BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3581
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIG 71
N L + I++ + SFS++ T++ KLK DVRIILG F++ A +FC AY
Sbjct: 171 RNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEEN 230
Query: 72 MIGRKYQWLIIGMYSESWWN------GSLPCPIEELVTALDGCILTDLLPLSTSGEITVS 125
M G KYQW+I G Y SWW S C + L+ A++G I D PLS+ T+S
Sbjct: 231 MYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTIS 290
Query: 126 G 126
G
Sbjct: 291 G 291
>pdb|1W2T|A Chain A, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|B Chain B, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|C Chain C, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|D Chain D, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|E Chain E, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|F Chain F, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
Length = 432
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 39 ALAKLKE----TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMY--SESWWNG 92
++ +LKE + R +L + +F+A F R+ +IG WL G+Y WNG
Sbjct: 216 SMGELKEGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNG 275
Query: 93 SLPCPIE 99
+ P E
Sbjct: 276 VMSLPRE 282
>pdb|1UYP|A Chain A, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|B Chain B, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|C Chain C, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|D Chain D, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|E Chain E, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|F Chain F, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
Length = 432
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 39 ALAKLKE----TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMY--SESWWNG 92
++ +LKE + R +L + +F+A F R+ +IG WL G+Y WNG
Sbjct: 216 SMGELKEGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNG 275
Query: 93 SLPCPIE 99
+ P E
Sbjct: 276 VMSLPRE 282
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 15 LLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG 74
LL E V+ + ++ L + +E + R+I+ + +E A ++ A + M G
Sbjct: 163 LLEERESKAEKVLQFDPGTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTG 222
Query: 75 RKYQWLI 81
Y WL+
Sbjct: 223 SGYVWLV 229
>pdb|2OPL|B Chain B, Crystal Structure Of An Osmc-Like Protein (Gsu2788) From
Geobacter Sulfurreducens At 1.50 A Resolution
Length = 187
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 97 PIEELVTALDGCILTDLLPLSTSGEITVSGIVS 129
P+E L+ AL GC+ T L+ + + I + G+ S
Sbjct: 85 PVEYLLVALSGCLTTSLVAHAAARGIALRGVKS 117
>pdb|2OPL|A Chain A, Crystal Structure Of An Osmc-Like Protein (Gsu2788) From
Geobacter Sulfurreducens At 1.50 A Resolution
Length = 187
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 97 PIEELVTALDGCILTDLLPLSTSGEITVSGIVS 129
P+E L+ AL GC+ T L+ + + I + G+ S
Sbjct: 85 PVEYLLVALSGCLTTSLVAHAAARGIALRGVKS 117
>pdb|3V6O|A Chain A, Leptin Receptor-Antibody Complex
pdb|3V6O|B Chain B, Leptin Receptor-Antibody Complex
Length = 206
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 45 ETDVRIILGNFNEFWAKMIFCE-----AYRIGMIGRKYQWLIIGMYSESWWNGSLPCP 97
+ ++ I +G W K +F E R G+ G++ QW + +Y + SLP P
Sbjct: 117 KAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVP 174
>pdb|3W0K|A Chain A, Crystal Structure Of A Glycoside Hydrolase
pdb|3W0K|B Chain B, Crystal Structure Of A Glycoside Hydrolase
Length = 330
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 74 GRKYQWLIIGMYSESWWNGS--LPCP 97
GR YQ + + Y SWW+G LP P
Sbjct: 195 GRGYQPMALTHYQASWWDGHKGLPEP 220
>pdb|3M0Z|A Chain A, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|B Chain B, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|C Chain C, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|D Chain D, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae
Length = 249
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIIL 52
++++L LD+G+ ++ H +S I A + DVR +L
Sbjct: 201 YSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLL 241
>pdb|1OGY|A Chain A, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|C Chain C, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|E Chain E, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|G Chain G, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|I Chain I, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|K Chain K, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|M Chain M, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|O Chain O, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
Length = 802
Score = 25.8 bits (55), Expect = 9.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 79 WLIIGMYSESWWNGSLPCPIEELVTALDGCI 109
WL+ G E W +GS+ EL A G +
Sbjct: 689 WLVTGRVLEHWHSGSMTLRWPELYKAFPGAV 719
>pdb|3S6H|A Chain A, Crystal Structure Of Native MmnagsK
pdb|3S6H|B Chain B, Crystal Structure Of Native MmnagsK
pdb|3S6H|X Chain X, Crystal Structure Of Native MmnagsK
pdb|3S6H|Y Chain Y, Crystal Structure Of Native MmnagsK
Length = 460
Score = 25.8 bits (55), Expect = 9.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 89 WWNGSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVSTVLLSSVPGGT 140
W NG + +EE+ LD LPLS+S IT ++ L + GT
Sbjct: 261 WVNGGMRLKLEEIKRLLDD------LPLSSSVSITRPSELARELFTHAGSGT 306
>pdb|3S7Y|A Chain A, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
pdb|3S7Y|X Chain X, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
Length = 461
Score = 25.8 bits (55), Expect = 9.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 89 WWNGSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVSTVLLSSVPGGT 140
W NG + +EE+ LD LPLS+S IT ++ L + GT
Sbjct: 261 WVNGGMRLKLEEIKRLLDD------LPLSSSVSITRPSELARELFTHAGSGT 306
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 33 SDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81
+ ++ L + KE + R+I+ + +E A ++ A + M G Y WL+
Sbjct: 200 TKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLV 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,157,734
Number of Sequences: 62578
Number of extensions: 161674
Number of successful extensions: 377
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 20
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)