RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3572
(245 letters)
>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like
protein; Provisional.
Length = 247
Score = 441 bits (1135), Expect = e-159
Identities = 181/247 (73%), Positives = 212/247 (85%), Gaps = 2/247 (0%)
Query: 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
MA+R QFEN+N++GVFSKLTNSYCLVA+GGSENFYSVFE+ELA IPV+H ++ G R+IG
Sbjct: 1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIG 60
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
R++VGNR GL+VP+ TD ELQH+RNSLPDSVK+QRVEERLSALGN IACNDYVAL+HPD
Sbjct: 61 RLTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPD 120
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
LDRETEEI+ D L VEVFR T++ NVLVG+YC TNQGGLVHP TS Q+ DELSSLLQ+P
Sbjct: 121 LDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQ--PSAITTSMRA 238
LVAGTVNRGS+VIGAG+VVNDWAAFCG DTT+TEISVIE +FKL A +R+
Sbjct: 181 LVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS 240
Query: 239 SLIDSIA 245
SLID++A
Sbjct: 241 SLIDTLA 247
>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large
ribosomal subunit and prevents the two subunits from
associating during translation initiation. IF6 comprises
a family of translation factors that includes both
eukaryotic (eIF6) and archeal (aIF6) members. All
members of this family have a conserved pentameric fold
referred to as a beta/alpha propeller. The eukaryotic
IF6 members have a moderately conserved C-terminal
extension which is not required for ribosomal binding,
and may have an alternative function.
Length = 220
Score = 343 bits (882), Expect = e-121
Identities = 125/222 (56%), Positives = 160/222 (72%), Gaps = 2/222 (0%)
Query: 2 AVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGR 61
A+R+ FE + +GVF+K TNSYCLV GG ENF S FE EL +PV+ ++ G R++G
Sbjct: 1 AIRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGS 58
Query: 62 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 121
++VGN +GL++P+ TTD ELQHIRNSLPD V + RV+E LSALGNVI CND+ ALVHPDL
Sbjct: 59 LTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDL 118
Query: 122 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 181
+E EEI+ D L VEVFR T++ VGS LTN+GGLVHP TS ++ +ELS L ++P+
Sbjct: 119 SKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPV 178
Query: 182 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK 223
VAGTVN GS+ +GAG+V N A G DTT E+S IE
Sbjct: 179 VAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220
>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6.
Length = 200
Score = 318 bits (816), Expect = e-111
Identities = 129/201 (64%), Positives = 161/201 (80%), Gaps = 2/201 (0%)
Query: 4 RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMS 63
R+ FE + +GV+ KLTNSYCLV +GG ENFYSV E L +PV+H S+ G R+IGR++
Sbjct: 2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLT 59
Query: 64 VGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDR 123
VGN +GL+VPN TTD ELQH+RNSLPDSV++QRVEERL+ALGN+I CND+ AL PDL +
Sbjct: 60 VGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSK 119
Query: 124 ETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVA 183
ETEEI++D L VEVFR T++ N+ VGSYC +TN+GGLVHP TS ++ ELS LL +PLVA
Sbjct: 120 ETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLVA 179
Query: 184 GTVNRGSEVIGAGMVVNDWAA 204
GTVN GSEV+GAG+V ND A
Sbjct: 180 GTVNFGSEVVGAGLVANDNGA 200
Score = 41.1 bits (97), Expect = 1e-04
Identities = 25/118 (21%), Positives = 44/118 (37%)
Query: 104 LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 163
+G I + LV D ++ + L V V ++ + L+G + G LV
Sbjct: 11 IGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPN 70
Query: 164 HTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 221
T+ Q+ L + L + V +G ++ ND A D + +I V
Sbjct: 71 TTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDV 128
>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family. This family includes eukaryotic
translation initiation factor 6 as well as presumed
archaebacterial homologues.
Length = 197
Score = 303 bits (778), Expect = e-105
Identities = 108/201 (53%), Positives = 143/201 (71%), Gaps = 4/201 (1%)
Query: 4 RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMS 63
R+ E + +GVF++ TN Y LV G SE FYSV E EL + V+ S+AG R++G ++
Sbjct: 1 RLSIEGSPNIGVFARATNDYALVPPGLSEEFYSVIEEELG--VEVVETSIAGSRLVGSLT 58
Query: 64 VGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDR 123
VGN +GL+VP+ TD EL H++ SL V ++R+EE+L+ALGNVI ND ALVHPDL R
Sbjct: 59 VGNSNGLLVPSTATDEELDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDLSR 116
Query: 124 ETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVA 183
ETEEI+AD L VEVFR T++ N VGS TN+GGLVHP + ++ +ELS LL +P+ A
Sbjct: 117 ETEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPVDA 176
Query: 184 GTVNRGSEVIGAGMVVNDWAA 204
GTVNRGS ++GAG+V ND A
Sbjct: 177 GTVNRGSPLVGAGLVANDKGA 197
>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6)
[Translation, ribosomal structure and biogenesis].
