RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy358
(176 letters)
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 44
Score = 30.2 bits (68), Expect = 0.016
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 127 FKTVDLKKLKVRDLKKILNDWEEECDGCLEKGDFI 161
F+ +L K+KV+DL+ L+ + + C EK + +
Sbjct: 1 FQREELMKMKVKDLRDYLSLHDISTEMCREKEELV 35
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 27.6 bits (61), Expect = 0.22
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 30 NCEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGIL 89
+ C+T+V+K + + + A + C+ + + C + + ++
Sbjct: 3 DYRTCLTIVQKLKKMVDKPTQR---SVSNAATRVCRTGRSRWRDVCRNF--MRRYQSRVI 57
Query: 90 GELSKPLSWGMPATKICEKLK 110
L G A +ICE L+
Sbjct: 58 QGLVA----GETAQQICEDLR 74
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 112
Score = 27.9 bits (62), Expect = 0.31
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 37 VVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKE 71
+ A TP+ D+ +EK + C G++
Sbjct: 62 EIAPLAPSATPDRFTDSARVEKWLGRNCNSVIGRD 96
>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus,
strain w3a1 [TaxId: 17]}
Length = 124
Score = 27.6 bits (61), Expect = 0.43
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 37 VVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKE 71
+ A R+ + D ++E F K C G +
Sbjct: 69 EIPPLAPRVNTKRFTDIDKVEDEFTKHCNDILGAD 103
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 27.2 bits (60), Expect = 0.63
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 132 LKKLKVRDLKKILNDWEEECDGC---LEKGDFIKRIEELKPKYVREEL 176
L+KL + D N E+ + R EEL + L
Sbjct: 70 LEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGL 117
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 44
Score = 25.4 bits (56), Expect = 0.71
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 129 TVDLKKLKVRDLKKILNDWEEECDGCLEKGDFIKRIEE 166
+ D L V LK +L G K + ++R+ +
Sbjct: 2 SADYSSLTVVQLKDLLTKRNLSVGG--LKNELVQRLIK 37
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 410
Score = 27.7 bits (61), Expect = 0.72
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 121 YDKQIDFKTVDLKKLKVRDLKKILND 146
+D + T+D+ L RD+++++
Sbjct: 37 FDYAAEVATIDVDALT-RDIEEVMTT 61
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 26.1 bits (57), Expect = 0.85
Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 8/80 (10%)
Query: 31 CEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGILG 90
C+ C+ +V + + + + K+ C C + + + +
Sbjct: 4 CQDCIQMVTDIQTAVRTN-STFVQALVEHVKEECDRLGPGMADICKNY--ISQYSEIAIQ 60
Query: 91 ELSKPLSWGMPATKICEKLK 110
+ M +IC +
Sbjct: 61 MMMH-----MQPKEICALVG 75
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein
U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 24.5 bits (54), Expect = 1.4
Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 130 VDLKKLKVRDLKKILNDWEEECDGCLEKGDFIKRIEE 166
+D+++LKV +L++ L + G K + +R++
Sbjct: 1 MDVRRLKVNELREELQRRGLDTRG--LKAELAERLQA 35
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 26.1 bits (57), Expect = 2.1
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 10 CMILVLNGLKNAVNCAVTKENCEVCVTVVEKFADRLTPEAKADTKEIEKAFKK 62
+ L LK + + N E+ + T E E+E+ K
Sbjct: 187 AIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKE------ELEEVIKD 233
>d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein
(HPr) {Staphylococcus aureus [TaxId: 1280]}
Length = 88
Score = 24.6 bits (54), Expect = 3.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 101 PATKICEKLKKSDSQICDLRYDKQIDFKTV 130
PAT + + K DS I K+++ K++
Sbjct: 18 PATMLVQTASKFDSDIQLEYNGKKVNLKSI 47
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId:
5759]}
Length = 77
Score = 24.2 bits (52), Expect = 4.5
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 31 CEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGTKGKENRFCYYLGGLEESATGILG 90
C +C ++ + LT + +++ C G C + L+ ++
Sbjct: 5 CNLCTGLINTLENLLTTKGAD---KVKDYISSLCNKASGFIATLCTKV--LDFGIDKLIQ 59
Query: 91 ELSKPLSWGMPATKICEKLK 110
+ + A IC K+
Sbjct: 60 LIED----KVDANAICAKIH 75
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 25.1 bits (54), Expect = 4.9
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 10 CMILVLNGLKNAV-NCAVTKENCEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCKGT 67
+ L + ++ + N + N +VCV + K A+ L + +E ++ K+ +GT
Sbjct: 151 AIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGT 209
>d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein
(HPr) {Enterococcus faecalis [TaxId: 1351]}
Length = 87
Score = 23.9 bits (52), Expect = 5.2
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 101 PATKICEKLKKSDSQICDLRYDKQIDFKTV-DLKKLKVR 138
PAT + + K +S I K ++ K++ + L V
Sbjct: 18 PATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVG 56
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70
{Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 23.1 bits (50), Expect = 6.6
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 127 FKTVDLKKLKVRDLKKILNDWEEECDGCLEKGDFIKRIEE 166
L K V LK+ + + +K + ++ + +
Sbjct: 10 ISKGTLGKFTVPMLKEACRAYGLKSGL--KKQELLEALTK 47
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 429
Score = 25.1 bits (54), Expect = 6.7
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 99 GMPATKICEKLKKSDSQICDLRYDKQIDFKTVDLKKLKVRDLKKILNDWEEECDGCLEKG 158
+ ++ K+SD L++L V ++L W+ +
Sbjct: 341 DLNEIQLGVAYKRSDGTPVK-----SFPGDLRLLEELHV--EYEVLPGWKSDISSVRNYS 393
Query: 159 D-------FIKRIEEL 167
D +++RIEEL
Sbjct: 394 DLPKAAQQYVERIEEL 409
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum
vulgare) [TaxId: 4513]}
Length = 104
Score = 23.9 bits (51), Expect = 7.2
Identities = 6/35 (17%), Positives = 9/35 (25%), Gaps = 2/35 (5%)
Query: 31 CEVCVTVVEKFADRLTPEAKADTKEIEKAFKKWCK 65
C C V ++L I + C
Sbjct: 69 CSACEMAVVWMQNQL--AQNKTQDLILDYVNQLCN 101
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 24.6 bits (53), Expect = 7.7
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 10 CMILVLNGLKNAVNCAVTKENCEVC-VTVVEKFADRLTPE-----AKADTKEIEKAFKK 62
M+L L + ++ + EN EV V V ++ ++PE + + I + KK
Sbjct: 185 AMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 243
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 24.3 bits (52), Expect = 8.2
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 10 CMILVLNGLKNAVNCAVTKENCEVCVTVVEKFADRLTPEAKADTKEIEKAFKK 62
+LVL LK + + + N ++ + E + + K+
Sbjct: 188 AELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNE------KTAELIKE 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.416
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,391
Number of extensions: 33730
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 34
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)