48 Score=29.45 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=75.5
Q ss_pred eeEEEecCcEEEE--ecCCChhHHHHHHHHh-cCCCceEEEeec-cceeeeeEEe-ecCCeEEeCCCCCHHHHHHHHhhC
Q psy3572 14 GVFSKLTNSYCLV--AIGGSENFYSVFEAEL-AETIPVIHASLA-GCRIIGRMSV-GNRHGLIVPNATTDTELQHIRNSL 88 (245)
Q Consensus 14 Gvy~~~t~~~~lv--p~~~~~~~~~~i~e~L-~~~v~vv~t~I~-gs~lvG~l~~-gN~nGllvp~~~~d~El~~l~~~l 88 (245)
|=++...+. +++ ..-.++.-.+.+++.| + .+|+...+. -.-|=..|+. +...-++-|+....+.++.|++..
T Consensus 152 GDvl~~g~~-v~vG~s~RTn~~gi~~l~~~l~~--~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~ 228 (308)
T 3i4a_A 152 GDVLFTGRE-FFVGLSKRTNQRGAEILADTFKD--YAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMS 228 (308)
T ss_dssp GGEEECSSC-EEEEESSSCCHHHHHHHHHHTTT--SCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTC
T ss_pred ceEEEECCE-EEEEEchhcCHHHHHHHHHHcCC--CeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhc
Confidence 444555444 555 4446777888999999 5 666665543 3345556666 555555567767777888888643
Q ss_pred CCCceEEEecccCCcceeEEEEe----CceEEEc-CCCChhHHHHHHhhhCCceEEEEe
Q psy3572 89 PDSVKLQRVEERLSALGNVIACN----DYVALVH-PDLDRETEEILADTLNVEVFRQTV 142 (245)
Q Consensus 89 ~~~v~v~~l~~~~~alGn~i~~N----D~~alv~-p~l~~~~~e~I~d~LgVeV~~~tI 142 (245)
..+.++-.+++. ..+|++.+| .++.+++ +.-.+...+.+++.-|.+++...+
T Consensus 229 ~~~~~iI~vpe~--~a~N~L~ln~~~~~~vvi~~~~~~~p~~~~~l~~l~g~~vi~vd~ 285 (308)
T 3i4a_A 229 DHRYDKLTVPDD--IAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSM 285 (308)
T ss_dssp SSCCEEEEESSG--GGGCCEEEEETTTEEEEEEECTTTCHHHHHHHHHCTTEEEEEECC
T ss_pred cCCCEEEECChH--HhCCEEEEccCCCCCEEEecCcccCcccHHHHHhcCCCEEEEecH
Confidence 324455555543 677888888 2445544 334455666666432777776544
No 11
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=49.20 E-value=49 Score=30.83 Aligned_cols=107 Identities=9% Similarity=0.103 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHhhCCCCceEEEecccCCc---c-eeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCce--
Q psy3572 73 PNATTDTELQHIRNSLPDSVKLQRVEERLSA---L-GNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNV-- 146 (245)
Q Consensus 73 p~~~~d~El~~l~~~l~~~v~v~~l~~~~~a---l-Gn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~-- 146 (245)
+..++.+.++.|++.|+.+.+|..++....+ + ..+..+.+..++++|+..++..+.+++. +.+++..+.....
