RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy358
(176 letters)
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress,
phosphoprotein, neurotrophic factor, sialic acid,
glycoprotein, growth factor, hormone; 2.80A {Homo
sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Length = 158
Score = 176 bits (446), Expect = 3e-57
Identities = 77/148 (52%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 29 ENCEVCVTVVEKFADRLTPE-AKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATG 87
+CEVC++ + +F L IE K+C+ +GKENR CYY+G +++AT
Sbjct: 4 GDCEVCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATK 63
Query: 88 ILGELSKPLSWGMPATKICEKLKKSDSQICDLRYDKQIDFKTVDLKKLKVRDLKKILNDW 147
I+ E+SKPL+ +P KICEKLKK DSQIC+L+YDKQID TVDLKKL+V++LKKIL+DW
Sbjct: 64 IINEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDW 123
Query: 148 EEECDGCLEKGDFIKRIEELKPKYVREE 175
E C GC EK D+I++I EL PKY +
Sbjct: 124 GETCKGCAEKSDYIRKINELMPKYAPKA 151
>2w50_A ArMet-like protein 1; MANF, CDNF, saposin, secreted, ER stress,
alternative splicing, hormone, growth factor,
neurotrophic factor; 1.60A {Homo sapiens}
Length = 102
Score = 117 bits (295), Expect = 4e-35
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 30 NCEVCVTVVEKFADRLTPE-AKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGI 88
+CEVC + +F L IEK +C TKGKENR CYYLG +++AT I
Sbjct: 5 DCEVCKEFLNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKI 64
Query: 89 LGELSKPLSWGMPATKICEKLKKSDSQICDLRYDKQID 126
L E+++P+S MPA KICEKLKK DSQIC+L+Y+K +D
Sbjct: 65 LSEVTRPMSVHMPAMKICEKLKKLDSQICELKYEKTLD 102
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 31.7 bits (71), Expect = 0.043
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DLKKLKVRDLKKILNDWEEECDGCLEKGDFIKRI 164
+L K+KV+DL+ L+ + + C EK + + +
Sbjct: 75 ELMKMKVKDLRDYLSLHDISTEMCREKEELVLLV 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.051
Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 64/190 (33%)
Query: 1 MKLSSLP---------LCCMILVLNGLKNAVNCAVT-----KENCEVCVTVVEKFADRLT 46
+ LP +I +++ + T NC+ T++E + L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAES--IRDGLA---TWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 47 PEAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESA---TGILGELSKPLSWGMPAT 103
P E K F + L SA T +L + W
Sbjct: 368 PA------EYRKMFDR---------------LSVFPPSAHIPTILLSLI-----WFDVIK 401
Query: 104 KICEKL-----KKS--DSQICDLRY---DKQIDFKTVDLKKLKVRDL-KKILNDWEEECD 152
+ K S + Q + ++ K +K L + I++ +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDHYNIPK- 457
Query: 153 GCLEKGDFIK 162
+ D I
Sbjct: 458 -TFDSDDLIP 466
Score = 31.4 bits (70), Expect = 0.16
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 37/138 (26%)
Query: 54 KEIEKAFKKWCK---------------GTKGKENRFCYYLGGLEESATGILGELSKPLSW 98
+ AF CK ++ L L K L
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYL-- 311
Query: 99 GMPATKICEKLKKSDSQICDLRYDKQIDFKTVDLKKLKVRDLKKILNDWEE-ECDGCLEK 157
+ L + ++ + + + + +RD ++W+ CD +
Sbjct: 312 DCR----PQDLPR---EVL------TTNPRRLSIIAESIRDGLATWDNWKHVNCD---KL 355
Query: 158 GDFIKR-IEELKPKYVRE 174
I+ + L+P R+
Sbjct: 356 TTIIESSLNVLEPAEYRK 373
Score = 31.4 bits (70), Expect = 0.17
Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 25/114 (21%)
Query: 55 EIEKAFKKWCKGTKGKENRFCYYLG------GLEESATGILGELSKPLSWGMPATKICEK 108
I K F + F ++G E T + + + + +K
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVFLDFRF------LEQK 506
Query: 109 LKKSDSQIC----------DLR-YDKQIDFKTVDLKKLKVRDLKKILNDWEEEC 151
++ + L+ Y I + V + L EE
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEENL 559
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 29.0 bits (66), Expect = 0.77
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 131 DLKKLKVRDLKKILNDWEEECDG 153
D+K + LK+ L W++ +
Sbjct: 295 DVKPCSLLTLKENLTKWQKALEH 317
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 29.1 bits (66), Expect = 0.87
Identities = 2/23 (8%), Positives = 8/23 (34%)
Query: 131 DLKKLKVRDLKKILNDWEEECDG 153
K + ++I++ +
Sbjct: 307 RHKSWSLSQFRQIISKMDVTVGK 329
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative
splicing, disease mutation, gaucher disease,
glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens}
SCOP: a.64.1.1 PDB: 2z9a_A
Length = 91
Score = 27.7 bits (61), Expect = 0.94
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 26 VTKENCEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESA 85
V+ CEVC +V++ + + KEI AF K C + C + ++
Sbjct: 3 VSDVYCEVCEFLVKEVTKLI--DNNKTEKEILDAFDKMCSKLPKSLSEECQEV--VDTYG 58
Query: 86 TGILGELSKPLSWGMPATKICEKLK 110
+ IL L + + +C L
Sbjct: 59 SSILSILLE----EVSPELVCSMLH 79
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 28.7 bits (65), Expect = 1.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 131 DLKKLKVRDLKKILNDWEEECDG 153
+L +++D K L + +G
Sbjct: 317 NLVPFELKDWKIALAELFRYING 339
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 28.7 bits (65), Expect = 1.2
