RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3572
         (245 letters)



>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 224

 Score =  329 bits (846), Expect = e-116
 Identities = 171/224 (76%), Positives = 200/224 (89%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           +DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           LVAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224


>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 225

 Score =  310 bits (796), Expect = e-108
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M +R  F     +GV +  T    L+ I   ++  +     L      +  ++ G  ++G
Sbjct: 1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 58

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDS---VKLQRVEERLSALGNVIACNDYVALV 117
            +SV N++GL++P    D EL  I+N L ++   + ++ ++ + +ALGN+I  ND  AL+
Sbjct: 59  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 118

Query: 118 HPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLL 177
            P+L ++ ++ + D+LNVEV   T++    VGS   +TN+G L HP     + + L SL 
Sbjct: 119 SPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF 177

Query: 178 QIPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           ++  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 178 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 225


>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 429

 Score = 27.0 bits (59), Expect = 2.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 157 QGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSE-VIGAGMVVNDWAAF 205
           QGG    HT    + +  +L  +P  +G +N  +  VIG G+VV+    F
Sbjct: 38  QGGANAGHTIYNSEGKKFALHLVP--SGILNEDTTCVIGNGVVVHLPGLF 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 825,980
Number of extensions: 34882
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)