T Consensus 270 s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~-~~~iI~~p~~~~~~~ 348 (423)
T 1jdw_A 270 SQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA-GWTIITPPTPIIPDD 348 (423)
T ss_dssp CSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT-TCEEECCCCCCCCTT
T ss_pred cccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC-CCEEEECCCchhccc
Confidence 3556788999999988644566666543222 2 3466788888889988877777777764 6777776543321
Q ss_pred --------eeee-EEEEcCCeEeeCCCCCHHHHHHHhhhcCccee
Q psy3572 147 --------LVGS-YCALTNQGGLVHPHTSPQDQDELSSLLQIPLV 182 (245)
Q Consensus 147 --------lVGs-~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~ 182 (245)
..|+ +...|. |.++.|.-..+-.+.|++. |.+++
T Consensus 349 ~~~~~s~~~~~~N~L~inp-g~VI~~~~~~~~~~~L~~~-G~~Vi 391 (423)
T 1jdw_A 349 HPLWMSSKWLSMNVLMLDE-KRVMVDANEVPIQKMFEKL-GITTI 391 (423)
T ss_dssp SCCSSSCGGGGGCCEEEET-TEEEEETTCHHHHHHHHHT-TCEEE
T ss_pred cccccccccceeeEEEECC-CEEEEeCCCHHHHHHHHHC-CCEEE
Confidence 0122 233344 4444555667777888876 76654
No 12
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=36.83 E-value=99 Score=26.17 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=64.1
Q ss_pred cCCChhHHHHHHHHh---cCCCceEEEeecc-ceeeeeEE-eecCCeEEeCCCCCHHHHHHHHhhCCCCceEEEecccCC
Q psy3572 28 IGGSENFYSVFEAEL---AETIPVIHASLAG-CRIIGRMS-VGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLS 102 (245)
Q Consensus 28 ~~~~~~~~~~i~e~L---~~~v~vv~t~I~g-s~lvG~l~-~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~ 102 (245)
.-.+++..+.+++.| + .+|+...+.+ .-+=..++ ++...-++.|....+.+ ++ +.++-.++..-.
T Consensus 132 ~Rt~~~~~~~l~~~l~~~g--~~vi~~~~~~~~HlD~~~~~v~~~~~~~~~~~~~~~~---~~-----~~~ii~~~~~e~ 201 (255)
T 1h70_A 132 ARTNAEGARQMIAILEKHG--LSGSVVRLEKVLHLKTGLAYLEHNNLLAAGEFVSKPE---FQ-----DFNIIEIPEEES 201 (255)
T ss_dssp SSSCHHHHHHHHHHHHHTT--CEEEEEECSSSSSGGGSEEECSTTEEEECGGGTTCGG---GT-----TSEEEECCGGGG
T ss_pred cCCcHHHHHHHHHHHhhCC--CEEEEEECCCCcchhheeeecCCCEEEEECCcCCHhH---hC-----ceEEEECCCccc
Confidence 335677888999999 6 7877776653 23334455 34444444454443332 33 356666664434
Q ss_pred cceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe
Q psy3572 103 ALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV 142 (245)
Q Consensus 103 alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI 142 (245)
.-.|++..| ...+ -|...+.+.+.+++. |.+|+...+
T Consensus 202 ~~~N~l~i~-~~Vi-~~~~~~~~~~~l~~~-g~~vi~v~~ 238 (255)
T 1h70_A 202 YAANCIWVN-ERVI-MPAGYPRTREKIARL-GYRVIEVDT 238 (255)
T ss_dssp GGGCCEEET-TEEE-EESSCHHHHHHHHTT-TCEEEEECC
T ss_pred ccccEEEEC-CEEE-eCCCCHHHHHHHHHC-CCeEEEech
Confidence 667888888 4444 455678888888876 999888654
No 13
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=36.23 E-value=1.7e+02 Score=27.11 Aligned_cols=117 Identities=7% Similarity=0.034 Sum_probs=71.9
Q ss_pred CcEEEEecC--CChhHHHHHHHHhcCCCceEEEeecc---ceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceEE
Q psy3572 21 NSYCLVAIG--GSENFYSVFEAELAETIPVIHASLAG---CRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQ 95 (245)
Q Consensus 21 ~~~~lvp~~--~~~~~~~~i~e~L~~~v~vv~t~I~g---s~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~ 95 (245)
++.+++..+ .++.-.+.+++.|++..+|+.....+ .-+=..++.-..+-+++.....++.++.|++. +.++-
T Consensus 262 G~~llvg~s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~---~~~iI 338 (423)
T 1jdw_A 262 GRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA---GWTII 338 (423)
T ss_dssp TTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT---TCEEE
T ss_pred CCEEEEEecccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC---CCEEE
Confidence 345555433 35667778999994225676666543 22223444444454555444445667788764 45555
Q ss_pred EecccCCc------------ceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe
Q psy3572 96 RVEERLSA------------LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV 142 (245)
Q Consensus 96 ~l~~~~~a------------lGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI 142 (245)
.++..... -.|++..|....|+|. -.+.+.+.+++. |.+|+...+
T Consensus 339 ~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI~~~-~~~~~~~~L~~~-G~~Vi~v~~ 395 (423)
T 1jdw_A 339 TPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDA-NEVPIQKMFEKL-GITTIKVNI 395 (423)
T ss_dssp CCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEET-TCHHHHHHHHHT-TCEEEEECC
T ss_pred ECCCchhccccccccccccceeeEEEECCCEEEEeC-CCHHHHHHHHHC-CCEEEEecH
Confidence 55543222 5799999866666655 468889999887 999888644
No 14
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.35 E-value=98 Score=22.59 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=36.3
Q ss_pred eEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHh
Q psy3572 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILAD 131 (245)
Q Consensus 61 ~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d 131 (245)
.+.+|| ||..+++++|+.+-...+.-..|..+.. -.+|+|.-+-.++..+.++.
T Consensus 17 ~l~V~n-----Lp~~~te~~L~~~F~~fG~V~~v~i~~~------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 17 VVHVRG-----LCESVVEADLVEALEKFGTICYVMMMPF------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp EEEEES-----CCSSCCHHHHHHHHTTTSCEEEEEEETT------------TTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEECC------------CCEEEEEECCHHHHHHHHHH
Confidence 456677 8999999999988654332233333332 24799988777777777764
No 15
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.54 E-value=84 Score=23.18 Aligned_cols=50 Identities=10% Similarity=0.252 Sum_probs=38.0
Q ss_pred EEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHH-HHhhhcCcceee-eeee
Q psy3572 116 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLVA-GTVN 187 (245)
Q Consensus 116 lv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~-~l~~~l~V~v~~-gTvN 187 (245)
|..|-++++....+++. |-.-+.|+|.++..|++ .++++|+|+|.. -|.|
T Consensus 7 Ik~P~iTEKa~~~~e~~----------------------n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~ 58 (86)
T 3j21_T 7 IIRPVVTEKAISLIEKE----------------------NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLI 58 (86)
T ss_dssp EEECCCSHHHHHHHHTS----------------------CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeE
Confidence 56788888887777653 34457899999999998 678889999743 4555
No 16
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=29.60 E-value=75 Score=23.37 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=36.5
Q ss_pred EEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHH-HHhhhcCccee-eeeee
Q psy3572 116 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV-AGTVN 187 (245)
Q Consensus 116 lv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~-~l~~~l~V~v~-~gTvN 187 (245)
|..|-+++++...+++. |-.-+.|+|+++..|++ .++++|+|+|. .-|.|
T Consensus 6 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~ 57 (85)
T 1vq8_S 6 IKHPHVTEKAMNDMDFQ----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQN 57 (85)
T ss_dssp EEEECCSHHHHHHHHHS----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred eeccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeee
Confidence 45677777777766632 22458899999999998 67788999973 45555
No 17
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=27.80 E-value=63 Score=23.21 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=54.8
Q ss_pred eEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEE
Q psy3572 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQ 140 (245)
Q Consensus 61 ~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~ 140 (245)
.+.+|| +|..+++++|+.+=...+.-..+....++.+ --+|+|.-.-.+++.+.++..=|..