Identities = 1/23 (4%), Positives = 7/23 (30%)
Query: 131 DLKKLKVRDLKKILNDWEEECDG 153
+ D ++ ++ +
Sbjct: 293 HTIPRTLADFRQTIDKVDAIAGE 315
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 28.7 bits (65), Expect = 1.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 131 DLKKLKVRDLKKILNDWEEECDG 153
+ VR LK+ L W++ +
Sbjct: 292 ADGSIDVRRLKRTLTKWQKGLEN 314
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide
bridge, oxygen storage/transport complex; HET: HEM;
1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB:
1dw1_A* 1dw2_A* 1dw3_A*
Length = 112
Score = 27.4 bits (60), Expect = 1.6
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 37 VVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKE 71
+ A TP+ D+ +EK + C G++
Sbjct: 62 EIAPLAPSATPDRFTDSARVEKWLGRNCNSVIGRD 96
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid-binding prote binding protein; 2.40A {Homo
sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Length = 83
Score = 26.5 bits (58), Expect = 1.9
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 31 CEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGILG 90
CEVC +V++ + + KEI AF K C + C + ++ + IL
Sbjct: 7 CEVCEFLVKEVTKLI--DNNKTEKEILDAFDKMCSKLPKSLSEECQEV--VDTYGSSILS 62
Query: 91 ELSKPLSWGMPATKICEKLK 110
L + + +C L
Sbjct: 63 ILLE----EVSPELVCSMLH 78
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment,
redox-BOHR effect, paramagnetic; HET: HEC; NMR
{Methylophilus methylotrophus} SCOP: a.3.1.1 PDB:
1gu2_A* 1oae_A*
Length = 124
Score = 26.7 bits (58), Expect = 2.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 37 VVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKE 71
+ A R+ + D ++E F K C G +
Sbjct: 69 EIPPLAPRVNTKRFTDIDKVEDEFTKHCNDILGAD 103
>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA
replication, replication; HET: DNA MSE; 2.80A
{Escherichia coli} SCOP: a.236.1.1 PDB: 2haj_A*
Length = 148
Score = 26.8 bits (59), Expect = 2.6
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 132 LKKLKVRDLKKILNDWEEECDGCLEK---GDFIKRIEELKPKYVREEL 176
L+KL + D N E+ L R EEL + L
Sbjct: 83 LEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGL 130
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 27.5 bits (62), Expect = 3.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 128 KTVDLKKLKVRDLKKILNDWEEECDG 153
K +K+L V LK I N W+ E +
Sbjct: 275 KWDYVKELNVPALKTIFNKWQTELEL 300
>3h51_A Putative calcium/calmodulin dependent protein KIN association
domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas
campestris PV}
Length = 156
Score = 26.7 bits (58), Expect = 3.1
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 38 VEKFADRLTPEAKADTKEIEKAFKKWCKGTK 68
V + D+ A + +E+ F W
Sbjct: 4 VMHYTDKAALPADGEAREVAALFDTWNAALA 34
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 27.2 bits (61), Expect = 3.4
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 25 AVTKENCEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCK--GTKGK 70
A+ + T++ + L E ++ ++ K G K
Sbjct: 390 AMAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKG 437
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 26.4 bits (59), Expect = 5.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 133 KKLKVRDLKKILNDWEEECDGCLEKGDFIKRIEE 166
K L ++ +K + D ECD LE+ D + ++E
Sbjct: 152 KSLNLKHIKHFILD---ECDKMLEQLDMRRDVQE 182
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 26.7 bits (59), Expect = 5.4
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 80 GLEESATGILGELSKPLSWGMPATKICEKLKKSDSQICDLRYDKQIDFKTVDLKKLK 136
G E + G L LS + KI ++ S +L+ K ++L +K
Sbjct: 275 GWERNVQGKLAPRVVDLSSLLDPLKIADQ-----SVDLNLKLMKWRILPDLNLDIIK 326
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 26.3 bits (58), Expect = 5.7
Identities = 2/32 (6%), Positives = 7/32 (21%)
Query: 122 DKQIDFKTVDLKKLKVRDLKKILNDWEEECDG 153
D + + K ++ +
Sbjct: 191 DLLLTSSYLSDSGSTGEHTKSLVTQYLNATGN 222
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 26.0 bits (58), Expect = 7.3
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 133 KKLKVRDLKKILNDWEEECDGCLEKGDFIKRIEEL 167
K L ++ +K + D ECD LE+ D + ++E+
Sbjct: 146 KSLNLKHIKHFILD---ECDKMLEQLDMRRDVQEI 177
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 25.2 bits (55), Expect = 8.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 45 LTPEAKADTKEIEKAFKKWCK 65
L A + + KA+ K CK
Sbjct: 16 LERSAWGNIPLMRKAYLKKCK 36
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 25.8 bits (57), Expect = 9.5
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 119 LRYDKQIDFKTVDLKKLK 136
L+ K ++L +K
Sbjct: 16 LKLMKWRILPDLNLDIIK 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.416
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,720,994
Number of extensions: 154271
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 40
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)