RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3572
(245 letters)
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein;
ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Length = 248
Score = 322 bits (827), Expect = e-112
Identities = 157/244 (64%), Positives = 205/244 (84%)
Query: 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
MA R QFEN+N++GVF KLT++YCLV++G SENFYSVFE+EL IPVIH S+ G RI+G
Sbjct: 4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
R++ GN++GL+VPN D EL++IRNSLPD+V+++R+EE+LSALGN + NDYVAL+HPD
Sbjct: 64 RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
LDRE+EEI+ADTL VEVFR T+++NVLVG+YC + N+GGLVHP S ++ DEL++LLQIP
Sbjct: 124 LDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIP 183
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
L AGT+NRGS+VIGAG+VVNDWAAFCG DTTSTEISV+E++FKLNE + + MR
Sbjct: 184 LCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243
Query: 241 IDSI 244
+ ++
Sbjct: 244 VMNL 247
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro
closure, subdomain, structural genomics, PSI; 2.50A
{Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Length = 224
Score = 303 bits (776), Expect = e-105
Identities = 171/224 (76%), Positives = 200/224 (89%)
Query: 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct: 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
RM+ GNR GL+VP TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61 RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
+DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
LVAGTVNRGS V+GAGMVVND+ A G DTT+ E+SVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 222
Score = 286 bits (733), Expect = 8e-99
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 5/227 (2%)
Query: 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
M R+ N +GV+ +T+S L+ E F V L + V+ S++G + G
Sbjct: 1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
++VGN +G +V N D E+ + + + R+ ER +A+GN++ ND A+ P
Sbjct: 59 ALAVGNSNGFVVSNQAMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPL 115
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
L + +++ D L V+V T++ +VGS A TN+G L++P S ++ + L +
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVE 175
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEA 227
GTVN G +IGA V N G +TT E++ IE E
Sbjct: 176 ADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro
closure subdomain, structural genomics, PSI; 1.30A
{Methanocaldococcus jannaschii} SCOP: d.126.1.1
Length = 228
Score = 281 bits (720), Expect = 1e-96
Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 7/228 (3%)
Query: 1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
M +R F +GV + T L+ I ++ + L + ++ G ++G
Sbjct: 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 60
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPD---SVKLQRVEERLSALGNVIACNDYVALV 117
+SV N++GL++P D EL I+N L + + ++ ++ + +ALGN+I ND AL+
Sbjct: 61 SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 120
Query: 118 HPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLL 177
P+L ++I D+LNVEV T++ VGS +TN+G L HP + + L SL
Sbjct: 121 SPELKDFKKDI-EDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF 179
Query: 178 QIPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
++ + GT N+G+ +GA ++ N A G DTT E+ +IE L
Sbjct: 180 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 2e-09
Identities = 46/263 (17%), Positives = 83/263 (31%), Gaps = 75/263 (28%)
Query: 49 IHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEE---RLSAL- 104
IHA A ++ LI T + + +S + V E +L A+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 105 ---GNVIAC--------NDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCA 153
GN Y LV + A+TL+ E+ R T+ + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKF-----SAETLS-ELIRTTLDAEKVFTQGLN 214
Query: 154 LTNQGGLVHPHTSPQDQDELSS---------LLQI------------------PLVAGTV 186
+ L +P +P D+D L S ++Q+ + G
Sbjct: 215 I--LEWLENPSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 187 NRGSEVIGAGMV--VNDWAAF-------------CG------FDTTSTEISVIESVFKLN 225
++ A + + W +F G + TS S++E + N
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 226 EAQPS---AITTSMRASLIDSIA 245
E PS +I+ + + D +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVN 354
Score = 37.3 bits (86), Expect = 0.004
Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 81/194 (41%)
Query: 24 CLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE--- 80
L + + FE ++ + A+ AG S+G E
Sbjct: 1735 ALTLME-----KAAFEDLKSKGLIPADATFAG------HSLG--------------EYAA 1769
Query: 81 LQHIRNSLP--DSVKL--QR-------VEERLSALGNV--IACNDYVALVHPDLDRETEE 127
L + + + V++ R V N IA N V +E +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--GRVAASFSQEALQ 1827
Query: 128 ILADTLN------VEV--F----RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSS 175
+ + + VE+ + +Q V++ G AL D +++
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAA----GDLRAL----------------DTVTN 1867
Query: 176 LL------QIPLVA 183
+L +I ++
Sbjct: 1868 VLNFIKLQKIDIIE 1881
Score = 35.8 bits (82), Expect = 0.012
Identities = 36/221 (16%), Positives = 65/221 (29%), Gaps = 71/221 (32%)
Query: 22 SYCLVAIGGS----ENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIV---PN 74
S L + +++ + + L + SL + G ++ L+V P
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAG-KQVEISL----VNGA-----KN-LVVSGPPQ 384
Query: 75 ATTDTELQHIRNSL-----PDSVKLQRVE--ERLSALGNV---IAC-------NDYVALV 117
+ L + +L P + R+ ER N +A L+
Sbjct: 385 S-----LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 118 HPDLDRETEEILADTLNVEVFR-------QTVSSNV---LVGSYCALTNQGGLVH----P 163
+ DL + A + + V+ + +S ++ +V C + V
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV--DCIIRLP---VKWETTT 494
Query: 164 HTS--------PQDQDELSSLLQIPLVAGTVNRGSEVIGAG 196
P L L GT G VI AG
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHR-NKDGT---GVRVIVAG 531
Score = 33.9 bits (77), Expect = 0.058
Identities = 26/129 (20%), Positives = 39/129 (30%), Gaps = 50/129 (38%)
Query: 23 YC-LVAIGGSENFYS----VFE--AELAETIPVIHASLAGCRII----GRMS-------- 63
Y L ++ + S VF + +P + +I GR++
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 64 ------VGNRHGLIV-------PNATT---------DT--------ELQHIRNS-LPDSV 92
VG R G +V N DT +LQ I L S+
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL 1886
Query: 93 KLQRVEERL 101
L+ VE L
Sbjct: 1887 SLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 8e-05
Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 44/135 (32%)
Query: 55 GCRIIGRMSVGNRHGLIVPNATTDTELQHIRN-SLPDSVKLQRVEERLSALGNVIACNDY 113
C+I L+ TT R + D +
Sbjct: 265 SCKI-----------LL----TT-------RFKQVTDFLSAATTTH-------------- 288
Query: 114 VALVHPDL---DRETEEILADTLNVEVF---RQTVSSNVLVGSYCALTNQGGLVHPHTSP 167
++L H + E + +L L+ R+ +++N S A + + GL
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 168 Q-DQDELSSLLQIPL 181
+ D+L+++++ L
Sbjct: 349 HVNCDKLTTIIESSL 363
Score = 35.6 bits (81), Expect = 0.014
Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 45/196 (22%)
Query: 11 NEVGVFSKLTNSYCLVAIGGSENFYSV----FEAEL-AETIPVIHASLAGCRIIGRMSVG 65
++V V + Y LV E+ S+ E ++ E +H S+ I +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-- 459
Query: 66 NRHGLIVP---------------NATTDTELQHIRNSLPD----SVKLQRVEERLSALGN 106
+ LI P N + R D K++ +A G+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 107 VIAC-------NDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYC-----AL 154
++ Y+ P +R IL F + N++ Y AL
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILD-------FLPKIEENLICSKYTDLLRIAL 572
Query: 155 TNQGGLVHPHTSPQDQ 170
+ + Q Q
Sbjct: 573 MAEDEAIFEEAHKQVQ 588
Score = 32.9 bits (74), Expect = 0.094
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 18/146 (12%)
Query: 74 NATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTL 133
+ + E+ HI S R+ L + V ++ R + L +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE----EMVQKFVE-EVLRINYKFLMSPI 98
Query: 134 NVEVFRQTVSSNVLVGSYC-ALTNQGGLVHPH--TSPQDQDEL-SSLLQIPLVAGTVNRG 189
E RQ + L N + + + Q +L +LL++ + G
Sbjct: 99 KTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 190 SEVIGAG------MVVNDWAAFCGFD 209
V+G+G V + C D
Sbjct: 158 --VLGSGKTWVALDVCLSYKVQCKMD 181
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.072
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 214 EISVIESVFKL--NEAQPS-AITTSM 236
+ +++ KL +++ P+ AI +M
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 29.5 bits (66), Expect = 1.1
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 18/76 (23%)
Query: 81 LQHIRNSLPD-----SVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNV 135
HIR++LP +L +E+ + N T+ + + L