T Consensus 10 ~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~---- 71 (115)
T 3lqv_A 10 ILYIRN-----LPYKITAEEMYDIFGKYGPIRQIRVGNTPET---------RGTAYVVYEDIFDAKNAVDHLSGFN---- 71 (115)
T ss_dssp EEEEES-----CCTTCCHHHHHHHHHTTSCEEEEEEECSTTT---------TTCEEEEESSHHHHHHHHHHHTTCB----
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---------CcEEEEEECCHHHHHHHHHHcCCCE----
Confidence 355666 7999999999987554332233333333222 2478888777777777777554443
Q ss_pred EecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcc
Q psy3572 141 TVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180 (245)
Q Consensus 141 tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~ 180 (245)
+.|..+.=.++--...--=.++..++++++++.+-+|++
T Consensus 72 -~~g~~l~v~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 72 -VSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp -SSSCBCEEEECCHHHHTTTSCHHHHHHHHHHHHHHHCCC
T ss_pred -ECCeEEEEEEecCChhhhhhhHhHhHHHHHHHHHHhCCC
Confidence 233332222221111001124455677777777766665
No 18
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=26.46 E-value=57 Score=30.36 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=59.1
Q ss_pred HHHHHHHhhCCCCceEEEecccCC---cceeEEEEeCce--EEE----------------cCCCChhHHHHHHhhhCCce
Q psy3572 79 TELQHIRNSLPDSVKLQRVEERLS---ALGNVIACNDYV--ALV----------------HPDLDRETEEILADTLNVEV 137 (245)
Q Consensus 79 ~El~~l~~~l~~~v~v~~l~~~~~---alGn~i~~ND~~--alv----------------~p~l~~~~~e~I~d~LgVeV 137 (245)
++.+..++.|+.+|.+..++.... -.|-....|++. +.+ +-+.++...+.+.+.+|+++
T Consensus 69 ~~~~~a~~~l~~~V~~~~~~~~D~W~RD~GP~~v~~~~g~~~~vdf~FN~WGg~~~g~~~~~~~D~~v~~~~~~~~g~~~ 148 (389)
T 2jer_A 69 QQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDS 148 (389)
T ss_dssp TTHHHHHHHSCTTSEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCE
T ss_pred HHHHHHHHHccCCcEEEEcCCCCEecccccceEEecCCCCEEEEEeecccccccccccccCccchHHHHHHHHHHcCCCe
Confidence 344566666766677766664433 234344434432 222 23566778899999999998
Q ss_pred EE-EEe---cCce-eeeeEEEEcCCeEeeC----CCCCHHHH-HHHhhhcCcce
Q psy3572 138 FR-QTV---SSNV-LVGSYCALTNQGGLVH----PHTSPQDQ-DELSSLLQIPL 181 (245)
Q Consensus 138 ~~-~tI---ag~~-lVGs~~v~Nn~G~LV~----p~~s~eEl-~~l~~~l~V~v 181 (245)
++ ..+ +|+. .-|-=.+.+...+|++ |..|.+|+ ++|++.||++-
T Consensus 149 ~~~~~~vlEGGsi~~DG~GTlltTe~clLn~nRNP~lsk~eiE~~Lk~~LGv~k 202 (389)
T 2jer_A 149 YRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEK 202 (389)
T ss_dssp EEEEEEECCGGGEEECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSE
T ss_pred EecCCeEEccCcEEECCCceEEEEeeeecCCCCCCCcCHHHHHHHHHHHcCCCE
Confidence 87 332 1111 1121122222333444 45689999 69999999984
No 19
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=26.06 E-value=1.2e+02 Score=22.02 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=40.6
Q ss_pred EEeecCCeEEeCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCC
Q psy3572 62 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNV 135 (245)
Q Consensus 62 l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgV 135 (245)
+.+|| ||..+++++|+.+=...+.-..+.++.++... --+|+|.-.-.+++.+.|+..=|.
