Query psy3581
Match_columns 146
No_of_seqs 103 out of 230
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:18:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f11_A Gamma-aminobutyric acid 99.6 1.6E-15 5.6E-20 125.9 12.9 124 11-134 170-299 (433)
2 4gpa_A Glutamate receptor 4; P 99.1 3.9E-10 1.3E-14 90.8 10.7 96 11-113 145-243 (389)
3 3o21_A Glutamate receptor 3; p 98.9 7.7E-09 2.6E-13 85.5 11.4 95 11-113 145-244 (389)
4 1dp4_A Atrial natriuretic pept 98.9 1.8E-08 6E-13 83.1 13.4 102 10-113 166-282 (435)
5 1jdp_A NPR-C, atrial natriuret 98.9 2.9E-08 9.9E-13 82.4 12.5 98 11-110 173-278 (441)
6 3saj_A Glutamate receptor 1; r 98.8 4.5E-08 1.6E-12 80.1 10.5 96 11-113 143-241 (384)
7 3hsy_A Glutamate receptor 2; l 98.7 2.1E-08 7.1E-13 82.1 7.3 74 11-84 136-216 (376)
8 3qel_B Glutamate [NMDA] recept 98.6 2.7E-08 9.3E-13 82.2 5.7 73 12-84 149-231 (364)
9 3kg2_A Glutamate receptor 2; I 98.6 1.1E-07 3.6E-12 84.7 8.4 74 11-84 136-216 (823)
10 3h6g_A Glutamate receptor, ion 98.6 1.3E-07 4.5E-12 77.2 7.6 72 12-84 154-228 (395)
11 3qek_A NMDA glutamate receptor 98.5 1.9E-07 6.5E-12 76.1 7.3 73 12-84 156-252 (384)
12 3om0_A Glutamate receptor, ion 98.5 2.7E-07 9.3E-12 75.4 7.9 77 10-87 153-231 (393)
13 2e4u_A Metabotropic glutamate 98.0 2.3E-05 7.9E-10 67.6 9.7 95 11-114 202-302 (555)
14 3ks9_A Mglur1, metabotropic gl 97.9 3.3E-05 1.1E-09 66.1 9.1 96 11-114 213-316 (496)
15 3sm9_A Mglur3, metabotropic gl 97.9 5.7E-05 1.9E-09 64.4 9.7 94 11-114 201-301 (479)
16 4eyg_A Twin-arginine transloca 97.6 9.1E-05 3.1E-09 59.0 6.2 96 12-115 156-255 (368)
17 4evq_A Putative ABC transporte 97.4 0.0015 5E-08 52.1 10.5 92 12-114 168-262 (375)
18 3mq4_A Mglur7, metabotropic gl 97.4 3.5E-05 1.2E-09 65.4 0.8 95 13-114 204-307 (481)
19 3h5l_A Putative branched-chain 97.3 0.00049 1.7E-08 56.3 7.4 91 12-113 181-276 (419)
20 1usg_A Leucine-specific bindin 97.3 0.0014 4.8E-08 51.5 9.7 92 12-114 155-250 (346)
21 3i09_A Periplasmic branched-ch 97.3 0.0012 4E-08 53.0 9.0 94 12-115 157-254 (375)
22 3n0w_A ABC branched chain amin 97.3 0.00065 2.2E-08 54.7 7.4 95 12-115 159-257 (379)
23 4f06_A Extracellular ligand-bi 97.2 0.0021 7.2E-08 51.9 9.7 98 12-116 156-257 (371)
24 3td9_A Branched chain amino ac 97.0 0.0028 9.5E-08 50.5 8.7 91 12-114 167-261 (366)
25 3lkb_A Probable branched-chain 97.0 0.0034 1.2E-07 50.6 8.7 94 12-115 160-256 (392)
26 3eaf_A ABC transporter, substr 97.0 0.0036 1.2E-07 50.6 8.9 94 12-115 159-258 (391)
27 3lop_A Substrate binding perip 96.9 0.0018 6.1E-08 51.7 6.8 95 12-116 158-256 (364)
28 3hut_A Putative branched-chain 96.9 0.0047 1.6E-07 48.9 9.2 92 12-114 156-251 (358)
29 3ipc_A ABC transporter, substr 96.6 0.0041 1.4E-07 49.2 6.7 91 12-113 155-249 (356)
30 4gnr_A ABC transporter substra 96.6 0.0039 1.3E-07 49.5 6.5 62 14-75 159-224 (353)
31 1pea_A Amidase operon; gene re 96.6 0.0046 1.6E-07 49.9 6.5 95 12-114 157-256 (385)
32 3i45_A Twin-arginine transloca 96.2 0.018 6E-07 46.3 8.2 68 12-81 159-231 (387)
33 3snr_A Extracellular ligand-bi 95.7 0.029 9.9E-07 43.9 6.9 92 12-113 152-246 (362)
34 3sg0_A Extracellular ligand-bi 95.5 0.015 5.1E-07 46.1 4.7 91 12-113 176-270 (386)
35 3n0x_A Possible substrate bind 90.9 0.26 8.8E-06 39.4 4.6 70 12-83 158-235 (374)
36 3ckm_A YRAM (HI1655), LPOA; pe 89.4 0.48 1.6E-05 37.3 5.0 64 12-75 141-205 (327)
37 2h4a_A YRAM (HI1655); perplasm 76.1 4.7 0.00016 32.3 5.7 92 13-113 140-233 (325)
38 1j3m_A The conserved hypotheti 62.9 30 0.001 23.8 6.9 69 7-77 11-79 (129)
39 3p6l_A Sugar phosphate isomera 62.0 33 0.0011 25.5 7.5 62 11-72 64-129 (262)
40 3gt7_A Sensor protein; structu 58.3 31 0.001 23.2 6.2 120 11-134 19-150 (154)