Length = 222
Score = 283 bits (727), Expect = 2e-97
Identities = 96/224 (42%), Positives = 134/224 (59%), Gaps = 4/224 (1%)
Query: 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
M R+ FE + +GV++K T SY LV G E F V L +PV+ ++AG R++G
Sbjct: 2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVG 59
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
++ GN +GL+VP D EL+ ++N V++ + +L+ALGN+I ND ALVHPD
Sbjct: 60 ALTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPD 117
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
L E E+ + D L VEV R T++ VGS LTN+GGLVHP TS ++ +ELS L +P
Sbjct: 118 LSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVP 177
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
+ GTVN GS +GAG+V N A G DTT E++ IE
Sbjct: 178 VDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221
>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative.
This model finds translation initiation factor eIF-6 of
eukaryotes, which is a ribosome dissociation factor. It
also finds a set of apparent archaeal orthologs,
slightly shorter proteins not yet shown to act as
initiation factors; these probably should be designated
as translation initiation factor aIF-6, putative
[Protein synthesis, Translation factors].
Length = 216
Score = 254 bits (651), Expect = 3e-86
Identities = 124/222 (55%), Positives = 160/222 (72%), Gaps = 7/222 (3%)
Query: 4 RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMS 63
R QF N E+GV++K+T Y LV + GSENFYS FE EL +PV+H ++AG ++G ++
Sbjct: 1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGALT 58
Query: 64 VGNRHGLIVPNATTDTELQHIRNSLPDS-VKLQRVEERLSALGNVIACNDYVALVHPDLD 122
VGN GL+V D L H +SLPDS VK+QR+EERL+ALGN+I CNDY AL P+LD
Sbjct: 59 VGNSRGLLVS----DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPELD 114
Query: 123 RETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLV 182
R+TEE+++D L VEVFR T++ + VGSY +TN+GGLVHP TS Q+Q+ELSSLL + LV
Sbjct: 115 RDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELV 174
Query: 183 AGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
AGTVNRG+ V+GA MV N A G DTT E+S+IE L
Sbjct: 175 AGTVNRGTTVVGACMVANSKGAVVGLDTTGPELSIIEEALGL 216
>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6;
Provisional.
Length = 222
Score = 191 bits (488), Expect = 3e-61
Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 4/226 (1%)
Query: 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
M R+ + +GV+++ T+ Y LV E E L + V+ ++AG ++G
Sbjct: 1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVG 58
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
++ GN +G++VP+ D EL+ ++ +L + ++ + +L+ALGN+I ND ALVHP+
Sbjct: 59 SLAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPE 116
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
L E +++ DTL VEV R T++ VGS +TN+GGLVHP + ++ L L ++
Sbjct: 117 LSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVE 176
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 226
+ GTVN GS ++G+G+V N A G DTT E+ IE E
Sbjct: 177 VDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222
>gnl|CDD|216255 pfam01031, Dynamin_M, Dynamin central region. This region lies
between the GTPase domain, see pfam00350, and the
pleckstrin homology (PH) domain, see pfam00169.
Length = 296
Score = 33.3 bits (77), Expect = 0.096
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 81 LQHIRNSLPD-----SVKLQRVEERLSALGNVIACND 112
+ HIR SLPD + KLQ E+ L G+ +
Sbjct: 71 VNHIRKSLPDLKSQINKKLQETEKELERYGDDPPEDP 107
>gnl|CDD|237859 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional.
Length = 1000
Score = 31.5 bits (72), Expect = 0.43
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 93 KLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTL 133
L +++ + I +Y+ LV P+ R+ ILA+ L
Sbjct: 412 HLSALDQDGAIEIREINGVEYLFLVRPEPGRDAAAILANEL 452
>gnl|CDD|233997 TIGR02754, sod_Ni_protease, nickel-type superoxide dismutase
maturation protease. Members of this protein family
are apparent proteases encoded adjacent to the genes
for a nickel-type superoxide dismutase. This family
belongs to the same larger family (see pfam00717) as
signal peptidase I, an unusual serine protease
suggested to have a Ser/Lys catalytic dyad [Cellular
processes, Detoxification, Protein fate, Protein
modification and repair].
Length = 90
Score = 29.3 bits (66), Expect = 0.57
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 41 ELAETIPVIHASLAGCRIIGRMSVGNRHGLIV----PNATTDTEL 81
+ + V H II R++ + +GL + P A+TD+
Sbjct: 31 PIGNVVVVRHPLQPYGLIIKRLAAVDDNGLFLLGDNPKASTDSRQ 75
>gnl|CDD|217320 pfam03016, Exostosin, Exostosin family. The EXT family is a family
of tumour suppressor genes. Mutations of EXT1 on 8q24.1,
EXT2 on 11p11-13, and EXT3 on 19p have been associated
with the autosomal dominant disorder known as hereditary
multiple exostoses (HME). This is the most common known
skeletal dysplasia. The chromosomal locations of other
EXT genes suggest association with other forms of
neoplasia. EXT1 and EXT2 have both been shown to encode
a heparan sulphate polymerase with both D-glucuronyl
(GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC)
transferase activities. The nature of the defect in
heparan sulphate biosynthesis in HME is unclear.
