Query psy3581
Match_columns 146
No_of_seqs 103 out of 230
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 20:17:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1055|consensus 100.0 3.1E-31 6.7E-36 239.8 8.8 128 7-134 193-323 (865)
2 cd06384 PBP1_NPR_B Ligand-bind 99.3 3.9E-11 8.4E-16 101.6 11.8 101 12-113 165-276 (399)
3 cd06385 PBP1_NPR_A Ligand-bind 99.2 1.1E-10 2.5E-15 98.6 12.6 100 11-112 164-274 (405)
4 cd06391 PBP1_iGluR_delta_2 N-t 99.2 8.7E-11 1.9E-15 101.0 11.2 98 10-113 152-259 (400)
5 cd06372 PBP1_GC_G_like Ligand- 99.2 4E-10 8.7E-15 94.8 13.4 101 14-115 161-265 (391)
6 cd06366 PBP1_GABAb_receptor Li 99.2 6.7E-10 1.5E-14 91.5 12.7 105 12-117 152-261 (350)
7 cd06386 PBP1_NPR_C_like Ligand 99.1 6E-10 1.3E-14 94.4 11.9 102 12-114 157-268 (387)
8 cd06383 PBP1_iGluR_AMPA_Like N 99.1 2.1E-10 4.5E-15 97.6 8.2 69 32-100 169-245 (368)
9 cd06380 PBP1_iGluR_AMPA N-term 99.1 4.6E-10 9.9E-15 94.0 9.7 80 11-90 141-226 (382)
10 cd06371 PBP1_sensory_GC_DEF_li 99.0 3.4E-09 7.4E-14 89.8 12.5 104 11-114 148-264 (382)
11 cd06350 PBP1_GPCR_family_C_lik 99.0 2.3E-09 5E-14 87.8 10.1 99 10-116 175-278 (348)
12 cd06373 PBP1_NPR_like Ligand b 99.0 5.5E-09 1.2E-13 88.0 12.5 102 11-114 162-274 (396)
13 cd06379 PBP1_iGluR_NMDA_NR1 N- 99.0 2.9E-09 6.3E-14 89.3 10.3 74 11-84 170-250 (377)
14 cd06378 PBP1_iGluR_NMDA_NR2 N- 99.0 3E-09 6.4E-14 90.4 9.4 53 36-88 182-234 (362)
15 cd06352 PBP1_NPR_GC_like Ligan 98.9 2E-08 4.3E-13 83.9 12.5 103 12-115 155-268 (389)
16 PF01094 ANF_receptor: Recepto 98.9 2.7E-08 5.8E-13 80.3 11.0 101 10-115 136-242 (348)
17 cd06367 PBP1_iGluR_NMDA N-term 98.9 1.2E-08 2.5E-13 85.0 8.7 76 11-86 152-233 (362)
18 cd06370 PBP1_Speract_GC_like L 98.7 1.5E-07 3.3E-12 79.9 12.1 104 11-115 152-279 (404)
19 cd06374 PBP1_mGluR_groupI Liga 98.7 1.2E-07 2.6E-12 82.4 10.9 97 11-114 202-305 (472)
20 cd06390 PBP1_iGluR_AMPA_GluR1 98.7 1.9E-07 4.1E-12 79.4 10.8 98 11-116 132-233 (364)
21 cd06362 PBP1_mGluR Ligand bind 98.7 1.4E-07 3E-12 80.9 9.5 113 11-130 188-307 (452)
22 cd06368 PBP1_iGluR_non_NMDA_li 98.6 2.1E-07 4.6E-12 75.6 9.5 77 10-86 141-219 (324)
23 cd06269 PBP1_glutamate_recepto 98.6 3.2E-07 7E-12 71.7 9.6 93 11-111 156-251 (298)
24 cd06392 PBP1_iGluR_delta_1 N-t 98.6 4E-07 8.7E-12 78.9 10.2 92 12-114 154-260 (400)
25 cd06365 PBP1_Pheromone_recepto 98.6 4.7E-07 1E-11 79.0 9.9 97 10-115 187-291 (469)
26 cd06393 PBP1_iGluR_Kainate_Glu 98.5 5.4E-07 1.2E-11 76.1 9.2 71 13-84 156-229 (384)
27 cd06387 PBP1_iGluR_AMPA_GluR3 98.4 3E-06 6.4E-11 72.6 11.4 72 11-83 139-215 (372)
28 cd06388 PBP1_iGluR_AMPA_GluR4 98.4 1.8E-06 4E-11 73.4 9.3 73 12-84 140-215 (371)
29 cd06361 PBP1_GPC6A_like Ligand 98.4 2.6E-06 5.5E-11 73.2 10.1 97 11-115 188-294 (403)
30 cd06389 PBP1_iGluR_AMPA_GluR2 98.4 2.2E-06 4.9E-11 72.6 9.2 73 12-84 134-213 (370)
31 cd06351 PBP1_iGluR_N_LIVBP_lik 98.4 3.1E-06 6.6E-11 68.1 9.3 95 13-115 149-247 (328)
32 cd06382 PBP1_iGluR_Kainate N-t 98.4 3.3E-06 7.1E-11 69.1 9.4 74 13-87 143-221 (327)
33 cd06375 PBP1_mGluR_groupII Lig 98.3 9.4E-06 2E-10 70.8 11.6 95 11-115 190-291 (458)
34 cd06394 PBP1_iGluR_Kainate_KA1 98.3 4.5E-06 9.7E-11 70.5 9.2 54 34-87 173-226 (333)
35 cd06376 PBP1_mGluR_groupIII Li 98.2 1.1E-05 2.4E-10 69.9 10.1 96 11-113 188-290 (463)
36 cd06364 PBP1_CaSR Ligand-bindi 98.2 1.2E-05 2.5E-10 71.3 9.7 96 11-114 203-304 (510)
37 cd06363 PBP1_Taste_receptor Li 98.0 4.5E-05 9.7E-10 65.0 9.9 70 12-83 193-268 (410)
38 cd04509 PBP1_ABC_transporter_G 98.0 7.8E-05 1.7E-09 58.0 10.3 98 12-117 153-253 (299)
39 cd06338 PBP1_ABC_ligand_bindin 97.7 0.00076 1.6E-08 55.2 11.0 95 12-115 158-255 (345)
40 cd06381 PBP1_iGluR_delta_like 97.5 0.0018 3.8E-08 55.2 11.4 97 12-115 154-261 (363)
41 cd06346 PBP1_ABC_ligand_bindin 97.4 0.0013 2.7E-08 53.7 9.3 91 12-112 154-248 (312)
42 cd06342 PBP1_ABC_LIVBP_like Ty 97.4 0.0018 3.9E-08 52.4 10.0 93 12-115 152-248 (334)
43 cd06340 PBP1_ABC_ligand_bindin 97.4 0.0016 3.6E-08 53.8 9.6 95 12-114 161-258 (347)
44 KOG4440|consensus 97.2 0.00071 1.5E-08 62.2 6.3 51 34-84 211-261 (993)
45 cd06348 PBP1_ABC_ligand_bindin 97.2 0.0041 9E-08 51.0 10.4 94 11-114 153-249 (344)
46 cd06327 PBP1_SBP_like_1 Peripl 97.1 0.0038 8.2E-08 51.2 8.9 95 12-116 152-250 (334)
47 KOG1053|consensus 97.0 0.0015 3.3E-08 61.9 6.3 50 38-87 222-271 (1258)
48 cd06347 PBP1_ABC_ligand_bindin 96.7 0.023 5E-07 45.8 10.1 93 12-114 153-248 (334)
49 cd06334 PBP1_ABC_ligand_bindin 96.6 0.018 3.8E-07 48.3 9.5 94 12-115 157-253 (351)
50 cd06336 PBP1_ABC_ligand_bindin 96.6 0.0081 1.7E-07 49.7 7.3 64 12-75 155-222 (347)
51 cd06330 PBP1_Arsenic_SBP_like 96.5 0.019 4.1E-07 47.1 8.4 97 12-117 155-256 (346)
52 PRK15404 leucine ABC transport 96.4 0.033 7.2E-07 47.0 9.9 91 12-112 178-271 (369)
53 cd06343 PBP1_ABC_ligand_bindin 96.2 0.042 9.2E-07 45.4 9.3 96 11-115 160-259 (362)
54 cd06268 PBP1_ABC_transporter_L 96.1 0.08 1.7E-06 41.0 10.0 96 12-117 152-250 (298)
55 cd06360 PBP1_alkylbenzenes_lik 96.0 0.095 2.1E-06 42.5 10.2 96 12-115 151-249 (336)
56 cd06345 PBP1_ABC_ligand_bindin 96.0 0.041 8.8E-07 45.2 8.0 63 12-74 161-226 (344)
57 cd06355 PBP1_FmdD_like Peripla 96.0 0.043 9.4E-07 45.5 8.2 72 12-83 150-224 (348)
58 cd06329 PBP1_SBP_like_3 Peripl 95.7 0.098 2.1E-06 43.1 9.1 92 12-114 160-257 (342)
59 KOG1052|consensus 95.5 0.04 8.8E-07 50.0 6.8 75 38-117 4-79 (656)
60 cd06337 PBP1_ABC_ligand_bindin 95.5 0.12 2.6E-06 43.0 9.2 61 15-75 168-231 (357)
61 cd06357 PBP1_AmiC Periplasmic 95.4 0.14 3E-06 42.8 9.2 95 12-114 149-248 (360)
62 cd01391 Periplasmic_Binding_Pr 95.3 0.16 3.5E-06 38.0 8.4 75 12-87 142-221 (269)
63 cd06333 PBP1_ABC-type_HAAT_lik 95.2 0.23 4.9E-06 40.1 9.7 91 12-112 150-243 (312)
64 PF13458 Peripla_BP_6: Peripla 95.2 0.44 9.5E-06 38.5 11.2 95 12-115 152-250 (343)
65 cd06358 PBP1_NHase Type I peri 95.0 0.12 2.5E-06 42.4 7.5 64 12-75 149-215 (333)
66 cd06335 PBP1_ABC_ligand_bindin 94.5 0.21 4.5E-06 41.3 7.8 63 12-74 155-220 (347)
67 cd06377 PBP1_iGluR_NMDA_NR3 N- 94.4 0.21 4.5E-06 43.5 7.9 41 37-83 200-241 (382)
68 KOG1056|consensus 94.3 0.47 1E-05 45.4 10.4 96 11-113 210-311 (878)
69 cd06331 PBP1_AmiC_like Type I 94.2 0.3 6.5E-06 39.9 8.1 67 12-78 149-218 (333)
70 cd06349 PBP1_ABC_ligand_bindin 94.2 0.27 5.9E-06 40.2 7.8 64 12-75 152-218 (340)
71 cd06356 PBP1_Amide_Urea_BP_lik 92.1 0.64 1.4E-05 38.2 7.0 61 12-72 149-212 (334)
72 cd06341 PBP1_ABC_ligand_bindin 92.1 0.76 1.6E-05 37.5 7.4 92 12-113 150-244 (341)
73 cd06326 PBP1_STKc_like Type I 91.5 1.2 2.5E-05 36.1 7.8 63 12-74 153-218 (336)
74 TIGR03407 urea_ABC_UrtA urea A 90.9 1.6 3.4E-05 36.4 8.2 65 13-77 152-219 (359)
75 TIGR03669 urea_ABC_arch urea A 89.9 1.4 3.1E-05 37.4 7.2 63 13-75 151-216 (374)
76 cd06332 PBP1_aromatic_compound 88.6 3.5 7.7E-05 33.0 8.4 90 14-114 153-245 (333)
77 cd06359 PBP1_Nba_like Type I p 88.2 3.4 7.4E-05 33.7 8.1 83 24-114 160-245 (333)
78 cd06328 PBP1_SBP_like_2 Peripl 87.4 2.6 5.7E-05 34.6 7.0 62 12-73 153-218 (333)
79 cd06369 PBP1_GC_C_enterotoxin_ 87.1 3.9 8.4E-05 35.8 8.1 93 13-116 173-267 (380)
80 cd06344 PBP1_ABC_ligand_bindin 78.9 19 0.00041 29.3 8.7 62 8-70 147-213 (332)
81 COG0683 LivK ABC-type branched 77.8 9 0.00019 32.2 6.7 65 12-76 165-232 (366)
82 cd06339 PBP1_YraM_LppC_lipopro 77.3 11 0.00023 31.1 6.9 58 13-70 142-224 (336)
83 COG1225 Bcp Peroxiredoxin [Pos 73.0 8.3 0.00018 29.7 4.8 68 10-83 51-122 (157)
84 cd04908 ACT_Bt0572_1 N-termina 71.9 12 0.00027 23.5 4.8 22 11-32 14-35 (66)
85 TIGR00640 acid_CoA_mut_C methy 71.8 22 0.00048 26.2 6.7 76 9-87 16-95 (132)
86 cd06167 LabA_like LabA_like pr 69.8 16 0.00034 26.4 5.5 21 11-31 53-73 (149)
87 cd03411 Ferrochelatase_N Ferro 65.9 54 0.0012 24.5 7.9 72 13-85 75-157 (159)
88 PTZ00445 p36-lilke protein; Pr 61.0 31 0.00068 28.1 6.0 51 9-60 28-104 (219)
89 cd00860 ThrRS_anticodon ThrRS 58.2 34 0.00073 22.2 5.0 43 12-55 17-59 (91)
90 PF13685 Fe-ADH_2: Iron-contai 57.0 76 0.0016 26.0 7.8 66 5-72 28-100 (250)
91 PF04577 DUF563: Protein of un 55.6 16 0.00036 27.5 3.5 52 12-67 121-172 (206)
92 PF01936 NYN: NYN domain; Int 54.8 21 0.00046 25.2 3.8 85 12-111 49-145 (146)
93 TIGR01501 MthylAspMutase methy 54.2 89 0.0019 23.3 8.8 74 8-84 14-91 (134)
94 PRK05625 5-amino-6-(5-phosphor 53.0 95 0.0021 24.1 7.6 69 14-86 107-175 (217)
95 PF12710 HAD: haloacid dehalog 52.9 29 0.00064 25.5 4.5 37 34-72 92-128 (192)
96 PRK15424 propionate catabolism 52.2 26 0.00055 32.0 4.7 50 8-57 115-165 (538)
97 TIGR01508 rib_reduct_arch 2,5- 50.9 1E+02 0.0023 24.0 7.5 70 14-87 103-172 (210)
98 cd02072 Glm_B12_BD B12 binding 50.3 74 0.0016 23.6 6.1 75 8-85 12-90 (128)
99 COG2185 Sbm Methylmalonyl-CoA 48.3 85 0.0018 23.9 6.3 53 11-64 28-80 (143)
100 PF13271 DUF4062: Domain of un 47.1 76 0.0016 21.1 5.4 51 13-83 16-70 (83)
101 PF03129 HGTP_anticodon: Antic 46.9 82 0.0018 20.7 6.5 48 10-58 16-63 (94)
102 cd04882 ACT_Bt0572_2 C-termina 46.5 39 0.00085 20.4 3.7 19 12-30 13-31 (65)
103 PF06076 Orthopox_F14: Orthopo 46.5 21 0.00045 23.7 2.4 34 14-47 39-72 (73)
104 PHA02780 hypothetical protein; 46.1 21 0.00046 23.7 2.4 34 14-47 39-72 (73)
105 cd00858 GlyRS_anticodon GlyRS 45.5 58 0.0013 23.0 4.9 39 13-53 45-83 (121)
106 PHA02627 hypothetical protein; 45.2 23 0.0005 23.5 2.4 34 14-47 39-72 (73)
107 cd04883 ACT_AcuB C-terminal AC 45.1 74 0.0016 19.7 5.0 19 12-30 15-33 (72)
108 TIGR02329 propionate_PrpR prop 44.6 40 0.00086 30.6 4.7 23 34-56 132-154 (526)
109 PLN02449 ferrochelatase 42.6 1.4E+02 0.0029 27.2 7.7 87 13-105 167-268 (485)
110 PF00578 AhpC-TSA: AhpC/TSA fa 42.6 81 0.0017 21.4 5.1 33 37-69 49-81 (124)
111 COG1436 NtpG Archaeal/vacuolar 42.4 33 0.00071 24.6 3.1 44 14-57 12-56 (104)
112 cd04905 ACT_CM-PDT C-terminal 42.4 93 0.002 20.1 5.5 22 12-33 15-36 (80)
113 COG4567 Response regulator con 42.0 1.4E+02 0.0029 23.6 6.6 60 11-72 21-104 (182)
114 cd00885 cinA Competence-damage 41.9 78 0.0017 24.2 5.3 64 12-76 21-92 (170)
115 COG1707 ACT domain-containing 40.7 1E+02 0.0022 24.6 5.8 66 12-77 16-116 (218)
116 cd06597 GH31_transferase_CtsY 39.8 59 0.0013 27.6 4.8 41 12-52 26-103 (340)
117 COG4421 Capsular polysaccharid 38.8 49 0.0011 28.8 4.1 60 13-82 244-303 (368)
118 cd01302 Cyclic_amidohydrolases 38.2 1.4E+02 0.003 24.9 6.8 81 38-118 137-232 (337)
119 cd00861 ProRS_anticodon_short 38.0 76 0.0017 20.7 4.3 43 12-55 20-62 (94)
120 KOG2730|consensus 37.8 47 0.001 27.6 3.7 37 46-85 115-152 (263)
121 cd06533 Glyco_transf_WecG_TagA 37.3 1.2E+02 0.0025 23.0 5.7 17 40-56 92-108 (171)
122 cd03409 Chelatase_Class_II Cla 37.2 88 0.0019 20.8 4.5 48 11-58 18-70 (101)
123 PF13840 ACT_7: ACT domain ; P 37.1 88 0.0019 19.8 4.3 35 10-44 22-64 (65)
124 PF02608 Bmp: Basic membrane p 36.9 2.2E+02 0.0047 23.4 7.6 70 13-88 23-97 (306)
125 cd05569 PTS_IIB_fructose PTS_I 36.6 67 0.0015 22.1 3.9 50 9-58 15-66 (96)
126 PF01990 ATP-synt_F: ATP synth 36.4 1.4E+02 0.003 20.3 5.7 63 13-75 7-70 (95)
127 KOG0259|consensus 36.2 17 0.00036 32.3 0.9 106 8-134 216-332 (447)
128 PHA02754 hypothetical protein; 34.7 45 0.00098 21.9 2.5 25 8-32 16-40 (67)
129 COG1058 CinA Predicted nucleot 34.7 1.5E+02 0.0032 24.6 6.2 60 12-72 23-90 (255)
130 PF00072 Response_reg: Respons 34.5 1.3E+02 0.0029 19.5 5.7 56 12-71 11-69 (112)
131 PF06414 Zeta_toxin: Zeta toxi 34.5 2.1E+02 0.0045 21.8 7.3 45 12-56 82-128 (199)
132 PF00762 Ferrochelatase: Ferro 34.4 2.1E+02 0.0047 24.0 7.3 93 12-108 75-178 (316)
133 PF02593 dTMP_synthase: Thymid 34.2 1.3E+02 0.0028 24.4 5.7 62 33-107 39-101 (217)
134 PRK13938 phosphoheptose isomer 34.1 1.8E+02 0.0039 22.8 6.4 17 60-76 179-195 (196)
135 cd06313 PBP1_ABC_sugar_binding 33.7 1.9E+02 0.0042 22.5 6.6 64 8-72 14-81 (272)
136 PRK15408 autoinducer 2-binding 32.7 2E+02 0.0044 24.0 6.9 64 9-72 39-106 (336)
137 PF02310 B12-binding: B12 bind 32.4 1.6E+02 0.0036 20.0 7.8 79 7-86 12-91 (121)
138 cd04726 KGPDC_HPS 3-Keto-L-gul 32.3 2.2E+02 0.0047 21.4 6.6 16 40-55 70-85 (202)
139 PRK13010 purU formyltetrahydro 31.8 75 0.0016 26.6 4.1 61 14-74 132-196 (289)
140 PF01408 GFO_IDH_MocA: Oxidore 31.3 1.4E+02 0.003 20.3 4.8 42 12-53 75-119 (120)
141 cd01540 PBP1_arabinose_binding 31.1 2.5E+02 0.0054 21.7 7.8 64 8-71 14-79 (289)
142 smart00852 MoCF_biosynth Proba 30.7 1.1E+02 0.0024 21.8 4.4 42 10-52 18-62 (135)
143 PRK14059 hypothetical protein; 30.6 2.7E+02 0.0058 22.6 7.1 69 15-87 144-214 (251)
144 PF12689 Acid_PPase: Acid Phos 30.3 1E+02 0.0022 23.7 4.4 31 34-64 48-80 (169)
145 PF01976 DUF116: Protein of un 30.3 2.5E+02 0.0053 21.4 6.4 60 12-75 75-134 (158)
146 cd06598 GH31_transferase_CtsZ 30.2 1.2E+02 0.0026 25.3 5.1 62 11-72 25-109 (317)
147 PRK06027 purU formyltetrahydro 29.9 1.1E+02 0.0023 25.5 4.7 61 14-74 128-192 (286)
148 cd06599 GH31_glycosidase_Aec37 29.9 1.5E+02 0.0031 24.8 5.5 63 11-73 30-113 (317)
149 cd06602 GH31_MGAM_SI_GAA This 29.7 1.2E+02 0.0026 25.6 5.1 62 11-72 25-110 (339)
150 PF13911 AhpC-TSA_2: AhpC/TSA 29.7 88 0.0019 21.5 3.6 27 39-65 5-31 (115)
151 COG3867 Arabinogalactan endo-1 29.7 3.8E+02 0.0083 23.4 8.0 67 17-92 49-132 (403)
152 cd01294 DHOase Dihydroorotase 29.5 1.9E+02 0.0042 23.9 6.2 79 41-120 155-250 (335)
153 COG3439 Uncharacterized conser 29.3 1.6E+02 0.0034 22.1 5.1 74 5-82 18-93 (137)
154 PF13433 Peripla_BP_5: Peripla 29.2 2.1E+02 0.0045 25.0 6.5 95 8-118 146-252 (363)
155 PF00465 Fe-ADH: Iron-containi 29.2 1.5E+02 0.0034 24.9 5.7 61 11-71 37-104 (366)
156 PF02254 TrkA_N: TrkA-N domain 29.1 1.1E+02 0.0023 20.8 3.9 73 7-80 5-94 (116)
157 PF03060 NMO: Nitronate monoox 28.8 2.3E+02 0.0049 23.8 6.5 42 21-63 111-152 (330)
158 TIGR00460 fmt methionyl-tRNA f 28.8 76 0.0016 26.5 3.7 57 14-72 47-103 (313)
159 PRK10669 putative cation:proto 28.8 1.1E+02 0.0024 27.4 4.9 44 8-55 425-468 (558)
160 PF02602 HEM4: Uroporphyrinoge 28.7 1.9E+02 0.0042 22.0 5.8 55 12-68 129-187 (231)
161 PF02579 Nitro_FeMo-Co: Dinitr 28.4 1.1E+02 0.0024 19.9 3.9 37 14-53 44-80 (94)
162 cd06603 GH31_GANC_GANAB_alpha 28.2 1.4E+02 0.0029 25.2 5.1 62 12-73 26-106 (339)
163 cd06533 Glyco_transf_WecG_TagA 28.2 2.6E+02 0.0057 21.0 7.4 77 5-84 28-109 (171)
164 PF02449 Glyco_hydro_42: Beta- 28.1 1.5E+02 0.0033 25.1 5.4 44 12-55 12-68 (374)
165 PRK13011 formyltetrahydrofolat 28.0 80 0.0017 26.3 3.6 61 14-74 128-192 (286)
166 cd03770 SR_TndX_transposase Se 27.8 1.8E+02 0.004 21.0 5.2 48 15-62 27-83 (140)
167 smart00481 POLIIIAc DNA polyme 27.7 1.6E+02 0.0034 18.3 5.5 43 11-53 16-60 (67)
168 TIGR03151 enACPred_II putative 27.7 2E+02 0.0043 24.0 6.0 59 13-80 77-135 (307)
169 COG1225 Bcp Peroxiredoxin [Pos 27.3 1.3E+02 0.0027 23.2 4.3 38 35-72 52-89 (157)
170 PF03808 Glyco_tran_WecB: Glyc 27.3 2.7E+02 0.0059 20.9 7.9 19 39-57 93-111 (172)
171 KOG4667|consensus 27.2 3.7E+02 0.0081 22.4 7.3 70 11-85 50-139 (269)
172 KOG1054|consensus 27.1 5.7E+02 0.012 24.5 11.0 72 12-84 167-243 (897)
173 cd01027 TOPRIM_RNase_M5_like T 26.9 1.1E+02 0.0023 20.6 3.5 45 17-63 14-61 (81)
174 TIGR03821 AblA_like_1 lysine-2 26.8 3.8E+02 0.0083 22.5 7.6 63 10-72 190-265 (321)
175 cd01538 PBP1_ABC_xylose_bindin 26.5 3.2E+02 0.0069 21.4 8.0 64 8-71 14-80 (288)
176 PRK03670 competence damage-ind 26.3 1.6E+02 0.0035 24.1 5.1 58 12-69 22-87 (252)
177 TIGR01490 HAD-SF-IB-hyp1 HAD-s 26.1 1.6E+02 0.0034 21.9 4.7 36 35-72 91-126 (202)
178 TIGR01662 HAD-SF-IIIA HAD-supe 26.0 1.2E+02 0.0025 21.2 3.8 37 34-70 28-72 (132)
179 TIGR03128 RuMP_HxlA 3-hexulose 25.9 3E+02 0.0064 20.9 7.1 43 14-57 41-86 (206)
180 cd01011 nicotinamidase Nicotin 25.8 1.9E+02 0.0041 22.2 5.2 6 78-83 166-171 (196)
181 PF02142 MGS: MGS-like domain 25.8 1.8E+02 0.004 19.5 4.6 43 17-59 24-72 (95)
182 PRK01215 competence damage-ind 25.6 2.7E+02 0.0059 22.8 6.4 62 12-74 25-94 (264)
183 PF13333 rve_2: Integrase core 25.5 28 0.00061 21.2 0.4 31 97-134 19-49 (52)
184 PF09001 DUF1890: Domain of un 25.5 3E+02 0.0066 20.9 6.0 85 8-106 12-114 (139)
185 TIGR00288 conserved hypothetic 25.4 2.2E+02 0.0049 21.9 5.4 85 12-111 68-155 (160)
186 TIGR00227 ribD_Cterm riboflavi 25.0 3.2E+02 0.0069 20.9 6.8 65 16-86 110-176 (216)
187 cd06309 PBP1_YtfQ_like Peripla 25.0 3.2E+02 0.007 21.0 6.9 45 8-53 14-61 (273)
188 PF00857 Isochorismatase: Isoc 24.9 1.7E+02 0.0036 21.3 4.6 39 14-52 102-142 (174)
189 cd06301 PBP1_rhizopine_binding 24.9 3.2E+02 0.0069 20.9 7.8 64 8-71 14-81 (272)
190 cd04743 NPD_PKS 2-Nitropropane 24.8 2.5E+02 0.0054 24.0 6.1 47 13-62 72-118 (320)
191 PRK09701 D-allose transporter 24.8 3.4E+02 0.0075 21.8 6.8 65 8-72 39-108 (311)
192 COG0031 CysK Cysteine synthase 24.8 1.3E+02 0.0029 25.5 4.4 99 38-141 99-198 (300)
193 cd04795 SIS SIS domain. SIS (S 24.8 1.1E+02 0.0023 19.4 3.2 17 12-28 13-30 (87)
194 PRK10936 TMAO reductase system 24.7 3.9E+02 0.0085 21.9 7.4 64 8-72 61-129 (343)
195 PRK05647 purN phosphoribosylgl 24.6 74 0.0016 25.0 2.7 59 15-73 43-106 (200)
196 TIGR00177 molyb_syn molybdenum 24.5 1.6E+02 0.0035 21.5 4.4 40 12-52 29-71 (144)
197 PF00994 MoCF_biosynth: Probab 24.5 1.3E+02 0.0028 21.7 3.9 59 10-68 17-82 (144)
198 cd00851 MTH1175 This uncharact 24.4 2.2E+02 0.0047 18.8 4.8 40 13-55 53-92 (103)
199 PF04483 DUF565: Protein of un 24.4 66 0.0014 20.7 2.0 15 57-71 45-59 (60)
200 PF13676 TIR_2: TIR domain; PD 24.2 92 0.002 20.7 2.8 54 11-65 12-67 (102)
201 cd06594 GH31_glucosidase_YihQ 24.1 1.9E+02 0.0041 24.2 5.2 61 12-72 25-111 (317)
202 PRK12311 rpsB 30S ribosomal pr 23.9 1.9E+02 0.0041 24.8 5.2 65 21-86 30-97 (326)
203 COG1832 Predicted CoA-binding 23.8 2.4E+02 0.0052 21.4 5.2 32 53-87 79-110 (140)
204 COG0269 SgbH 3-hexulose-6-phos 23.8 2.6E+02 0.0057 22.7 5.7 48 11-58 94-141 (217)
205 COG1432 Uncharacterized conser 23.4 2.4E+02 0.0051 21.7 5.3 44 14-57 101-144 (181)
206 cd06600 GH31_MGAM-like This fa 23.3 1.8E+02 0.0039 24.2 4.9 62 12-73 26-106 (317)
207 PRK03659 glutathione-regulated 23.3 2.1E+02 0.0046 26.1 5.8 73 7-80 407-496 (601)
208 COG4070 Predicted peptidyl-pro 23.0 96 0.0021 27.8 3.3 54 9-63 322-390 (512)
209 cd06595 GH31_xylosidase_XylS-l 23.0 1.6E+02 0.0036 24.1 4.6 43 12-54 27-94 (292)
210 PF09413 DUF2007: Domain of un 22.9 2E+02 0.0043 17.9 4.8 55 9-65 9-63 (67)
211 cd08584 PI-PLCc_GDPD_SF_unchar 22.8 3.2E+02 0.0068 21.7 6.0 77 14-106 70-147 (192)
212 cd00338 Ser_Recombinase Serine 22.7 2.7E+02 0.0058 19.2 5.8 25 37-61 55-79 (137)
213 PF00165 HTH_AraC: Bacterial r 22.7 39 0.00085 19.3 0.6 13 122-134 30-42 (42)
214 PF02811 PHP: PHP domain; Int 22.5 2.9E+02 0.0064 19.6 5.5 45 11-55 17-63 (175)
215 PRK01261 aroD 3-dehydroquinate 22.5 4.2E+02 0.009 21.4 7.0 20 46-66 175-194 (229)
216 PF02606 LpxK: Tetraacyldisacc 22.4 4.2E+02 0.0092 22.4 7.1 48 13-64 240-294 (326)
217 PRK03673 hypothetical protein; 22.3 1.9E+02 0.0041 25.4 5.0 60 11-70 22-88 (396)
218 PF07745 Glyco_hydro_53: Glyco 22.3 2.4E+02 0.0051 24.2 5.5 47 56-108 56-111 (332)
219 PF04459 DUF512: Protein of un 21.9 4.1E+02 0.0089 21.1 6.8 95 34-134 84-190 (204)
220 TIGR00639 PurN phosphoribosylg 21.9 1.6E+02 0.0034 23.0 4.0 58 15-72 42-104 (190)
221 PRK08005 epimerase; Validated 21.8 3E+02 0.0066 21.9 5.7 40 33-72 67-107 (210)
222 COG1433 Uncharacterized conser 21.7 2E+02 0.0044 21.1 4.4 38 15-55 57-94 (121)
223 PRK10658 putative alpha-glucos 21.7 1.7E+02 0.0037 27.4 4.8 62 11-72 284-364 (665)
224 PF01297 TroA: Periplasmic sol 21.7 1.9E+02 0.0041 22.9 4.6 40 18-57 163-209 (256)
225 cd01450 vWFA_subfamily_ECM Von 21.6 2.9E+02 0.0062 19.2 5.8 22 36-57 121-142 (161)
226 TIGR03234 OH-pyruv-isom hydrox 21.5 3.9E+02 0.0084 20.8 6.4 46 9-54 38-104 (254)
227 cd05013 SIS_RpiR RpiR-like pro 21.4 1.2E+02 0.0025 20.7 3.0 69 10-84 26-96 (139)
228 cd00758 MoCF_BD MoCF_BD: molyb 21.4 2.4E+02 0.0052 20.2 4.8 26 13-38 22-47 (133)
229 cd06306 PBP1_TorT-like TorT-li 21.4 3.9E+02 0.0084 20.6 7.6 65 8-72 14-82 (268)
230 COG1184 GCD2 Translation initi 21.3 2.3E+02 0.0051 24.1 5.2 68 7-77 127-197 (301)
231 TIGR02667 moaB_proteo molybden 21.3 2.4E+02 0.0051 21.3 4.8 41 12-52 24-68 (163)
232 TIGR01652 ATPase-Plipid phosph 21.3 4.1E+02 0.0089 26.1 7.5 55 21-77 617-675 (1057)
233 PF03537 Glyco_hydro_114: Glyc 21.1 1.7E+02 0.0036 19.3 3.5 30 21-51 24-53 (74)
234 cd01391 Periplasmic_Binding_Pr 21.1 3.3E+02 0.0072 19.7 7.7 51 11-61 18-72 (269)
235 cd06272 PBP1_hexuronate_repres 20.9 3.7E+02 0.008 20.4 6.0 45 8-54 14-58 (261)
236 TIGR00262 trpA tryptophan synt 20.7 3.5E+02 0.0076 22.0 6.1 19 37-55 105-123 (256)
237 PLN02331 phosphoribosylglycina 20.6 1.5E+02 0.0032 23.6 3.7 58 16-73 42-104 (207)
238 PRK05299 rpsB 30S ribosomal pr 20.4 2.5E+02 0.0054 23.1 5.1 65 22-87 36-103 (258)
239 cd00886 MogA_MoaB MogA_MoaB fa 20.3 2E+02 0.0044 21.1 4.3 42 11-52 21-66 (152)
240 smart00828 PKS_MT Methyltransf 20.3 92 0.002 23.8 2.5 78 10-104 123-214 (224)
241 PTZ00331 alpha/beta hydrolase; 20.2 2.7E+02 0.006 21.7 5.2 8 77-84 173-180 (212)
242 TIGR01668 YqeG_hyp_ppase HAD s 20.2 3.1E+02 0.0068 20.4 5.3 41 17-57 18-69 (170)
No 1
>KOG1055|consensus
Probab=99.97 E-value=3.1e-31 Score=239.81 Aligned_cols=128 Identities=37% Similarity=0.721 Sum_probs=124.6
Q ss_pred hHHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 7 LMYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 7 ~fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
+|+..+++|+..+.+.+|++++.++|..||...+++|++.|+|||++.+++..|+++||+|||.+|||.+||||++|||.