41 1q9u_A Uncharacterized protein 55.3 47 0.0016 22.7 6.8 68 7-78 14-83 (130)
42 2f06_A Conserved hypothetical 52.8 28 0.00095 24.0 5.3 13 14-26 88-100 (144)
43 3lmz_A Putative sugar isomeras 51.1 57 0.0019 24.2 7.2 61 12-72 63-127 (257)
44 2pju_A Propionate catabolism o 48.0 15 0.00051 28.4 3.4 34 34-73 141-174 (225)
45 2q5c_A NTRC family transcripti 44.3 13 0.00046 27.7 2.6 34 34-73 129-162 (196)
46 2p4g_A Hypothetical protein; p 40.6 99 0.0034 23.9 7.2 70 14-87 154-223 (270)
47 3iwt_A 178AA long hypothetical 40.3 51 0.0018 23.7 5.2 42 13-54 43-88 (178)
48 3em5_A Beta-1,3-glucanase; gly 39.7 64 0.0022 26.2 6.1 87 12-107 16-115 (316)
49 3bdk_A D-mannonate dehydratase 38.7 50 0.0017 27.4 5.5 47 11-57 65-127 (386)
50 1req_B Methylmalonyl-COA mutas 34.3 1.4E+02 0.0047 26.7 7.8 63 8-72 523-589 (637)
51 1ccw_A Protein (glutamate muta 33.4 53 0.0018 22.8 4.2 48 9-57 17-64 (137)
52 3f4l_A Putative oxidoreductase 32.7 1.6E+02 0.0053 23.1 7.3 80 11-90 77-161 (345)
53 1geq_A Tryptophan synthase alp 32.5 1.5E+02 0.0052 21.9 7.2 48 8-55 93-141 (248)
54 3jr2_A Hexulose-6-phosphate sy 31.9 1.1E+02 0.0037 22.6 6.0 45 13-57 47-93 (218)
55 2pln_A HP1043, response regula 31.2 87 0.003 20.1 4.8 37 12-52 31-67 (137)
56 3f4w_A Putative hexulose 6 pho 28.9 1.6E+02 0.0055 21.1 6.7 44 14-57 42-87 (211)
57 1y5e_A Molybdenum cofactor bio 26.8 65 0.0022 23.1 3.8 44 11-54 32-79 (169)
58 2fcj_A Small toprim domain pro 26.5 78 0.0027 22.1 4.0 79 23-109 26-105 (119)
59 3rfq_A Pterin-4-alpha-carbinol 26.3 95 0.0032 23.0 4.7 42 13-54 52-96 (185)
60 2p9j_A Hypothetical protein AQ 25.8 1E+02 0.0034 20.8 4.5 30 35-64 40-69 (162)
61 3ixr_A Bacterioferritin comigr 25.5 1.2E+02 0.0042 21.1 5.1 32 38-69 76-107 (179)
62 3vup_A Beta-1,4-mannanase; TIM 25.2 1.2E+02 0.0042 22.2 5.2 43 12-54 44-110 (351)
63 2azn_A HTP reductase, putative 25.0 2E+02 0.007 21.0 7.2 67 17-87 109-178 (219)
64 2re2_A Uncharacterized protein 24.8 1.6E+02 0.0056 20.3 5.5 44 14-61 70-114 (136)
65 1mkz_A Molybdenum cofactor bio 24.4 1.3E+02 0.0044 21.6 5.1 45 10-54 28-76 (172)
66 3h75_A Periplasmic sugar-bindi 24.3 2.1E+02 0.007 21.8 6.6 64 8-72 19-87 (350)
67 3g13_A Putative conjugative tr 24.2 1.4E+02 0.0048 20.9 5.2 18 38-55 66-83 (169)
68 2is8_A Molybdopterin biosynthe 23.7 72 0.0024 22.8 3.5 56 12-67 23-87 (164)
69 2hk0_A D-psicose 3-epimerase; 23.5 2.4E+02 0.0082 21.2 7.6 46 10-55 66-128 (309)
70 3kbq_A Protein TA0487; structu 23.4 1.3E+02 0.0044 22.1 4.9 63 11-74 24-94 (172)
71 3eod_A Protein HNR; response r 22.9 1.5E+02 0.0051 18.6 5.5 43 11-57 19-61 (130)
72 4f82_A Thioredoxin reductase; 22.5 98 0.0033 22.7 4.1 16 13-28 72-88 (176)
73 2yxb_A Coenzyme B12-dependent 22.1 1.4E+02 0.0048 21.2 4.8 62 10-72 33-98 (161)
74 3ffs_A Inosine-5-monophosphate 21.9 1.7E+02 0.0057 24.4 5.9 61 13-80 146-211 (400)
75 3r2g_A Inosine 5'-monophosphat 21.7 2.4E+02 0.0081 23.2 6.7 62 12-80 101-168 (361)
76 1tz9_A Mannonate dehydratase; 21.5 1.3E+02 0.0043 23.9 4.9 47 11-57 56-118 (367)
77 3l6u_A ABC-type sugar transpor 21.3 2.4E+02 0.0083 20.5 6.9 64 8-71 23-89 (293)
78 3gkn_A Bacterioferritin comigr 21.2 1.4E+02 0.0048 20.0 4.5 30 39-68 61-90 (163)
79 3guv_A Site-specific recombina 21.1 1.4E+02 0.0047 20.9 4.6 18 38-55 64-83 (167)
80 1tjy_A Sugar transport protein 20.9 1.7E+02 0.0059 22.0 5.4 65 8-72 18-86 (316)
81 3l49_A ABC sugar (ribose) tran 20.8 2.5E+02 0.0084 20.4 7.8 64 8-72 20-87 (291)
82 3grc_A Sensor protein, kinase; 20.7 1.7E+02 0.0059 18.6 4.9 42 11-56 18-59 (140)
83 3m9w_A D-xylose-binding peripl 20.7 2.6E+02 0.009 20.7 6.7 47 8-55 17-66 (313)
84 3hu5_A Isochorismatase family 20.6 1.7E+02 0.0056 21.4 5.1 7 78-84 154-160 (204)
