BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3581
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75899|GABR2_HUMAN Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens
GN=GABBR2 PE=1 SV=1
Length = 941
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIG 71
N L + I++ + SFS++ T++ KLK DVRIILG F++ A +FC AY
Sbjct: 212 RNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEEN 271
Query: 72 MIGRKYQWLIIGMYSESWWN------GSLPCPIEELVTALDGCILTDLLPLSTSGEITVS 125
M G KYQW+I G Y SWW S C + L+ A++G I D PLS+ T+S
Sbjct: 272 MYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTIS 331
Query: 126 G 126
G
Sbjct: 332 G 332
>sp|O88871|GABR2_RAT Gamma-aminobutyric acid type B receptor subunit 2 OS=Rattus
norvegicus GN=Gabbr2 PE=1 SV=2
Length = 940
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIG 71
N L + I++ + SFS++ T++ KLK DVRIILG F++ A +FC A+
Sbjct: 211 RNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAFEES 270
Query: 72 MIGRKYQWLIIGMYSESWWN------GSLPCPIEELVTALDGCILTDLLPLSTSGEITVS 125
M G KYQW+I G Y +WW S C L+ A++G I D PLS+ T+S
Sbjct: 271 MFGSKYQWIIPGWYEPAWWEQVHVEANSSRCLRRSLLAAMEGYIGVDFEPLSSKQIKTIS 330
Query: 126 G 126
G
Sbjct: 331 G 331
>sp|Q80T41|GABR2_MOUSE Gamma-aminobutyric acid type B receptor subunit 2 OS=Mus musculus
GN=Gabbr2 PE=2 SV=2
Length = 940
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIG 71
N L + I++ + SFS++ T++ KLK DVRIILG F++ A +FC A+
Sbjct: 211 RNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAFEES 270
Query: 72 MIGRKYQWLIIGMYSESWWN------GSLPCPIEELVTALDGCILTDLLPLSTSGEITVS 125
M G KYQW+I G Y +WW S C L+ A++G I D PLS+ T+S
Sbjct: 271 MFGSKYQWIIPGWYEPAWWEQVHVEANSSRCLRRSLLAAMEGYIGVDFEPLSSKQIKTIS 330
Query: 126 G 126
G
Sbjct: 331 G 331
>sp|Q9Z0U4|GABR1_RAT Gamma-aminobutyric acid type B receptor subunit 1 OS=Rattus
norvegicus GN=Gabbr1 PE=1 SV=1
Length = 991
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72
+ L + ++GI++ SF + + + LK D RII+G F E A+ +FCE Y+ +
Sbjct: 323 DDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERL 382
Query: 73 IGRKYQWLIIGMYSESW---WNGSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVS 129
G+KY W +IG Y+++W ++ S+ C +EE+ A++G I T+++ L+ + ++S + S
Sbjct: 383 FGKKYVWFLIGWYADNWFKTYDPSINCTVEEMTEAVEGHITTEIVMLNPANTRSISNMTS 442
>sp|Q9WV18|GABR1_MOUSE Gamma-aminobutyric acid type B receptor subunit 1 OS=Mus musculus
GN=Gabbr1 PE=1 SV=1
Length = 960
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72
+ L + ++GI++ SF + + + LK D RII+G F E A+ +FCE Y+ +
Sbjct: 323 DDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERL 382
Query: 73 IGRKYQWLIIGMYSESW---WNGSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVS 129
G+KY W +IG Y+++W ++ S+ C +EE+ A++G I T+++ L+ + ++S + S
Sbjct: 383 FGKKYVWFLIGWYADNWFKTYDPSINCTVEEMTEAVEGHITTEIVMLNPANTRSISNMTS 442
>sp|Q9UBS5|GABR1_HUMAN Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens
GN=GABBR1 PE=1 SV=1
Length = 961
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72
+ L + ++GI++ SF + + + LK D RII+G F E A+ +FCE Y+ +
Sbjct: 324 DDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERL 383
Query: 73 IGRKYQWLIIGMYSESW---WNGSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVS 129
G+KY W +IG Y+++W ++ S+ C ++E+ A++G I T+++ L+ + ++S + S
Sbjct: 384 FGKKYVWFLIGWYADNWFKIYDPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTS 443
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2
Length = 896
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 26 VMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81
V+ ++ DEIS L KL R+ + + N F A +F +A G++ + Y W++
Sbjct: 200 VISPNATDDEISVDLLKLMTKPTRVFVVHMNRFLASRVFSKARETGLMKQGYAWIL 255
>sp|Q7XJL2|GLR31_ARATH Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2
Length = 921
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 24 IDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWL 80
+DV+++ EI L K++ + R+I+ N KMIF EA R+GM+ + Y W+
Sbjct: 201 LDVVITSPV--EIIEELIKIRGMESRVIVVNTFPNTGKMIFKEAERLGMMEKGYVWI 255
>sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2
Length = 912
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 24 IDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWL 80