T Consensus 193 ~f~~~~~dl~~~~~~~~ieiv~~qsf~~dp~~~vk~l~~~D~RiI~g~f~~~~Arkv~C~~Y~~~myg~ky~w~~~g~y~ 272 (865)
T KOG1055|consen 193 VFSSTLNDLEARLKEAGIEIVFRQSFSSDPADSVKNLKRQDARIIVGLFYETEARKVFCEAYKERLYGRKYVWFLIGWYA 272 (865)
T ss_pred hhcchHHHHHHhhhccccEEEEeeccccCHHHHHhhccccchhheeccchHhhhhHHHHhhchhhcccceeEEEEEEeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCC---CCCCCHHHHHHhhcceeEeeecccCCCCCcceeccchhhhhh
Q psy3581 87 ESWWNG---SLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVSTVLLS 134 (146)
Q Consensus 87 ~~Ww~~---~~~Ct~~qi~~a~~g~i~~~~~~~~~~~~~tiSG~T~~~~~~ 134 (146)
++||+. +.+||.+||.+|++|+++++..|++.++.+||||+|+.+|+.
T Consensus 273 d~w~ev~~~~~~ctveem~~A~eg~~s~e~~pl~~~~~~tisg~T~~~~l~ 323 (865)
T KOG1055|consen 273 DNWWEITHPSENCTVEEMTEAAEGHITTEFVMLSPANITTISGMTAQEFLE 323 (865)
T ss_pred cchhhccCchhhhhHHHHHHHHhhheeeeeeccccccceeeccchhHHHHH
Confidence 999976 258999999999999999999999999999999999999987
No 2
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=99.29 E-value=3.9e-11 Score=101.59 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|++.|++|+..+.+. .|+...|+++|. ++|||++..+...++.++|+|.++||.+++||||.++++..+
T Consensus 165 ~~~~~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~-~~~vIi~~~~~~~~~~i~~qa~~~g~~~~~y~~i~~d~~~~~ 243 (399)
T cd06384 165 SEGVFLALQEENANVSAHPYHIEKNSDIIEIIQFIKQ-NGRIVYICGPLETFLEIMLQAQREGLTPGDYVFFYLDVFGES 243 (399)
T ss_pred hHHHHHHHHhcCceEEEEEEeccchhhHHHHHHHHhh-cccEEEEeCCchHHHHHHHHHHHcCCCCCcEEEEEehhcccc
Confidence 4568888899999998866553 588999999997 999999999999999999999999999999999999998776
Q ss_pred ccCC--------CCCCCHHHHHHhhcceeEeee
Q psy3581 89 WWNG--------SLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 89 Ww~~--------~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
||.. ..+|..+++.+++++++.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~ 276 (399)
T cd06384 244 LRVKSPRESYKQMNHSSWTVLKEAFKSVFVITY 276 (399)
T ss_pred cccCCCCccccCCCCcccHHHHHHHhheEEeec
Confidence 6521 167999999999999988753
No 3
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=99.25 E-value=1.1e-10 Score=98.63 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
.++.|.+.|++.||+|+..+-+. .|....|++||+.. |||++..++..+++++|+|+++||++++|+||+++++..
T Consensus 164 ~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-~iii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~~~~~~ 242 (405)
T cd06385 164 AMEGLYMELKKNNITVVDLVFEEDDLINYTTLLQDIKQKG-RVIYVCCSPDIFRRLMLQFWREGLPSEDYVFFYIDLFGA 242 (405)
T ss_pred HHHHHHHHHHhCCeEEEEeeccCCchhhHHHHHHHHhhcc-eEEEEeCCHHHHHHHHHHHHHcCCCCCcEEEEEeecchh
Confidence 57889999999999998876442 36778999999865 999999999999999999999999999999999987532
Q ss_pred --------cccCCCCCCCHHHHHHhhcceeEee
Q psy3581 88 --------SWWNGSLPCPIEELVTALDGCILTD 112 (146)
Q Consensus 88 --------~Ww~~~~~Ct~~qi~~a~~g~i~~~ 112 (146)
.||... +=..+...+|+++++.+.
T Consensus 243 ~~~~~~~~~~w~~~-~~~~~~~~~a~~~v~~~~ 274 (405)
T cd06385 243 SLQGPDPKRPWYRG-DADDAAAREAFQSVKILT 274 (405)
T ss_pred hccCCCCCCCCCCC-CcccHHHHHhhheeEEEe
Confidence 344321 111235568899988763
No 4
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=99.23 E-value=8.7e-11 Score=101.03 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHhCCCeEEEee--ecchhH-----H-HHHHhhhc--CCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEE
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSH--SFSDEI-----S-TALAKLKE--TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQW 79 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~--sf~~d~-----~-~~l~~LK~--~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVW 79 (146)
..+++|.+.++++|+.|...+ .+.++| . .+++.|++ ++.|+||+++.++.|.++||+|+++||+|++|+|
T Consensus 152 ~~l~~l~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rviVl~~~~~~~~~ll~~a~~~gm~~~~y~w 231 (400)
T cd06391 152 RGIQEFLDKVSQQGMDVALQKVENNINKMITGLFRTMRIEELNRYRDTLRRAILVMNPATAKSFITEVVETNLVAFDCHW 231 (400)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCcchhhhhHHHHHHHHHHHHHhhcccccEEEEECCcHHHHHHHHHHHHcCCCCCCeEE
Confidence 456789999999999998744 222232 2 25677776 6779999999999999999999999999999999
Q ss_pred EEeccCCCcccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 80 LIIGMYSESWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 80 Il~gwy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
|++++.... .+= .+-....++|..++++
T Consensus 232 i~t~~~~~~-----~dl-~~~~~~~~~~v~~~r~ 259 (400)
T cd06391 232 IIINEEISD-----MDV-QELVRRSIGRLTIIRQ 259 (400)
T ss_pred EEeCccccc-----ccc-chHHhcccceEEEecc
Confidence 999996663 342 2334456777777775
No 5
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=99.20 E-value=4e-10 Score=94.77 Aligned_cols=101 Identities=12% Similarity=0.260 Sum_probs=79.1
Q ss_pred HHHHHHHhCCCeEEEeeecch---hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCccc
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSD---EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWW 90 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~---d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww 90 (146)
.+.+.++ .|++++..+.+.. |....+.+.+.+++|||++..+++.++.++|+|+++||++++|+||+++|+.+.||
T Consensus 161 ~~~~~~~-~~~~i~~~~~~~~~~~d~~~~~l~~~~~~~~vii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~~~~~~~~w 239 (391)
T cd06372 161 AVENQLK-FHFNITATVRYSSSNPDLLQEKLRYISSVARVIILICSSEDAKAILQAAEKLGLMKGKFVFFLLQQFEDNFW 239 (391)
T ss_pred HHHHHHh-hCEEEEEEEecCCCChHHHHHHHHhhhccceEEEEEcChHHHHHHHHHHHHcCCCCCCEEEEEehhhcCccc
Confidence 4445553 6899999988864 33334545556899999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCHHHHHHhhcceeEeeecc
Q psy3581 91 NGS-LPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 91 ~~~-~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
... .+...++..++++|.+.+....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~i~~~~ 265 (391)
T cd06372 240 KEVLTDDQVQHLPKVYESVFLIAPSS 265 (391)
T ss_pred cccCCCcchHHHHHHHhhEEEEecCC
Confidence 763 3333455667889988776654
No 6
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=99.16 E-value=6.7e-10 Score=91.52 Aligned_cols=105 Identities=35% Similarity=0.726 Sum_probs=93.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
++.+.+.+++.|++|+..+.+. .|...+|.+||+++.|||++..++..+..++++|.++||.+++|+||.++++.
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 231 (350)
T cd06366 152 LPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLS 231 (350)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHHHHHHHHHHcCCcCCCEEEEECcchh
Confidence 4678889999999999988885 37888999999999999999999999999999999999999999999999988
Q ss_pred CcccCCCCCCCHHHHHHhhcceeEeeecccC
Q psy3581 87 ESWWNGSLPCPIEELVTALDGCILTDLLPLS 117 (146)
Q Consensus 87 ~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~~ 117 (146)
..|+. ..+|..+++.++++|.+++......
T Consensus 232 ~~~~~-~~~~~~~~~~~~~~gv~~~~~~~~~ 261 (350)
T cd06366 232 SNWWS-SSDCTDEEMLEAMQGVIGVRSYVPN 261 (350)
T ss_pred hhhcc-CCCCChHHHHHhhceEEEEeecccc
Confidence 77754 4689999999999999988776543
No 7
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=99.14 E-value=6e-10 Score=94.36 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=81.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC-C
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS-E 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~-~ 87 (146)
++.|.+.+++.|++|...+.+. .|....|+++|+++ ||||+.++++.++.++|+|+++||++++||||.+++.. .
T Consensus 157 ~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d~~~~~ 235 (387)
T cd06386 157 LEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIELFNSS 235 (387)
T ss_pred HHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc
Confidence 7788999999999998876664 37889999999999 99999999999999999999999999999999999874 1
Q ss_pred c---c-cCC-CCCCCH-HHHHHhhcceeEeeec
Q psy3581 88 S---W-WNG-SLPCPI-EELVTALDGCILTDLL 114 (146)
Q Consensus 88 ~---W-w~~-~~~Ct~-~qi~~a~~g~i~~~~~ 114 (146)
. | |.. ...... +...++++|+..+.++
T Consensus 236 ~~~~~~w~~~~~~~~~~~~a~~~~~~v~~~~~~ 268 (387)
T cd06386 236 SYGDGSWKRGDKHDFEAKQAYSSLNTVTLLRTV 268 (387)
T ss_pred ccCCCCCccCCCcCHHHHHHHHhheEEeccCCC
Confidence 1 1 332 112222 4566788887665543
No 8
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=99.12 E-value=2.1e-10 Score=97.55 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=58.1
Q ss_pred cchhHHHHHHhhhcCCe-EEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc-ccCC------CCCCCHHH
Q psy3581 32 FSDEISTALAKLKETDV-RIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES-WWNG------SLPCPIEE 100 (146)
Q Consensus 32 f~~d~~~~l~~LK~~d~-RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~-Ww~~------~~~Ct~~q 100 (146)
..+++...|++||++++ |||+....++.++++||+|+++||+|++|+||+++|.... ||.. ++.|+.-+
T Consensus 169 ~~~~~~~~Lk~lk~~~~~rIIi~~s~~~~~~~il~qA~~lgm~~~~y~wilt~ld~~~~dl~~~~~~~~Nitgfrl~ 245 (368)
T cd06383 169 IIDEVREQIKRLRNLDIKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGNPDLGIYDDLSCQLRNASIFVTRPM 245 (368)
T ss_pred cchhHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHcCCcCCceEEEEcCCCchhhhhhhhccccCcEEEeecc
Confidence 44678899999999998 8888888889999999999999999999999999997665 7642 46665543
No 9
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=99.11 E-value=4.6e-10 Score=94.01 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhCC--CeEEEeeecc----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 11 AHNKLLAEMLDSG--IDVMVSHSFS----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 11 ~~~~L~~~l~~~n--i~v~~~~sf~----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.++++.+.+++.| ++|....... .|+..+|++||+++.|+||+..+++.+..++|+|+++||++++|+||+.+|
T Consensus 141 ~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~~ 220 (382)
T cd06380 141 RLQQLLDYLREKDNKWQVTARRVDNVTDEEEFLRLLEDLDRRKEKRIVLDCESERLNKILEQIVDVGKNRKGYHYILANL 220 (382)
T ss_pred HHHHHHHHHhccCCceEEEEEEecCCCcHHHHHHHHHHhhcccceEEEEECCHHHHHHHHHHHHHhhhcccceEEEEccC
Confidence 4567888899988 8887643332 378899999999999999999999999999999999999999999999999
Q ss_pred CCCccc
Q psy3581 85 YSESWW 90 (146)
Q Consensus 85 y~~~Ww 90 (146)
....|+
T Consensus 221 ~~~~~~ 226 (382)
T cd06380 221 GFDDID 226 (382)
T ss_pred Cccccc
Confidence 777765
No 10
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=99.05 E-value=3.4e-09 Score=89.75 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCC-eEEEEEEccH-----HHHHHHHHHHHHcCCCCCCeEEEE
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETD-VRIILGNFNE-----FWAKMIFCEAYRIGMIGRKYQWLI 81 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d-~RIIi~~~~~-----~~a~~vfC~AYklgm~g~~YVWIl 81 (146)
..+.|.+.|++.|++|+..+.+. +|.+.+|++||+++ +|||++..+. ..++.++|+|.++||++.+|+||.
T Consensus 148 ~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~ 227 (382)
T cd06371 148 TAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIP 227 (382)
T ss_pred HHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEE
Confidence 46788999999999999888886 47888999999998 7999998876 678899999999999999999999
Q ss_pred eccC--CCcc-cCC-CCCCCHHHHHHhhcceeEeeec
Q psy3581 82 IGMY--SESW-WNG-SLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 82 ~gwy--~~~W-w~~-~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
.+.. ...| |.. ...+..+++.+++++++.+...
T Consensus 228 ~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 264 (382)
T cd06371 228 YDTLLYSLPYRNVSYPALRNNSKLRRAYDAVLTITMD 264 (382)
T ss_pred eccccccCCCCCccccCCCCCHHHHHHhHhhEEEEec
Confidence 8753 2222 211 2334567888999998887543
No 11
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=99.02 E-value=2.3e-09 Score=87.82 Aligned_cols=99 Identities=25% Similarity=0.336 Sum_probs=86.5
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
...+.+.+.+++.|++|+..+.+. .|+...|++||++++|||++..++..+..++|+|+++|| +++|+|+..+|
T Consensus 175 ~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~~a~~~g~-~~~~~i~~~~~ 253 (348)
T cd06350 175 SGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLFCEAYKLGM-TGKYWIISTDW 253 (348)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHHHHhCC-CCeEEEEEccc
Confidence 345778899999999999999886 378889999999999999999999999999999999999 88999999898
Q ss_pred CCCcccCCCCCCCHHHHHHhhcceeEeeeccc
Q psy3581 85 YSESWWNGSLPCPIEELVTALDGCILTDLLPL 116 (146)
Q Consensus 85 y~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~ 116 (146)
+.+ .|+.++..++++|++++.+...
T Consensus 254 ~~~-------~~~~~~~~~~~~g~~~~~~~~~ 278 (348)
T cd06350 254 DTS-------TCLLLFTLDAFQGVLGFSGHAP 278 (348)
T ss_pred cCc-------cccccCCcceeeeEEEEEEEee
Confidence 766 3677778889999988776654
No 12
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=99.02 E-value=5.5e-09 Score=88.04 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMY 85 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy 85 (146)
.++.+.+.|++.|++|+.. .+. .|....|+++|++. |||++..++..++.++|+|+++||++++||||+++++
T Consensus 162 ~~~~~~~~~~~~g~~v~~~-~~~~~~~~~d~~~~l~~ik~~~-~vii~~~~~~~~~~~~~qa~~~g~~~~~yv~i~~~~~ 239 (396)
T cd06373 162 TLEGVYTVLKEENITVSDF-PFDEDKELDDYKELLRDISKKG-RVVIMCASPDTVREIMLAAHRLGLTSGEYVFFNIDLF 239 (396)
T ss_pred HHHHHHHHHhhcCceeeEE-eecCCccccCHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCcEEEEEEccc
Confidence 4678889999999998754 454 47888999999887 9999999999999999999999999999999999886
Q ss_pred CC-----cccCC-CCCCCHHHHHHhhcceeEeeec
Q psy3581 86 SE-----SWWNG-SLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 86 ~~-----~Ww~~-~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
.. .+|.. ......+...++++|++.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 274 (396)
T cd06373 240 GSSLYGGGPWWWERGDEDDEKAKEAYQALMTITLR 274 (396)
T ss_pred hhhhccCCCCcCCCCCcccHHHHHHHHHheEEecC
Confidence 43 34431 1223345666788888776543
No 13
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=99.00 E-value=2.9e-09 Score=89.30 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhCCC----eEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 11 AHNKLLAEMLDSGI----DVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 11 ~~~~L~~~l~~~ni----~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.++.+.+.+++.|+ +|+..+.|. .|.+..|++||++++|+|++..+++.+..++++|.++||+|++|+||+++
T Consensus 170 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~~~~~~~l~~qa~~~g~~~~~~~wi~t~ 249 (377)
T cd06379 170 AQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSASEDDAAVIYRNAGMLNMTGEGYVWIVSE 249 (377)
T ss_pred HHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCEEEEEec
Confidence 45778899999999 888888885 47888999999999999999999999999999999999999999999998
Q ss_pred c
Q psy3581 84 M 84 (146)
Q Consensus 84 w 84 (146)
+
T Consensus 250 ~ 250 (377)
T cd06379 250 Q 250 (377)
T ss_pred c
Confidence 6
No 14
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=98.98 E-value=3e-09 Score=90.41 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=50.3
Q ss_pred HHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 36 ISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 36 ~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
....++.||.+++|+||++..++.|.++||+|.++||+|++|+||++++....
T Consensus 182 ~~~~l~~lk~~~arViVl~~s~~~a~~if~~A~~~gm~g~~yvWI~t~~~~~~ 234 (362)
T cd06378 182 DARTQRQLKKLESQVILLYCSKEEAEYIFRAARSAGLTGPGYVWIVPSLVLGN 234 (362)
T ss_pred hHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHcCCcCCCeEEEecccccCC
Confidence 67889999999999999999999999999999999999999999999997765
No 15
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=98.93 E-value=2e-08 Score=83.93 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
.+.+.+.+++.|++|+..+.+. .|....|+++|+.+ |+|++..++..++.++++|.++||.+.+|+||.++++.
T Consensus 155 ~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~~~~~ 233 (389)
T cd06352 155 LEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RIIIMCGSSEDVRELLLAAHDLGLTSGDYVFILIDLFN 233 (389)
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEEehhc
Confidence 5678899999999999888776 35677899999998 99999999999999999999999999999999999888
Q ss_pred CcccCC------CCCCCHHHHHHhhcceeEeeecc
Q psy3581 87 ESWWNG------SLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 87 ~~Ww~~------~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
..+|.. +.+|+.+++.++++|++.+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 268 (389)
T cd06352 234 YSLPYQNSYPWERGDGDDEKAKEAYDAVLTITLRP 268 (389)
T ss_pred cccccCCCCCcccCCcccHHHHHHHHhheEEEecC
Confidence 876532 24788888999999998876543
No 16
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=98.87 E-value=2.7e-08 Score=80.35 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=81.7
Q ss_pred HhHHHHHHHHHhCCCeEEEe-eecc---hhHHHHHHhhhc--CCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 10 RAHNKLLAEMLDSGIDVMVS-HSFS---DEISTALAKLKE--TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~-~sf~---~d~~~~l~~LK~--~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
...+.+.+.+++.++.++.. .... .+....++.|++ .++|||+....+..++.++|+|+++||.+++|+||+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvvil~~~~~~~~~~l~~a~~~~~~~~~~~~i~~~ 215 (348)
T PF01094_consen 136 SLADSFQDLLRERGGICVAFISVVISSDSDAEELLKKLKEIKSGARVVILCSSPEDARQFLEAAYELGMTSGDYVWILTD 215 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHHTTTTSEEEEESBHHHHHHHHHHHHHTTTSSTTSEEEEET
T ss_pred ccchhhhhhhcccccceecccccccccccchhhhhhhhhhccccceeeeeecccccccccccchhhhhccccceeEEeec
Confidence 34678889999977776665 3332 355666666666 99999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 84 MYSESWWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 84 wy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
+....+| ...+...++.+|.+.+...+
T Consensus 216 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 242 (348)
T PF01094_consen 216 LDNSSFW-----QNNEDFREAFQGVLGFTPPP 242 (348)
T ss_dssp TTTTTHT-----STHCHHHCCHTTEEEEEEST
T ss_pred ccccccc-----cccccccccccceeeeeeec
Confidence 9877653 46778889999999887644
No 17
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=98.86 E-value=1.2e-08 Score=84.96 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhCCCe--EEEeeecch----hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 11 AHNKLLAEMLDSGID--VMVSHSFSD----EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~--v~~~~sf~~----d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.++.+.+.+++.|++ +...+.+.. +....+..||+.++|+|++..+...++.++++|.++||++++|+||+++.
T Consensus 152 ~~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~ 231 (362)
T cd06367 152 FLDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKKLESRVILLYCSKEEAERIFEAAASLGLTGPGYVWIVGEL 231 (362)
T ss_pred HHHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHHcCCCCCCcEEEECcc
Confidence 466788899999988 766666542 56778999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy3581 85 YS 86 (146)
Q Consensus 85 y~ 86 (146)
..
T Consensus 232 ~~ 233 (362)
T cd06367 232 AL 233 (362)
T ss_pred cc
Confidence 54
No 18
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=98.74 E-value=1.5e-07 Score=79.92 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhCCCeEEEeeecch----------hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCC-CCCeEE
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSD----------EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMI-GRKYQW 79 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~----------d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~-g~~YVW 79 (146)
.++.+.+.|++.|++|+..+.|.. |....|+++|. ++||+++..+...++.++|+|.++||. +.+|+|
T Consensus 152 ~~~~~~~~~~~~g~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~~~~~~~~~~~l~qa~~~g~~~~~~y~~ 230 (404)
T cd06370 152 VFETLKEEAELRNITISHVEYYADFYPPDPIMDNPFEDIIQRTKE-TTRIYVFIGEANELRQFLMSMLDEGLLESGDYMV 230 (404)
T ss_pred HHHHHHHHHHHcCCEEEEEEEECCCCCchhhhHHHHHHHHHhccC-CCEEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 456788899999999999888863 33455777766 478888888888899999999999999 689999
Q ss_pred EEec--cCCCcccCC----------CCCCC-HHHHHHhhcceeEeeecc
Q psy3581 80 LIIG--MYSESWWNG----------SLPCP-IEELVTALDGCILTDLLP 115 (146)
Q Consensus 80 Il~g--wy~~~Ww~~----------~~~Ct-~~qi~~a~~g~i~~~~~~ 115 (146)
|..+ ++..++|.. ..+|+ .++..++++|++.+.+.+
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 279 (404)
T cd06370 231 LGVDIEYYDRDSQDYYSLHRGFQSREYNRSDDEKALEAMKSVLIIVPTP 279 (404)
T ss_pred EEEchhhccccchhhhhhhhhhccccccccccHHHHHHhHheEEEecCC
Confidence 9855 444443321 23555 457778999998876544
No 19
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=98.72 E-value=1.2e-07 Score=82.41 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcC--CeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKET--DVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~--d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.++.+.+.+++.||+|+..+.+. .|...+|++||++ |+|||++...+..++.++++|.++||. ++|+||.++
T Consensus 202 ~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~-~~~~wi~s~ 280 (472)
T cd06374 202 GMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVG-GEFQLIGSD 280 (472)
T ss_pred HHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEEEEechHHHHHHHHHHHHhcCC-CceEEEEec
Confidence 45778899999999999888773 3677899999964 899999888888899999999999986 668999875
Q ss_pred cCCCcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 84 MYSESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 84 wy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
. |+. .+|..+...++++|.+++...
T Consensus 281 ~----~~~--~~~~~~~~~~~~~G~l~~~~~ 305 (472)
T cd06374 281 G----WAD--RDDVVEGYEEEAEGGITIKLQ 305 (472)
T ss_pred c----ccc--chHhhhcchhhhheeEEEEec
Confidence 3 431 256677788899999988654
No 20
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=98.68 E-value=1.9e-07 Score=79.38 Aligned_cols=98 Identities=10% Similarity=0.200 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YS 86 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~ 86 (146)
.++.|.+.+++.|+.|...+.+. +|....|+++|.++.|+||++..++.+..++=+|-+.+|++.+|+||++.. +.