85 1i4n_A Indole-3-glycerol phosp 20.5 1.2E+02 0.0042 23.6 4.5 89 8-116 86-182 (251)
86 3d02_A Putative LACI-type tran 20.4 1.9E+02 0.0064 21.3 5.4 64 8-71 19-86 (303)
87 3l7p_A Putative nitrogen regul 20.4 1.7E+02 0.0059 19.8 4.8 71 10-82 13-98 (115)
88 1nf9_A Phenazine biosynthesis 20.3 1.7E+02 0.0058 21.3 5.1 10 49-58 144-153 (207)
89 3g1w_A Sugar ABC transporter; 20.3 1.1E+02 0.0037 22.7 4.0 65 8-72 19-87 (305)
90 1kjn_A MTH0777; hypotethical p 20.3 2.6E+02 0.0091 20.5 6.6 74 8-83 21-112 (157)
91 3i42_A Response regulator rece 20.3 1.7E+02 0.0057 18.3 4.9 55 11-69 15-71 (127)
92 1im5_A 180AA long hypothetical 20.1 1.8E+02 0.0061 20.6 5.1 21 15-35 111-131 (180)
93 2qip_A Protein of unknown func 20.1 92 0.0031 22.1 3.4 88 11-114 62-162 (165)
94 3rot_A ABC sugar transporter, 20.0 1.9E+02 0.0064 21.4 5.4 65 8-72 18-87 (297)
No 1
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.64 E-value=1.6e-15 Score=125.88 Aligned_cols=124 Identities=39% Similarity=0.670 Sum_probs=111.8
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCccc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWW 90 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww 90 (146)
.++.+.+.+++.|++|+..+.+..|+..+|.+||++++|+|++..+...+..++|+|+++||.+++|+||.++++.+.||
T Consensus 170 ~~~~~~~~~~~~g~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 249 (433)
T 4f11_A 170 VRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWW 249 (433)
T ss_dssp HHHHHHHHSSSSSCEEEEEEEESSCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESCSCTTTT
T ss_pred HHHHHHHHHHHcCceEEEEeccCcCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCcchHhHh
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------CCCCCCHHHHHHhhcceeEeeecccCCCCCcceeccchhhhhh
Q psy3581 91 N------GSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVSTVLLS 134 (146)
Q Consensus 91 ~------~~~~Ct~~qi~~a~~g~i~~~~~~~~~~~~~tiSG~T~~~~~~ 134 (146)
. ...+|+.+++.++++|++++.+++...+..+++++.++++|.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~ 299 (433)
T 4f11_A 250 EQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYER 299 (433)
T ss_dssp TCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHH
T ss_pred cccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHH
Confidence 5 3478999999999999999998776656667888899888876
No 2
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.12 E-value=3.9e-10 Score=90.82 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
..+++.+.+++.|+.|...+.+. .|....|+++|++++|+|++..++..+..+||+|+++||++++|+||++++...
T Consensus 145 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 224 (389)
T 4gpa_A 145 ILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFK 224 (389)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGG
T ss_pred HHHHHHHHHHhcCceEEEEeecCCcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCcccc
Confidence 35678889999999999988776 467888999999999999999999999999999999999999999999998777
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
.++ .+++.....|..++..
T Consensus 225 ~~~-------~~~~~~~~~~i~~~~~ 243 (389)
T 4gpa_A 225 DIS-------LERFIHGGANVTGFQL 243 (389)
T ss_dssp GSC-------CHHHHHHBCEEEEEEC
T ss_pred chh-------hhhhhhcccceEEEEe
Confidence 654 2455555666555543
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.93 E-value=7.7e-09 Score=85.46 Aligned_cols=95 Identities=8% Similarity=0.144 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec-cC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG-MY 85 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g-wy 85 (146)
.++.+.+.+++.|++|+..+.+. .|...+|++||++++++|++..+.+.+..++++|.++||.+++|+||+.+ |.