+DV+++ EI L K++ + R+I+ N K IF EA ++GM+ + Y W+
Sbjct: 201 LDVVITSP--REIINELVKIQGMESRVIIVNTFPKTGKKIFEEAQKLGMMEKGYVWI 255
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2
Length = 901
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 26 VMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81
V+ ++ DEIS L ++ R+ + + E A F +A IG++ + Y W++
Sbjct: 200 VISPNATDDEISVELLRMMTLPTRVFVVHLVELLASRFFAKATEIGLMKQGYVWIL 255
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1
Length = 940
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 26 VMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81
V+ + DEI L KL E R+ + + A +F A IGM+ Y WL+
Sbjct: 195 VIPPEAIDDEIQKELRKLMERQARVFVVHMESSLALRVFQIARDIGMMEEGYVWLM 250
>sp|Q8LGN1|GLR14_ARATH Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=GLR1.4 PE=2 SV=2
Length = 861
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 36 ISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81
I L K K + +RI + + +E A +F A R+GM+ Y W++
Sbjct: 224 IMKQLRKFKASGIRIFVAHISERIANRLFPCARRLGMMEEGYAWIL 269
>sp|Q7XP59|GLR31_ORYSJ Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1
PE=1 SV=1
Length = 938
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 33 SDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWL 80
++EI+ L K+ + R+I+ + N ++F +A ++GM+ Y W+
Sbjct: 205 NNEIADVLIKVAMMESRVIILHANPDSGLVVFQQALKLGMVSNGYAWI 252
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2
Length = 947
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 15 LLAEMLDSGID--VMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72
L + D +D V+ S + D+I L KL R+ + + A IF +A IGM
Sbjct: 185 LFDALQDVQVDRSVIPSEANDDQILKELYKLMTRQTRVFVVHMASRLASRIFEKATEIGM 244
Query: 73 IGRKYQWLI 81
+ Y WL+
Sbjct: 245 MEEGYVWLM 253
>sp|O33833|BFRA_THEMA Beta-fructosidase OS=Thermotoga maritima (strain ATCC 43589 / MSB8
/ DSM 3109 / JCM 10099) GN=bfrA PE=1 SV=1
Length = 432
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 39 ALAKLKE----TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMY--SESWWNG 92
++ +LKE + R +L + +F+A F R+ +IG WL G+Y WNG
Sbjct: 216 SMGELKEGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNG 275
Query: 93 SLPCPIE 99
+ P E
Sbjct: 276 VMSLPRE 282
>sp|C0QFS1|MUTS_DESAH DNA mismatch repair protein MutS OS=Desulfobacterium autotrophicum
(strain ATCC 43914 / DSM 3382 / HRM2) GN=mutS PE=3 SV=1
Length = 895
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 9 YRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF-----------NE 57
+RA + +A++++SG+ V V D S A +K VR+I N
Sbjct: 69 HRAADVYIAKLIESGLKVAVCEQMEDPRS-AQGIVKREVVRVITPGMILNEDLLDKKSNN 127
Query: 58 FWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWW---NGSLPCPIEELVTALDGCILTDLL 114
F A + C+ G G + GM+ + NG +P + + +D L LL
Sbjct: 128 FLAALCICQ----GAAGLACMDISTGMFRTTQTVAVNGKVPLSLVDEALRIDAKEL--LL 181
Query: 115 PLSTSGEITVSGIV 128
P S G+ T S ++
Sbjct: 182 PASFKGDPTYSQLI 195
>sp|Q3TZX8|NOL9_MOUSE Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Mus musculus GN=Nol9 PE=1
SV=1
Length = 714
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 96 CPIEELVT-ALDGCILTDLLPLSTSGEITVSGIVSTVLLSSVPG 138
C +EELV+ + DGC + L G+ T + I+ LL+S+PG
Sbjct: 302 CALEELVSVSCDGCPVILLCGACDIGKSTFNRILINQLLNSIPG 345
>sp|Q1MP42|SYA_LAWIP Alanine--tRNA ligase OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=alaS PE=3 SV=1
Length = 884
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 97 PIEELVTALDGCILTDLLPL--STSGEITVSGIVSTV 131
PIEEL T G ++TD+ P ++ G+ GI+ST+
Sbjct: 484 PIEELPTKSSGYVITDMTPFYGTSGGQTGDIGILSTI 520
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 41 AKLKET--DVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWWNGSLPCPI 98
K+KE D + L EFW E R G GR + +Y+ES ++ P P+
Sbjct: 459 GKVKEMSYDPQAKLQRLQEFWISQASAEQ-RKGRAGRTGPGVCFRLYAESDYDAFAPYPV 517
Query: 99 EEL-VTALDGCIL 110
E+ ALD +L
Sbjct: 518 PEIRRVALDSLVL 530
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,026,374
Number of Sequences: 539616
Number of extensions: 2006022
Number of successful extensions: 5152
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5129
Number of HSP's gapped (non-prelim): 25
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)