T Consensus 132 ~lq~l~~~~~~~~~~I~~~~~~~~~~~d~~~~L~~ik~~~~rvIVl~~~~~~~~~~L~~a~~~~~~~~gy~wI~t~l~~~ 211 (364)
T cd06390 132 VLQKVLDTAAEKNWQVTAVNILTTTEEGYRKLFQDLDKKKERLIVVDCESERLNAILNQIIKLEKNGIGYHYILANLGFM 211 (364)
T ss_pred HHHHHHHhhhccCceeeEEEeecCChHHHHHHHHhccccCCeEEEEECCHHHHHHHHHHHHHhhccCCceEEEecCCCcc
Confidence 45788899999999998766654 478889999999999999999999899999999999999999999999982 21
Q ss_pred CcccCCCCCCCHHHHHHhhcceeEeeeccc
Q psy3581 87 ESWWNGSLPCPIEELVTALDGCILTDLLPL 116 (146)
Q Consensus 87 ~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~ 116 (146)
+ =..+++...++|..+++.+..
T Consensus 212 ~--------~~~~~~~~~~~nitg~r~~~~ 233 (364)
T cd06390 212 D--------IDLTKFRESGANVTGFQLVNY 233 (364)
T ss_pred c--------ccHHHHhcCCcCceEEEEecC
Confidence 1 134677788999999887754
No 21
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=98.66 E-value=1.4e-07 Score=80.93 Aligned_cols=113 Identities=16% Similarity=0.228 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhc-CCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKE-TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~-~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.++.+.+.+++.|++|+..+.+. .|....|++||+ +++|||++..++..+..++++|.++||. .+|+||..+
T Consensus 188 ~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil~~~~~~~~~~~~~a~~~g~~-~~~~~i~~~- 265 (452)
T cd06362 188 GIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVLFCREDDIRGLLAAAKRLNAE-GHFQWIASD- 265 (452)
T ss_pred HHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEEEcChHHHHHHHHHHHHcCCc-CceEEEEec-
Confidence 45778899999999999888875 366778999987 5899999999999999999999999998 578999863
Q ss_pred CCCcccCCCCCCCHHHHHHhhcceeEeeecccCCC-CCcceeccchh
Q psy3581 85 YSESWWNGSLPCPIEELVTALDGCILTDLLPLSTS-GEITVSGIVST 130 (146)
Q Consensus 85 y~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~~~~-~~~tiSG~T~~ 130 (146)
.|+.... -.+.+..+++|++++.+...... -...+.++||.
T Consensus 266 ---~~~~~~~--~~~~~~~~~~g~~~~~~~~~~i~~f~~~l~~l~~~ 307 (452)
T cd06362 266 ---GWGARNS--VVEGLEDVAEGAITIELQSAEVPGFDEYFLSLTPE 307 (452)
T ss_pred ---cccccch--hhcccccccceEEEEEecccccccHHHHhhhCCcC
Confidence 3432211 12556688999988776554332 23445556554
No 22
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=98.64 E-value=2.1e-07 Score=75.63 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=66.1
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecc--hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFS--DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~--~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
...+.+.+.++++|++|+..+... +|.+..|.+||++++++|++..+++.+..++++|.++||.++.|+||+++.-.
T Consensus 141 ~~l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~d~Vi~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~ 219 (324)
T cd06368 141 LRLQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIKREKERRIILDCSPERLKEFLEQAVEVGMMSEYYHYILTNLDF 219 (324)
T ss_pred HHHHHHHHhhccCCceEEEEEecCCchHHHHHHHHHhhccCceEEEECCHHHHHHHHHHHHHhccccCCcEEEEccCCc
Confidence 345667778888899998766444 35888999999999999999999999999999999999999999999988633
No 23
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=98.62 E-value=3.2e-07 Score=71.69 Aligned_cols=93 Identities=28% Similarity=0.395 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecch---hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSD---EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~---d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
..+.+.+.+++.|+++...+.+.. +....++.||+++.|||+....+..+..++++|.++||+ .+|+||+++--..
T Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~-~~~~~i~~~~~~~ 234 (298)
T cd06269 156 LLELLEEELEKNGICVAFVESIPDGSEDIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGMM-TGYHWIITDLWLT 234 (298)
T ss_pred HHHHHHHHHHHCCeeEEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCCC-CCeEEEEEChhhc
Confidence 345677788889999999999884 688899999999999999999999999999999999999 8899998864221
Q ss_pred cccCCCCCCCHHHHHHhhcceeEe
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILT 111 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~ 111 (146)
+|...+..+...+.++.
T Consensus 235 -------~~~~~~~~~~~~~~~~~ 251 (298)
T cd06269 235 -------SCLDLELLEYFPGNLTG 251 (298)
T ss_pred -------cccccCCccccceEEEE
Confidence 14555555555555443
No 24
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=98.58 E-value=4e-07 Score=78.88 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCCeEEEee-------ecch----hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSH-------SFSD----EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWL 80 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~-------sf~~----d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWI 80 (146)
.++|.+.+.+.+.+|.... .|.. .-...|.++++++ |.||++..++.|.++|-+|-++||++.+|+||
T Consensus 154 lq~L~~~~~~~~~~I~~~~v~~~~~~~~~~~l~~~~~~~L~~~~~~~-r~iVv~~s~~~~~~il~qA~~lgM~~~~y~wI 232 (400)
T cd06392 154 LQSFLDQASRLGLDVSLQKVDRNISRVFTNLFTTMKTEELNRYRDTL-RRAILLLSPRGAQTFINEAVETNLASKDSHWV 232 (400)
T ss_pred HHHHHHHHhhcCceEEEEEcccCcchhhhhHHHHHHHhhhhhccccc-eEEEEEcCcHHHHHHHHHHHHhCcccCCeEEE
Confidence 5678889999999997655 1332 2234567777777 88888999999999999999999999999999
Q ss_pred EeccCCCcccCCCCCCCHHHHHHhhcceeE----eeec
Q psy3581 81 IIGMYSESWWNGSLPCPIEELVTALDGCIL----TDLL 114 (146)
Q Consensus 81 l~gwy~~~Ww~~~~~Ct~~qi~~a~~g~i~----~~~~ 114 (146)
+++|... +-++.+.++|.++ ++.+
T Consensus 233 ~t~~~~~----------~~dl~~~~~g~~~niT~~r~~ 260 (400)
T cd06392 233 FVNEEIS----------DTEILELVHSALGRMTVIRQI 260 (400)
T ss_pred EecCCcc----------cccHHHHhcccccceeeEEEe
Confidence 9999554 2355566677665 6665
No 25
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=98.56 E-value=4.7e-07 Score=79.01 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecch-------hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEe
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSD-------EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLII 82 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~-------d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~ 82 (146)
..++.|.+.+++.||.|+..+.+.. +....|++||++++||||+..++..++.+|++|.+++++| ++||..
T Consensus 187 ~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arvIvl~~~~~~~~~l~~~~~~~~~~~--~~wi~s 264 (469)
T cd06365 187 QFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKVIIIYGDTDSLLEVSFRLWQYLLIG--KVWITT 264 (469)
T ss_pred HHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeEEEEEcCcHHHHHHHHHHHHhccCc--eEEEee
Confidence 3467899999999999999887763 3456789999999999999999999999999999998765 999987
Q ss_pred -ccCCCcccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 83 -GMYSESWWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 83 -gwy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
+|.... . ...-..++++|++++.+..
T Consensus 265 ~~w~~~~------~-~~~~~~~~~~G~lg~~~~~ 291 (469)
T cd06365 265 SQWDVTT------S-PKDFTLNSFHGTLIFSHHH 291 (469)
T ss_pred ccccccc------c-ccccccceeeEEEEEEecc
Confidence 443331 0 1123447899999988654
No 26
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=98.53 E-value=5.4e-07 Score=76.11 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
+++.+.+++.|++|.. +.+. .|...+|++||+.+.+.||+..++..+..++++|.++||.++.|+|++++.
T Consensus 156 ~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~~~~~~~~~ 229 (384)
T cd06393 156 QELIMAPSRYNIRLKI-RQLPTDSDDARPLLKEMKRGREFRIIFDCSHQMAAQILKQAMAMGMMTEYYHFIFTTL 229 (384)
T ss_pred HHHHHhhhccCceEEE-EECCCCchHHHHHHHHHhhcCceEEEEECCHHHHHHHHHHHHHhccccCceEEEEccC
Confidence 4677778889999976 5565 478899999999999988899999999999999999999999999998775
No 27
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=98.43 E-value=3e-06 Score=72.60 Aligned_cols=72 Identities=11% Similarity=0.208 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
..++|.+.++..++.|... .+. ++.+..|+.|+.++.|.||+++.++.|.++|-+|-.+||++++|+||++.
T Consensus 139 ~Lq~L~~~~~~~~~~V~~~-~v~~~~~~~~~~~~l~el~~~~~r~iIld~s~~~~~~il~~a~e~gM~~~~y~~ilt~ 215 (372)
T cd06387 139 ILQAIMEAAVQNNWQVTAR-SVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLAN 215 (372)
T ss_pred HHHHHHHhhccCCceEEEE-EeccCCchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHcCccccceEEEEec
Confidence 3567888899999988544 332 35677899999999999999999999999999999999999999999997
No 28
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=98.40 E-value=1.8e-06 Score=73.38 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCeEEEeee--c-chhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHS--F-SDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~s--f-~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.++|.+.++++|++|+..+. + ..|.+.+|+++|+++.+.||+..+++.|..++=+|-++||.+++|.||+.+.
T Consensus 140 lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 215 (371)
T cd06388 140 LQAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANL 215 (371)
T ss_pred HHHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccC
Confidence 67888999999999987433 3 3588999999999999999999999999999999999999999999999774
No 29
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=98.39 E-value=2.6e-06 Score=73.16 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchh----------HHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEE
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDE----------ISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWL 80 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d----------~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWI 80 (146)
.++.+.+.+++.||.|+..+.|... ....++.+|++++|+|++..+...+..++++|.++|| +++||
T Consensus 188 ~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~---~~~wi 264 (403)
T cd06361 188 ALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKAIERNI---NKVWI 264 (403)
T ss_pred HHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCC---CeEEE
Confidence 4567889999999999999888631 2234566899999999999999999999999999999 69999
Q ss_pred EeccCCCcccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 81 IIGMYSESWWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 81 l~gwy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
..+ .|.... .=.......++.|.|++.+..
T Consensus 265 gs~----~w~~~~-~~~~~~~~~~~~g~ig~~~~~ 294 (403)
T cd06361 265 ASD----NWSTAK-KILTDPNVKKIGKVVGFTFKS 294 (403)
T ss_pred EEC----cccCcc-ccccCCcccccceEEEEEecC
Confidence 754 453211 001111124667777776633
No 30
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=98.37 E-value=2.2e-06 Score=72.57 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=64.2
Q ss_pred HHHHHHHHHhCCCeEEEee----ecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 12 HNKLLAEMLDSGIDVMVSH----SFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~----sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
+++|.+.++++|++|...+ +.. .|.+..|++||+++.|.|++..+++.+..++=+|-++||.++.|+||+.+.
T Consensus 134 lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 213 (370)
T cd06389 134 LQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANL 213 (370)
T ss_pred HHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHhCccccceEEEEccC
Confidence 5678889999999987544 332 378899999999999999999999999999999999999999999999874
No 31
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=98.36 E-value=3.1e-06 Score=68.10 Aligned_cols=95 Identities=28% Similarity=0.389 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCe-EEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDV-RIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~-RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
+++.+.....+..+.. ..+. +|....|+.+|++++ |||+....++.+..+|.+|.++||++++|+||++++-...
T Consensus 149 ~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~l~~~~~~~vil~~~~~~~~~~~l~~a~~~gm~~~~~~~i~~~~~~~~ 227 (328)
T cd06351 149 QELLDESGIKGIQVTV-RRLDLDDDNYRQLLKELKRSESRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTNLDLSD 227 (328)
T ss_pred HHHHHhhcccCceEEE-EEecCCchhHHHHHHHHhhcccceEEEECCcHHHHHHHHHHHHHhccccCCcEEEEecCCccc
Confidence 3444444444444443 3443 247889999999999 8888877779999999999999999999999999985542
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
. ..+.......|.++++...
T Consensus 228 -----~--d~~~~~~~~~~i~g~~~~~ 247 (328)
T cd06351 228 -----I--DLEPFQYGPANITGFRLVD 247 (328)
T ss_pred -----c--chhhhccCCcceEEEEEeC
Confidence 1 1234445556666666554
No 32
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=98.35 E-value=3.3e-06 Score=69.09 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCC---eEEEeeecch--hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 13 NKLLAEMLDSGI---DVMVSHSFSD--EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 13 ~~L~~~l~~~ni---~v~~~~sf~~--d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
..+.+.+++.+. .|. .+.+.. |.+.+|.+||++++++|++..++..+..++++|.++||.++.|+|+++++-..
T Consensus 143 ~~l~~~~~~~~~~g~~v~-~~~~~~~~d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~ 221 (327)
T cd06382 143 LRLQELLQAFGISGITIT-VRQLDDDLDYRPLLKEIKNSGDNRIIIDCSADILIELLKQAQQVGMMSEYYHYIITNLDLH 221 (327)
T ss_pred HHHHHHHHhhccCCCeEE-EEEccCCccHHHHHHHHHhcCceEEEEECCHHHHHHHHHHHHHhCccccceEEEEecCCcc
Confidence 345566666665 443 355543 78999999999999999999999999999999999999999999999888433
No 33
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=98.30 E-value=9.4e-06 Score=70.76 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhCCCeEEEeeecch-----hHHHHHHhhhc-CCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec-
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSD-----EISTALAKLKE-TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG- 83 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~-----d~~~~l~~LK~-~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g- 83 (146)
.++.+.+.+++.|+.|+..+.+.. |....|++||. +++||||+..++..++.++++|.++|+. ++||..+
T Consensus 190 ~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~~~~~~~~ll~~a~~~g~~---~~wigs~~ 266 (458)
T cd06375 190 GIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFTRSEDARELLAAAKRLNAS---FTWVASDG 266 (458)
T ss_pred HHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEecChHHHHHHHHHHHHcCCc---EEEEEecc
Confidence 457788889999999999888852 56677889875 6999999999999999999999999997 8999764
Q ss_pred cCCCcccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 84 MYSESWWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 84 wy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
|.... . ..+....+++|+|++.+..
T Consensus 267 ~~~~~----~---~~~~~~~~~~G~i~~~~~~ 291 (458)
T cd06375 267 WGAQE----S---IVKGSEDVAEGAITIELAS 291 (458)
T ss_pred ccccc----h---hhhccchhhceEEEEEecc
Confidence 32221 0 0111335789998877643
No 34
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=98.29 E-value=4.5e-06 Score=70.54 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=51.9
Q ss_pred hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 34 DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
.|...+|++||+++.|+||++.+++.|..+|=+|-++||+++.|+||++++...
T Consensus 173 ~d~~~~L~~ik~~~~~~iVv~~~~~~a~~il~qa~~lGm~~~~y~~i~T~l~~~ 226 (333)
T cd06394 173 RDPTPLLKEIRDDKTATIIIDANASMSHTILLKASELGMTSAFYKYILTTMDFP 226 (333)
T ss_pred ccHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHHHcCCCCCceEEEEecCCcc
Confidence 478999999999999999999999999999999999999999999999999777
No 35
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=98.21 E-value=1.1e-05 Score=69.87 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhCC-CeEEEeeecc-----hhHHHHHHhhhc-CCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 11 AHNKLLAEMLDSG-IDVMVSHSFS-----DEISTALAKLKE-TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 11 ~~~~L~~~l~~~n-i~v~~~~sf~-----~d~~~~l~~LK~-~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.++.+.+.+++.| +.|...+.+. .|...+|++||+ +++|+|++..+...+..++++|.++||.| +|+||..+
T Consensus 188 ~~~~~~~~~~~~g~~~v~~~~~i~~~~~~~d~~~~l~~ik~~~~~~vIvl~~~~~~~~~ll~~a~~~~~~g-~~~wig~d 266 (463)
T cd06376 188 GVEAFTQISREAGGVCIAQSIKIPREPRPGEFDKIIKRLLETPNARAVIIFANEDDIRRVLEAAKRANQVG-HFLWVGSD 266 (463)
T ss_pred HHHHHHHHHHHcCCceEEEEEecCCCCCHHHHHHHHHHHhccCCCeEEEEecChHHHHHHHHHHHhcCCcC-ceEEEEec
Confidence 3466777888865 5665554442 367788999987 79999999999999999999999999998 69999876
Q ss_pred cCCCcccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 84 MYSESWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 84 wy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
..... ..=+. ....+++|.+++.+
T Consensus 267 ~~~~~-----~~~~~-~~~~~~~G~~~~~~ 290 (463)
T cd06376 267 SWGAK-----ISPIL-QQEDVAEGAITILP 290 (463)
T ss_pred ccccc-----ccccc-cCcceeeeEEEEEe
Confidence 42221 00000 12346788887754
No 36
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=98.18 E-value=1.2e-05 Score=71.27 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec-c
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG-M 84 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g-w 84 (146)
.++.+.+.+++.||.|+..+.+. .|....|.+||++++|+||+......+..++++|.++|+.| .+||..+ |
T Consensus 203 ~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~~~~~~~~ll~qa~~~g~~~--~iwI~s~~w 280 (510)
T cd06364 203 GIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFSSGPDLEPLIKEIVRRNITG--KIWLASEAW 280 (510)
T ss_pred HHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEeCcHHHHHHHHHHHHhCCCC--cEEEEEchh
Confidence 45678889999999998877554 35667899999999999999999999999999999999987 5999764 5
Q ss_pred CCCcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 85 YSESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 85 y~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
.... .-...+..+++.|.+++...
T Consensus 281 ~~~~------~~~~~~~~~~~gg~lg~~~~ 304 (510)
T cd06364 281 ASSS------LIAMPEYFDVMGGTIGFALK 304 (510)
T ss_pred hccc------ccccCCccceeeEEEEEEEC
Confidence 3331 22333556788888876553
No 37
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=98.02 E-value=4.5e-05 Score=64.99 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCCeEEEeeecc------hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS------DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~------~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.+.+.+.+++.|++|+..+.+. .|...+|.+||.+++++|++..+++.+..++++|.++||.++ +||..+
T Consensus 193 ~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~~il~qa~~~g~~~~--~~i~~~ 268 (410)
T cd06363 193 LQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAEAFFNSVIQQNLTGK--VWIASE 268 (410)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHhcCCCCC--EEEEeC
Confidence 5778899999999999988874 478889999999999999999999999999999999999765 788753
No 38
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=98.01 E-value=7.8e-05 Score=58.04 Aligned_cols=98 Identities=18% Similarity=0.114 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++++....+. ++....++.+++++.++|++...+..+..++.++.++|+. +++.||..+.....
T Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~-~~~~~i~~~~~~~~ 231 (299)
T cd04509 153 LEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGLT-GGYPILGITLGLSD 231 (299)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcCCC-CCCcEEecccccCH
Confidence 4567788899999998766665 4677889999998999999999989999999999999999 89999998764443
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeecccC
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLLPLS 117 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~~ 117 (146)
++ .+.+.++++|.++..+.+..
T Consensus 232 ~~-------~~~~~~~~~g~~~~~~~~~~ 253 (299)
T cd04509 232 VL-------LEAGGEAAEGVLTGTPYFPG 253 (299)
T ss_pred HH-------HHHhHHhhcCcEEeeccCCC
Confidence 22 14566788999887766543
No 39
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=97.65 E-value=0.00076 Score=55.21 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++|+..+.+. +|.+.++.+|++.++++|++...+..+..++.++.+.|+..+ .++...+++.+.
T Consensus 158 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 236 (345)
T cd06338 158 AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQMKELGYNPK-ALYMTVGPAFPA 236 (345)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCCC-EEEEecCCCcHH
Confidence 4667788999999999887775 588899999999999999999999999999999999999654 555544443332
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
..+++-.+++|++.+.+..
T Consensus 237 --------~~~~~g~~~~g~~~~~~~~ 255 (345)
T cd06338 237 --------FVKALGADAEGVFGPTQWT 255 (345)
T ss_pred --------HHHHHhhhhCceeecceec
Confidence 3455666788988766543
No 40
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=97.49 E-value=0.0018 Score=55.16 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHH---HHH-Hhh-----h--cCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIS---TAL-AKL-----K--ETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWL 80 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l-~~L-----K--~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWI 80 (146)
.+++.+.+++.|+.+.. .....|.. ..+ +.+ + ..+.|.||++..++.+..+|=+|-++||++++|.||
T Consensus 154 l~~~~~~~~~~g~~v~~-~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~vIl~~~~~~~~~~l~~a~~~gm~~~~~~wi 232 (363)
T cd06381 154 LQEFLDQLSRQGIDVLL-QKVDLNISKMATALFTTMRCEELNRYRDTLRRALLLLSPNGAYTFIDASVETNLAIKDSHWF 232 (363)
T ss_pred HHHHHHHHHhcCceEEE-EecccccchhhhhhhhHHHHHHHHhhcccceEEEEEcCcHHHHHHHHHHHHcCCCcCceEEE
Confidence 45677788889986653 33332221 111 211 1 335556677999999999999999999999999998
Q ss_pred EeccCCCcccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 81 IIGMYSESWWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 81 l~gwy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
+.+..... +=.-+.......|..+++.+.
T Consensus 233 ~~~~l~~~------~~~l~~~~~~~~nitgfrl~~ 261 (363)
T cd06381 233 LINEEISD------TEIDELVRYAHGRMTVIRQTF 261 (363)
T ss_pred Eecccccc------chhhHHHhhcCccEEEEEEec
Confidence 64432221 112346667788888888765
No 41
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.42 E-value=0.0013 Score=53.67 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=68.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~~ 87 (146)
++.+.+.+++.|++|+..+.+. .|...+|.+||+.+.++|++..++..+..+++++.++|+-. .|+..+. +.+
T Consensus 154 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~---~~~~~~~~~~~ 230 (312)
T cd06346 154 ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYEQGLFD---KFLLTDGMKSD 230 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCCCC---ceEeeccccCh
Confidence 3567788999999999988886 58899999999999999999999999999999999999943 3665432 222
Q ss_pred cccCCCCCCCHHHHHHhhcceeEee
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTD 112 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~ 112 (146)
.+ ..+....+++|.+.+.
T Consensus 231 ~~-------~~~~~~~~~~g~~~~~ 248 (312)
T cd06346 231 SF-------LPADGGYILAGSYGTS 248 (312)
T ss_pred HH-------HHhhhHHHhCCcEEcc
Confidence 11 1111125678887654
No 42
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=97.41 E-value=0.0018 Score=52.45 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~~ 87 (146)
.+.+.+.+++.|++|+..+.+. .|....|.++++.+.++|+...+...+..++++|.++|+. +.||...+ +.+
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~ 228 (334)
T cd06342 152 ADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQLGLK---APFMGGDGLCDP 228 (334)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHHHHHcCCC---CcEEecCccCCH
Confidence 4667788899999999998886 5788999999999999999998999999999999999984 46665432 222
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
.+ .+..-.+++|++.+.+..
T Consensus 229 ~~--------~~~~~~~~~g~~~~~~~~ 248 (334)
T cd06342 229 EF--------IKIAGDAAEGTYATFPGG 248 (334)
T ss_pred HH--------HHHhhHhhCCcEEEecCC
Confidence 11 122235788887766554
No 43
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=97.37 E-value=0.0016 Score=53.85 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++|+..+.|. .|...++.+|++.++++|+...+...+..++.+|.+.|+.++ .++...+++.+.
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~ 239 (347)
T cd06340 161 AEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEPK-AVYSVGGGAEDP 239 (347)
T ss_pred HHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCCc-EEEecCCCcCcH
Confidence 4567778999999999888886 589999999999999999999999999998888899999654 444444444332
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
- ..+.+-.+++|.+...+.
T Consensus 240 ~-------~~~~~g~~~~g~~~~~~~ 258 (347)
T cd06340 240 S-------FVKALGKDAEGILTRNEW 258 (347)
T ss_pred H-------HHHHhhHhhheEEecccc
Confidence 1 234455678898877544
No 44
>KOG4440|consensus
Probab=97.23 E-value=0.00071 Score=62.22 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=47.4
Q ss_pred hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 34 DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.+.+..|-..|+..+|+|+.....+.|.++|-.|-.++|+|++||||+..-
T Consensus 211 ~~~t~~l~~~k~~~~rv~~~~as~dDA~~ifr~Ag~lnmTG~G~VWiV~E~ 261 (993)
T KOG4440|consen 211 KNVTALLMEAKELEARVIILSASEDDAATIFRAAGMLNMTGSGYVWIVGER 261 (993)
T ss_pred chHHHHHhhhhhhhheeEEeecccchHHHHHHhhhhhcccCceEEEEEecc
Confidence 467788899999999999999999999999999999999999999999754
No 45
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.23 E-value=0.0041 Score=51.04 Aligned_cols=94 Identities=10% Similarity=0.146 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
..+.+.+.+++.|++|+..+.+. +|...++.+||+.++.+|++...+..+..++.+|.+.|+.++ |+...+...
T Consensus 153 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~ 229 (344)
T cd06348 153 ETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQLRELGYNGL---IVGGNGFNT 229 (344)
T ss_pred HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCCc---eeccccccC
Confidence 34678889999999999988885 578899999999999999999999999999999999999763 343322111
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
. + ..+.+-++.+|++...+.
T Consensus 230 ~------~-~~~~~g~~~~g~~~~~~~ 249 (344)
T cd06348 230 P------N-VFPVCQAACDGVLVAQAY 249 (344)
T ss_pred H------H-HHHhhhHhhcCeEEEeec
Confidence 0 0 123344678898766554
No 46
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=97.11 E-value=0.0038 Score=51.16 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
...+.+.+++.|++|+..+.+. +|...++.+||+.+..+|++..+...+..++.++.++|+.++.+++. ....+.
T Consensus 152 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~ 229 (334)
T cd06327 152 ERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEFGLTKGQKLAG--LLLFLT 229 (334)
T ss_pred HHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHHHHhCCccCCcEEE--ecccHH
Confidence 4667788999999999888775 58899999999999999999999999999999999999985433332 111111
Q ss_pred ccCCCCCCCHHHH-HHhhcceeEeeeccc
Q psy3581 89 WWNGSLPCPIEEL-VTALDGCILTDLLPL 116 (146)
Q Consensus 89 Ww~~~~~Ct~~qi-~~a~~g~i~~~~~~~ 116 (146)
.-.++ -++++|++...+.+.
T Consensus 230 --------~~~~~~~~~~~g~~~~~~~~~ 250 (334)
T cd06327 230 --------DVHSLGLDAAQGLYLTTAWYW 250 (334)
T ss_pred --------HHHhhchhhhcCeEEeeeccc
Confidence 11222 246889877665543
No 47
>KOG1053|consensus
Probab=97.01 E-value=0.0015 Score=61.92 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=43.5
Q ss_pred HHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 38 TALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 38 ~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
.....||..++.||+..-.-+.|..+|-+|-+.||+|++|+||+|.--..
T Consensus 222 ~~q~qLkki~a~VillyC~~eea~~IF~~A~q~Gl~g~~y~Wi~pqlv~g 271 (1258)
T KOG1053|consen 222 KLQAQLKKIQAPVILLYCSREEAERIFEEAEQAGLTGPGYVWIVPQLVEG 271 (1258)
T ss_pred HHHHHHHhcCCcEEEEEecHHHHHHHHHHHHhcCCcCCceEEEeehhccC
Confidence 34566777789999999999999999999999999999999999866443
No 48
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.67 E-value=0.023 Score=45.83 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++++..+.+. .|....++++++.+.++|++.........++.+|.+.|+. -.|+..+
T Consensus 153 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~---~~i~~~~----- 224 (334)
T cd06347 153 AKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQARELGIK---VPILGGD----- 224 (334)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHHHHcCCC---CcEEecc-----
Confidence 3567788889999999988874 4788899999999999999999999888888888888873 3455432
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
.|.... .......+++|.....++
T Consensus 225 ~~~~~~--~~~~~~~~~~g~~~~~~~ 248 (334)
T cd06347 225 GWDSPK--LEEAGGAAAEGVYFTTHF 248 (334)
T ss_pred cccCHH--HHHHHHHHhCCcEEeccc
Confidence 121100 012334678887665543
No 49
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.65 E-value=0.018 Score=48.31 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++|+..+.+. .|...++.++|+.+..++++..+...+..++.++.++|+..+ |+...+..+
T Consensus 157 ~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~- 232 (351)
T cd06334 157 IEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVGLDDK---FIGNWWSGD- 232 (351)
T ss_pred HHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHcCCCce---EEEeeccCc-
Confidence 3557788999999999988886 589999999999999999999999999999999999999432 443333211
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
.=..+.+-.+++|++.+.+.+
T Consensus 233 ------~~~~~~~g~~~~g~~~~~~~~ 253 (351)
T cd06334 233 ------EEDVKPAGDAAKGYKGVTPFA 253 (351)
T ss_pred ------HHHHHHhhhhhcCcEEeeccc
Confidence 113344446788987765544
No 50
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.64 E-value=0.0081 Score=49.73 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHH-HHHHHHHHHHHcCCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEF-WAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~-~a~~vfC~AYklgm~g~ 75 (146)
...+.+.|++.|++|+..+.+. .|...++.+||+.++++|++..... .+..++.++.++|+.++
T Consensus 155 ~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~ 222 (347)
T cd06336 155 VAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIKQARELGFKGG 222 (347)
T ss_pred HHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHcCCCcc
Confidence 4557888999999999888885 5899999999999999999988888 99999999999999875
No 51
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=96.47 E-value=0.019 Score=47.07 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=70.1
Q ss_pred HHHHHHHHHhC--CCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 12 HNKLLAEMLDS--GIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~--ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
.+.+.+.+++. +++++....+. +|...++.+|++.+.++|++...+..+..++.+|.+.|+++ +..|+...+..