T Consensus 145 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~ 224 (389)
T 3o21_A 145 VLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGF 224 (389)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTG
T ss_pred HHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCc
Confidence 45678899999999999988774 27889999999999999999999999999999999999999999999987 33
Q ss_pred CCcccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 86 SESWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 86 ~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
.+. + .+++.....|.+++..
T Consensus 225 ~~~------~--~~~~~~~~~~~~~~~~ 244 (389)
T 3o21_A 225 TDI------L--LERVMHGGANITGFQI 244 (389)
T ss_dssp GGC------C--CHHHHHTTCEEEEEES
T ss_pred ccc------c--HHHHhcCCcceEEEEE
Confidence 221 1 2355566677766654
No 4
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.93 E-value=1.8e-08 Score=83.12 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=84.0
Q ss_pred HhHHHHHHHHHh-CCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccC
Q psy3581 10 RAHNKLLAEMLD-SGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMY 85 (146)
Q Consensus 10 ~~~~~L~~~l~~-~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy 85 (146)
..++.+.+.+.+ .|++|+..+.+. .|....|++||+ ++|||++..++..+..++++|.++||.+++|+||.++++
T Consensus 166 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 244 (435)
T 1dp4_A 166 FIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVF 244 (435)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTT
T ss_pred HHHHHHHHHHHhhcCeEEEEEEEecCchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCEEEEEEecc
Confidence 456778888988 999998877652 477889999999 999999999999999999999999999999999999876
Q ss_pred CCc-----------ccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 86 SES-----------WWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 86 ~~~-----------Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
... ||.. .....+.+.++++|++.+.+
T Consensus 245 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 282 (435)
T 1dp4_A 245 GQSLKSAQGLVPQKPWER-GDGQDRSARQAFQAAKIITY 282 (435)
T ss_dssp CTTSCSSCTTSCBCTTCC-SSSCHHHHHHHGGGEEEEEE
T ss_pred cccccccccccccCCccc-CCcchHHHHHHhheeEEEec
Confidence 552 4432 13346778889999988765
No 5
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.86 E-value=2.9e-08 Score=82.43 Aligned_cols=98 Identities=12% Similarity=0.152 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
.++.|.+.|+++|++|+..+.+. .|....+++|| +++|||++..+.+.+..++|+|+++||.++.|+||.++++.+
T Consensus 173 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~ 251 (441)
T 1jdp_A 173 TLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNS 251 (441)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEecccc
Confidence 56788899999999998876553 37888999999 999999999999999999999999999999999999998765
Q ss_pred -----cccCCCCCCCHHHHHHhhcceeE
Q psy3581 88 -----SWWNGSLPCPIEELVTALDGCIL 110 (146)
Q Consensus 88 -----~Ww~~~~~Ct~~qi~~a~~g~i~ 110 (146)
.+|... +...+....+.++..+
T Consensus 252 ~~~~~~~w~~~-~~~~~~~~~~~~~~~g 278 (441)
T 1jdp_A 252 SSYGDGSWKRG-DKHDFEAKQAYSSLQT 278 (441)
T ss_dssp CSTTTCTTCCS-STTHHHHHHHGGGEEE
T ss_pred ccccCCCCccC-CcccHHHHHHHHhheE
Confidence 266432 2223333344454433
No 6
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=98.76 E-value=4.5e-08 Score=80.13 Aligned_cols=96 Identities=8% Similarity=0.181 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
.++.+.+.+++.|++|+..+.+. .|....|.+||++++++|++..+...+..++++|.++||.+++|+||+.++
T Consensus 143 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~--- 219 (384)
T 3saj_A 143 VLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANL--- 219 (384)
T ss_dssp HHHHHHHHHHHHTCEEEEEEGGGCCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSS---
T ss_pred HHHHHHHHhhhcCceEEEEEeccCCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECC---
Confidence 35678889999999999887553 467788999999999999999999999999999999999999999999875
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
|+.. . ..+++...+.|.+++..