Sbjct: 286 TNHIRDTLPGLRNKLQSQLLSIEKEVEEYKN-----------FRPDKHGTDSRVDEML-- 332
Query: 136 EVFRQTVSSNVLVGSY 151
++ + ++G+
Sbjct: 333 RMYHALKEALSIIGNI 348
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 28.5 bits (63), Expect = 2.3
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 14 GVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVI 49
+ K S +A GS YS F A I
Sbjct: 375 AICQKKGYSSGHIAAXGSXRSYSGFSXNSATXNXNI 410
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Length = 199
Score = 28.1 bits (63), Expect = 2.3
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 47 PVIHASLAGCRIIGRMSVGNRHG-----LIVPNATTDTELQHIRN 86
PV+ ++ R +G + + + G L VP D +I N
Sbjct: 100 PVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVN 144
>3d53_A Inorganic pyrophosphatase; seattle structural G center for
infectious disease, ssgcid, hydrolase, magnesium
binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Length = 173
Score = 27.6 bits (62), Expect = 2.9
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 47 PVIHASLAGCRIIGRMSVGNRHG-----LIVPNATTDTELQHIRN--SLPDSVKLQ 95
PV+ S+ CR IG + + + G + VP + D HI+ L + +K +
Sbjct: 79 PVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKR 134
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein,
alpha-beta, beta-barrel, structural genomics, PSI,
protein structure initiative; 2.08A {Bacillus subtilis}
Length = 365
Score = 27.8 bits (63), Expect = 3.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 64 VGNRHGLIVPNA-TTDTELQHIRNSLPDSVKLQRVEERLSAL 104
G L+V NA D +L ++ V++ ++++ L
Sbjct: 106 KGENRYLLVINASNIDKDLAWMKEHAAGDVQIDNQSDQIALL 147
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 27.5 bits (61), Expect = 3.8
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 81 LQHIRNSLPD-----SVKLQRVEERLSALGN 106
+ I++ +P + + +E LS LG
Sbjct: 292 ERVIKSRIPGIQSLINKTVLELETELSRLGK 322
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 27.3 bits (60), Expect = 5.2
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 81 LQHIRNSLPD-----SVKLQRVEERLSALGN 106
+ HI SLP QR+ E L G
Sbjct: 307 ITHICKSLPLLENQIKETHQRITEELQKYGV 337
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 27.2 bits (61), Expect = 5.7
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 38 FEAELAETIPVIHA---SLAGCRI 58
+EA +A +P+ S+ ++
Sbjct: 141 YEATVAGGVPLFSVLDYSILPSKV 164
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia
coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A
2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A
1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Length = 175
Score = 26.5 bits (59), Expect = 6.4
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 47 PVIHASLAGCRIIGRMSVGNRHG-----LIVPNATTDTELQHIRN--SLPDSVKLQ 95
P+ S+ CR +G + + + G + VP++ E HI++ LP+ +K Q
Sbjct: 78 PLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQ 133
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase,
protein-DNA cleavage complex; HET: DNA LFX; 2.90A
{Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C*
3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Length = 268
Score = 26.7 bits (60), Expect = 6.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQR 96
+MS G V A TD EL+ +R LQR
Sbjct: 165 KMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQR 200
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 26.8 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 101 LSALGNVIACNDYVALVHPD 120
LSALG+VI AL PD
Sbjct: 327 LSALGDVIH-----ALGQPD 341
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 26.8 bits (60), Expect = 7.7
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 38 FEAELAETIPVIHA---SLAGCRI 58
+EA + +PV+ LA C I
Sbjct: 139 YEATVGGAMPVVKLAKRYLALCEI 162
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 26.4 bits (59), Expect = 9.4
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 38 FEAELAETIPVIHA---SLAGCRI 58
+EA +A +P+ S+ RI
Sbjct: 145 YEATVAGGVPLFSFIDYSVLPSRI 168
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 26.4 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Query: 101 LSALGNVIACNDYVALVHPD 120
LS LG+VI AL PD
Sbjct: 271 LSCLGDVIH-----ALGQPD 285
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,544,586
Number of extensions: 207514
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 33
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)