T Consensus 155 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~ 233 (346)
T cd06330 155 WADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFVRQANARGLFD-GTTVVLTLTGA 233 (346)
T ss_pred HHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHHHHHHhcCccc-CceEEeeccch
Confidence 45677888887 67787655442 57888999999999999999888888999999999999987 77888766533
Q ss_pred CcccCCCCCCCHHHHHHhhcceeEeeecccC
Q psy3581 87 ESWWNGSLPCPIEELVTALDGCILTDLLPLS 117 (146)
Q Consensus 87 ~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~~ 117 (146)
.. ...-...+.+|.+.....+..
T Consensus 234 ~~--------~~~~~~~~~~g~~~~~~~~~~ 256 (346)
T cd06330 234 PE--------LAPLGDEMPEGVIIGGRGPYF 256 (346)
T ss_pred hh--------hhhhhcccCCceEEeccccCC
Confidence 31 112223456777665554443
No 52
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=96.43 E-value=0.033 Score=46.97 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
++.+.+.+++.|.+++..+.+. .|...++.+||+.+..+|+.......+..++.+|.++|+.. .||.++|..+.
T Consensus 178 ~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~~~~~G~~~---~~i~~~~~~~~ 254 (369)
T PRK15404 178 ARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQAREAGLKT---QFMGPEGVGNK 254 (369)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHHCCCCC---eEEecCcCCCH
Confidence 3557788999999999888885 58899999999999999888777777777888888999843 46766553331
Q ss_pred ccCCCCCCCHHHHHHhhcceeEee
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTD 112 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~ 112 (146)
. ..+.+-.+++|++..-
T Consensus 255 ~-------~~~~~~~~~~Gv~~~~ 271 (369)
T PRK15404 255 S-------LSNIAGPASEGMLVTL 271 (369)
T ss_pred H-------HHHhhhhhhcCcEEEc
Confidence 1 1233446789987653
No 53
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.22 E-value=0.042 Score=45.35 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
..+.+.+.+++.|++++..+.|. .|...++.++++++..++++..+...+..++.+|.+.|+..+ |+..++...
T Consensus 160 ~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~ 236 (362)
T cd06343 160 YLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELGWKPT---FLLSSVSAS 236 (362)
T ss_pred HHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHHcCCCce---EEEEecccc
Confidence 34668888999999999988886 478899999999999999999999999999999999999864 555554322
Q ss_pred cccCCCCCCCHHHH-HHhhcceeEeeecc
Q psy3581 88 SWWNGSLPCPIEEL-VTALDGCILTDLLP 115 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi-~~a~~g~i~~~~~~ 115 (146)
. .=.-.++ ..+++|.+.+...+
T Consensus 237 ~------~~~~~~~~~~~~~g~~~~~~~~ 259 (362)
T cd06343 237 V------ASVLKPAGLEAAEGVIAAAYLK 259 (362)
T ss_pred c------HHHHHHhhhHhhCceEEEEEec
Confidence 1 0001222 25678887766544
No 54
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=96.14 E-value=0.08 Score=40.98 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++++...... ++....+..|++.+.++|++...+..+..++.++.+.|+ +..|+..+.....
T Consensus 152 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~ 228 (298)
T cd06268 152 AAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREAGL---KVPIVGGDGAAAP 228 (298)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCC---CCcEEecCccCCH
Confidence 4667788999999998776654 467888999999888889888888889999999999998 5566655432221
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeecccC
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLLPLS 117 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~~ 117 (146)
- ..+....+++|.+...+++..
T Consensus 229 ~-------~~~~~~~~~~g~~~~~~~~~~ 250 (298)
T cd06268 229 A-------LLELAGDAAEGVLGTTPYAPD 250 (298)
T ss_pred H-------HHHhhhHhhCCcEEeccCCCC
Confidence 0 012334678898877766543
No 55
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=96.00 E-value=0.095 Score=42.47 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|++.|++++..+.+. +|...++.++|+.+.-+|++......+..++=++...|+.++ -.|+-.++..+.
T Consensus 151 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 229 (336)
T cd06360 151 VEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQYDAAGLKAK-IPLIGSGFLTDG 229 (336)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHHHHcCCccC-CeEEecccccCH
Confidence 3567788999999998877664 588999999999998888888888888888888888898763 344444432221
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
=..+.+-++++|++...+++
T Consensus 230 -------~~~~~~g~~~~g~~~~~~~~ 249 (336)
T cd06360 230 -------TTLGAAGEAAEGVITALHYA 249 (336)
T ss_pred -------HHHHhhHhhhcCceeccccC
Confidence 03344557789987765543
No 56
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=95.97 E-value=0.041 Score=45.24 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g 74 (146)
.+.+.+.+++.|++|+..+.+. .|...++..||+.+..+|++...+..+..++.++.++|+..
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~ 226 (344)
T cd06345 161 DAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQQWAEQKVPI 226 (344)
T ss_pred HHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHHHHHHHHcCCCC
Confidence 3567788889999999988885 57889999999999999999999988999999999999843
No 57
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=95.97 E-value=0.043 Score=45.54 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.+.+.+.|++.|++|+..+.+. .|...++.+|++.+.-.|+...+...+..++=++.+.|+.++...++-.+
T Consensus 150 ~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 224 (348)
T cd06355 150 NKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTVNGDSNVAFFKQLKAAGITASKVPVLSFS 224 (348)
T ss_pred HHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHcCCCccCCeeEEcc
Confidence 3557788999999999988876 58899999999999999999888888888888889999987766666543
No 58
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=95.68 E-value=0.098 Score=43.07 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=66.5
Q ss_pred HHHHHHHHHh--CCCeEEEeeecc----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccC
Q psy3581 12 HNKLLAEMLD--SGIDVMVSHSFS----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMY 85 (146)
Q Consensus 12 ~~~L~~~l~~--~ni~v~~~~sf~----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy 85 (146)
.+.+.+.+++ .|++|+..+.+. +|...++.+||+.+..++++...+..+..++.++.++|+..+ |+.+.+.
T Consensus 160 ~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~ 236 (342)
T cd06329 160 AAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGNDLLLLVKQAADAGLKLP---FYTPYLD 236 (342)
T ss_pred HHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCchHHHHHHHHHHcCCCce---EEecccc
Confidence 4568889999 999999877764 578889999999999999998888888888889999999543 3333332
Q ss_pred CCcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 86 SESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 86 ~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
... ..+.+-.+++|.+....+
T Consensus 237 ~~~--------~~~~~g~~~~g~~~~~~~ 257 (342)
T cd06329 237 QPG--------NPAALGEAGLGLVVAVAY 257 (342)
T ss_pred chh--------HHHhhcccccceEEeeec
Confidence 221 233344566787665443
No 59
>KOG1052|consensus
Probab=95.53 E-value=0.04 Score=49.98 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=60.4
Q ss_pred HHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCcccCCCCCCCH-HHHHHhhcceeEeeeccc
Q psy3581 38 TALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWWNGSLPCPI-EELVTALDGCILTDLLPL 116 (146)
Q Consensus 38 ~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww~~~~~Ct~-~qi~~a~~g~i~~~~~~~ 116 (146)
..+..++....|+++++..+..+..+|-+|-.+||++..|+||+..+.... .++.. +...+.++|.+..+.++.
T Consensus 4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~i~t~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~ 78 (656)
T KOG1052|consen 4 KLLLKLKAMRTRVFVLHMFPILALAIFSQAEELGMMQFGYVWILTNLLTDA-----LDLDELYSLIDVMNGVLGLRGHIP 78 (656)
T ss_pred hHHHHhhccCceEEEEeCCHHHHHHHHHHHHHhCccccCeEEEEEecchhh-----hcccccccchhheeeEEeeccCCC
Confidence 345667778899999999999999999999999999999999999986552 23322 677788889888887654
Q ss_pred C
Q psy3581 117 S 117 (146)
Q Consensus 117 ~ 117 (146)
.
T Consensus 79 ~ 79 (656)
T KOG1052|consen 79 R 79 (656)
T ss_pred c
Confidence 3
No 60
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=95.52 E-value=0.12 Score=43.04 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=53.3
Q ss_pred HHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 15 LLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 15 L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
+.+.|++.|++|+..+.|. .|.+.++.+||+.++.+|++..++..+..++=++..+|+..+
T Consensus 168 ~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~~~~~G~~~~ 231 (357)
T cd06337 168 LPAALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQAAQAGFKPK 231 (357)
T ss_pred ccHHHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHHHHHCCCCCC
Confidence 4467788999999999986 588999999999999999999999888889988999998655
No 61
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=95.39 E-value=0.14 Score=42.75 Aligned_cols=95 Identities=8% Similarity=0.070 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCCeEEEeeec-----chhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSF-----SDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf-----~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
...+.+.|++.|++|+....+ ..|...++.+||+.+.-.|++..++..+..++=++.++|+.++.......+...
T Consensus 149 ~~~~~~~~~~~G~~vv~~~~~~~~~~~~d~s~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 228 (360)
T cd06357 149 NRIMRDLLEQRGGEVLGERYLPLGASDEDFARIVEEIREAQPDFIFSTLVGQSSYAFYRAYAAAGFDPARMPIASLTTSE 228 (360)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCchhhHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHcCCCccCceeEEeeccH
Confidence 456788899999999875443 258889999999999999999999988888888899999987754333222111
Q ss_pred CcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 87 ESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 87 ~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
+. ..+-.-++++|++...++
T Consensus 229 ~~--------~~~~~g~~~~g~~~~~~~ 248 (360)
T cd06357 229 AE--------VAAMGAEAAAGHITAAPY 248 (360)
T ss_pred HH--------HhhcchHhhCCcEEeccc
Confidence 11 011112578898876543
No 62
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=95.26 E-value=0.16 Score=38.00 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecch----hHHHHHHhhhcC-CeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSD----EISTALAKLKET-DVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~----d~~~~l~~LK~~-d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
.+.+.+.+++.|+++.....+.. +.....+.|++. +.++|++... ..|..++..+.++|+.+.++.|+..+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 142 LEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACND-EMAAGALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred HHHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCc-hHHHHHHHHHHHcCCCCCCCEEEeccccc
Confidence 35567788888888876555543 345667778877 7899998877 88999999999999996678888776644
Q ss_pred C
Q psy3581 87 E 87 (146)
Q Consensus 87 ~ 87 (146)
.
T Consensus 221 ~ 221 (269)
T cd01391 221 A 221 (269)
T ss_pred c
Confidence 4
No 63
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=95.23 E-value=0.23 Score=40.07 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++++....+. .|...++.++++.+..+|+.......+..++-++.++|+..| +|...+.+.+.
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~l~~~g~~~p--~~~~~~~~~~~ 227 (312)
T cd06333 150 LKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGP--IYQTHGVASPD 227 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHHHcCCCCC--EEeecCcCcHH
Confidence 4567788999999998777774 367788999988888888888877778889999999998766 33333333222
Q ss_pred ccCCCCCCCHHHHHHhhcceeEee
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTD 112 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~ 112 (146)
..+.+-.+++|.+.+.
T Consensus 228 --------~~~~~g~~~~g~~~~~ 243 (312)
T cd06333 228 --------FLRLAGKAAEGAILPA 243 (312)
T ss_pred --------HHHHhhHhhcCcEeec
Confidence 3344456788876654
No 64
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=95.15 E-value=0.44 Score=38.51 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.+++.|++++..+.+. .|....+.+|++.+.-.|+....+..+..++=++-++|+.++.+.-.-++. .+.
T Consensus 152 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 230 (343)
T PF13458_consen 152 AEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSL-DDA 230 (343)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGG-SSH
T ss_pred HHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHHHHHHhhccccccceeecccc-CcH
Confidence 4567889999999998888776 478889999999988889999999999999999999998876665553332 221
Q ss_pred ccCCCCCCCHHHHHH-hhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELVT-ALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~-a~~g~i~~~~~~ 115 (146)
.-.++.. +++|.+.+.+..
T Consensus 231 --------~l~~~~~~~~~g~~~~~~~~ 250 (343)
T PF13458_consen 231 --------SLQQLGGDALEGVYIVSPWF 250 (343)
T ss_dssp --------HHHHHHGGGGTTEEEEESGG
T ss_pred --------HHHHhhhhhccCceeecccC
Confidence 2345544 788887766643
No 65
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=95.03 E-value=0.12 Score=42.37 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
.+.+.+.|++.|++|+....+. .|...++.+||+.+..+|++......+..++=++.+.|+.++
T Consensus 149 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~ 215 (333)
T cd06358 149 LAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQFAAAGLRDR 215 (333)
T ss_pred HHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHcCCCcc
Confidence 3556688999999999888886 578889999999999999988887777776667788999875
No 66
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=94.52 E-value=0.21 Score=41.31 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g 74 (146)
.+.+.+.|++.|++|+..+.+. .|.+..+.+||+.+..+|++......+..++=++.+.|+-.
T Consensus 155 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~ 220 (347)
T cd06335 155 RKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGMAKLGWKV 220 (347)
T ss_pred HHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHHHcCCCC
Confidence 4667889999999999888885 58889999999999999988888888888777788888853
No 67
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=94.44 E-value=0.21 Score=43.47 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHhhhcCC-eEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 37 STALAKLKETD-VRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 37 ~~~l~~LK~~d-~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
...|+.+|++. .|+|++...++.+..+| ++.++.|+||++.
T Consensus 200 ~~~L~~i~~~~~~~~ill~cs~e~~~~il------~~~~~~y~wIv~~ 241 (382)
T cd06377 200 RAQLELLKDPPGPAVVLFGCDVARARRVL------ELTPPGPHWILGD 241 (382)
T ss_pred HHHHHHhhcccCceEEEEECCHHHHHHHH------HhhccceEEEEcC
Confidence 66899999999 99999999999999998 6788889999975
No 68
>KOG1056|consensus
Probab=94.30 E-value=0.47 Score=45.44 Aligned_cols=96 Identities=21% Similarity=0.320 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhCCCeEEEeeecch-----hHHHHHHhhhc-CCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSD-----EISTALAKLKE-TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~-----d~~~~l~~LK~-~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.++-+.++-++.||=|..++.... ..+..|++|.+ .++|++|+....+.+++++=.|-+++|.| ..+||-.+-
T Consensus 210 Gieaf~~~a~~~~iCIa~s~ki~~~~~~~~~~~~l~kl~~~~~a~vvV~F~~~~~~r~~~~aa~~~n~~g-~~~wiaSd~ 288 (878)
T KOG1056|consen 210 GIEAFKEEAAERGICIAFSEKIYQLSIEQEFDCVLRKLLETPNARVVVVFCRGEDARRLLKAARRANLTG-EFLWIASDG 288 (878)
T ss_pred hHHHHHHhHHhcCceEEehhhcccccchhHHHHHHHHHhhcCCCeEEEEecCcchHHHHHHHHHHhCCCc-ceEEEecch
Confidence 344555666677777766655442 34455777777 89999999999999999999999999999 789998654
Q ss_pred CCCcccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 85 YSESWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 85 y~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
.... +-..+.....++|.+.+..
T Consensus 289 W~~~------~~~~~~~e~~a~g~i~i~l 311 (878)
T KOG1056|consen 289 WASQ------NSPTEAPEREAEGAITIKL 311 (878)
T ss_pred hhcc------CChhhhhhhhhceeEEEEe
Confidence 3331 1122223338888887664
No 69
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=94.23 E-value=0.3 Score=39.90 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQ 78 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YV 78 (146)
.+.+.+.+++.|.+|+..+.+. .|...++.++++.+...|+...++..+..++=++...|+.+.+..
T Consensus 149 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (333)
T cd06331 149 NRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLSTLVGDSNVAFYRQFAAAGLDADRIP 218 (333)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCcccHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHHHcCCCcCCCe
Confidence 4567788899999999888876 588999999999999999999888888776666777888755543
No 70
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=94.17 E-value=0.27 Score=40.17 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
.+.+.+.|++.|++|+..+.+. .|.+.++.+||.+++..|++......+..++=++...|+..+
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~ 218 (340)
T cd06349 152 ADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQARAVGLDIP 218 (340)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCCCCc
Confidence 4668889999999999877664 589999999999999999999999889999999999998654
No 71
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=92.10 E-value=0.64 Score=38.22 Aligned_cols=61 Identities=7% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
.+.+.+.|++.|++++..+.+. .|.+.++.+||+.+.-+|+.......+..++=++...|+
T Consensus 149 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~ 212 (334)
T cd06356 149 AEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVMSILVGANHLSFYRQWAAAGL 212 (334)
T ss_pred HHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcCCCEEEEeccCCcHHHHHHHHHHcCC
Confidence 4567788999999999988886 588999999999999999988888777777777888888
No 72
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=92.09 E-value=0.76 Score=37.48 Aligned_cols=92 Identities=10% Similarity=0.089 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
...+.+.+++.|+++.....+. .|....+.++++.+...|+...++..+..++=++.++|+-++..+ .. ..+.+.
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~-~~-~~~~~~ 227 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRAAGLTPKVVL-SG-TCYDPA 227 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCCCEEE-ec-CCCCHH
Confidence 4567888999999998876664 578889999999999999999999899999999999999877532 11 112221
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
..+.+-.+++|++.+.+
T Consensus 228 --------~~~~~g~~~~g~~~~~~ 244 (341)
T cd06341 228 --------LLAAPGPALAGVYIAVF 244 (341)
T ss_pred --------HHHhcCcccCceEEEee
Confidence 34455567889776554
No 73
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=91.48 E-value=1.2 Score=36.07 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g 74 (146)
.+.+.+.+++.|++++....+. .|...++.++++.+..+|++......+..++=++-++|+..
T Consensus 153 ~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~~~~G~~~ 218 (336)
T cd06326 153 LAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRKAGGGA 218 (336)
T ss_pred HHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHhcCCCC
Confidence 4557788999999988876776 47888999999999999999888778888888888889854
No 74
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=90.88 E-value=1.6 Score=36.40 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCe
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKY 77 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~Y 77 (146)
..+.+.+++.|++|+..+.+. .|...++.+||+.+.-.|++......+..++=++.++|+..+..
T Consensus 152 ~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~pDav~~~~~~~~~~~~~~~~~~~G~~~~~~ 219 (359)
T TIGR03407 152 KIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTLNGDSNVAFFKQLKNAGITAKDV 219 (359)
T ss_pred HHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhCCCEEEEeccCCCHHHHHHHHHHcCCCccCC
Confidence 446788899999999888776 48889999999999888887777766777777888889865543
No 75
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=89.86 E-value=1.4 Score=37.37 Aligned_cols=63 Identities=8% Similarity=0.109 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
..+.+.+++.|++|+..+.+. .|...+|.++|+.+.-+++...+...+..++=++-.+|+..+
T Consensus 151 ~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i~~~~pD~V~~~~~g~~~~~~~kq~~~~G~~~~ 216 (374)
T TIGR03669 151 DWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNIQKADPDFVMSMLVGANHASFYEQAASANLNLP 216 (374)
T ss_pred HHHHHHHHHcCCeEEeEEecCCCcchHHHHHHHHHHcCCCEEEEcCcCCcHHHHHHHHHHcCCCCc
Confidence 446678889999999988886 588999999999999999988777777777777888888544
No 76
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=88.60 E-value=3.5 Score=33.03 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCccc
Q psy3581 14 KLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWW 90 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww 90 (146)
.+.+.|+ ..++..+.+. .|...+++++|+.+..+|++...+..+..++=++.++|+.+ +..++.+++..+.
T Consensus 153 ~~~~~~~---~~~~~~~~~~~~~~d~~~~i~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-- 226 (333)
T cd06332 153 GFKRTFK---GEVVEEVYTPLGQLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQYDQAGLKK-KIPLYGPGFLTDQ-- 226 (333)
T ss_pred HHHHhhc---EEEeeEEecCCCCcchHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCccc-CCceeccCCCCCH--
Confidence 3444444 3555544443 47777899999999999999888788888888888888865 4455544433221
Q ss_pred CCCCCCCHHHHHHhhcceeEeeec
Q psy3581 91 NGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 91 ~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
+ ..+.+-.+++|.+...+.
T Consensus 227 ----~-~~~~~~~~~~g~~~~~~~ 245 (333)
T cd06332 227 ----D-TLPAQGDAAVGVLTALHW 245 (333)
T ss_pred ----H-HHHhhchhhcCeeeeecc
Confidence 0 234455678888765543
No 77
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=88.17 E-value=3.4 Score=33.71 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=56.1
Q ss_pred CeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCcccCCCCCCCHHH
Q psy3581 24 IDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWWNGSLPCPIEE 100 (146)
Q Consensus 24 i~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww~~~~~Ct~~q 100 (146)
.+++..+.+. +|...++.+||+.+..+|++......+..++=++..+|+.+ +..++.+++..+.- ..+.
T Consensus 160 ~~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~-------~~~~ 231 (333)
T cd06359 160 GEVVGEVYTKLGQLDFSAELAQIRAAKPDAVFVFLPGGMGVNFVKQYRQAGLKK-DIPLYSPGFSDEED-------TLPA 231 (333)
T ss_pred ceeeeeecCCCCCcchHHHHHHHHhCCCCEEEEEccCccHHHHHHHHHHcCccc-CCeeeccCcccCHH-------HHHh
Confidence 4566555543 57889999999999999999888877888888888999875 44455544433220 1223
Q ss_pred HHHhhcceeEeeec
Q psy3581 101 LVTALDGCILTDLL 114 (146)
Q Consensus 101 i~~a~~g~i~~~~~ 114 (146)
+-.+++|++...+.
T Consensus 232 ~g~~~~g~~~~~~~ 245 (333)
T cd06359 232 VGDAALGLYNTAQW 245 (333)
T ss_pred cchhhcCeeecccc
Confidence 33567887765543
No 78
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=87.38 E-value=2.6 Score=34.58 Aligned_cols=62 Identities=6% Similarity=0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHH-HHHHHHHHHHHcCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEF-WAKMIFCEAYRIGMI 73 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~-~a~~vfC~AYklgm~ 73 (146)
...+.+.+++.|++|+..+.+. .|...++.+||+.+.-+|+...... .+.+.+-++...|+.
T Consensus 153 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~~g~~ 218 (333)
T cd06328 153 VAAFKAALEKLGAAIVTEEYAPTDTTDFTPYAQRLLDALKKVLFVIWAGAGGPWPKLQQMGVLGYG 218 (333)
T ss_pred HHHHHHHHHhCCCEEeeeeeCCCCCcchHHHHHHHHhcCCCEEEEEecCchhHHHHHHHhhhhcCC
Confidence 3567789999999999988886 4889999999999877665554443 455666555555544
No 79
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=87.11 E-value=3.9 Score=35.82 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=60.9
Q ss_pred HHHHHHHHhCCCeEEEeeecch-hH-HHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCccc
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSD-EI-STALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWW 90 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~-d~-~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww 90 (146)
+.|.......+..+...+-... |+ .+.|+. +...+|||+.-..++..++++=. |+...+||-|..+-+++..|
T Consensus 173 ~al~a~~~~f~~~~~~~~~l~~~~~~~~il~~-~~~~sRIiImCG~p~~ir~lm~~----~~~~gDYVf~~IDlF~~sy~ 247 (380)
T cd06369 173 NALEAGVAYFSSALKFKELLRTEEELQKLLTD-KNRKSNVIIMCGTPEDIVNLKGD----RAVAEDIVIILIDLFNDVYY 247 (380)
T ss_pred HhhhhhhhhhhhcccceeeecCchhHHHHHHH-hccCccEEEEeCCHHHHHHHHhc----CccCCCEEEEEEecccchhc
Confidence 3344444444444432222222 33 333444 45889999999999999998864 55567999999999887665
Q ss_pred CCCCCCCHHHHHHhhcceeEeeeccc
Q psy3581 91 NGSLPCPIEELVTALDGCILTDLLPL 116 (146)
Q Consensus 91 ~~~~~Ct~~qi~~a~~g~i~~~~~~~ 116 (146)
+ +..-.+|++.++.+...+-
T Consensus 248 ----~--d~~a~~amqsVLvIT~~~p 267 (380)
T cd06369 248 ----E--NTTSPPYMRNVLVLTLPPR 267 (380)
T ss_pred ----c--CcchHHHHhceEEEecCCC
Confidence 1 1245678999988876553
No 80
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=78.90 E-value=19 Score=29.30 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=44.8
Q ss_pred HHHhH-HHHHHHHHh-CCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHc
Q psy3581 8 MYRAH-NKLLAEMLD-SGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRI 70 (146)
Q Consensus 8 fs~~~-~~L~~~l~~-~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYkl 70 (146)
|.... +.+.+.+++ .|++++....+. .++..++.++|+.+..+|++..+.... ..+.++.+.
T Consensus 147 ~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~-~~~~~~~~~ 213 (332)
T cd06344 147 YSQSLKQEFTSALLERGGGIVVTPCDLSSPDFNANTAVSQAINNGATVLVLFPDTDTL-DKALEVAKA 213 (332)
T ss_pred HhHHHHHHHHHHHHHhcCCeeeeeccCCCCCCCHHHHHHHHHhcCCCEEEEeCChhHH-HHHHHHHHh
Confidence 44444 356778888 599998877665 267789999999999999988887644 455555443
No 81
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=77.82 E-value=9 Score=32.24 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRK 76 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~ 76 (146)
.+.+.+.|++.|.+++..+.+. .+....+.++|+.+.-+|+...+.+.+..++=++..+|+.+.-
T Consensus 165 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~~ 232 (366)
T COG0683 165 ADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKL 232 (366)
T ss_pred HHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCCEEEECCCCccchHHHHHHHHcCCCCcc
Confidence 3568889999999876666765 4688899999999999999999999999999999999887653
No 82
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=77.26 E-value=11 Score=31.12 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcC---------------------CeEEEEEEccHH-HHHHHHHHH
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKET---------------------DVRIILGNFNEF-WAKMIFCEA 67 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~---------------------d~RIIi~~~~~~-~a~~vfC~A 67 (146)
+.+.+.+++.|++|+..+.+. .|.+.+|.+|++. +.-.|++.++++ .+..+.-++
T Consensus 142 ~~f~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 221 (336)
T cd06339 142 DAFRQAWQQLGGTVVAIESYDPSPTDLSDAIRRLLGVDDSEQRIAQLKSLESEPRRRQDIDAIDAVALPDGEARLIKPQL 221 (336)
T ss_pred HHHHHHHHHcCCceeeeEecCCCHHHHHHHHHHHhccccchhhhhhhhhcccCccccCCCCcEEEEecChhhhhhhcchh
Confidence 557788999999999999997 4778899999998 888888877776 555554444
Q ss_pred HHc
Q psy3581 68 YRI 70 (146)
Q Consensus 68 Ykl 70 (146)
-+.
T Consensus 222 ~~~ 224 (336)
T cd06339 222 LFY 224 (336)
T ss_pred hhh
Confidence 333
No 83
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.95 E-value=8.3 Score=29.71 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=45.7
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHH----cCCCCCCeEEEEec
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYR----IGMIGRKYQWLIIG 83 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYk----lgm~g~~YVWIl~g 83 (146)
..-+++..+|++.|..|+ +++.|+..+.++.+++.--=|-+...++.. .|+||. .+|||+.|.++.+.
T Consensus 51 ~~Frd~~~ef~~~~a~V~---GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~---v~~~ygv~~~k~~~gk~~~~~~R~ 122 (157)
T COG1225 51 CDFRDLLEEFEKLGAVVL---GISPDSPKSHKKFAEKHGLTFPLLSDEDGE---VAEAYGVWGEKKMYGKEYMGIERS 122 (157)
T ss_pred HHHHHHHHHHHhCCCEEE---EEeCCCHHHHHHHHHHhCCCceeeECCcHH---HHHHhCcccccccCccccccccce
Confidence 345777888889999885 467677777777666643335555555433 788884 46888888776554
No 84
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=71.93 E-value=12 Score=23.49 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhCCCeEEEeeec
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSF 32 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf 32 (146)
...++.+.|.++|++|.....+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~ 35 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIA 35 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEE
Confidence 3467888999999999765544
No 85
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=71.81 E-value=22 Score=26.17 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=51.2
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHH---HHHHHHHHHHc-CCCCCCeEEEEecc
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFW---AKMIFCEAYRI-GMIGRKYQWLIIGM 84 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~---a~~vfC~AYkl-gm~g~~YVWIl~gw 84 (146)
....+-+...|+.+|++|+....+ ..|...++..++.++.||.+...... ..+-++++-+. |+ ++-..++=|-
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~--~~i~vivGG~ 92 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGR--PDILVVVGGV 92 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCC--CCCEEEEeCC
Confidence 345666778899999999987655 56678889999999999998875532 23334444444 43 2455555444
Q ss_pred CCC
Q psy3581 85 YSE 87 (146)
Q Consensus 85 y~~ 87 (146)
..+
T Consensus 93 ~~~ 95 (132)
T TIGR00640 93 IPP 95 (132)
T ss_pred CCh
Confidence 443
No 86
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=69.85 E-value=16 Score=26.44 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhCCCeEEEeee
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHS 31 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~s 31 (146)
..+.+.+.|++.|+++.....