T Consensus 220 -~~~~-~--~~~~~~~~~~~v~~~~~ 241 (384)
T 3saj_A 220 -GFMD-I--DLNKFKESGANVTGFQL 241 (384)
T ss_dssp -CGGG-S--CHHHHHHTTCCEEEEEC
T ss_pred -Cccc-c--cHHHhhCCCcceEEEEe
Confidence 1111 1 23455566667776654
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=98.73 E-value=2.1e-08 Score=82.08 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-------hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-------DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-------~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
..+.+.+.+++.|++|+..+.+. .|...+|.+||+++.++|++..+...+..++++|.++||.+++|+||+.+
T Consensus 136 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~ 215 (376)
T 3hsy_A 136 TLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN 215 (376)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECS
T ss_pred HHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcC
Confidence 35678889999999998877552 46778999999999999999999999999999999999999999999998
Q ss_pred c
Q psy3581 84 M 84 (146)
Q Consensus 84 w 84 (146)
|
T Consensus 216 ~ 216 (376)
T 3hsy_A 216 L 216 (376)
T ss_dssp S
T ss_pred C
Confidence 6
No 8
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=98.64 E-value=2.7e-08 Score=82.21 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=57.7
Q ss_pred HHHHHHHHHhC--C----CeEEEeeecc---hhHHHHH-HhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEE
Q psy3581 12 HNKLLAEMLDS--G----IDVMVSHSFS---DEISTAL-AKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81 (146)
Q Consensus 12 ~~~L~~~l~~~--n----i~v~~~~sf~---~d~~~~l-~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl 81 (146)
...|.+.|++. | +.+.....+. .|....| +.||++++|+|++..+.+.+..+|++|.++||+|++|+||+
T Consensus 149 ~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~ 228 (364)
T 3qel_B 149 YQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 228 (364)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEE
T ss_pred HHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 34555666654 3 3444444443 3566678 79999999999999999999999999999999999999999
Q ss_pred ecc
Q psy3581 82 IGM 84 (146)
Q Consensus 82 ~gw 84 (146)
+++
T Consensus 229 t~~ 231 (364)
T 3qel_B 229 PSL 231 (364)
T ss_dssp CHH
T ss_pred ecc
Confidence 876
No 9
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=98.59 E-value=1.1e-07 Score=84.75 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-------hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-------DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-------~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.++.+.+.++++|++|+..+.+. .|...+|+++|++++|+|++..+.+.+..++++|.++||++++|+||+++
T Consensus 136 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 215 (823)
T 3kg2_A 136 TLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN 215 (823)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECS
T ss_pred HHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEec
Confidence 45778899999999999887653 35678899999999999999999999999999999999999999999998
Q ss_pred c
Q psy3581 84 M 84 (146)
Q Consensus 84 w 84 (146)
+
T Consensus 216 ~ 216 (823)
T 3kg2_A 216 L 216 (823)
T ss_dssp S
T ss_pred c
Confidence 5
No 10
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=98.57 E-value=1.3e-07 Score=77.18 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
++.+.+.+++.|++|+..+ +. .|....|++||++++++|++..+...+..++++|.++||.++.|+||+.++
T Consensus 154 ~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~ 228 (395)
T 3h6g_A 154 LQELIKAPSRYNLRLKIRQ-LPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTL 228 (395)
T ss_dssp THHHHTGGGTSSCEEEEEE-CCSSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCT
T ss_pred HHHHHHhhhcCCceEEEEE-eCCCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecC
Confidence 3567778889999998865 75 578899999999999999999999999999999999999999999999875
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.52 E-value=1.9e-07 Score=76.11 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCeEE---------------------Eeeec---chhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHH
Q psy3581 12 HNKLLAEMLDSGIDVM---------------------VSHSF---SDEISTALAKLKETDVRIILGNFNEFWAKMIFCEA 67 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~---------------------~~~sf---~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~A 67 (146)
.+.|.+.+++.|++++ ....+ ..|....|+++|++++|+|++..+++.+..++++|
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 235 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH
Confidence 4668888999998652 11112 25788999999999999999999999999999999
Q ss_pred HHcCCCCCCeEEEEecc
Q psy3581 68 YRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 68 Yklgm~g~~YVWIl~gw 84 (146)
.++||+|++|+||.+++
T Consensus 236 ~~~g~~~~~~~~i~~~~ 252 (384)
T 3qek_A 236 AMLDMTGAGYVWLVGER 252 (384)
T ss_dssp HHTTCSSTTCEEECCSG
T ss_pred HHcCCccCCeEEEEecc
Confidence 99999999999999875
No 12
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.50 E-value=2.7e-07 Score=75.43 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=65.3
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecc--hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFS--DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~--~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
....++.+.+.+.|++|... .+. .|....|++||++++++|++..+.+.+..++++|.++||.++.|+||+.+|...
T Consensus 153 ~~l~~~~~~~~~~g~~v~~~-~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 231 (393)
T 3om0_A 153 LRLEELVRGFLISKETLSVR-MLDDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFP 231 (393)
T ss_dssp HHTHHHHHHHHHSSSCEEEE-ECC-CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGG
T ss_pred HHHHHHHHhhhccCCeEEEE-ecCCCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEeccccc
Confidence 34456666777899998654 353 478899999999999999999999999999999999999999999999988543
No 13
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=98.03 E-value=2.3e-05 Score=67.57 Aligned_cols=95 Identities=12% Similarity=0.189 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhc-CCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKE-TDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~-~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.++.|.++++++|+.|+..+.+. .|....++++|+ .++|+|++..+...++.++.+|.++|| +++||..+
T Consensus 202 ~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~- 277 (555)
T 2e4u_A 202 GIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SFTWVASD- 277 (555)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CCEEEECT-
T ss_pred HHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---CeEEEEec-
Confidence 45778899999999999888875 256668999965 799999999999999999999999998 79999854
Q ss_pred CCCcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 85 YSESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 85 y~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
.|-...... +....+++|++++...