T Consensus 8 lfV~n-----Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~--------kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 8 IFIKN-----LDKSIDNKALYDTFSAFGNILSCKVVCDENGS--------KGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp EEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE--------EEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEECC-----CCCCCCHHHHHHHHhccCCEEEEEEeecCCCC--------CceEEEEECCHHHHHHHHHHcCCC
Confidence 55555 79999999999886554432445555444321 137899888888888888765443
No 20
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=25.85 E-value=55 Score=24.58 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=25.9
Q ss_pred cCCeEeeCCCCCHHHHH-HHhhhcCcce-eeeeee
Q psy3572 155 TNQGGLVHPHTSPQDQD-ELSSLLQIPL-VAGTVN 187 (245)
Q Consensus 155 Nn~G~LV~p~~s~eEl~-~l~~~l~V~v-~~gTvN 187 (245)
|+.-+.|+|+++..|++ .++++|+|+| -.-|+|
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~ 57 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMN 57 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEE
Confidence 45678899999999998 6778899997 334444
No 21
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.41 E-value=85 Score=23.43 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=35.7
Q ss_pred EEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHH-HHhhhcCccee-eeeee
Q psy3572 116 LVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPLV-AGTVN 187 (245)
Q Consensus 116 lv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~-~l~~~l~V~v~-~gTvN 187 (245)
|..|-+++++...+++. |-.-+.|+|.++..|++ .++.+|+|+|. .-|+|
T Consensus 11 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~ 62 (93)
T 3r8s_T 11 LRAPHVSEKASTAMEKS----------------------NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLV 62 (93)
T ss_dssp EEEECCSHHHHHHHHTT----------------------SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEE
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEE
Confidence 45677777776666551 33457899999999998 67888999973 34444
No 22
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.72 E-value=1.5e+02 Score=22.45 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=34.4
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHh
Q psy3572 72 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILAD 131 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d 131 (245)
||..++++||+.+-...+.-..|..+.+| -+|+|--+-.+++.+.|+.
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~k------------G~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKGK------------NQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGGG------------TEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCCC------------CEEEEEECCHHHHHHHHHH
Confidence 78999999999886544433556555543 4789988777777777763
No 23
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.77 E-value=1.1e+02 Score=21.71 Aligned_cols=48 Identities=8% Similarity=0.013 Sum_probs=31.7
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhh
Q psy3572 72 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADT 132 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~ 132 (245)
||..+++++|+.+-.....-..+.++.+ -+|+|--.-.+++.+.|+..
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~-------------g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD-------------GTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT-------------TEEEEEESSHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC-------------CEEEEEECCHHHHHHHHHHH
Confidence 6899999999988554332123333322 68888877777777777753
No 24
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.73 E-value=1.4e+02 Score=20.32 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=31.4
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhh
Q psy3572 72 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADT 132 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~ 132 (245)
||..+++++|+.+=+....-..+..... +|+|.-.-.++..+.++..
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~~--------------~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVKD--------------YAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECSS--------------EEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEECC--------------EEEEEECCHHHHHHHHHHh
Confidence 5899999999988654432234444311 8899887767777777643
No 25
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=21.84 E-value=2.4e+02 Score=20.76 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=53.6
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceee---
Q psy3572 72 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLV--- 148 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lV--- 148 (245)