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~ 73 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPL 73 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcc
Confidence 346677888888888876653
No 87
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=65.89 E-value=54 Score=24.53 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCC-eEEEEEEccHHH-------HHHHHHHHHHcCCCCCCeEEEE
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETD-VRIILGNFNEFW-------AKMIFCEAYRIGMIGRKYQWLI 81 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d-~RIIi~~~~~~~-------a~~vfC~AYklgm~g~~YVWIl 81 (146)
+.|.+.|.+.+..+....++. ..+.+.|+.|++.+ -|||++-++|.. +.+-+.+|.+..-..++..+|
T Consensus 75 ~~l~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~~~~~~~i- 153 (159)
T cd03411 75 EALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRPAPELRVI- 153 (159)
T ss_pred HHHHHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCCCCcEEEe-
Confidence 456667766543333333333 35778899999887 788888777643 556667777654334566664
Q ss_pred eccC
Q psy3581 82 IGMY 85 (146)
Q Consensus 82 ~gwy 85 (146)
.+|+
T Consensus 154 ~~~~ 157 (159)
T cd03411 154 RSFY 157 (159)
T ss_pred Cccc
Confidence 4443
No 88
>PTZ00445 p36-lilke protein; Provisional
Probab=61.00 E-value=31 Score=28.08 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=39.0
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeecc----h-------h---------------HHHHHHhhhcCCeEEEEEEccHHHH
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSFS----D-------E---------------ISTALAKLKETDVRIILGNFNEFWA 60 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf~----~-------d---------------~~~~l~~LK~~d~RIIi~~~~~~~a 60 (146)
..+++-+++.|++.||.+++. -|. + + ...-++.|++.+.+|+||-|+.+.+
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~-D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIAS-DFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEe-cchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 456778999999999999876 332 0 1 2234789999999999999988744
No 89
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=58.19 E-value=34 Score=22.16 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
+..+...|++.|+.+...-. ...+..+++..+.+++++++...
T Consensus 17 a~~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig 59 (91)
T cd00860 17 AKEVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVG 59 (91)
T ss_pred HHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEEC
Confidence 34566777777877755322 34667777777767666444433
No 90
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=57.00 E-value=76 Score=26.01 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=39.3
Q ss_pred ehhHHHhHHHHHHHHHhCCCeEEEeeecch-----hHHHHHHhhhcCCeEEEEEEccH--HHHHHHHHHHHHcCC
Q psy3581 5 RILMYRAHNKLLAEMLDSGIDVMVSHSFSD-----EISTALAKLKETDVRIILGNFNE--FWAKMIFCEAYRIGM 72 (146)
Q Consensus 5 ~~~fs~~~~~L~~~l~~~ni~v~~~~sf~~-----d~~~~l~~LK~~d~RIIi~~~~~--~~a~~vfC~AYklgm 72 (146)
+-++..+.+.+.+.|++.|+++.....+.. +.....+.++..++.+|++.-.- ....|. .||++|+
T Consensus 28 ~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~--~A~~~~~ 100 (250)
T PF13685_consen 28 ENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKY--AAFELGI 100 (250)
T ss_dssp TTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHH--HHHHHT-
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHH--HHHhcCC
Confidence 346778889999999999999975443332 34445667777788888877655 333343 3677743
No 91
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=55.61 E-value=16 Score=27.46 Aligned_cols=52 Identities=13% Similarity=0.318 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHH
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEA 67 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~A 67 (146)
.+++.+.|++.|++++..+ .-...++++.+. +++|||+..-+..+-.+||..
T Consensus 121 e~el~~~l~~~~~~~v~~~--~~s~~eqv~~~~--~a~viig~hGs~l~n~~F~~~ 172 (206)
T PF04577_consen 121 EDELLEILKKYGFEVVDPE--DLSFEEQVKLFA--SAKVIIGPHGSALTNLLFMPP 172 (206)
T ss_pred HHHHHHHHhhCCeEEEeCC--CCCHHHHHHHhc--CCCEEEecCchHhheeeecCC
Confidence 4567889999999987744 234777888665 888999999888888888743
No 92
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=54.76 E-value=21 Score=25.23 Aligned_cols=85 Identities=16% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCeEEEeeec-----c---hhHHH---HHHhhh-cCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSF-----S---DEIST---ALAKLK-ETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQW 79 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf-----~---~d~~~---~l~~LK-~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVW 79 (146)
...+.+.|++.|+++.....- . .|..- .++.+- ..--.|+++....+.+ .++-++-++| .-|+
T Consensus 49 ~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~-~~v~~l~~~g----~~V~ 123 (146)
T PF01936_consen 49 QKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFA-PLVRKLRERG----KRVI 123 (146)
T ss_dssp HHHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGH-HHHHHHHHH------EEE
T ss_pred hhhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHH-HHHHHHHHcC----CEEE
Confidence 466778889999977554331 1 12222 223331 1125666666665543 3333344443 3366
Q ss_pred EEeccCCCcccCCCCCCCHHHHHHhhcceeEe
Q psy3581 80 LIIGMYSESWWNGSLPCPIEELVTALDGCILT 111 (146)
Q Consensus 80 Il~gwy~~~Ww~~~~~Ct~~qi~~a~~g~i~~ 111 (146)
++.. . +.+++++.++.+..+.+
T Consensus 124 v~~~--~--------~~~s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 124 VVGA--E--------DSASEALRSAADEFISI 145 (146)
T ss_dssp EEE---G--------GGS-HHHHHHSSEEEE-
T ss_pred EEEe--C--------CCCCHHHHHhcCEEEeC
Confidence 6652 1 23677888887776654
No 93
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.21 E-value=89 Score=23.27 Aligned_cols=74 Identities=15% Similarity=0.007 Sum_probs=53.7
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHH----HHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEF----WAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~----~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
+....+.+...|+++|++|+.. +....|...++..++.++.||-++.... ...++.-+..+.|+-+. .|++=|
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~--~vivGG 90 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI--LLYVGG 90 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC--EEEecC
Confidence 3455677888999999999775 6666788889999999999999776442 34455545556777554 577766
Q ss_pred c
Q psy3581 84 M 84 (146)
Q Consensus 84 w 84 (146)
-
T Consensus 91 ~ 91 (134)
T TIGR01501 91 N 91 (134)
T ss_pred C
Confidence 4
No 94
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=53.04 E-value=95 Score=24.11 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
+-.+.|++.|++++....=.-|+...++.|++.+.+=+.+..-+ .+..+..+.|+..+=+..+.|-...
T Consensus 107 ~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~vlveGG~----~l~~~fl~~~LvDel~l~i~P~ilG 175 (217)
T PRK05625 107 EKVEELEKKGAEVIVAGGERVDLPDLLEDLYERGIKRLMVEGGG----TLIWSMFKEGLVDEVRVTVGPKIIG 175 (217)
T ss_pred HHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEecCH----HHHHHHHHCCCCcEEEEEEcCeeec
Confidence 34567788899986421112378888999998888766665555 4555567889999888888877665
No 95
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=52.94 E-value=29 Score=25.47 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=31.0
Q ss_pred hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 34 DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
++..+.|+.+|+.+.+|+|+...+....+.+|+ ++|+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~--~~~i 128 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAE--RLGI 128 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHH--HTTS
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHH--HcCC
Confidence 555688999999999999999999988888887 4444
No 96
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=52.25 E-value=26 Score=31.96 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecc-hhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFS-DEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~-~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
|......+....+--|+.+....-.+ +|...+|+.||+.+.++||+....
T Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~~~ 165 (538)
T PRK15424 115 YQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIEAVVGAGLI 165 (538)
T ss_pred cCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEEcCchH
Confidence 33333444433334455554332222 588899999999999999977543
No 97
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=50.93 E-value=1e+02 Score=24.00 Aligned_cols=70 Identities=11% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
+-.+.|++.|++++....-.-|+...|+.|++.+.+=+.+..-+ ++..+..+.|+..+=+.++.|-....
T Consensus 103 ~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveGG~----~l~~~fl~~~LvDel~l~i~P~ilG~ 172 (210)
T TIGR01508 103 EKVEELEDKGVEVVKFGEGRVDLKKLLDILYDKGVRRLMVEGGG----TLIWSLFKENLVDEISVYIAPKIFGG 172 (210)
T ss_pred HHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEeeCH----HHHHHHHHCCCCcEEEEEEcCEEEcC
Confidence 34567888999986431111278889999999998888777666 45556678899999888888877663
No 98
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=50.29 E-value=74 Score=23.58 Aligned_cols=75 Identities=15% Similarity=0.009 Sum_probs=52.1
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHH----HHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEF----WAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~----~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
+....+-+...|+.+|++|+.- +....|...++..++.++.||.++.... ...++.=+.-+.|+- +..+++=|
T Consensus 12 HdiGkniv~~~L~~~GfeVidL-G~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~--~v~vivGG 88 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNL-GVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLK--DILLYVGG 88 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCC--CCeEEEEC
Confidence 3455677778999999999775 5566778889999999999999876442 334444444455663 36677766
Q ss_pred cC
Q psy3581 84 MY 85 (146)
Q Consensus 84 wy 85 (146)
-.
T Consensus 89 ~~ 90 (128)
T cd02072 89 NL 90 (128)
T ss_pred CC
Confidence 53
No 99
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.31 E-value=85 Score=23.87 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIF 64 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vf 64 (146)
.++-+-+.|++.|++|+..-.+ +.|.+.+...-+.|+.+|.+......-..++
T Consensus 28 gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~ 80 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLV 80 (143)
T ss_pred chHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHH
Confidence 3455778999999999887444 4567788888899999999988776444443
No 100
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=47.11 E-value=76 Score=21.07 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCeEEEeeecch---h-HHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSD---E-ISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~---d-~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
+.|.+.+.+.|...+..+.|+. . ....|+.+++.| |+ .++.|.+|.|+.++
T Consensus 16 ~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cD--if------------------I~ilG~rYG~~~~~ 70 (83)
T PF13271_consen 16 DALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECD--IF------------------ILILGNRYGSVPED 70 (83)
T ss_pred HHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCC--EE------------------EEeeccccCCCCCC
Confidence 4577788889999999888852 2 334578887777 33 35789999888733
No 101
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=46.93 E-value=82 Score=20.73 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHH
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEF 58 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~ 58 (146)
..+.++.+.|+++||.+.... -...+..+++.-...+++.+++....+
T Consensus 16 ~~a~~l~~~L~~~gi~v~~d~-~~~~~~k~~~~a~~~g~p~~iiiG~~e 63 (94)
T PF03129_consen 16 EYAQELANKLRKAGIRVELDD-SDKSLGKQIKYADKLGIPFIIIIGEKE 63 (94)
T ss_dssp HHHHHHHHHHHHTTSEEEEES-SSSTHHHHHHHHHHTTESEEEEEEHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEC-CCCchhHHHHHHhhcCCeEEEEECchh
Confidence 346789999999999886654 446788999999888888877766543
No 102
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.53 E-value=39 Score=20.37 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCeEEEee
Q psy3581 12 HNKLLAEMLDSGIDVMVSH 30 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~ 30 (146)
..++.+.|.++|++|....
T Consensus 13 L~~i~~~l~~~~~nI~~i~ 31 (65)
T cd04882 13 LHEILQILSEEGINIEYMY 31 (65)
T ss_pred HHHHHHHHHHCCCChhheE
Confidence 4567788899999886443
No 103
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=46.49 E-value=21 Score=23.69 Aligned_cols=34 Identities=35% Similarity=0.451 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETD 47 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d 47 (146)
.|...|.+-|..|-..+.|++-....|+.|.+.|
T Consensus 39 ellniltelgcdvdfde~fsdiaddilesl~eqd 72 (73)
T PF06076_consen 39 ELLNILTELGCDVDFDENFSDIADDILESLMEQD 72 (73)
T ss_pred HHHHHHHHhCCCcccccchhHHHHHHHHHHHHcc
Confidence 4677788999999999999888888888887766
No 104
>PHA02780 hypothetical protein; Provisional
Probab=46.14 E-value=21 Score=23.65 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETD 47 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d 47 (146)
.|...|.+-|..|-..+.|++-....|+.|.+.|
T Consensus 39 ellniltelgcdvdfde~fsdiaddilesl~eqd 72 (73)
T PHA02780 39 ELLNILTELGCDVDFDENFSDIADDILESLIEQD 72 (73)
T ss_pred HHHHHHHHhCCCcccccchhHHHHHHHHHHHHcc
Confidence 4677888999999999999888888888887765
No 105
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.46 E-value=58 Score=23.01 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEE
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILG 53 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~ 53 (146)
..+.+.|++.|+.|...-. ..+..+++.....+++.+++
T Consensus 45 ~~la~~LR~~gi~v~~d~~--~sl~kqlk~A~k~g~~~~ii 83 (121)
T cd00858 45 KEISEELRELGFSVKYDDS--GSIGRRYARQDEIGTPFCVT 83 (121)
T ss_pred HHHHHHHHHCCCEEEEeCC--CCHHHHHHHhHhcCCCEEEE
Confidence 4456677777777765444 45666666666666554443
No 106
>PHA02627 hypothetical protein; Provisional
Probab=45.21 E-value=23 Score=23.51 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETD 47 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d 47 (146)
.|...|.+-|..|-..+.|++-....|+.|.+.|
T Consensus 39 ellniltelgcdvdfde~fsdiaddilesl~eqd 72 (73)
T PHA02627 39 ELLNILTELGCDVDFDEDFSDIADDVLESLMEQD 72 (73)
T ss_pred HHHHHHHHhCCCcccccchHHHHHHHHHHHHHcc
Confidence 4677788899999999999888888888887765
No 107
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.09 E-value=74 Score=19.70 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCeEEEee
Q psy3581 12 HNKLLAEMLDSGIDVMVSH 30 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~ 30 (146)
+..+.+.|.++|++|....
T Consensus 15 l~~i~~~l~~~~inI~~i~ 33 (72)
T cd04883 15 LADIAAIFKDRGVNIVSVL 33 (72)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 4567788999999997553
No 108
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=44.58 E-value=40 Score=30.58 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=19.9
Q ss_pred hhHHHHHHhhhcCCeEEEEEEcc
Q psy3581 34 DEISTALAKLKETDVRIILGNFN 56 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~ 56 (146)
+|....|+.||+.++++|||...
T Consensus 132 ~e~~~~~~~l~~~G~~~viG~~~ 154 (526)
T TIGR02329 132 EDARSCVNDLRARGIGAVVGAGL 154 (526)
T ss_pred HHHHHHHHHHHHCCCCEEECChH
Confidence 57888999999999999997653
No 109
>PLN02449 ferrochelatase
Probab=42.63 E-value=1.4e+02 Score=27.17 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCC-eEEEEEEccHHH-------HHHHHHHHHHcCCC--CCCeEE
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETD-VRIILGNFNEFW-------AKMIFCEAYRIGMI--GRKYQW 79 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d-~RIIi~~~~~~~-------a~~vfC~AYklgm~--g~~YVW 79 (146)
+.|.+.|++.|.++....++. ....+.|+.||+.+ -||+++-+||.- ..+.+.++.+..-. ...+.+
T Consensus 167 ~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~ 246 (485)
T PLN02449 167 EALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTV 246 (485)
T ss_pred HHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEE
Confidence 457777777776555555554 35667899999875 788888887643 45566666655322 233444
Q ss_pred EEeccCCCcccCCC--CCCCHHHHHHhh
Q psy3581 80 LIIGMYSESWWNGS--LPCPIEELVTAL 105 (146)
Q Consensus 80 Il~gwy~~~Ww~~~--~~Ct~~qi~~a~ 105 (146)
+++ ||+.+ +++..+.|.+++
T Consensus 247 -I~~-----~~~~p~yI~A~a~~I~~~l 268 (485)
T PLN02449 247 -IPS-----WYQREGYVKAMADLIKKEL 268 (485)
T ss_pred -ecc-----ccCChHHHHHHHHHHHHHH
Confidence 444 44433 677777777665
No 110
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=42.60 E-value=81 Score=21.36 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=25.5
Q ss_pred HHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHH
Q psy3581 37 STALAKLKETDVRIILGNFNEFWAKMIFCEAYR 69 (146)
Q Consensus 37 ~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYk 69 (146)
....+.++++++++|.+...+....+-+++++.
T Consensus 49 ~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 49 NELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp HHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred HHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 344567778889999988888887788887776
No 111
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=42.43 E-value=33 Score=24.62 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCeEEEeeecch-hHHHHHHhhhcCCeEEEEEEccH
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSD-EISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~-d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
+.+.-|+-.|++.....+..+ .....++.|++.|+.||++.-.-
T Consensus 12 dtvtGFrLaGv~~~~v~~~~~~~~~~~~~~l~~~~~~iIiite~~ 56 (104)
T COG1436 12 DTVTGFRLAGVRVVYVADDEEDELRAALRVLAEDDVGIILITEDL 56 (104)
T ss_pred chhhceeeecceeEEEecChhHHHHHHHHhhccCCceEEEEeHHH
Confidence 455667777888766334444 47788999999999999987544
No 112
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=42.39 E-value=93 Score=20.11 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS 33 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~ 33 (146)
..++.+.|+++||++...++.+
T Consensus 15 L~~il~~f~~~~ini~~i~s~p 36 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRP 36 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEE
Confidence 4567788999999998877665
No 113
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=41.98 E-value=1.4e+02 Score=23.59 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhCCCeEEEeeecch----------------------hHHHHHHhhhc--CCeEEEEEEccHHHHHHHHHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSD----------------------EISTALAKLKE--TDVRIILGNFNEFWAKMIFCE 66 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~----------------------d~~~~l~~LK~--~d~RIIi~~~~~~~a~~vfC~ 66 (146)
...-|...|+..|+.|...++..+ +--.-++.|.+ .|.||+++-.|...|-.| +
T Consensus 21 f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~sIATAV--~ 98 (182)
T COG4567 21 FLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTGYASIATAV--E 98 (182)
T ss_pred HHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEecchHHHHHH--H
Confidence 345677888899999988877642 11133455544 489999999999988877 5
Q ss_pred HHHcCC
Q psy3581 67 AYRIGM 72 (146)
Q Consensus 67 AYklgm 72 (146)
|-|+|-
T Consensus 99 AvKlGA 104 (182)
T COG4567 99 AVKLGA 104 (182)
T ss_pred HHHhhh
Confidence 899974
No 114
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=41.87 E-value=78 Score=24.17 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEEE--Ec---cHHHHHHHHHHHHHcCCCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIILG--NF---NEFWAKMIFCEAYRIGMIGRK 76 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi~--~~---~~~~a~~vfC~AYklgm~g~~ 76 (146)
..-|.+.|++.|+++....-..+|+. ++|+.+.+ ++.+|+. .. .-+.++.++++|....+.+..
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~-~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~ 92 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE-RADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDE 92 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCH
Confidence 44577889999999988777777765 55655543 4556653 22 336688888888777766643
No 115
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=40.74 E-value=1e+02 Score=24.62 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCeEEEeeecc----------------hhHHHHHHhhhcCC----------------eEEEEEEc---c
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS----------------DEISTALAKLKETD----------------VRIILGNF---N 56 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~----------------~d~~~~l~~LK~~d----------------~RIIi~~~---~ 56 (146)
..+|...+.+.|.++...+.|. +|+..-++.||..| -|||+... -
T Consensus 16 L~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i~~sle~iyGKRvIiiGGGAqV 95 (218)
T COG1707 16 LRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEIHRSLEEIYGKRVIIIGGGAQV 95 (218)
T ss_pred HHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEeeecchHHHHhCcEEEEECCchhH
Confidence 4567777888999999988885 36666777777665 47776443 3
Q ss_pred HHHHHHHHHHHHHcCCCCCCe
Q psy3581 57 EFWAKMIFCEAYRIGMIGRKY 77 (146)
Q Consensus 57 ~~~a~~vfC~AYklgm~g~~Y 77 (146)
+.-|+-...+|=++|+.|++-
T Consensus 96 sqVA~GAIsEADRHNiRGERI 116 (218)
T COG1707 96 SQVARGAISEADRHNIRGERI 116 (218)
T ss_pred HHHHHhhcchhhhccccccee
Confidence 356888899999999999873
No 116
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.84 E-value=59 Score=27.56 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCeEEEee--------------------------------ecc-----hhHHHHHHhhhcCCeEEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSH--------------------------------SFS-----DEISTALAKLKETDVRIIL 52 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~--------------------------------sf~-----~d~~~~l~~LK~~d~RIIi 52 (146)
+.++++.++++||-+.... .|. .||..-++.|++++.|+++
T Consensus 26 v~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~l 103 (340)
T cd06597 26 VMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKVLL 103 (340)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEEEE
Confidence 5678899999999876621 122 2689999999999999976
No 117
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=38.77 E-value=49 Score=28.84 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEe
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLII 82 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~ 82 (146)
.+++.+|+..|.+|+..|... +++|+.-. .+++||++.+-+..|-.|||.. |-+-|=|-+
T Consensus 244 ~evE~~~q~~G~~IVrPEtl~--~~eQ~~LF--r~AkvIvG~~GS~laNavF~~~------~~kvvEI~~ 303 (368)
T COG4421 244 EEVERLLQRSGLTIVRPETLG--PREQARLF--RKAKVIVGPHGSGLANAVFAAP------GCKVVEIQP 303 (368)
T ss_pred HHHHHHHHhcCcEEEechhcC--HHHHHHHh--hcceEEeccccchhhhheecCC------CceEEEecc
Confidence 346778999999999987654 44554444 4799999999999999999853 444554444
No 118
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=38.19 E-value=1.4e+02 Score=24.88 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=52.9
Q ss_pred HHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCC-----CCCeEEEEeccCCC--cccC--CCC--CCCHHHHHHhhc
Q psy3581 38 TALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMI-----GRKYQWLIIGMYSE--SWWN--GSL--PCPIEELVTALD 106 (146)
Q Consensus 38 ~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~-----g~~YVWIl~gwy~~--~Ww~--~~~--~Ct~~qi~~a~~ 106 (146)
..+...++.++|+.+.|.....+..++.+|.+.|+. .|.|.++-...+.. .++. .++ .=..+.+.++++
T Consensus 137 r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~ 216 (337)
T cd01302 137 RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVK 216 (337)
T ss_pred HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHh
Confidence 334444457899999999999999999999998864 67887776554421 2221 111 113466777775
Q ss_pred -c---eeEeeecccCC
Q psy3581 107 -G---CILTDLLPLST 118 (146)
Q Consensus 107 -g---~i~~~~~~~~~ 118 (146)
| .|+.+..|...
T Consensus 217 ~G~id~i~sDh~p~~~ 232 (337)
T cd01302 217 NGKIDTIASDHAPHSK 232 (337)
T ss_pred CCCCCEEecCCCCCCH
Confidence 3 46777777653
No 119
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=38.05 E-value=76 Score=20.71 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
+..+...|++.|+.+...-. ...+..+++.....+++++++..
T Consensus 20 a~~la~~Lr~~g~~v~~d~~-~~~l~k~i~~a~~~g~~~~iiiG 62 (94)
T cd00861 20 AEKLYAELQAAGVDVLLDDR-NERPGVKFADADLIGIPYRIVVG 62 (94)
T ss_pred HHHHHHHHHHCCCEEEEECC-CCCcccchhHHHhcCCCEEEEEC
Confidence 45567778888888855322 34666777777777776555544
No 120
>KOG2730|consensus
Probab=37.83 E-value=47 Score=27.62 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=31.1
Q ss_pred CCeEEEEEEccHHHHHHHHHHHHHcCCCC-CCeEEEEeccC
Q psy3581 46 TDVRIILGNFNEFWAKMIFCEAYRIGMIG-RKYQWLIIGMY 85 (146)
Q Consensus 46 ~d~RIIi~~~~~~~a~~vfC~AYklgm~g-~~YVWIl~gwy 85 (146)
+..+||=+...|. ++-|.+..+-.|| |.+||++.|-.
T Consensus 115 ~~~~VisIdiDPi---kIa~AkhNaeiYGI~~rItFI~GD~ 152 (263)
T KOG2730|consen 115 QGPYVIAIDIDPV---KIACARHNAEVYGVPDRITFICGDF 152 (263)
T ss_pred hCCeEEEEeccHH---HHHHHhccceeecCCceeEEEechH
Confidence 4578887887774 7899999999999 99999999853
No 121
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.29 E-value=1.2e+02 Score=23.02 Aligned_cols=17 Identities=6% Similarity=0.370 Sum_probs=7.2
Q ss_pred HHhhhcCCeEEEEEEcc
Q psy3581 40 LAKLKETDVRIILGNFN 56 (146)
Q Consensus 40 l~~LK~~d~RIIi~~~~ 56 (146)
++.+++.++.|+++.+-
T Consensus 92 ~~~I~~~~pdiv~vglG 108 (171)
T cd06533 92 IERINASGADILFVGLG 108 (171)
T ss_pred HHHHHHcCCCEEEEECC
Confidence 34444444444444443
No 122
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=37.19 E-value=88 Score=20.76 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=27.8
Q ss_pred hHHHHHHHHHh----CCCeEEEeeecchhHHHHHHhhhcCC-eEEEEEEccHH
Q psy3581 11 AHNKLLAEMLD----SGIDVMVSHSFSDEISTALAKLKETD-VRIILGNFNEF 58 (146)
Q Consensus 11 ~~~~L~~~l~~----~ni~v~~~~sf~~d~~~~l~~LK~~d-~RIIi~~~~~~ 58 (146)
....+.+.|++ ..+.+...+.-..++.+.|+.|++.+ .||+++-+.+.
T Consensus 18 ~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 18 DIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 34445555544 33444333222457778899998777 67777666554
No 123
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=37.06 E-value=88 Score=19.82 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecc--------hhHHHHHHhhh
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFS--------DEISTALAKLK 44 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~--------~d~~~~l~~LK 44 (146)
-.+..+.+.|.++||+|....++. +|...+++.|+
T Consensus 22 Gv~a~i~~~La~~~I~i~~isS~~~~~ilV~~~~~~~A~~~L~ 64 (65)
T PF13840_consen 22 GVAAKIFSALAEAGINIFMISSEISISILVKEEDLEKAVEALH 64 (65)
T ss_dssp HHHHHHHHHHHHTTS-ECEEEESSEEEEEEEGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCEEEEEEeeeEEEEEeHHHHHHHHHHhc
Confidence 345678889999999987766554 35666666554
No 124
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=36.91 E-value=2.2e+02 Score=23.40 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=46.0
Q ss_pred HHHHHHHHhC-CCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccH-HHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 13 NKLLAEMLDS-GIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNE-FWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 13 ~~L~~~l~~~-ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~-~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
+-+.+.-++. |+++...+... .+....++.+.+.++.+|+++... ..+..-..+-| |+=.|++.+.+..
T Consensus 23 ~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~vA~~y------Pd~~F~~~d~~~~ 96 (306)
T PF02608_consen 23 EGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQEVAKEY------PDTKFIIIDGYID 96 (306)
T ss_dssp HHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHHHHTC-------TTSEEEEESS---
T ss_pred HHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHC------CCCEEEEEecCcC
Confidence 3455566667 99999999987 477788999999999999998866 33333333333 6667777776555
Q ss_pred c
Q psy3581 88 S 88 (146)
Q Consensus 88 ~ 88 (146)
.
T Consensus 97 ~ 97 (306)
T PF02608_consen 97 A 97 (306)
T ss_dssp S
T ss_pred C
Confidence 3
No 125
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=36.60 E-value=67 Score=22.13 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeecchhHHHHH--HhhhcCCeEEEEEEccHH
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSFSDEISTAL--AKLKETDVRIILGNFNEF 58 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l--~~LK~~d~RIIi~~~~~~ 58 (146)
.++.+.|.+.+++.|+++.....=..-+...| ..+++.|.=|+++....+
T Consensus 15 ~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~ 66 (96)
T cd05569 15 YMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVD 66 (96)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCc
Confidence 35667899999999999865544333334444 455666665555554443
No 126
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=36.44 E-value=1.4e+02 Score=20.30 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHHHHHhhh-cCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLK-ETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK-~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
++++.-|+-.|++......=.++....|++|. +.+..||++.-.-....+=-=..++.....|
T Consensus 7 ~~~v~gFrLaGv~~~~~~~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~~~~~~P 70 (95)
T PF01990_consen 7 RDTVLGFRLAGVEGVYVNTDPEEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYREESSLP 70 (95)
T ss_dssp HHHHHHHHHTTSEEEEESHSHHHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHcCCCCccCCCCHHHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHHhccCCc
Confidence 57888899999999665412345666777776 7899999987655333333333443344444
No 127
>KOG0259|consensus
Probab=36.23 E-value=17 Score=32.35 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=64.1
Q ss_pred HHHhH-HHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEE
Q psy3581 8 MYRAH-NKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81 (146)
Q Consensus 8 fs~~~-~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl 81 (146)
|+..+ +.+.+..++.||=|++.|-+. +.|-..+.++ ...+-||-...-+ =-|+.