T Consensus 278 ---~~~~~~~~~--~~~~~~~~G~l~~~~~ 302 (555)
T 2e4u_A 278 ---GWGAQESIV--KGSEHVAYGAITLELA 302 (555)
T ss_dssp ---TTTTCGGGT--TTCHHHHTTCEEEEEC
T ss_pred ---cccccchhh--ccchhhcceEEEEEec
Confidence 232111101 1124678999887653
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=97.94 E-value=3.3e-05 Score=66.06 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcC--CeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKET--DVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~--d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.++.|.++++++|+.|+..+.+. .|....+++||++ +++||++......+..++.+|.++||.++ ++||..+
T Consensus 213 ~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~k-~~~i~s~ 291 (496)
T 3ks9_A 213 GMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSD 291 (496)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCSC-CEEEECT
T ss_pred HHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCCc-EEEEEec
Confidence 35678899999999999988774 4677889999985 99999999999999999999999999865 7888764
Q ss_pred -cCCCcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 84 -MYSESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 84 -wy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
|-... . .......+++|++++..+
T Consensus 292 ~w~~~~------~-~~~~~~~~~~G~l~~~~~ 316 (496)
T 3ks9_A 292 GWADRD------E-VIEGYEVEANGGITIKLQ 316 (496)
T ss_dssp TTTTCH------H-HHTTCHHHHTTCEEEEEC
T ss_pred hhcccc------c-cccccccccCceEEEecc
Confidence 32110 0 011233578999887653
No 15
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=97.90 E-value=5.7e-05 Score=64.37 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc-----hhHHHHH-HhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS-----DEISTAL-AKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l-~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
.++.|.++++++|+.|+..+.+. .|....+ +.+|++++++|++..+.+.+..++++|.++||. ++||.++.
T Consensus 201 ~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~ 277 (479)
T 3sm9_A 201 GIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FTWVASDG 277 (479)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTT
T ss_pred HHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---EEEEEech
Confidence 35778899999999999998885 3556677 778999999999999999999999999999997 89999753
Q ss_pred CCCcccCC-CCCCCHHHHHHhhcceeEeeec
Q psy3581 85 YSESWWNG-SLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 85 y~~~Ww~~-~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
|-.. .. ......+++|++++..+
T Consensus 278 ----w~~~~~~---~~~~~~~~~G~l~~~~~ 301 (479)
T 3sm9_A 278 ----WGAQESI---IKGSEHVAYGAITLELA 301 (479)
T ss_dssp ----TTTCHHH---HTTCTTTTTTCEEEEEC
T ss_pred ----hhcCccc---cccccccCceEEEEEec
Confidence 2110 00 00112467888887653
No 16
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=97.61 E-value=9.1e-05 Score=59.04 Aligned_cols=96 Identities=8% Similarity=0.052 Sum_probs=75.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~~ 87 (146)
.+.+.+.|++.|++++..+.+. .|....+++|++.+..+|++......+..+++++.++|+.++++.|+..+| +.+
T Consensus 156 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 235 (368)
T 4eyg_A 156 LAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDD 235 (368)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCH
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCH
Confidence 4668889999999999888775 478889999999999999998888899999999999999998899998875 333
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
.++. .+-.+++|.+...+..
T Consensus 236 ~~~~--------~~g~~~~g~~~~~~~~ 255 (368)
T 4eyg_A 236 DLLN--------SMGDAALGVVTAHMYS 255 (368)
T ss_dssp HHHT--------TCCGGGTTCEEEESCC
T ss_pred HHHH--------hhhhhhCCeEEeeecC
Confidence 3321 1124678887765443
No 17
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=97.38 E-value=0.0015 Score=52.07 Aligned_cols=92 Identities=12% Similarity=-0.022 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|+++|++++..+.+. .|....++.+++.+..+|++..+...|..++.++.++|+..| |+..+|+.+.
T Consensus 168 ~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~~~~~~ 244 (375)
T 4evq_A 168 VSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPGFLTDG 244 (375)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEGGGTTT
T ss_pred HHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecCcCCHH
Confidence 4667889999999998877775 467888999999999999998889999999999999999733 5555664443
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
..+.+-.+++|.+.+.+.
T Consensus 245 --------~~~~~g~~~~g~~~~~~~ 262 (375)
T 4evq_A 245 --------VEAAAGPAGDGIKTVLHY 262 (375)
T ss_dssp --------THHHHGGGGTTCEEEESC
T ss_pred --------HHHhhhhhcCCeEEeecc
Confidence 345566789998877544
No 18
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=97.37 E-value=3.5e-05 Score=65.40 Aligned_cols=95 Identities=16% Similarity=0.295 Sum_probs=49.7
Q ss_pred HHHHHHHHh-CCCeEEEeeecch-------hHHHHHHhhh-cCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 13 NKLLAEMLD-SGIDVMVSHSFSD-------EISTALAKLK-ETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 13 ~~L~~~l~~-~ni~v~~~~sf~~-------d~~~~l~~LK-~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
+.+.+.+++ .|+.|...+.+.. |....+.+++ .+++++|++..+.+.+..++++|.++||.| +++||.++
T Consensus 204 ~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~ 282 (481)
T 3mq4_A 204 ESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSD 282 (481)
T ss_dssp HHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC-----------CCCEEEC-
T ss_pred HHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEEC
Confidence 445566664 7999988777752 4556789998 579999999999999999999999999987 48999864
Q ss_pred cCCCcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 84 MYSESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 84 wy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
. | ..... ........++|.+++.+.