||..+++++|+.+=+..+.-..+..+.++.+.. +--+|+|.-.-.+++.+.++. + ..+.|..+-
T Consensus 11 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~------~~g~afV~f~~~~~a~~A~~~--~-----~~~~g~~i~v~~ 77 (167)
T 2cjk_A 11 LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR------SRGFGFLSFEKPSSVDEVVKT--Q-----HILDGKVIDPKR 77 (167)
T ss_dssp CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS------CCSCEEEEESSTHHHHHHHHS--C-----CEETTEECCCEE
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC------ccceEEEEEccHHHHHHHHhc--c-----cccCCeEccccc
Confidence 699999999998865443223344343332211 224788888878888888875 1 122332221
Q ss_pred ----------eeEEEEcCCeEeeCCCCCHHHHHHHhhhcC
Q psy3572 149 ----------GSYCALTNQGGLVHPHTSPQDQDELSSLLQ 178 (245)
Q Consensus 149 ----------Gs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~ 178 (245)
..+.++| +++.+++++++.+=+-+|
T Consensus 78 ~~~~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G 112 (167)
T 2cjk_A 78 AIPRDEQDKTGKIFVGG-----IGPDVRPKEFEEFFSQWG 112 (167)
T ss_dssp CCCHHHHHHCEEEEEEE-----ECTTCCHHHHHHHHHTTS
T ss_pred ccchhhccCCCeEEECC-----CCCCCCHHHHHHHHHhCc
Confidence 1233332 789999999987766554
No 26
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.23 E-value=1.9e+02 Score=23.73 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=41.2
Q ss_pred EEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHH-HHhhhcCcce-eeeeee
Q psy3572 115 ALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQD-ELSSLLQIPL-VAGTVN 187 (245)
Q Consensus 115 alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~-~l~~~l~V~v-~~gTvN 187 (245)
.|..|-++++....+++. |-.-+.|+++++..|++ .++++|+|.| -.-|+|
T Consensus 76 iIk~PliTEKa~~~~E~~----------------------n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~ 128 (156)
T 2zkr_s 76 IIKFPLTTESAMKKIEDN----------------------NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLI 128 (156)
T ss_dssp CEEEECCSHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred hHhcccccHHHHHHHHhC----------------------CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeE
Confidence 567899999999999882 33568999999999987 6788999998 445665
No 27
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.94 E-value=1.2e+02 Score=22.72 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=35.0
Q ss_pred eCCCCCHHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhh
Q psy3572 72 VPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTL 133 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~L 133 (245)
||..+++++|+.+-...+.-.++.++.+| -+|+|--+-.++..+.|+..-
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~~v~i~~~k------------GfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVTNLLMLKGK------------NQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEEEEEEETTT------------TEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcCC------------CEEEEEECCHHHHHHHHHHhc
Confidence 78999999999885443333455555442 478998887778888887543
No 28
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=20.82 E-value=2.1e+02 Score=26.49 Aligned_cols=99 Identities=17% Similarity=0.276 Sum_probs=61.8
Q ss_pred HHHHHHHhhCCCCceEEEecccCCc---ceeEEEEeCc----------eEEE----------------cCCCChhHHHHH
Q psy3572 79 TELQHIRNSLPDSVKLQRVEERLSA---LGNVIACNDY----------VALV----------------HPDLDRETEEIL 129 (245)
Q Consensus 79 ~El~~l~~~l~~~v~v~~l~~~~~a---lGn~i~~ND~----------~alv----------------~p~l~~~~~e~I 129 (245)
++.+..+..|+..|.+..++...+= .|=..+.|++ .+.+ +-+.+...-+.|
T Consensus 67 ~~~~~a~~~l~~~v~~~~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~v 146 (383)
T 3h7c_X 67 AQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKI 146 (383)
T ss_dssp GGHHHHHHHSCTTSEEEECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHHH
Confidence 3456667777777888777655432 3444444543 2333 335667778889
Q ss_pred HhhhCCceEEEEecCceeeeeEEEEcCCeEe-------e----CCCCCHHHHH-HHhhhcCcc
Q psy3572 130 ADTLNVEVFRQTVSSNVLVGSYCALTNQGGL-------V----HPHTSPQDQD-ELSSLLQIP 180 (245)
Q Consensus 130 ~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L-------V----~p~~s~eEl~-~l~~~l~V~ 180 (245)
.+.++++.++..+- +=|=..-.|-.|-| + +|..|.+|++ +|++.||++
T Consensus 147 ~~~~g~~~~~~~lV---lEGGsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~ 206 (383)
T 3h7c_X 147 LALERIPRFQHSMI---LEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQ 206 (383)
T ss_dssp HHHHTCCEEEEEEE---CCGGGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHhCCCcccCCee---ecCCcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCc
Confidence 99999998875431 11111122444433 3 6889999998 599999997
Done!