T Consensus 216 ys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~f-ssiVPVitlggis-------------------KrW~V 275 (447)
T KOG0259|consen 216 YSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKF-SSIVPVITLGGIS-------------------KRWIV 275 (447)
T ss_pred ccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhc-cccCceEeecccc-------------------ccccc
Confidence 44444 557777888999999888654 5676666666 4455555433222 14888
Q ss_pred eccCCCcccCC--CCCC-CHHHHHHhhcce--eEeeecccCCCCCcceeccchhhhhh
Q psy3581 82 IGMYSESWWNG--SLPC-PIEELVTALDGC--ILTDLLPLSTSGEITVSGIVSTVLLS 134 (146)
Q Consensus 82 ~gwy~~~Ww~~--~~~C-t~~qi~~a~~g~--i~~~~~~~~~~~~~tiSG~T~~~~~~ 134 (146)
|||--. |-.. +.+- .+.-+.++++.. +...+..+-+..-++|=+.||++|++
T Consensus 276 PGWRlG-Wi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~ 332 (447)
T KOG0259|consen 276 PGWRLG-WIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFD 332 (447)
T ss_pred CCceee-eEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHH
Confidence 888443 5422 1111 222233444443 34455555556678999999999987
No 128
>PHA02754 hypothetical protein; Provisional
Probab=34.73 E-value=45 Score=21.90 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeec
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSF 32 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf 32 (146)
|+.+|.+|.+.|.++||.|-....+
T Consensus 16 Fke~MRelkD~LSe~GiYi~RIkai 40 (67)
T PHA02754 16 FKEAMRELKDILSEAGIYIDRIKAI 40 (67)
T ss_pred HHHHHHHHHHHHhhCceEEEEEEEE
Confidence 7889999999999999998654433
No 129
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=34.70 E-value=1.5e+02 Score=24.60 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcCCeEEEEEE-----ccHHHHHHHHHHHHHcCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKETDVRIILGN-----FNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~d~RIIi~~-----~~~~~a~~vfC~AYklgm 72 (146)
+..|.+.|.+.|+++-......||+.+ +|+.+.+. +.++|.. ..-+.....+++|....+
T Consensus 23 a~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~g~~l 90 (255)
T COG1058 23 AAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKALGRPL 90 (255)
T ss_pred HHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHhCCCc
Confidence 456889999999999888888887654 56666666 7777743 344667777777664433
No 130
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=34.53 E-value=1.3e+02 Score=19.55 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCC-eEEEeeecchhHHHHHHhhhcCCeEEEEEEc--cHHHHHHHHHHHHHcC
Q psy3581 12 HNKLLAEMLDSGI-DVMVSHSFSDEISTALAKLKETDVRIILGNF--NEFWAKMIFCEAYRIG 71 (146)
Q Consensus 12 ~~~L~~~l~~~ni-~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~--~~~~a~~vfC~AYklg 71 (146)
...+.+.|+..|+ .+. ..+++.+.++.++.....+|++.. ....+..++++..+.+
T Consensus 11 ~~~l~~~l~~~~~~~v~----~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 11 RELLEKLLERAGYEEVT----TASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp HHHHHHHHHHTTEEEEE----EESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCEEE----EECCHHHHHHHhcccCceEEEEEeeecccccccccccccccc
Confidence 3456677788888 442 457788888888888899998875 3355777777776666
No 131
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=34.45 E-value=2.1e+02 Score=21.77 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCeEEEeeecch--hHHHHHHhhhcCCeEEEEEEcc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSD--EISTALAKLKETDVRIILGNFN 56 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~--d~~~~l~~LK~~d~RIIi~~~~ 56 (146)
...+.+.+.+.+.+++....|.+ .+...++.+|+.+.+|.+....
T Consensus 82 ~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~ 128 (199)
T PF06414_consen 82 AEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVA 128 (199)
T ss_dssp HHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEE
Confidence 35567777889999999888874 4445789999988665554443
No 132
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=34.35 E-value=2.1e+02 Score=24.01 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCC-eEEEEEEccHHH-------HHHHHHHHHHcCCCCCCeEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETD-VRIILGNFNEFW-------AKMIFCEAYRIGMIGRKYQWL 80 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d-~RIIi~~~~~~~-------a~~vfC~AYklgm~g~~YVWI 80 (146)
+..|.+.|.+.+.++....++. ....+.|+.|++.+ -||+++-+||.- +..-+++|.+..-..++..+|
T Consensus 75 a~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i 154 (316)
T PF00762_consen 75 AEALQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFI 154 (316)
T ss_dssp HHHHHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE
T ss_pred HHHHHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3457777877765565555654 46788999999876 688888887743 566777777763344555554
Q ss_pred EeccCCCcccCCCCCCCHHHHHHhhcce
Q psy3581 81 IIGMYSESWWNGSLPCPIEELVTALDGC 108 (146)
Q Consensus 81 l~gwy~~~Ww~~~~~Ct~~qi~~a~~g~ 108 (146)
++|+.+.- -+++-.+.+.++++..
T Consensus 155 -~~~~~~p~---yi~a~~~~i~~~l~~~ 178 (316)
T PF00762_consen 155 -PSFYDHPA---YIEALAERIREALERF 178 (316)
T ss_dssp ----TT-HH---HHHHHHHHHHHHHTTS
T ss_pred -CCccCCHH---HHHHHHHHHHHHHHhc
Confidence 44443311 1667777777777653
No 133
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=34.16 E-value=1.3e+02 Score=24.36 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=41.2
Q ss_pred chhHHHHHHhhhcCCeEEEEE-EccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCcccCCCCCCCHHHHHHhhcc
Q psy3581 33 SDEISTALAKLKETDVRIILG-NFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWWNGSLPCPIEELVTALDG 107 (146)
Q Consensus 33 ~~d~~~~l~~LK~~d~RIIi~-~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww~~~~~Ct~~qi~~a~~g 107 (146)
.+||.+.|..+++.| |++. ...|+....+-=.|.+ .|.+.+ |+|+|-..-| ...|+.+.++.
T Consensus 39 Id~pee~Lp~i~~~D--l~I~y~lHPDl~~~l~~~~~e---~g~kav-Ivp~~~~~~g-------~~~~lk~~~e~ 101 (217)
T PF02593_consen 39 IDDPEEYLPKIPEAD--LLIAYGLHPDLTYELPEIAKE---AGVKAV-IVPSESPKPG-------LRRQLKKQLEE 101 (217)
T ss_pred ccChHHHccCCCCCC--EEEEeccCchhHHHHHHHHHH---cCCCEE-EEecCCCccc-------hHHHHHHHHHh
Confidence 367999999977666 4444 5667766666555555 677777 8999977733 45555555554
No 134
>PRK13938 phosphoheptose isomerase; Provisional
Probab=34.08 E-value=1.8e+02 Score=22.78 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCCCCC
Q psy3581 60 AKMIFCEAYRIGMIGRK 76 (146)
Q Consensus 60 a~~vfC~AYklgm~g~~ 76 (146)
..+++|+..+..|+.|+
T Consensus 179 ~~h~l~~~v~~~l~~~~ 195 (196)
T PRK13938 179 FIHAISEHVEHALFAPR 195 (196)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 35677777777777664
No 135
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.69 E-value=1.9e+02 Score=22.49 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=39.0
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEEEE-ccHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIILGN-FNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi~~-~~~~~a~~vfC~AYklgm 72 (146)
|....+.+.+.+++.|..+....+- .|+. ..++.+...++.-|++. ..++....++.++.+.|.
T Consensus 14 ~~~~~~gi~~~~~~~G~~~~~~~~~-~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~i 81 (272)
T cd06313 14 CAQGKQAADEAGKLLGVDVTWYGGA-LDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGI 81 (272)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCC
Confidence 4455677888999999999876443 2444 34666666665544443 334444556666666544
No 136
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=32.66 E-value=2e+02 Score=23.97 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHHcCC
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKETDVRIILGNF-NEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYklgm 72 (146)
......+.+.+++.|+++.....-..|+.. .|+.+-++++--|++.. .++....++-+|.+.|+
T Consensus 39 ~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gI 106 (336)
T PRK15408 39 TSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGV 106 (336)
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCC
Confidence 334456778888889888753222223333 35666666665555543 33333556666666654
No 137
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.37 E-value=1.6e+02 Score=19.99 Aligned_cols=79 Identities=10% Similarity=-0.103 Sum_probs=47.5
Q ss_pred hHHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHHcCCCCCCeEEEEeccC
Q psy3581 7 LMYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF-NEFWAKMIFCEAYRIGMIGRKYQWLIIGMY 85 (146)
Q Consensus 7 ~fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYklgm~g~~YVWIl~gwy 85 (146)
.+.+...-+...|+++|.+|..- ....++.+-++.+++.+.++|.+.. +.........-+-...-..|+-.=++-|.+
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred chhHHHHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 35567778889999999998643 3334556677888888999988877 433322222222223334455444555554
Q ss_pred C
Q psy3581 86 S 86 (146)
Q Consensus 86 ~ 86 (146)
.
T Consensus 91 ~ 91 (121)
T PF02310_consen 91 A 91 (121)
T ss_dssp S
T ss_pred h
Confidence 3
No 138
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.29 E-value=2.2e+02 Score=21.41 Aligned_cols=16 Identities=6% Similarity=-0.228 Sum_probs=7.1
Q ss_pred HHhhhcCCeEEEEEEc
Q psy3581 40 LAKLKETDVRIILGNF 55 (146)
Q Consensus 40 l~~LK~~d~RIIi~~~ 55 (146)
++.+.+.++.+|+++.
T Consensus 70 ~~~~~~aGad~i~~h~ 85 (202)
T cd04726 70 AEMAFKAGADIVTVLG 85 (202)
T ss_pred HHHHHhcCCCEEEEEe
Confidence 3444444444444443
No 139
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=31.75 E-value=75 Score=26.57 Aligned_cols=61 Identities=7% Similarity=-0.054 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCeEEEee----ecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCC
Q psy3581 14 KLLAEMLDSGIDVMVSH----SFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~----sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g 74 (146)
++.+..+++||.+..-. +-.++-...++.|++.++-+|++..|...-..-||.+|+.|+..
T Consensus 132 ~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiN 196 (289)
T PRK13010 132 DLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAIN 196 (289)
T ss_pred hHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCcee
Confidence 45677788899875421 11112233478899999999999999998899999999877654
No 140
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.26 E-value=1.4e+02 Score=20.26 Aligned_cols=42 Identities=21% Similarity=0.478 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhH---HHHHHhhhcCCeEEEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEI---STALAKLKETDVRIILG 53 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~---~~~l~~LK~~d~RIIi~ 53 (146)
+.++...+-++|+.|...-.+..++ ..-++..++++.++.++
T Consensus 75 h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 75 HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 3444555555555555555554322 22344444445554443
No 141
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=31.07 E-value=2.5e+02 Score=21.72 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=41.4
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecch-hHHHHHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHHcC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSD-EISTALAKLKETDVRIILGNF-NEFWAKMIFCEAYRIG 71 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~-d~~~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYklg 71 (146)
|....+.+.+.+++.|.++....+... .....++.+.++++.-|++.. .+.....++.++.+.|
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~ 79 (289)
T cd01540 14 FQTEWKFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYN 79 (289)
T ss_pred HHHHHHHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhCC
Confidence 455567788999999999876544311 122456777788777555543 2344566777777765
No 142
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=30.65 E-value=1.1e+02 Score=21.84 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEE
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIIL 52 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi 52 (146)
....-|.+.|++.|+++....-..+|+. ++|+.+.+ ++.||+
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~-~~dlii 62 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALE-RADLVI 62 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh-CCCEEE
Confidence 3445678889999999888777777665 44544432 244444
No 143
>PRK14059 hypothetical protein; Provisional
Probab=30.59 E-value=2.7e+02 Score=22.57 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHHHHHhC--CCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 15 LLAEMLDS--GIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 15 L~~~l~~~--ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
..+.|+.. |++++....-.-|+...++.|++.+.+=+++..-+ .+..+..+.|+..+=++.+.|-....
T Consensus 144 ~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveGG~----~l~~~fl~~~LvDel~l~i~P~ilG~ 214 (251)
T PRK14059 144 RRRRLAGLAEVADVVVAGPDTVDLAAAVAALAARGLRRILCEGGP----TLLGQLLAADLVDELCLTIAPVLAGG 214 (251)
T ss_pred HHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhCCCCEEEEechH----HHHHHHHHcCCCeEEEEEEccEEECC
Confidence 34455443 78876432112478889999999998877776655 45555668899999888888776655
No 144
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=30.34 E-value=1e+02 Score=23.74 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=23.3
Q ss_pred hhHHHHHHhhhcCCeEEEEEEc--cHHHHHHHH
Q psy3581 34 DEISTALAKLKETDVRIILGNF--NEFWAKMIF 64 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~--~~~~a~~vf 64 (146)
.|....|+.||+.+++|-++.- .|+.|+.++
T Consensus 48 pdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L 80 (169)
T PF12689_consen 48 PDVPEILQELKERGVKLAVASRTDEPDWARELL 80 (169)
T ss_dssp TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH
T ss_pred cCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH
Confidence 6888899999999999999994 467788777
No 145
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=30.28 E-value=2.5e+02 Score=21.39 Aligned_cols=60 Identities=17% Similarity=0.025 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
+.+|.+..++.|++|... +.-+.+-+.+|+..-+.|++..-+..-..-+=.++.+|+-..
T Consensus 75 Ig~l~~lae~~g~~v~i~----~Ggt~ar~~ik~~~p~~iigVAC~~dL~~g~~~~~~~~ip~~ 134 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIA----TGGTLARKIIKEYRPKAIIGVACERDLISGIQDLKPLGIPVQ 134 (158)
T ss_pred hhHHHHHHHHcCCEEEEE----cChHHHHHHHHHhCCCEEEEEechHHHHHHHHHHhhcCCCee
Confidence 568889999999997443 333445566777777799999999887777778888766443
No 146
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.24 E-value=1.2e+02 Score=25.27 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhCCCeEEEe----------------eecc------hhHHHHHHhhhcCCeEEEEEEc-cHHHHHHHHHHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVS----------------HSFS------DEISTALAKLKETDVRIILGNF-NEFWAKMIFCEA 67 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~----------------~sf~------~d~~~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~A 67 (146)
.+.++++.++++||-+..- -.|. .||..-++.||+++.|+++..- +.......+=++
T Consensus 25 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~ 104 (317)
T cd06598 25 EVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEA 104 (317)
T ss_pred HHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHH
Confidence 3578889999999976542 0233 4799999999999999988543 212234567777
Q ss_pred HHcCC
Q psy3581 68 YRIGM 72 (146)
Q Consensus 68 Yklgm 72 (146)
.+.|.
T Consensus 105 ~~~g~ 109 (317)
T cd06598 105 VKAGA 109 (317)
T ss_pred HhCCC
Confidence 88776
No 147
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.89 E-value=1.1e+02 Score=25.47 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCeEEEee--ecc-hhHHH-HHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCC
Q psy3581 14 KLLAEMLDSGIDVMVSH--SFS-DEIST-ALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~--sf~-~d~~~-~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g 74 (146)
++....+++||.+..-. ... .+... .++.|++.++-+|++..|...-..-|+++++.|+..
T Consensus 128 ~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiN 192 (286)
T PRK06027 128 DLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIIN 192 (286)
T ss_pred hHHHHHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCcee
Confidence 34556788899886521 122 22333 367799999999999999998899999999876543
No 148
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.86 E-value=1.5e+02 Score=24.77 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhCCCeEEEee--------------ecc------hhHHHHHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSH--------------SFS------DEISTALAKLKETDVRIILGNF-NEFWAKMIFCEAYR 69 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~--------------sf~------~d~~~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYk 69 (146)
-+.++++.++++||-+..-. .|. .||..-++.|++++.|+++-.- +.......+=++.+
T Consensus 30 ~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~ 109 (317)
T cd06599 30 ALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKE 109 (317)
T ss_pred HHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHH
Confidence 35677889999998664431 233 3789999999999999986222 11222356777788
Q ss_pred cCCC
Q psy3581 70 IGMI 73 (146)
Q Consensus 70 lgm~ 73 (146)
.|..
T Consensus 110 ~g~~ 113 (317)
T cd06599 110 AGAF 113 (317)
T ss_pred CCcE
Confidence 7754
No 149
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=29.73 E-value=1.2e+02 Score=25.64 Aligned_cols=62 Identities=10% Similarity=0.090 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhCCCeEEEeee----------cc------hhH--HHHHHhhhcCCeEEEEEEccH-H-----HHHHHHHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHS----------FS------DEI--STALAKLKETDVRIILGNFNE-F-----WAKMIFCE 66 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~s----------f~------~d~--~~~l~~LK~~d~RIIi~~~~~-~-----~a~~vfC~ 66 (146)
.+.++++.++++||-+..-.- |. .|| ..-++.||+++.|+++..-.. . .-..++-+
T Consensus 25 ~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 25 EVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 356788899999998755221 11 378 889999999999988754211 1 12566777
Q ss_pred HHHcCC
Q psy3581 67 AYRIGM 72 (146)
Q Consensus 67 AYklgm 72 (146)
|.+.|.
T Consensus 105 ~~~~g~ 110 (339)
T cd06602 105 GLEMDV 110 (339)
T ss_pred HHHCCe
Confidence 888774
No 150
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=29.66 E-value=88 Score=21.55 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=16.8
Q ss_pred HHHhhhcCCeEEEEEEccHHHHHHHHH
Q psy3581 39 ALAKLKETDVRIILGNFNEFWAKMIFC 65 (146)
Q Consensus 39 ~l~~LK~~d~RIIi~~~~~~~a~~vfC 65 (146)
....|++.+++++++........+-||
T Consensus 5 ~~~~l~~~gv~lv~I~~g~~~~~~~f~ 31 (115)
T PF13911_consen 5 RKPELEAAGVKLVVIGCGSPEGIEKFC 31 (115)
T ss_pred hHHHHHHcCCeEEEEEcCCHHHHHHHH
Confidence 355666667777766666654566666
No 151
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=29.66 E-value=3.8e+02 Score=23.43 Aligned_cols=67 Identities=25% Similarity=0.376 Sum_probs=43.4
Q ss_pred HHHHhCCCeEEEeeecchhHHHHHHhhhcCC---eEEEE--------------EEccHHHHHHHHHHHHHcCCCCCCeEE
Q psy3581 17 AEMLDSGIDVMVSHSFSDEISTALAKLKETD---VRIIL--------------GNFNEFWAKMIFCEAYRIGMIGRKYQW 79 (146)
Q Consensus 17 ~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d---~RIIi--------------~~~~~~~a~~vfC~AYklgm~g~~YVW 79 (146)
-+|++.|.+--...+... +.++.||+.+ +|+-+ ++-....+..+--+|.++||-
T Consensus 49 ~~lE~~Gvkf~d~ng~~q---D~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmK------ 119 (403)
T COG3867 49 IELENSGVKFFDTNGVRQ---DALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMK------ 119 (403)
T ss_pred HHHHHcCceEEccCChHH---HHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcE------
Confidence 456667766654444433 4566667665 55554 334456678888899999996
Q ss_pred EEeccCCCcccCC
Q psy3581 80 LIIGMYSESWWNG 92 (146)
Q Consensus 80 Il~gwy~~~Ww~~ 92 (146)
.+.+.+-++||..
T Consensus 120 Vl~dFHYSDfwaD 132 (403)
T COG3867 120 VLLDFHYSDFWAD 132 (403)
T ss_pred EEeeccchhhccC
Confidence 5677766778854
No 152
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=29.52 E-value=1.9e+02 Score=23.91 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=51.6
Q ss_pred Hhhhc-CCeEEEEEEccHHHHHHHHHHHHHcCCCC---CCeEEEEeccCC----CcccC--CC--CCCCHHHHHHhhcc-
Q psy3581 41 AKLKE-TDVRIILGNFNEFWAKMIFCEAYRIGMIG---RKYQWLIIGMYS----ESWWN--GS--LPCPIEELVTALDG- 107 (146)
Q Consensus 41 ~~LK~-~d~RIIi~~~~~~~a~~vfC~AYklgm~g---~~YVWIl~gwy~----~~Ww~--~~--~~Ct~~qi~~a~~g- 107 (146)
.-.++ -++||+++|+....+..+..+|-+ +.+. |.|..+-..-+. ..|+. ++ .....+.|.+++..
T Consensus 155 ~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~-~vt~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G 233 (335)
T cd01294 155 PLAQRFPKLKIVLEHITTADAVEYVKSCNE-NVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSG 233 (335)
T ss_pred HHHHHcCCCeEEEecccHHHHHHHHHhCCC-CcEEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcC
Confidence 33444 399999999999999998876554 5643 667666654442 23443 22 34456777787764
Q ss_pred ----eeEeeecccCCCC
Q psy3581 108 ----CILTDLLPLSTSG 120 (146)
Q Consensus 108 ----~i~~~~~~~~~~~ 120 (146)
.|+.|+.|...+.
T Consensus 234 ~id~~i~SDHaP~~~~~ 250 (335)
T cd01294 234 HPKFFLGSDSAPHPKSN 250 (335)
T ss_pred CCCeEEECCCCCCCCcc
Confidence 4788888886543
No 153
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=29.26 E-value=1.6e+02 Score=22.12 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=57.6
Q ss_pred ehhHHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhh--hcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEe
Q psy3581 5 RILMYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKL--KETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLII 82 (146)
Q Consensus 5 ~~~fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~L--K~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~ 82 (146)
+-.|..+.+.|.+.++++|..|.+.. |+.+.|++- ++.+==.|++...|..|-.+|-+=...|+.=|-.+=+--
T Consensus 18 ~~~~~E~i~~l~~~lk~~G~~V~~~i----d~~e~l~~~g~~~~~p~~Il~~cnP~~g~~ll~~~p~~gl~lPcrv~V~e 93 (137)
T COG3439 18 KLSFDETIERLEEKLKKNGFKVFTEI----DHAEALKNAGVLDIPPYTILVFCNPKAGTPLLSKNPEFGLLLPCRVLVYE 93 (137)
T ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEe----cHHHHHHhcCcCCCCCeEEEEEcCCcccchhhccChhhhccCCeEEEEEE
Confidence 56789999999999999999997753 445555332 345566777888888899999988899998888776554
No 154
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=29.21 E-value=2.1e+02 Score=24.99 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=55.2
Q ss_pred HHHhHHH-HHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHc-CCCCCCeEEEEe
Q psy3581 8 MYRAHNK-LLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRI-GMIGRKYQWLII 82 (146)
Q Consensus 8 fs~~~~~-L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYkl-gm~g~~YVWIl~ 82 (146)
|....|. +.+.+++.|.+|+...-++ +|....++++|+.+--+|+-..-- .+..-|++||+. |+..++
T Consensus 146 ~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~~Pd~V~stlvG-~s~~aF~r~~~~aG~~~~~------ 218 (363)
T PF13433_consen 146 YPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAAKPDFVFSTLVG-DSNVAFYRAYAAAGLDPER------ 218 (363)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHHT-SEEEEE--T-TCHHHHHHHHHHHH-SSS-------
T ss_pred chHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhhCCCEEEEeCcC-CcHHHHHHHHHHcCCCccc------
Confidence 4444555 6678889999999987776 577888999988887766655544 566678888874 432211
Q ss_pred ccCCCcccCCC-CCCC--HHHHH----HhhcceeEeeecccCC
Q psy3581 83 GMYSESWWNGS-LPCP--IEELV----TALDGCILTDLLPLST 118 (146)
Q Consensus 83 gwy~~~Ww~~~-~~Ct--~~qi~----~a~~g~i~~~~~~~~~ 118 (146)
.+ .+|+ ..|+. +++.|+++.-++.-+.
T Consensus 219 ---------~Pi~S~~~~E~E~~~~g~~~~~Gh~~~~~YFqsi 252 (363)
T PF13433_consen 219 ---------IPIASLSTSEAELAAMGAEAAAGHYTSAPYFQSI 252 (363)
T ss_dssp -----------EEESS--HHHHTTS-HHHHTT-EEEES--TT-
T ss_pred ---------CeEEEEecCHHHHhhcChhhcCCcEEeehhhhhC
Confidence 12 3454 33443 3677888877766443
No 155
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=29.18 E-value=1.5e+02 Score=24.85 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhCCCeEEEeeecch-----hHHHHHHhhhcCCeEEEEEEc--cHHHHHHHHHHHHHcC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSD-----EISTALAKLKETDVRIILGNF--NEFWAKMIFCEAYRIG 71 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~-----d~~~~l~~LK~~d~RIIi~~~--~~~~a~~vfC~AYklg 71 (146)
..+.+.+.|++.|+++..-..+.. +..+.++.+++.++-.||+.. ..-.+.|+....+..+
T Consensus 37 ~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~ 104 (366)
T PF00465_consen 37 LVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANP 104 (366)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCC
Confidence 568889999999999977776764 456778899988877777554 5556777777666643
No 156
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=29.05 E-value=1.1e+02 Score=20.82 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=41.0
Q ss_pred hHHHhHHHHHHHHHhCCCeEEEeeecc---------------hhH--HHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHH
Q psy3581 7 LMYRAHNKLLAEMLDSGIDVMVSHSFS---------------DEI--STALAKLKETDVRIILGNFNEFWAKMIFCEAYR 69 (146)
Q Consensus 7 ~fs~~~~~L~~~l~~~ni~v~~~~sf~---------------~d~--~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYk 69 (146)
.+......+.+.|++.++.|+.-+.=. .|+ ...|+.+.-.+++.+++....+..-...|..-|
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r 84 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIALLAR 84 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHH
Confidence 345566777778888776665543322 122 234666666778777777766655555555444
Q ss_pred cCCCCCCeEEE
Q psy3581 70 IGMIGRKYQWL 80 (146)
Q Consensus 70 lgm~g~~YVWI 80 (146)
. +++..++..
T Consensus 85 ~-~~~~~~ii~ 94 (116)
T PF02254_consen 85 E-LNPDIRIIA 94 (116)
T ss_dssp H-HTTTSEEEE
T ss_pred H-HCCCCeEEE
Confidence 3 444444443
No 157
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=28.79 E-value=2.3e+02 Score=23.80 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=28.0
Q ss_pred hCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHH
Q psy3581 21 DSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMI 63 (146)
Q Consensus 21 ~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~v 63 (146)
+.+..++.. +|..-+...++.+++.+.++|..-.....|+++
T Consensus 111 ~~~~~~v~~-~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a 152 (330)
T PF03060_consen 111 EAKPDVVSF-GFGLPPPEVIERLHAAGIKVIPQVTSVREARKA 152 (330)
T ss_dssp HS--SEEEE-ESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred ccceEEEEe-ecccchHHHHHHHHHcCCccccccCCHHHHHHh
Confidence 345557553 555544778899999999999988888888753
No 158
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=28.77 E-value=76 Score=26.53 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
.+.+..+++||.+...+....+ +.++.|++.+.-+|++..+...-.+-+.+..+.|.
T Consensus 47 ~v~~~A~~~~Ipv~~~~~~~~~--~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~ 103 (313)
T TIGR00460 47 PVKVLAEEKGIPVFQPEKQRQL--EELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGC 103 (313)
T ss_pred hHHHHHHHcCCCEEecCCCCcH--HHHHHHHhhCCCEEEEccchhhCCHHHHhhccCCE
Confidence 3566666777777655444322 45777888888999988888777777777777554
No 159
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=28.76 E-value=1.1e+02 Score=27.41 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
+......+.+.|++.|++++.-+. |+. .++.+++.|.+++.+..
T Consensus 425 ~G~~G~~la~~L~~~g~~vvvId~---d~~-~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 425 YGRVGSLLGEKLLAAGIPLVVIET---SRT-RVDELRERGIRAVLGNA 468 (558)
T ss_pred CChHHHHHHHHHHHCCCCEEEEEC---CHH-HHHHHHHCCCeEEEcCC
Confidence 445557788889888888866543 322 23344444444444433
No 160
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=28.74 E-value=1.9e+02 Score=22.01 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecch----hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHH
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSD----EISTALAKLKETDVRIILGNFNEFWAKMIFCEAY 68 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~----d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AY 68 (146)
...|.+.|++.|++|..-.-... .+....+.++..+..+| +.+++. +.+.|.+..