T Consensus 283 ~----w-~~~~~-~~~~~~~~~~G~l~~~~~ 307 (481)
T 3mq4_A 283 S----W-GSKIN-PLHQHEDIAEGAITIQPK 307 (481)
T ss_dssp ----------------------CCCEEEEEC
T ss_pred c----c-ccccc-cccccchhhccEEEEecC
Confidence 2 2 11111 112335678999887754
No 19
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=97.35 E-value=0.00049 Score=56.27 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEcc-HHHHHHHHHHHHHcCCCCCCeEEEEe-ccCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFN-EFWAKMIFCEAYRIGMIGRKYQWLII-GMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~-~~~a~~vfC~AYklgm~g~~YVWIl~-gwy~ 86 (146)
.+.+.+.+++.|++|+..+.+. .|....|.+||+.+.++|++..+ ++.+..+++++.++|+ +..|+.. +|..
T Consensus 181 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~ 257 (419)
T 3h5l_A 181 ANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPT---NSLVYLQYGASL 257 (419)
T ss_dssp HHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC---SCEEEECSGGGS
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCC---CceEEecCCCCc
Confidence 3567788999999999998886 58899999999999999998854 6789999999999998 3445543 4433
Q ss_pred CcccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 87 ESWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 87 ~~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
+. ..+..-.+++|.+....
T Consensus 258 ~~--------~~~~~g~~~~G~~~~~~ 276 (419)
T 3h5l_A 258 AA--------FRDIAGDNSVGVTYATV 276 (419)
T ss_dssp HH--------HHHHHGGGGTTCEEEES
T ss_pred HH--------HHHhhhhhcCceEEeec
Confidence 32 22344467889876644
No 20
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=97.34 E-value=0.0014 Score=51.48 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec-cCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG-MYSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g-wy~~ 87 (146)
.+.+.+.|++.|++++..+.+. .|....+++|++.+.++|++..+...|..+++++.++|+..| |+..+ |..+
T Consensus 155 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~ 231 (346)
T 1usg_A 155 ARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA 231 (346)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH
Confidence 4557788999999998877764 367788999999999999999888889999999999999876 66543 2222
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
.+ .+..-.+++|.+.+.+.
T Consensus 232 ~~--------~~~~~~~~~g~~~~~~~ 250 (346)
T 1usg_A 232 SL--------SNIAGDAAEGMLVTMPK 250 (346)
T ss_dssp TH--------HHHHGGGGTTCEEEECC
T ss_pred HH--------HHHhhHhhCCeEEecCC
Confidence 21 23334578998877644
No 21
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=97.30 E-value=0.0012 Score=52.99 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|++.|++|+..+.+. .|....+.++++.+..+|++..+...+..++.++.++|+.++. .++-.+++.+
T Consensus 157 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~- 234 (375)
T 3i09_A 157 EKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFIN- 234 (375)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHH-
T ss_pred HHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchh-
Confidence 4667889999999999888776 4778899999999999999999999999999999999999998 3332222111
Q ss_pred ccCCCCCCCHHHHH-HhhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELV-TALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~-~a~~g~i~~~~~~ 115 (146)
.-.++- ++++|.+.+.+..
T Consensus 235 --------~~~~~~~~~~~g~~~~~~~~ 254 (375)
T 3i09_A 235 --------DVHALGLETTQGLVLTDSWY 254 (375)
T ss_dssp --------HHHHHCHHHHTTCEEEESCC
T ss_pred --------hHhhhChhhhCCeeeeeeec
Confidence 112232 5788987766543
No 22
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=97.29 E-value=0.00065 Score=54.72 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=72.1
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|++.|++|+..+.+. .|....+.++|+.+..+|++..+...+..++.++.++|+.++.+.+.-.+|+...
T Consensus 159 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (379)
T 3n0w_A 159 NAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQKVGGMIDILTD 238 (379)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSCEEECCBCCHHH
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCcEEEecccchHH
Confidence 4667888999999999888776 4778899999999999999999989999999999999999987543333332221
Q ss_pred ccCCCCCCCHHHHH-HhhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELV-TALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~-~a~~g~i~~~~~~ 115 (146)
-.++- .+++|.+.+.+..
T Consensus 239 ---------~~~~~~~~~~g~~~~~~~~ 257 (379)
T 3n0w_A 239 ---------VKSAGLRVMQGQEYATSFY 257 (379)
T ss_dssp ---------HHHHCHHHHTTCEEEESCC
T ss_pred ---------HHhhCHHhhCCeEEEeeec
Confidence 12232 5788987766543
No 23
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=97.21 E-value=0.0021 Score=51.93 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=75.0
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccH-HHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNE-FWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~-~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
.+.+.+.+++.|++|+..+.+. .|...+|.+||+.+..+|++.... +.+..++.++...|+....+.++..++...
T Consensus 156 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 235 (371)
T 4f06_A 156 ETAFKKTFEAEGGKVVEAVRMPLSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVT 235 (371)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGC
T ss_pred HHHHHHHHHhcCCceEEEEecCcccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCC
Confidence 3557889999999999999996 588999999999999999887765 556666777778899888888888775322
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeeeccc
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDLLPL 116 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~~~~ 116 (146)
...-..+..+.+|.+...+...
