BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy358
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W51|A Chain A, Human Mesencephalic Astrocyte-Derived Neurotrophic Factor
( Manf)
Length = 158
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 30 NCEVCVTVVEKFADRLTP-EAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGI 88
+CEVC++ + +F L + IE K+C+ +GKENR CYY+G +++AT I
Sbjct: 5 DCEVCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKI 64
Query: 89 LGELSKPLSWGMPATKICEKLKKSDSQICDLRYDKQIDFXXXXXXXXXXXXXXXXXNDWE 148
+ E+SKPL+ +P KICEKLKK DSQIC+L+YDKQID +DW
Sbjct: 65 INEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWG 124
Query: 149 EECDGCLEKGDFIKRIEELKPKYV 172
E C GC EK D+I++I EL PKY
Sbjct: 125 ETCKGCAEKSDYIRKINELMPKYA 148
>pdb|2RQY|A Chain A, Solution Structure And Dynamics Of Mouse Armet
Length = 171
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 30 NCEVCVTVVEKFADRLTP-EAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGI 88
+CEVC++ + +F L + IE+ K+C+ +GKENR CYY+G +++AT I
Sbjct: 18 DCEVCISYLGRFYQDLKDRDVTFSPATIEEELIKFCREARGKENRLCYYIGATDDAATKI 77
Query: 89 LGELSKPLSWGMPATKICEKLKKSDSQICDLRYDKQIDFXXXXXXXXXXXXXXXXXNDWE 148
+ E+SKPL+ +P KICEKLKK DSQIC+L+YDKQID +DW
Sbjct: 78 INEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWG 137
Query: 149 EECDGCLEKGDFIKRIEELKPKYV 172
E C GC EK D+I++I EL PKY
Sbjct: 138 EMCKGCAEKSDYIRKINELMPKYA 161
>pdb|2KVD|A Chain A, Mesencephalic Astrocyte-Derived Neurotrophic Factor (Manf)
Length = 160
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 30 NCEVCVTVVEKFADRLTP-EAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGI 88
+CEVC++ + +F L + IE K+C+ +GKENR CYY+G +++AT I
Sbjct: 7 DCEVCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKI 66
Query: 89 LGELSKPLSWGMPATKICEKLKKSDSQICDLRYDKQIDFXXXXXXXXXXXXXXXXXNDWE 148
+ E+SKPL+ +P KICEKLKK DSQIC+L+YDKQID +DW
Sbjct: 67 INEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWG 126
Query: 149 EECDGCLEKGDFIKRIEELKPKYV 172
E C GC EK D+I++I EL PKY
Sbjct: 127 ETCKGCAEKSDYIRKINELMPKYA 150
>pdb|2W50|A Chain A, N-Terminal Domain Of Human Conserved Dopamine Neurotrophic
Factor (Cdnf)
pdb|2W50|B Chain B, N-Terminal Domain Of Human Conserved Dopamine Neurotrophic
Factor (Cdnf)
Length = 102
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 30 NCEVCVTVVEKFADRLTPE-AKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGI 88
+CEVC + +F L IEK +C TKGKENR CYYLG +++AT I
Sbjct: 5 DCEVCKEFLNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKI 64
Query: 89 LGELSKPLSWGMPATKICEKLKKSDSQICDLRYDKQID 126
L E+++P+S MPA KICEKLKK DSQIC+L+Y+K +D
Sbjct: 65 LSEVTRPMSVHMPAMKICEKLKKLDSQICELKYEKTLD 102
>pdb|2LPN|A Chain A, Solution Structure Of N-terminal Domain Of Human Conserved
Dopamine Neurotrophic Factor (cdnf)
Length = 105
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 30 NCEVCVTVVEKFADRLTPEA-KADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGI 88
+CEVC + +F L IEK +C TKGKENR CYYLG +++AT I
Sbjct: 10 DCEVCKEFLNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKI 69
Query: 89 LGELSKPLSWGMPATKICEKLKKSDSQICDLRYDK 123
L E+++P+S MPA KICEKLKK DSQIC+L+Y+K
Sbjct: 70 LSEVTRPMSVHMPAMKICEKLKKLDSQICELKYEK 104
>pdb|2KVE|A Chain A, C-Terminal Domain Of Mesencephalic Astrocyte-Derived
Neurotrophic Factor (Manf)
Length = 65
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 120 RYDKQIDFXXXXXXXXXXXXXXXXXNDWEEECDGCLEKGDFIKRIEELKPKYV 172
+YDKQID +DW E C GC EK D+I++I EL PKY
Sbjct: 3 KYDKQIDLSTVDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELMPKYA 55
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 33 VCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKG 69
+ T +EKFA + K +T+E+E+AF K KG+
Sbjct: 228 LIATSLEKFAVEIRNLQKTETREVEEAFAKGQKGSSA 264
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 30 NCEVCVTVVEKFADRLTPEAKAD-TKEIEKAFKK 62
N V VT+VE F R P AD +KEIEK FKK
Sbjct: 194 NYGVDVTIVE-FLPRALPNEDADVSKEIEKQFKK 226
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 30 NCEVCVTVVEKFADRLTPEAKAD-TKEIEKAFKK 62
N V VT+VE F R P AD +KEIEK FKK
Sbjct: 192 NYGVDVTIVE-FLPRALPNEDADVSKEIEKQFKK 224
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 33 VCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENR 73
+ T +EKFA + K++T+E+E+ F K KG+ ++
Sbjct: 228 LIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHK 268
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 33 VCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKG 69
+ T +EK A + K++T+E+E+AF K KG+
Sbjct: 239 LIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSA 275
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 39 EKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENRFCY------------YLGGLEESAT 86
E F TP D +I++AF + + KG+++ CY L LE A
Sbjct: 26 ELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGAD 85
Query: 87 GI-LGELSKPLSWGMPATKIC 106
+ +GE+ + L G+ +I
Sbjct: 86 CVSIGEIQRALKAGIKPYRIV 106
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 39 EKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENRFCY------------YLGGLEESAT 86
E F TP D +I++AF + + KG+++ CY L LE A
Sbjct: 26 ELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGAD 85
Query: 87 GI-LGELSKPLSWGMPATKIC 106
+ +GE+ + L G+ +I
Sbjct: 86 CVSIGEIQRALKAGIKPYRIV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,883,920
Number of Sequences: 62578
Number of extensions: 173535
Number of successful extensions: 482
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 20
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)