T Consensus 129 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v-~ftS~~-~~~~~~~~~ 187 (231)
T PF02602_consen 129 RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAV-VFTSPS-AVRAFLELL 187 (231)
T ss_dssp CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEE-EESSHH-HHHHHHHHS
T ss_pred cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEE-EECCHH-HHHHHHHHh
Confidence 46788899999988877665554 44555666766666544 334444 444454444
No 161
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=28.44 E-value=1.1e+02 Score=19.93 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEE
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILG 53 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~ 53 (146)
.+.+.|.+.|++++-...+...+. ..|++++.+++.+
T Consensus 44 ~~~~~l~~~~v~~li~~~iG~~~~---~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGGIGEGAF---RALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHHTTESEEEESCSCHHHH---HHHHHTTSEEEES
T ss_pred hHHHHHHHcCCCEEEEeCCCHHHH---HHHHHCCCEEEEc
Confidence 466777789999988888765554 4566778888884
No 162
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=28.22 E-value=1.4e+02 Score=25.15 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCeEEEeee----------cc------hhHHHHHHhhhcCCeEEEEEEccH---HHHHHHHHHHHHcCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHS----------FS------DEISTALAKLKETDVRIILGNFNE---FWAKMIFCEAYRIGM 72 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~s----------f~------~d~~~~l~~LK~~d~RIIi~~~~~---~~a~~vfC~AYklgm 72 (146)
+.++++.++++||-+..-.- |. .||..-++.|++++.|+++..-.- +....++=+|.++|.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~ 105 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGY 105 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCe
Confidence 46788899999998755311 11 378888999999999987754311 112567888888886
Q ss_pred C
Q psy3581 73 I 73 (146)
Q Consensus 73 ~ 73 (146)
+
T Consensus 106 ~ 106 (339)
T cd06603 106 L 106 (339)
T ss_pred E
Confidence 4
No 163
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.20 E-value=2.6e+02 Score=21.04 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=51.2
Q ss_pred ehhHHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc-----cHHHHHHHHHHHHHcCCCCCCeEE
Q psy3581 5 RILMYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF-----NEFWAKMIFCEAYRIGMIGRKYQW 79 (146)
Q Consensus 5 ~~~fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~-----~~~~a~~vfC~AYklgm~g~~YVW 79 (146)
|+.-+-.+..|.+.+.+++.+|---.+=.+......++|++.--.|-++.. .+..... .+-..+-.+|+.||
T Consensus 28 r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~---i~~~I~~~~pdiv~ 104 (171)
T cd06533 28 RVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEE---IIERINASGADILF 104 (171)
T ss_pred ccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHH---HHHHHHHcCCCEEE
Confidence 566667778888899998888855544445566677788888555555442 1111112 24455668899999
Q ss_pred EEecc
Q psy3581 80 LIIGM 84 (146)
Q Consensus 80 Il~gw 84 (146)
+-.|-
T Consensus 105 vglG~ 109 (171)
T cd06533 105 VGLGA 109 (171)
T ss_pred EECCC
Confidence 99886
No 164
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=28.14 E-value=1.5e+02 Score=25.05 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCeEEEeeecc-------------hhHHHHHHhhhcCCeEEEEEEc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS-------------DEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~-------------~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
.++-.+.+++.|++++....|+ +..+..|+.+++.+.+||+...
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 3455678899999999876665 2356789999999999998775
No 165
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.03 E-value=80 Score=26.33 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCeEEEee-ecc--hhHHH-HHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCC
Q psy3581 14 KLLAEMLDSGIDVMVSH-SFS--DEIST-ALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~-sf~--~d~~~-~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g 74 (146)
++....+++||.+..-. ... .+... .++.|++.++-+|++..|...-..-||++|+.|+..
T Consensus 128 ~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiN 192 (286)
T PRK13011 128 DLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAIN 192 (286)
T ss_pred cHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEE
Confidence 45556788888875421 111 12222 367799999999999999999999999999876654
No 166
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=27.79 E-value=1.8e+02 Score=20.99 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHHhCCCeEEEe---eecc----h--hHHHHHHhhhcCCeEEEEEEccHHHHHH
Q psy3581 15 LLAEMLDSGIDVMVS---HSFS----D--EISTALAKLKETDVRIILGNFNEFWAKM 62 (146)
Q Consensus 15 L~~~l~~~ni~v~~~---~sf~----~--d~~~~l~~LK~~d~RIIi~~~~~~~a~~ 62 (146)
+.+..+++|++++.. .+.+ + ....-|+.+++..+.++++.--.-.+|.
T Consensus 27 l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~ 83 (140)
T cd03770 27 LEEYAKENGLENIRHYIDDGFSGTTFDRPGFNRMIEDIEAGKIDIVIVKDMSRLGRN 83 (140)
T ss_pred HHHHHHHCCCEEEEEEEcCCCcCCcCCCHHHHHHHHHHHcCCCCEEEEeccchhccC
Confidence 455567789876432 1222 1 2334577888887888888876666665
No 167
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.74 E-value=1.6e+02 Score=18.29 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecch--hHHHHHHhhhcCCeEEEEE
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSD--EISTALAKLKETDVRIILG 53 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~--d~~~~l~~LK~~d~RIIi~ 53 (146)
..+++++.+++.|++.++.-.-.+ ......+..++.+.++|.|
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEE
Confidence 356788888888888765433321 2233344455567777665
No 168
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.67 E-value=2e+02 Score=24.03 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEE
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWL 80 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWI 80 (146)
.++++.+.+++..++.. ++ ..|...++.+|+.+..|+........|. +|.+. |.+.+-+
T Consensus 77 ~~~~~~~~~~~v~~v~~-~~-g~p~~~i~~lk~~g~~v~~~v~s~~~a~----~a~~~---GaD~Ivv 135 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTT-GA-GNPGKYIPRLKENGVKVIPVVASVALAK----RMEKA---GADAVIA 135 (307)
T ss_pred HHHHHHHHhCCCCEEEE-cC-CCcHHHHHHHHHcCCEEEEEcCCHHHHH----HHHHc---CCCEEEE
Confidence 45667677889988764 33 4566788999999988886655665553 44555 3454433
No 169
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.30 E-value=1.3e+02 Score=23.20 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=33.6
Q ss_pred hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 35 EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 35 d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
+.++.+..+++.++.||-+...+..+.+-||+.|.+..
T Consensus 52 ~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f 89 (157)
T COG1225 52 DFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTF 89 (157)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence 45677889999999999999999999999999988753
No 170
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.28 E-value=2.7e+02 Score=20.93 Aligned_cols=19 Identities=5% Similarity=0.284 Sum_probs=9.3
Q ss_pred HHHhhhcCCeEEEEEEccH
Q psy3581 39 ALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 39 ~l~~LK~~d~RIIi~~~~~ 57 (146)
.++.+++.++.|+++.+-.
T Consensus 93 i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 93 IINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHcCCCEEEEECCC
Confidence 3445555555555544443
No 171
>KOG4667|consensus
Probab=27.16 E-value=3.7e+02 Score=22.44 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc------------------hhHHHHHHhhhcCC--eEEEEEEccHHHHHHHHHHHHHc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS------------------DEISTALAKLKETD--VRIILGNFNEFWAKMIFCEAYRI 70 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~------------------~d~~~~l~~LK~~d--~RIIi~~~~~~~a~~vfC~AYkl 70 (146)
.+..+.+.|++.||.+.. -.|+ +|....++.+.++. +-||++|.-...+..++|+-|+-
T Consensus 50 ~~~~vA~~~e~~gis~fR-fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~d 128 (269)
T KOG4667|consen 50 IMKNVAKALEKEGISAFR-FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNRVVPVILGHSKGGDVVLLYASKYHD 128 (269)
T ss_pred HHHHHHHHHHhcCceEEE-EEecCCCCcCCccccCcccchHHHHHHHHHHhccCceEEEEEEeecCccHHHHHHHHhhcC
Confidence 466788899999999854 4554 34455577776654 77899999999999999887764
Q ss_pred CCCCCCeEEEEeccC
Q psy3581 71 GMIGRKYQWLIIGMY 85 (146)
Q Consensus 71 gm~g~~YVWIl~gwy 85 (146)
+..|=-++|-|
T Consensus 129 ----~~~viNcsGRy 139 (269)
T KOG4667|consen 129 ----IRNVINCSGRY 139 (269)
T ss_pred ----chheEEccccc
Confidence 44444444433
No 172
>KOG1054|consensus
Probab=27.09 E-value=5.7e+02 Score=24.54 Aligned_cols=72 Identities=10% Similarity=0.185 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCeEEEeeecc--h---hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS--D---EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~--~---d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.+.+.+.+.++|..|.+. .+. . .....++.|..+..|-+++.-..+.-.+++-++.++|-...+|-.++...
T Consensus 167 Lqai~~~a~~~nw~VtA~-~v~~~~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHYvlaNl 243 (897)
T KOG1054|consen 167 LQAIMEAAAQNNWQVTAI-NVGNINDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHYVLANL 243 (897)
T ss_pred HHHHHHHHHhcCceEEEE-EcCCcccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEEEEeeC
Confidence 355777888899999775 443 2 25567888888888877788888888889999999999999999999654
No 173
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.93 E-value=1.1e+02 Score=20.60 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=26.6
Q ss_pred HHHHhCCC--eEEEeeecchhHHHHHHhhhcCCeEEEEEEccHH-HHHHH
Q psy3581 17 AEMLDSGI--DVMVSHSFSDEISTALAKLKETDVRIILGNFNEF-WAKMI 63 (146)
Q Consensus 17 ~~l~~~ni--~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~-~a~~v 63 (146)
..|++.|+ ++++..+..- +..+++.|++. .+-+++.+.++ .+.++
T Consensus 14 ~~l~~~g~~~~~i~t~Gt~~-~~~~~~~l~~~-~~~VIiltD~D~aG~~i 61 (81)
T cd01027 14 ESLKKLGIEAEIIETNGSII-NKETIELIKKA-YRGVIILTDPDRKGEKI 61 (81)
T ss_pred HHHHHhCCCccEEEECCCcC-CHHHHHHHHHh-CCEEEEEECCCHHHHHH
Confidence 46777777 6767666442 33667777777 45555555553 34444
No 174
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=26.75 E-value=3.8e+02 Score=22.47 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecc------hhHHHHHHhhhcCCeEEEEEE-------ccHHHHHHHHHHHHHcCC
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFS------DEISTALAKLKETDVRIILGN-------FNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~------~d~~~~l~~LK~~d~RIIi~~-------~~~~~a~~vfC~AYklgm 72 (146)
+...+|.+.|++.|..++...+|. +....+++.|++.+..+..-. -..+....++-.+.++|.
T Consensus 190 rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv 265 (321)
T TIGR03821 190 RITSGLCDLLANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGV 265 (321)
T ss_pred HhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCC
Confidence 344678888999888777555664 456678999999997775421 144556677767777665
No 175
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.54 E-value=3.2e+02 Score=21.44 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecch--hHHHHHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHHcC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSD--EISTALAKLKETDVRIILGNF-NEFWAKMIFCEAYRIG 71 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~--d~~~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYklg 71 (146)
|....+.+.+.+++.|+++....+-.+ .....++.+.+..+.-|++.. .++....++=++-+.|
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ 80 (288)
T cd01538 14 WIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAG 80 (288)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCC
Confidence 445557788889999999877554321 233556777677776555443 3333344554555544
No 176
>PRK03670 competence damage-inducible protein A; Provisional
Probab=26.34 E-value=1.6e+02 Score=24.08 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcCCeEEEEE--Ec---cHHHHHHHHHHHHH
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKETDVRIILG--NF---NEFWAKMIFCEAYR 69 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~d~RIIi~--~~---~~~~a~~vfC~AYk 69 (146)
..-|.+.|.+.|+++....-..||+.. +|+.+.+....++|. .. .-+.++...|+|..
T Consensus 22 ~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~eava~a~g 87 (252)
T PRK03670 22 SAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDDVTMLAVAEALG 87 (252)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCCchHHHHHHHhC
Confidence 345778899999999877777777654 455543333445552 22 22446666665543
No 177
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=26.11 E-value=1.6e+02 Score=21.95 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=28.6
Q ss_pred hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 35 EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 35 d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
...+.|+.+++++.++.++...+....+.+|+ ++|+
T Consensus 91 ~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~--~lg~ 126 (202)
T TIGR01490 91 EARDLIRWHKAEGHTIVLVSASLTILVKPLAR--ILGI 126 (202)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH--HcCC
Confidence 44566899999999999999988888887776 4454
No 178
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=26.04 E-value=1.2e+02 Score=21.16 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=27.5
Q ss_pred hhHHHHHHhhhcCCeEEEEEEccH--------HHHHHHHHHHHHc
Q psy3581 34 DEISTALAKLKETDVRIILGNFNE--------FWAKMIFCEAYRI 70 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~~--------~~a~~vfC~AYkl 70 (146)
.+..+.|+.|++.+.+++++.-.+ ....+-+++++.+
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l 72 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGV 72 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCC
Confidence 466778999999999999998876 5555556655443
No 179
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.88 E-value=3e+02 Score=20.87 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=22.1
Q ss_pred HHHHHHHhC--CCeEEEeeecchhHHH-HHHhhhcCCeEEEEEEccH
Q psy3581 14 KLLAEMLDS--GIDVMVSHSFSDEIST-ALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 14 ~L~~~l~~~--ni~v~~~~sf~~d~~~-~l~~LK~~d~RIIi~~~~~ 57 (146)
+.++.+++. +..+...-.+. ||.. +++.+.+.++..|.+|...
T Consensus 41 ~~i~~l~~~~~~~~i~~d~k~~-d~~~~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 41 EAVKEMKEAFPDRKVLADLKTM-DAGEYEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred HHHHHHHHHCCCCEEEEEEeec-cchHHHHHHHHHcCCCEEEEeccC
Confidence 344455443 44444433233 3332 3666777777766666554
No 180
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=25.81 E-value=1.9e+02 Score=22.16 Aligned_cols=6 Identities=0% Similarity=-0.058 Sum_probs=2.8
Q ss_pred EEEEec
Q psy3581 78 QWLIIG 83 (146)
Q Consensus 78 VWIl~g 83 (146)
|.++.+
T Consensus 166 v~v~~D 171 (196)
T cd01011 166 VRVLED 171 (196)
T ss_pred EEEecc
Confidence 444444
No 181
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=25.80 E-value=1.8e+02 Score=19.50 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=25.6
Q ss_pred HHHHhCCCeEEEeeecchhH--HH----HHHhhhcCCeEEEEEEccHHH
Q psy3581 17 AEMLDSGIDVMVSHSFSDEI--ST----ALAKLKETDVRIILGNFNEFW 59 (146)
Q Consensus 17 ~~l~~~ni~v~~~~sf~~d~--~~----~l~~LK~~d~RIIi~~~~~~~ 59 (146)
+.|+++||++.........+ .. .++.+|+.....+|...++..
T Consensus 24 ~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~ 72 (95)
T PF02142_consen 24 KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFS 72 (95)
T ss_dssp HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THH
T ss_pred HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCc
Confidence 45667787754443333322 23 789999999998888887754
No 182
>PRK01215 competence damage-inducible protein A; Provisional
Probab=25.61 E-value=2.7e+02 Score=22.83 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEEEE--c---cHHHHHHHHHHHHHcCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIILGN--F---NEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi~~--~---~~~~a~~vfC~AYklgm~g 74 (146)
..-|.+.|++.|+++....-..||+. +.|+.+.+ ++.+|+.. . .-+.++.+.++|....|.+
T Consensus 25 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-~~DlVIttGG~g~t~dD~t~eaia~~~g~~l~~ 94 (264)
T PRK01215 25 ASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID-RADVVVSTGGLGPTYDDKTNEGFAKALGVELEL 94 (264)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-CCCEEEEeCCCcCChhhhHHHHHHHHhCCCCCC
Confidence 34577889999999987777777665 55666654 33555532 2 3366888888885444433
No 183
>PF13333 rve_2: Integrase core domain
Probab=25.53 E-value=28 Score=21.25 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=22.8
Q ss_pred CHHHHHHhhcceeEeeecccCCCCCcceeccchhhhhh
Q psy3581 97 PIEELVTALDGCILTDLLPLSTSGEITVSGIVSTVLLS 134 (146)
Q Consensus 97 t~~qi~~a~~g~i~~~~~~~~~~~~~tiSG~T~~~~~~ 134 (146)
|-+|+.+++..+|-. + +. .-+-|+||.+|.+
T Consensus 19 t~eel~~~I~~YI~~--y--N~---~Rl~~lsP~eyr~ 49 (52)
T PF13333_consen 19 TREELKQAIDEYIDY--Y--NN---ERLKGLSPVEYRN 49 (52)
T ss_pred hHHHHHHHHHHHHHH--h--cc---CCCCCcCHHHHHH
Confidence 788999999988642 3 21 1155999999987
No 184
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=25.52 E-value=3e+02 Score=20.87 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=52.5
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecc------------------hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHH
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFS------------------DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYR 69 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~------------------~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYk 69 (146)
++..+--|...|++.|++++....=+ .|.+..|+.+-++|.-+++++..-+.+...+-.- +
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~vaDPe~~Y~~~~~diD~~l~~i~e~~~d~~~~FvHNDagvsY~~T~-~ 90 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVADPEKHYLKEVVDIDKCLAEIEEGDFDLIFGFVHNDAGVSYAATY-K 90 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHHSTT-SS-SEEEEHHHHHHH--TTS-SEEEEEESSHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhcCCccchhcceeeHHHHHHHhhhCCCCEEEEEEecchhHHHHHHH-H
Confidence 34455667889999999997765432 1457789999999999999999988877766432 2
Q ss_pred cCCCCCCeEEEEeccCCCcccCCCCCCCHHHHHHhhc
Q psy3581 70 IGMIGRKYQWLIIGMYSESWWNGSLPCPIEELVTALD 106 (146)
Q Consensus 70 lgm~g~~YVWIl~gwy~~~Ww~~~~~Ct~~qi~~a~~ 106 (146)
. .+..+-.=|+-| . + .+++.+.++
T Consensus 91 ~-i~~~~~~aiVFg---~-------~--~e~l~~~i~ 114 (139)
T PF09001_consen 91 A-ISNAKTIAIVFG---K-------D--AEELAETIE 114 (139)
T ss_dssp H-HH-SEEEEEEE----S----------HHHHHHHHH
T ss_pred H-HcCCCeEEEEec---C-------C--HHHHHHHhc
Confidence 2 344443334434 2 1 566666665
No 185
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.45 E-value=2.2e+02 Score=21.90 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHHH---HHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEISTA---LAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~~---l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
...|.+.|...|++.+...+ +.|..-. ++.+-+.+.-.|++...-..=..+..++-..|. .|-.+-. +
T Consensus 68 ~~~l~~~l~~~Gf~pv~~kG-~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~----~V~v~g~---~- 138 (160)
T TIGR00288 68 SDKLIEAVVNQGFEPIIVAG-DVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGK----ETIVIGA---E- 138 (160)
T ss_pred cHHHHHHHHHCCceEEEecC-cccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCC----EEEEEeC---C-
Confidence 35678888889998764333 4454433 333323444444444444334444444444433 2333321 1
Q ss_pred ccCCCCCCCHHHHHHhhcceeEe
Q psy3581 89 WWNGSLPCPIEELVTALDGCILT 111 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~ 111 (146)
..|++++.+|.+..+.+
T Consensus 139 ------~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 139 ------PGFSTALQNSADIAIIL 155 (160)
T ss_pred ------CCChHHHHHhcCeEEeC
Confidence 34777777777765543
No 186
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=25.00 E-value=3.2e+02 Score=20.92 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHhCCCeEEEeeecch--hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 16 LAEMLDSGIDVMVSHSFSD--EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 16 ~~~l~~~ni~v~~~~sf~~--d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
.+.+.+.|++++.. ... |+...|+.|++.+.+=+++..-+.. ..+.-+.||..+=+..+.|-...
T Consensus 110 ~~~~~~~g~~~i~~--~~~~~dl~~~l~~L~~~g~~~llveGG~~L----~~~fl~~~LvDel~l~i~P~ilG 176 (216)
T TIGR00227 110 VKELEDFGVEVLVL--ETKRVDLKKLMEILYEEGINSVMVEGGGTL----NGSLLKEGLVDELIVYIAPKLLG 176 (216)
T ss_pred HHHHHHCCcEEEEC--CCCCcCHHHHHHHHHHcCCCEEEEeeCHHH----HHHHHHCCCCCEEEEEECchhhC
Confidence 34567778887532 123 7888999999888766666555543 44456889998877777776655
No 187
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=24.96 E-value=3.2e+02 Score=20.95 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhH---HHHHHhhhcCCeEEEEE
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEI---STALAKLKETDVRIILG 53 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~---~~~l~~LK~~d~RIIi~ 53 (146)
|+...+.+.+.+++.|++++...+= +++ ...++.|..+++--|++
T Consensus 14 ~~~~~~~~~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi 61 (273)
T cd06309 14 RTAETKSIKDAAEKRGFDLKFADAQ-QKQENQISAIRSFIAQGVDVIIL 61 (273)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567788999999999999875332 233 34567777766654444
No 188
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=24.92 E-value=1.7e+02 Score=21.33 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCeEEEeeecchhH--HHHHHhhhcCCeEEEE
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEI--STALAKLKETDVRIIL 52 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~--~~~l~~LK~~d~RIIi 52 (146)
+|.+.|++.||+-+.-.++.+|. ......+-+.+.++++
T Consensus 102 ~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v 142 (174)
T PF00857_consen 102 DLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIV 142 (174)
T ss_dssp SHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEE
T ss_pred cccccccccccceEEEcccccCcEEehhHHHHHHCCCEEEE
Confidence 45566666666666666665542 2334444555666665
No 189
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.89 E-value=3.2e+02 Score=20.86 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=35.9
Q ss_pred HHHhHHHHHHHHHh-CCCeEEEeeecc--hhHHHHHHhhhcCCeEEEEEE-ccHHHHHHHHHHHHHcC
Q psy3581 8 MYRAHNKLLAEMLD-SGIDVMVSHSFS--DEISTALAKLKETDVRIILGN-FNEFWAKMIFCEAYRIG 71 (146)
Q Consensus 8 fs~~~~~L~~~l~~-~ni~v~~~~sf~--~d~~~~l~~LK~~d~RIIi~~-~~~~~a~~vfC~AYklg 71 (146)
|....+.+.+.+++ .|+.++...+.. +...+.++.+.+.++.-|++. ..++....++=++.+.|
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~ 81 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAG 81 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCC
Confidence 34455678888888 899987754421 223345666666665544433 33333344454555554
No 190
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.85 E-value=2.5e+02 Score=24.02 Aligned_cols=47 Identities=11% Similarity=-0.112 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHH
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKM 62 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~ 62 (146)
.+..+.+.+.++.++... + .+|.. ++.||+.+.++|.....+..|++
T Consensus 72 ~~~l~vi~e~~v~~V~~~-~-G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~ 118 (320)
T cd04743 72 AAQLAVVRAIKPTFALIA-G-GRPDQ-ARALEAIGISTYLHVPSPGLLKQ 118 (320)
T ss_pred HHHHHHHHhcCCcEEEEc-C-CChHH-HHHHHHCCCEEEEEeCCHHHHHH
Confidence 456666667888887643 3 35554 79999999999988888888866
No 191
>PRK09701 D-allose transporter subunit; Provisional
Probab=24.82 E-value=3.4e+02 Score=21.75 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeec-chhH---HHHHHhhhcCCeEEEEEE-ccHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSF-SDEI---STALAKLKETDVRIILGN-FNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf-~~d~---~~~l~~LK~~d~RIIi~~-~~~~~a~~vfC~AYklgm 72 (146)
|....+.+.+.+++.|+++.-...- .+++ ...|+.+...++--|++. ..++.....+.++.+.|+
T Consensus 39 ~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~gi 108 (311)
T PRK09701 39 WVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGI 108 (311)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCC
Confidence 4556677889999999998654221 2333 345777777666655444 333334445667766653
No 192
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.77 E-value=1.3e+02 Score=25.49 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=58.5
Q ss_pred HHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CCCcccCCCCCCCHHHHHHhhcceeEeeeccc
Q psy3581 38 TALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YSESWWNGSLPCPIEELVTALDGCILTDLLPL 116 (146)
Q Consensus 38 ~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~ 116 (146)
+..+.|+.-++++|.+-..+..-....-+|-++==..|+|.|.+... -+.|| ..+-.-|..||.+.++|- ++...-
T Consensus 99 er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~-~aH~~tT~~EI~~~~~g~--~d~fVa 175 (300)
T COG0031 99 ERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANP-EAHYETTGPEIWQQTDGK--VDAFVA 175 (300)
T ss_pred HHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccH-HHHHhhhHHHHHHHhCCC--CCEEEE
Confidence 45677888899999988744433444444444433445544433222 22222 222456899999999997 444443
Q ss_pred CCCCCcceeccchhhhhhcCCCccc
Q psy3581 117 STSGEITVSGIVSTVLLSSVPGGTR 141 (146)
Q Consensus 117 ~~~~~~tiSG~T~~~~~~~~~~~~~ 141 (146)
+....=||+|. .+|+++++.+.|
T Consensus 176 gvGTGGTitGv--ar~Lk~~~p~i~ 198 (300)
T COG0031 176 GVGTGGTITGV--ARYLKERNPNVR 198 (300)
T ss_pred eCCcchhHHHH--HHHHHhhCCCcE
Confidence 43444466664 678888877665
No 193
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.76 E-value=1.1e+02 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=9.4
Q ss_pred HHHHHHHHHhC-CCeEEE
Q psy3581 12 HNKLLAEMLDS-GIDVMV 28 (146)
Q Consensus 12 ~~~L~~~l~~~-ni~v~~ 28 (146)
+..+...|.+. ++.+..
T Consensus 13 a~~~~~~l~~~~~~~~~~ 30 (87)
T cd04795 13 AAYFALELLELTGIEVVA 30 (87)
T ss_pred HHHHHHHHhcccCCceEE
Confidence 34455556555 666643
No 194
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=24.68 E-value=3.9e+02 Score=21.89 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=37.9
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecc-hhH---HHHHHhhhcCCeEEEEE-EccHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFS-DEI---STALAKLKETDVRIILG-NFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~-~d~---~~~l~~LK~~d~RIIi~-~~~~~~a~~vfC~AYklgm 72 (146)
|....+.+.+.+++.|.++....+.. .+. ...++.+-+.++.=|++ ...++.....+ ++.+.|.
T Consensus 61 ~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l-~~~~~gi 129 (343)
T PRK10936 61 WLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL-ELQAANI 129 (343)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH-HHHHCCC
Confidence 34455678889999999987654432 223 34567777777664444 33444333444 6666553
No 195
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=24.60 E-value=74 Score=24.99 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHHhCCCeEEE--eeecch--h-HHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCC
Q psy3581 15 LLAEMLDSGIDVMV--SHSFSD--E-ISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMI 73 (146)
Q Consensus 15 L~~~l~~~ni~v~~--~~sf~~--d-~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~ 73 (146)
..+..++.||.+.. ...+.+ + ....++.|++.+.-+|++..|...-..-+++.++.|+.
T Consensus 43 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~i 106 (200)
T PRK05647 43 GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRII 106 (200)
T ss_pred HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEE
Confidence 55677788888765 334432 1 12346778888999999988888777788888887654
No 196
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.54 E-value=1.6e+02 Score=21.46 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcCCeEEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKETDVRIIL 52 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~d~RIIi 52 (146)
..-|.+.|++.|+++....-..+|+.. +|+.+.+ ++.|||
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~DliI 71 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD-EADVVL 71 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh-CCCEEE
Confidence 345777888999999887777777653 3444422 344444
No 197
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=24.54 E-value=1.3e+02 Score=21.74 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhh----hcCCeEEEEEEc---cHHHHHHHHHHHH
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKL----KETDVRIILGNF---NEFWAKMIFCEAY 68 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~L----K~~d~RIIi~~~---~~~~a~~vfC~AY 68 (146)
....-|.+.|++.|+++....-..||+..-.+.| ++.|.=|+.+.. .-+..+.++.++.
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~D~t~~a~~~~~ 82 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPDDVTPEALAEAG 82 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTTCHHHHHHHHHS
T ss_pred hHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccCCcccHHHHHhc
Confidence 3445678899999999998888888776543333 334555555433 2244555555443
No 198
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=24.42 E-value=2.2e+02 Score=18.85 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
..+.+.|.+.|++++-..++... .+..|++++.++|.+..
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG~~---~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIGPR---ALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCCcC---HHHHHHHCCCEEEEcCC
Confidence 34556666677777776665533 34455667777776553
No 199
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=24.35 E-value=66 Score=20.71 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHcC
Q psy3581 57 EFWAKMIFCEAYRIG 71 (146)
Q Consensus 57 ~~~a~~vfC~AYklg 71 (146)
-...+-+|++|+|+|
T Consensus 45 iGl~YgLfleAFKLG 59 (60)
T PF04483_consen 45 IGLLYGLFLEAFKLG 59 (60)
T ss_pred HHHHHHHHHHHHhcC
Confidence 356788999999997
No 200
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=24.17 E-value=92 Score=20.69 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc--hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS--DEISTALAKLKETDVRIILGNFNEFWAKMIFC 65 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~--~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC 65 (146)
.++.|.+.|+..|+++-...... .+....+..-- .+++++++...++....-.|
T Consensus 12 ~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i-~~s~~~i~~~S~~~~~s~~~ 67 (102)
T PF13676_consen 12 FAERLAERLESAGIRVFLDRDIPPGEDWREEIERAI-ERSDCVIVLLSPNYLKSPWC 67 (102)
T ss_dssp CHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCC-TTEEEEEEEEEHHHHCTHHH
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHH-HhCCEEEEEECcccccChHH
Confidence 46788999999999987765443 23333343322 35777777777766555555
No 201
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.11 E-value=1.9e+02 Score=24.18 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCeEEEee------------------ecc------hhHHHHHHhhhcCCeEEEEEEccHH--HHHHHHH
Q psy3581 12 HNKLLAEMLDSGIDVMVSH------------------SFS------DEISTALAKLKETDVRIILGNFNEF--WAKMIFC 65 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~------------------sf~------~d~~~~l~~LK~~d~RIIi~~~~~~--~a~~vfC 65 (146)
+.++++.++++||-+..-. .|. .||..-++.|++++.|+++..-..- .....+=
T Consensus 25 v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~ 104 (317)
T cd06594 25 VLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADDGPLYYE 104 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCchhHH
Confidence 4678889999998775441 132 3788999999999999987443221 1122256
Q ss_pred HHHHcCC
Q psy3581 66 EAYRIGM 72 (146)
Q Consensus 66 ~AYklgm 72 (146)
+|.++|.