Length = 292
Score = 29.7 bits (67), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 23 YCLVAIGGSENFYSVFEAELAETIPVI 49
+CLV G + +F+A A IPVI
Sbjct: 229 FCLVPPGDTPTSPRLFDALRAGCIPVI 255
>gnl|CDD|131102 TIGR02047, CadR-PbrR, Cd(II)/Pb(II)-responsive transcriptional
regulator. This model represents the cadmium(II) and/or
lead(II) responsive transcriptional activator of the
proteobacterial metal efflux system. This protein is a
member of the MerR family of transcriptional activators
(pfam00376) and contains a distinctive pattern of
cysteine residues in its metal binding loop,
Cys-X(6-9)-Cys, as well as a conserved and critical
cysteine at the N-terminal end of the dimerization
helix.
Length = 127
Score = 27.8 bits (62), Expect = 3.2
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 31 SENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIV----P-------NATTDT 79
++N Y V+ E + I CR + MS+ L+ P NA D
Sbjct: 32 TDNNYRVYTVGHVERLAFI----RNCRTLD-MSLAEIRQLLRYQDKPEKSCSDVNALLDE 86
Query: 80 ELQHIRNSLPDSVKLQRVEERLSALGNVIACND 112
+ H+R + +KLQ + E+L L CN
Sbjct: 87 HISHVRARI---IKLQALIEQLVDLRG--RCNG 114
>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T;
Provisional.
Length = 370
Score = 28.0 bits (63), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 65 GNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEER-LSAL 104
G+ L+V A D ++ H+R L D ++ +++R L AL
Sbjct: 112 GDHLFLVVNAACKDADIAHLREHLSDECEVNPLDDRALLAL 152
>gnl|CDD|222831 PHA01747, PHA01747, putative ATP-dependent protease.
Length = 425
Score = 28.3 bits (63), Expect = 4.7
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 58 IIGRMSVGNRHGLIVPNATTDTELQHIRNSLP-------DSVKLQRVEERLSALGNVIAC 110
I +S G + + A T+++ I +P DS L + + + N +
Sbjct: 262 INSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTP-NYIKNYLVS 320
Query: 111 ND-YVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSY 151
+ + +L LDR I+ + +S VL +
Sbjct: 321 YELFQSLTKAILDR--IAIIIVNEKKITYDDIISGRVLYPTI 360
>gnl|CDD|236024 PRK07475, PRK07475, hypothetical protein; Provisional.
Length = 245
Score = 27.6 bits (62), Expect = 5.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 173 LSSLLQIPLVAGTVNRGSEV 192
SSLLQ+PL+ + G +V
Sbjct: 106 TSSLLQVPLIQALLPAGQKV 125
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 27.9 bits (63), Expect = 5.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 179 IPLVAGTVNRGSEVIGAGMV 198
P+VAG + + +GAG+V
Sbjct: 230 TPVVAGGADAAAAALGAGVV 249
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 27.4 bits (62), Expect = 8.1
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 14/74 (18%)
Query: 60 GRMSVGN-------RHGLIVPNATTDTELQHIRN-------SLPDSVKLQRVEERLSALG 105
RM++ N + G+ P+ T L+ S D+ + E LS L
Sbjct: 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLE 267
Query: 106 NVIACNDYVALVHP 119
+A V P
Sbjct: 268 PQVAAPHLPDNVKP 281
>gnl|CDD|232817 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide
synthase. Alternate name: SAICAR synthetase purine de
novo biosynthesis. E.coli example noted as homotrimer.
Check length. Longer versions may be multifunctional
enzymes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 237
Score = 27.0 bits (60), Expect = 9.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 117 VHPD----LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTN 156
V PD D+ET E+ A L+ ++FR+T+ L+ +Y +
Sbjct: 196 VSPDTCRLWDKETYEVGAPKLDKDIFRRTLGK--LIEAYETVAR 237
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 27.3 bits (61), Expect = 9.9
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 93 KLQRVEERLSALG--NVIACNDYVALV---------HPDLDRETEEILA-----DTLNVE 136
+LQRVEE + AL N++A +Y ++ L+ E + IL + E
Sbjct: 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Query: 137 VFRQT 141
VF +
Sbjct: 1019 VFMEA 1023
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,026,305
Number of extensions: 1124939
Number of successful extensions: 986
Number of sequences better than 10.0: 1
Number of HSP's gapped: 939
Number of HSP's successfully gapped: 26
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)