T Consensus 105 ~~~~~g~ 111 (317)
T cd06594 105 EAKDAGY 111 (317)
T ss_pred HHHHCCe
Confidence 7777765
No 202
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=23.93 E-value=1.9e+02 Score=24.83 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=46.8
Q ss_pred hCCCeEEEeeecch---hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 21 DSGIDVMVSHSFSD---EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 21 ~~ni~v~~~~sf~~---d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
.+||+|+..+.-.. .....|..+-.++-+|.||..-+....-|--.|-+-|++.-..=| ++|-+.
T Consensus 30 R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~~~g~~yV~~RW-lgG~LT 97 (326)
T PRK12311 30 RNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAKRSAQYFVNSRW-LGGTLT 97 (326)
T ss_pred cCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhCCeeeCCee-cCcccC
Confidence 35777776554332 344556777788999999999998888888888888887655568 445543
No 203
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=23.84 E-value=2.4e+02 Score=21.43 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=25.3
Q ss_pred EEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 53 GNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 53 ~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
++--++.+..+.=+|.+.| ++-+|.-.|-.++
T Consensus 79 vFR~~e~~~~i~~eal~~~---~kv~W~QlGi~n~ 110 (140)
T COG1832 79 VFRRSEAAPEVAREALEKG---AKVVWLQLGIRNE 110 (140)
T ss_pred EecChhhhHHHHHHHHhhC---CCeEEEecCcCCH
Confidence 3335667788888999998 9999999987666
No 204
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=23.83 E-value=2.6e+02 Score=22.73 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEF 58 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~ 58 (146)
++....+..++.|+.+...--=..||....+.||+.+..++++|-.-+
T Consensus 94 TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D 141 (217)
T COG0269 94 TIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRD 141 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEeccc
Confidence 456667778888887755433335788888888888888888877654
No 205
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=23.42 E-value=2.4e+02 Score=21.71 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
++.++..+.++..+.-.|=..|....++.+++++.|++++.+-+
T Consensus 101 D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 101 DAMELADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEP 144 (181)
T ss_pred HHHHhhcccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCC
Confidence 33444444555555544444566666888888888888877766
No 206
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=23.29 E-value=1.8e+02 Score=24.24 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCeEEEee----------ecc------hhHHHHHHhhhcCCeEEEEEEccH---HHHHHHHHHHHHcCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSH----------SFS------DEISTALAKLKETDVRIILGNFNE---FWAKMIFCEAYRIGM 72 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~----------sf~------~d~~~~l~~LK~~d~RIIi~~~~~---~~a~~vfC~AYklgm 72 (146)
+.++++.++++||-+..-. .|. .||..-++.|++++.|+++..-.. +.....+=++.+.|.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~ 105 (317)
T cd06600 26 VVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGK 105 (317)
T ss_pred HHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCE
Confidence 4678888999998774431 121 378889999999999987643211 111345666776665
Q ss_pred C
Q psy3581 73 I 73 (146)
Q Consensus 73 ~ 73 (146)
+
T Consensus 106 ~ 106 (317)
T cd06600 106 F 106 (317)
T ss_pred E
Confidence 3
No 207
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=23.27 E-value=2.1e+02 Score=26.14 Aligned_cols=73 Identities=11% Similarity=-0.050 Sum_probs=41.6
Q ss_pred hHHHhHHHHHHHHHhCCCeEEEeeecch---------------hH--HHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHH
Q psy3581 7 LMYRAHNKLLAEMLDSGIDVMVSHSFSD---------------EI--STALAKLKETDVRIILGNFNEFWAKMIFCEAYR 69 (146)
Q Consensus 7 ~fs~~~~~L~~~l~~~ni~v~~~~sf~~---------------d~--~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYk 69 (146)
.|...-+.+.+.|++.|++++.-+.=.+ |+ .+.|+...-.++|.+++....+.+-...|+.-|
T Consensus 407 G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r 486 (601)
T PRK03659 407 GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQ 486 (601)
T ss_pred cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHH
Confidence 3455567778888888888866543211 11 123444555567777777666666666665554
Q ss_pred cCCCCCCeEEE
Q psy3581 70 IGMIGRKYQWL 80 (146)
Q Consensus 70 lgm~g~~YVWI 80 (146)
. ++...++.-
T Consensus 487 ~-~~p~~~Iia 496 (601)
T PRK03659 487 Q-HFPHLHILA 496 (601)
T ss_pred H-HCCCCeEEE
Confidence 4 334445543
No 208
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=96 Score=27.84 Aligned_cols=54 Identities=24% Similarity=0.151 Sum_probs=41.8
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeecc-------hhHHHHHHhhhcCCeE--------EEEEEccHHHHHHH
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSFS-------DEISTALAKLKETDVR--------IILGNFNEFWAKMI 63 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf~-------~d~~~~l~~LK~~d~R--------IIi~~~~~~~a~~v 63 (146)
.++.+.-.+.|++.||++... +-. .+|...|.-||+..+| ||.+..|++.|-+-
T Consensus 322 glT~eEaee~~~ey~IEleke-G~denavVV~QeP~~TldvLkE~KVr~~gv~~dkiieIELyed~APrS 390 (512)
T COG4070 322 GLTFEEAEEVLTEYGIELEKE-GTDENAVVVKQEPPYTLDVLKEAKVRAYGVPRDKIIEIELYEDRAPRS 390 (512)
T ss_pred eccHHHHHHHHHhhCeEEEee-cCCCccEEEecCCchHHhhhhhceeEEEecChhhEEEEEecCCCCchh
Confidence 355677788899999999664 422 4799999999999987 57788888877654
No 209
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.00 E-value=1.6e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCeEEEee-------------------ecc------hhHHHHHHhhhcCCeEEEEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSH-------------------SFS------DEISTALAKLKETDVRIILGN 54 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~-------------------sf~------~d~~~~l~~LK~~d~RIIi~~ 54 (146)
+.++++.++++||-+..-. .|+ .||..-++.|++++.|+++..
T Consensus 27 v~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 27 YLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred HHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 4678889999998764431 133 378899999999999988744
No 210
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=22.90 E-value=2e+02 Score=17.86 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=30.4
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHH
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFC 65 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC 65 (146)
..-++-+...|+++||............ ...---....+|.|-.-..+.|+.++-
T Consensus 9 ~~ea~~i~~~L~~~gI~~~v~~~~~~~~--~g~~g~~~~~~v~V~~~d~~~A~~il~ 63 (67)
T PF09413_consen 9 PIEAELIKGLLEENGIPAFVKNEHMSGY--AGEPGTGGQVEVYVPEEDYERAREILE 63 (67)
T ss_dssp HHHHHHHHHHHHHTT--EE--S----SS-----S--SSSEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEECCccchh--hcccCccCceEEEECHHHHHHHHHHHH
Confidence 3445678899999999987665444433 111111223888888888888888874
No 211
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=22.77 E-value=3.2e+02 Score=21.69 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCC-CCeEEEEeccCCCcccCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIG-RKYQWLIIGMYSESWWNG 92 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g-~~YVWIl~gwy~~~Ww~~ 92 (146)
.|.+.+++.|+. ...-|++.....+..+++.--||++.....+.+..++ -|++ .++||+- -+...|.
T Consensus 70 ~l~~li~~~~~~--~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E~~~~~~------~~~~~~~~VW~D--~f~~~~~-- 137 (192)
T cd08584 70 RLKKLLAEYGIT--NYFFLDMSVPDIIKYLENGEKRTATRVSEYEPIPTAL------SLYEKADWVWID--SFTSLWL-- 137 (192)
T ss_pred HHHHHHHhcCCc--ceEEEEcCCHHHHHHHhcCCCeeEEeecccccchHHH------HhhccccEEEEe--cccccCC--
Confidence 455555555553 2222333333344444333235554444433333221 2344 7789984 4445553
Q ss_pred CCCCCHHHHHHhhc
Q psy3581 93 SLPCPIEELVTALD 106 (146)
Q Consensus 93 ~~~Ct~~qi~~a~~ 106 (146)
+.+.+.+-++
T Consensus 138 ----~~~~~~~~~~ 147 (192)
T cd08584 138 ----DNDLILKLLK 147 (192)
T ss_pred ----CHHHHHHHHH
Confidence 4455555444
No 212
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.71 E-value=2.7e+02 Score=19.25 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=13.8
Q ss_pred HHHHHhhhcCCeEEEEEEccHHHHH
Q psy3581 37 STALAKLKETDVRIILGNFNEFWAK 61 (146)
Q Consensus 37 ~~~l~~LK~~d~RIIi~~~~~~~a~ 61 (146)
...|+.+++....+|++.-....+|
T Consensus 55 ~~ll~~~~~~~~d~ivv~~~~Rl~R 79 (137)
T cd00338 55 QRLLADVKAGKIDVVLVEKLDRLSR 79 (137)
T ss_pred HHHHHHHHcCCCCEEEEEecchhhC
Confidence 3446666665666666655444433
No 213
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=22.67 E-value=39 Score=19.34 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=7.6
Q ss_pred cceeccchhhhhh
Q psy3581 122 ITVSGIVSTVLLS 134 (146)
Q Consensus 122 ~tiSG~T~~~~~~ 134 (146)
+...|+||.+|++
T Consensus 30 k~~~g~tp~~y~~ 42 (42)
T PF00165_consen 30 KKETGMTPKQYRR 42 (42)
T ss_dssp HHHTSS-HHHHHH
T ss_pred HHHHCcCHHHHhC
Confidence 3456777777763
No 214
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=22.49 E-value=2.9e+02 Score=19.63 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc--hhHHHHHHhhhcCCeEEEEEEc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS--DEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~--~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
..+++++...+.|++.++.-.-. .......+..|+.+.+|++|.=
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E 63 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVE 63 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEe
Confidence 56889999999999976654442 2344556666668888877654
No 215
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=22.45 E-value=4.2e+02 Score=21.36 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=9.9
Q ss_pred CCeEEEEEEccHHHHHHHHHH
Q psy3581 46 TDVRIILGNFNEFWAKMIFCE 66 (146)
Q Consensus 46 ~d~RIIi~~~~~~~a~~vfC~ 66 (146)
.+..+|...|-+ .-.|++|.
T Consensus 175 ~~~p~i~isMG~-~iSRi~~~ 194 (229)
T PRK01261 175 KYKPIVFIPMGR-EFLRIFSG 194 (229)
T ss_pred CCCCEEEEECCc-HHHHHHHH
Confidence 344455555555 45555554
No 216
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=22.39 E-value=4.2e+02 Score=22.39 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCeEEEeeecchhH---HHHHHhhh----cCCeEEEEEEccHHHHHHHH
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEI---STALAKLK----ETDVRIILGNFNEFWAKMIF 64 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~---~~~l~~LK----~~d~RIIi~~~~~~~a~~vf 64 (146)
+.+.+.|++.|++++....|.|+- ...++.|. +.+ .+.+-+..|.|+-
T Consensus 240 ~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~----~iltTeKDaVKl~ 294 (326)
T PF02606_consen 240 ERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG----IILTTEKDAVKLP 294 (326)
T ss_pred HHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc----eEEecHHHHhhCh
Confidence 457788899999999888998631 22333333 333 4455666666655
No 217
>PRK03673 hypothetical protein; Provisional
Probab=22.33 E-value=1.9e+02 Score=25.39 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhc----CCeEEEEEEc---cHHHHHHHHHHHHHc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKE----TDVRIILGNF---NEFWAKMIFCEAYRI 70 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~----~d~RIIi~~~---~~~~a~~vfC~AYkl 70 (146)
...-|...|.+.|+++.......||+..-.+.|++ .|.=|+-|.. .-+..+...|+|...
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD~t~~avA~a~g~ 88 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDDLSALAAATAAGE 88 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCcccHHHHHHHHcCC
Confidence 34557788999999998888888887665444443 3433333333 335677777766533
No 218
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=22.26 E-value=2.4e+02 Score=24.22 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCcccCC------C---CCCCHHHHHHhhcce
Q psy3581 56 NEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWWNG------S---LPCPIEELVTALDGC 108 (146)
Q Consensus 56 ~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww~~------~---~~Ct~~qi~~a~~g~ 108 (146)
..+.+.++.-+|.++||- ++.+.+-+++|.. + .+++.+||.+++..+
T Consensus 56 ~~~~~~~~akrak~~Gm~------vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~y 111 (332)
T PF07745_consen 56 DLEDVIALAKRAKAAGMK------VLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDY 111 (332)
T ss_dssp SHHHHHHHHHHHHHTT-E------EEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCe------EEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHH
Confidence 345566777788899885 3445544446642 1 578999998776654
No 219
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=21.89 E-value=4.1e+02 Score=21.10 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=57.5
Q ss_pred hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHc--CCCCCC-eEEEEeccCCCcccCCCCCC----CHHHHHHhhc
Q psy3581 34 DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRI--GMIGRK-YQWLIIGMYSESWWNGSLPC----PIEELVTALD 106 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYkl--gm~g~~-YVWIl~gwy~~~Ww~~~~~C----t~~qi~~a~~ 106 (146)
++....++.|+....|+-++-... |..++.++-+. ..-|.. -|.-+. ++.|=.+++| |.+.+.++++
T Consensus 84 ~e~~~~l~~l~~~~~~v~ivTG~l--a~~~l~~~~~~l~~~~~~~v~V~~V~----N~fFG~~ItVaGLLTg~Dii~~L~ 157 (204)
T PF04459_consen 84 DEWEEALRKLPKKPRRVTIVTGVL--AYPFLKPLVEKLNRIPGLEVEVVPVK----NRFFGGTITVAGLLTGQDIIEQLK 157 (204)
T ss_pred HHHHHHHhhcCCCCeeEEEEeeHH--HHHHHHHHHHHHhccCCCeEEEEEee----cCCCCCCeEEeeCccHHHHHHHhC
Confidence 456667778776667766654433 44444333322 222322 334333 3333224444 7889988888
Q ss_pred c-----eeEeeecccCCCCCcceeccchhhhhh
Q psy3581 107 G-----CILTDLLPLSTSGEITVSGIVSTVLLS 134 (146)
Q Consensus 107 g-----~i~~~~~~~~~~~~~tiSG~T~~~~~~ 134 (146)
+ .+.+-...+..+...+.-++|..+..+
T Consensus 158 ~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~~ 190 (204)
T PF04459_consen 158 GKELGDLLLLPDVMLRHGEGVFLDDMTLEELEE 190 (204)
T ss_pred cCCCCCEEEECHHHhcCCCCccCCCCcHHHHHH
Confidence 7 456666777777889999999998876
No 220
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.85 E-value=1.6e+02 Score=22.99 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHHHHHhCCCeEEE--eeecch---hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 15 LLAEMLDSGIDVMV--SHSFSD---EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 15 L~~~l~~~ni~v~~--~~sf~~---d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
..+..+++||.+.. ...+.+ ...+.++.|++.++-++++..|...-..-++.+++.|.
T Consensus 42 ~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~ 104 (190)
T TIGR00639 42 GLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRI 104 (190)
T ss_pred HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCE
Confidence 45667788888764 333432 12344677888889999999888777777888777653
No 221
>PRK08005 epimerase; Validated
Probab=21.81 E-value=3e+02 Score=21.91 Aligned_cols=40 Identities=15% Similarity=0.019 Sum_probs=29.9
Q ss_pred chhHHHHHHhhhcCCeEEEEEEccH-HHHHHHHHHHHHcCC
Q psy3581 33 SDEISTALAKLKETDVRIILGNFNE-FWAKMIFCEAYRIGM 72 (146)
Q Consensus 33 ~~d~~~~l~~LK~~d~RIIi~~~~~-~~a~~vfC~AYklgm 72 (146)
..+|...++.+.+.++.+|.+|... ....+.+-...++|+
T Consensus 67 v~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~ 107 (210)
T PRK08005 67 VSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGA 107 (210)
T ss_pred cCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCC
Confidence 4678899999999999999988884 334456655666676
No 222
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.73 E-value=2e+02 Score=21.07 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc
Q psy3581 15 LLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 15 L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
+.+.|.++|++++....+.. .++..||+.+.+|+.+.-
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~---~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGP---NAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHcCCCEEEECccCH---HHHHHHHHcCcEEEecCC
Confidence 34555666666666554443 334455566666665543
No 223
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.72 E-value=1.7e+02 Score=27.42 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhCCCeEEEee------------ecc------hhHHHHHHhhhcCCeEEEEEE-ccHHHHHHHHHHHHHcC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSH------------SFS------DEISTALAKLKETDVRIILGN-FNEFWAKMIFCEAYRIG 71 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~------------sf~------~d~~~~l~~LK~~d~RIIi~~-~~~~~a~~vfC~AYklg 71 (146)
.+.++++.++++||-+..-. .|. .||..-++.|++++.|+++-. -+......+|-+|.+.|
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~g 363 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKG 363 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCC
Confidence 35678899999999875411 222 378899999999999988642 22233457788888887
Q ss_pred C
Q psy3581 72 M 72 (146)
Q Consensus 72 m 72 (146)
.
T Consensus 364 y 364 (665)
T PRK10658 364 Y 364 (665)
T ss_pred e
Confidence 6
No 224
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=21.70 E-value=1.9e+02 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=27.2
Q ss_pred HHHhCCCeEEEeeecc-------hhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 18 EMLDSGIDVMVSHSFS-------DEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 18 ~l~~~ni~v~~~~sf~-------~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
.++..|++++...+.. .+.....+.+|+.++++|+..-..
T Consensus 163 ~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~ 209 (256)
T PF01297_consen 163 FAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQF 209 (256)
T ss_dssp HHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS
T ss_pred HHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 4556788888877554 245556788899999999987654
No 225
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=21.57 E-value=2.9e+02 Score=19.15 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.0
Q ss_pred HHHHHHhhhcCCeEEEEEEccH
Q psy3581 36 ISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 36 ~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
+...++.+|+++.+|+.+...+
T Consensus 121 ~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 121 PKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred hHHHHHHHHHCCCEEEEEeccc
Confidence 6777888888888888776654
No 226
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.52 E-value=3.9e+02 Score=20.83 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeec--------------c-------hhHHHHHHhhhcCCeEEEEEE
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSF--------------S-------DEISTALAKLKETDVRIILGN 54 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf--------------~-------~d~~~~l~~LK~~d~RIIi~~ 54 (146)
...++.+.+.++++|+++...... + +...+.++..++.+++.|.+.
T Consensus 38 ~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~ 104 (254)
T TIGR03234 38 DWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCL 104 (254)
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 456788999999999999764211 1 112234666777788776653
No 227
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=21.42 E-value=1.2e+02 Score=20.74 Aligned_cols=69 Identities=17% Similarity=0.018 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc--cHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF--NEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~--~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
..++.+...|+..|..+..... .......+..+.+.| =+|++.. +.....++...|.+.| -.+..+++.
T Consensus 26 ~~a~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~i~iS~~g~~~~~~~~~~~a~~~g----~~iv~iT~~ 96 (139)
T cd05013 26 LVAEYLAYKLLRLGKPVVLLSD-PHLQLMSAANLTPGD-VVIAISFSGETKETVEAAEIAKERG----AKVIAITDS 96 (139)
T ss_pred HHHHHHHHHHHHcCCceEEecC-HHHHHHHHHcCCCCC-EEEEEeCCCCCHHHHHHHHHHHHcC----CeEEEEcCC
Confidence 3556777888888876544311 122233334454444 4444443 3344666777777776 356777664
No 228
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=21.39 E-value=2.4e+02 Score=20.15 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHH
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEIST 38 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~ 38 (146)
.-|.+.|++.|.++....-..+|+..
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~ 47 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADS 47 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHH
Confidence 34666788888888665555666553
No 229
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=21.37 E-value=3.9e+02 Score=20.61 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecc-hhH---HHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFS-DEI---STALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~-~d~---~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
|......+.+.+++.|++++...+-. +++ ...++.+.+.++--|++......+...+-+|.+.|+
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~gi 82 (268)
T cd06306 14 WLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASI 82 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCC
Confidence 44555678888999999987754322 222 245666666666655554332222224566666554
No 230
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=2.3e+02 Score=24.10 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=44.9
Q ss_pred hHHHhHHHHHHHHHhCC--CeEEEeeecch-hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCe
Q psy3581 7 LMYRAHNKLLAEMLDSG--IDVMVSHSFSD-EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKY 77 (146)
Q Consensus 7 ~fs~~~~~L~~~l~~~n--i~v~~~~sf~~-d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~Y 77 (146)
.||.++..+.....+.+ ++|...||.+. +-..-.+.|++.+.+..++ ++.|-..||.-...=+.|.+.
T Consensus 127 ~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I---~Dsa~~~~~~~vd~VivGad~ 197 (301)
T COG1184 127 SFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVI---VDSAVGAFMSRVDKVLVGADA 197 (301)
T ss_pred cCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEE---echHHHHHHHhCCEEEECccc
Confidence 46777777777776654 58888888885 3444568888888666554 455666776665554555443
No 231
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=21.28 E-value=2.4e+02 Score=21.28 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhh-cCCeEEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLK-ETDVRIIL 52 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK-~~d~RIIi 52 (146)
..-|...|++.|+++....-..||+. ++|+.+- ..++.+|+
T Consensus 24 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVI 68 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVIL 68 (163)
T ss_pred HHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 34466778889999887777777765 4454442 23566666
No 232
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=21.26 E-value=4.1e+02 Score=26.11 Aligned_cols=55 Identities=9% Similarity=0.255 Sum_probs=43.3
Q ss_pred hCCCeEEEeeecch----hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCe
Q psy3581 21 DSGIDVMVSHSFSD----EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKY 77 (146)
Q Consensus 21 ~~ni~v~~~~sf~~----d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~Y 77 (146)
+.+.+.+.-.++.| +..+.|+.|++.+.||.++-.... ....+-|+..|+.+++-
T Consensus 617 E~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~--~TA~~IA~~~~ii~~~~ 675 (1057)
T TIGR01652 617 EKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKV--ETAINIGYSCRLLSRNM 675 (1057)
T ss_pred HhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcH--HHHHHHHHHhCCCCCCC
Confidence 46889888888875 456789999999999999887654 44555588899988663
No 233
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=21.12 E-value=1.7e+02 Score=19.26 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=18.4
Q ss_pred hCCCeEEEeeecchhHHHHHHhhhcCCeEEE
Q psy3581 21 DSGIDVMVSHSFSDEISTALAKLKETDVRII 51 (146)
Q Consensus 21 ~~ni~v~~~~sf~~d~~~~l~~LK~~d~RII 51 (146)
..+..++....| +.+...|..||..+.++|
T Consensus 24 ~~~~~v~~iD~~-~~~~~~I~~L~~~G~~vi 53 (74)
T PF03537_consen 24 DPDVDVVVIDLF-DFSKEEIARLKAQGKKVI 53 (74)
T ss_dssp TSS-SEEEE-SB-S--HHHHHHHHHTT-EEE
T ss_pred CCCCCEEEECCc-cCCHHHHHHHHHCCCEEE
Confidence 467777776666 367888999999994444
No 234
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=21.11 E-value=3.3e+02 Score=19.74 Aligned_cols=51 Identities=24% Similarity=0.205 Sum_probs=33.6
Q ss_pred hHHHHHHHHHh--CCCeEEEeeecch--hHHHHHHhhhcCCeEEEEEEccHHHHH
Q psy3581 11 AHNKLLAEMLD--SGIDVMVSHSFSD--EISTALAKLKETDVRIILGNFNEFWAK 61 (146)
Q Consensus 11 ~~~~L~~~l~~--~ni~v~~~~sf~~--d~~~~l~~LK~~d~RIIi~~~~~~~a~ 61 (146)
..+.+.+.+++ .|+++.....-.+ +....++.+.+.++..+++......+.
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~ 72 (269)
T cd01391 18 LLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSAL 72 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHH
Confidence 34556677777 7888866544332 455667788888888787776655444
No 235
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=20.88 E-value=3.7e+02 Score=20.38 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEE
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGN 54 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~ 54 (146)
|....+.+.+.+++.|.++.-...- ++...++.|...++.-|++.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~l~~~~vdgii~~ 58 (261)
T cd06272 14 LTELVTGINQAISKNGYNMNVSITP--SLAEAEDLFKENRFDGVIIF 58 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecc--cHHHHHHHHHHcCcCEEEEe
Confidence 4455677888888999887665332 55667788888777755544
No 236
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.73 E-value=3.5e+02 Score=21.96 Aligned_cols=19 Identities=32% Similarity=0.114 Sum_probs=8.6
Q ss_pred HHHHHhhhcCCeEEEEEEc
Q psy3581 37 STALAKLKETDVRIILGNF 55 (146)
Q Consensus 37 ~~~l~~LK~~d~RIIi~~~ 55 (146)
...++.+++.++.-++++-
T Consensus 105 e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 3345555555544444333
No 237
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=20.58 E-value=1.5e+02 Score=23.59 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=41.6
Q ss_pred HHHHHhCCCeEEEeeecc---h--hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCC
Q psy3581 16 LAEMLDSGIDVMVSHSFS---D--EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMI 73 (146)
Q Consensus 16 ~~~l~~~ni~v~~~~sf~---~--d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~ 73 (146)
.+..+++||.+.....-. . +....++.|++.++-+|++..|...-..-|+++++.|+.
T Consensus 42 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~i 104 (207)
T PLN02331 42 AEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSIL 104 (207)
T ss_pred HHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhCCCCEE
Confidence 456778888875433221 1 123457788888999999999988888889999987653
No 238
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=20.44 E-value=2.5e+02 Score=23.11 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=42.9
Q ss_pred CCCeEEEeeecch---hHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 22 SGIDVMVSHSFSD---EISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 22 ~ni~v~~~~sf~~---d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
+|++|+..+.-.. .....|..+-.++-+|.++..-+....-|.-.|-+-|.+.-..=| ++|-+.+
T Consensus 36 ~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~~A~~~~~~yv~~rW-lgG~LTN 103 (258)
T PRK05299 36 NGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAEEAERCGMPYVNHRW-LGGMLTN 103 (258)
T ss_pred CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHHHHHHhCCeeeCCee-cCeeccC
Confidence 5666655443332 334456666678999999999988777777788777766544447 5565544
No 239
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.34 E-value=2e+02 Score=21.14 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhc-CCeEEEE
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKE-TDVRIIL 52 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~-~d~RIIi 52 (146)
...-|.+.|++.|+++....-..||+.. .|+++.+ ..+.+|+
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVi 66 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLIL 66 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 3345777899999999887777887764 4444333 1455555
No 240
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=20.30 E-value=92 Score=23.83 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHHHHH---------HhhhcCCeEEEEEEccH-----HHHHHHHHHHHHcCCCCC
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEISTAL---------AKLKETDVRIILGNFNE-----FWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l---------~~LK~~d~RIIi~~~~~-----~~a~~vfC~AYklgm~g~ 75 (146)
.+..++.+.|+++|.+++..+.++.+....+ +.++.. .+.+ -....-+|+|++.|+.+-
T Consensus 123 ~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
T smart00828 123 VTREEWAELLARNNLRVVEGVDASLEIANFLYDPGFEDNLERLYQD-------DLDEVTKRHFRGIANLGKLLEKGLASY 195 (224)
T ss_pred CCHHHHHHHHHHCCCeEEEeEECcHhHhhhccChhHHHHHHHhccc-------cchHHHHHHHhhHHHHHHHHHhchHhh
Confidence 4567788899999999999988876654322 222211 1111 124456788888887662
Q ss_pred CeEEEEeccCCCcccCCCCCCCHHHHHHh
Q psy3581 76 KYQWLIIGMYSESWWNGSLPCPIEELVTA 104 (146)
Q Consensus 76 ~YVWIl~gwy~~~Ww~~~~~Ct~~qi~~a 104 (146)
.- ..+.- ..++|.+|+..-
T Consensus 196 ~~-~~~~k---------~~~~~~~~~~~~ 214 (224)
T smart00828 196 AL-LIVQK---------DEFLSIEELRRL 214 (224)
T ss_pred EE-EEEec---------cccCCHHHHHHH
Confidence 21 11111 246688887543
No 241
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=20.18 E-value=2.7e+02 Score=21.68 Aligned_cols=8 Identities=0% Similarity=-0.201 Sum_probs=3.9
Q ss_pred eEEEEecc
Q psy3581 77 YQWLIIGM 84 (146)
Q Consensus 77 YVWIl~gw 84 (146)
-|.++.+-
T Consensus 173 ~v~vv~Da 180 (212)
T PTZ00331 173 KVVVLEDA 180 (212)
T ss_pred EEEEeCcC
Confidence 35555443
No 242
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=20.15 E-value=3.1e+02 Score=20.36 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHhCCCeEEEeeec-----------chhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 17 AEMLDSGIDVMVSHSF-----------SDEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 17 ~~l~~~ni~v~~~~sf-----------~~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
+.|++.|+..+...-- -.+..+.|+.||+.+.+++++.-.+
T Consensus 18 ~~~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 18 DLLKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred HHHHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCc
Confidence 3456677776644311 1234567899999999988887765
Done!