T Consensus 236 -------~~~~~~~~~~~~g~~~~~~~~~ 257 (371)
T 4f06_A 236 -------EPDLPNIGEAGLGILSTYHYAV 257 (371)
T ss_dssp -------GGGHHHHCGGGTTCEEEESCCT
T ss_pred -------HHHHHhcccccCceEEeecccc
Confidence 1234455678888877665443
No 24
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=97.04 E-value=0.0028 Score=50.50 Aligned_cols=91 Identities=19% Similarity=0.100 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~~ 87 (146)
.+.+.+.|++.|++++..+ +. .|....+++|++.+..+|++..+...+..+++++.++|+..+ |+..++ ..+
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~ 242 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGY---ILAGDGADAP 242 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-ECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCSE---EEECGGGCST
T ss_pred HHHHHHHHHHCCCEEEEEE-eCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCce---EEeeCCcCCH
Confidence 3668889999999999887 75 477888999999999999999999999999999999999653 554322 222
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
. ..+..-.+++|.+.+...
T Consensus 243 ~--------~~~~~~~~~~g~~~~~~~ 261 (366)
T 3td9_A 243 E--------LIEIGGEAVEGLLFTTHY 261 (366)
T ss_dssp H--------HHHHHGGGGTTCEEEESC
T ss_pred H--------HHHHHhHHhCCeEEEEee
Confidence 1 233444688898776653
No 25
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=96.97 E-value=0.0034 Score=50.56 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|++.|++++..+.+. .|....+++|++.+..+|++..+...+..++.++.++|+..| |+..+|..+
T Consensus 160 ~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~- 235 (392)
T 3lkb_A 160 VEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYTGG- 235 (392)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCS-
T ss_pred HHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCccc-
Confidence 4567889999999999888876 377889999999999999999999999999999999999653 444433111
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeeecc
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDLLP 115 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~~~ 115 (146)
.-..+..-.+++|.+.+....
T Consensus 236 ------~~~~~~~g~~~~g~~~~~~~~ 256 (392)
T 3lkb_A 236 ------PDLIALAGDAAEGFLWATSFY 256 (392)
T ss_dssp ------HHHHHHHGGGGTTCEEEESBC
T ss_pred ------HHHHHhhhhhhcCeEEEEeec
Confidence 001223335789988776543
No 26
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=96.97 E-value=0.0036 Score=50.58 Aligned_cols=94 Identities=7% Similarity=-0.058 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHh--hhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAK--LKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~--LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
.+.+.+.|++.|++|+..+.+. .|....+.+ |++.+..+|++..+...+..++.+|.++|+..| |+..+|..
T Consensus 159 ~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~ 235 (391)
T 3eaf_A 159 IGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLTNVWGF 235 (391)
T ss_dssp HHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEECGGGC
T ss_pred HHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEEeccCC
Confidence 4567888999999999888886 378889999 999999999999999999999999999999765 44443321
Q ss_pred CcccCCCCCCCHHHHHHhhcc-eeEeeecc
Q psy3581 87 ESWWNGSLPCPIEELVTALDG-CILTDLLP 115 (146)
Q Consensus 87 ~~Ww~~~~~Ct~~qi~~a~~g-~i~~~~~~ 115 (146)
+ .-..+..-.+++| .+...+.+
T Consensus 236 ~-------~~~~~~~g~~~~g~~~~~~~~~ 258 (391)
T 3eaf_A 236 D-------ERSPQLIGEGGYGKVFGISPFI 258 (391)
T ss_dssp S-------TTHHHHHCGGGTTSEEEEESBC
T ss_pred C-------HHHHHhhhhhccCcEEEEEEec
Confidence 1 1122344467899 77766554
No 27
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=96.94 E-value=0.0018 Score=51.70 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|++.|++++..+.+. .|....+++|++.+..+|++..+...+..++.++.++|+..| |+..++....
T Consensus 158 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~ 234 (364)
T 3lop_A 158 ITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPG 234 (364)
T ss_dssp HHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHH
T ss_pred HHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChH
Confidence 4567889999999998877775 477889999999999999999999999999999999999876 4443322110
Q ss_pred ccCCCCCCCHHHHH-HhhcceeEeeeccc
Q psy3581 89 WWNGSLPCPIEELV-TALDGCILTDLLPL 116 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~-~a~~g~i~~~~~~~ 116 (146)
-..+.+- .+++|.+.....|.
T Consensus 235 -------~~~~~~g~~~~~g~~~~~~~~~ 256 (364)
T 3lop_A 235 -------ILQKVAGLDAVRGYSLALVMPN 256 (364)
T ss_dssp -------HHHHHHCHHHHTTCEEEECSCC
T ss_pred -------HHHHHhChhhcCCeEEEEEeCC
Confidence 0122333 67899887765443
No 28
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=96.94 E-value=0.0047 Score=48.92 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~~ 87 (146)
.+.+.+.|++.|++++..+.+. .|....++.|++.+..+|++..+...|..+++++.++|+..| |+..+. ...
T Consensus 156 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~ 232 (358)
T 3hut_A 156 AQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP 232 (358)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH
Confidence 4567889999999998877775 467788999999999999999999999999999999999654 555432 222
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
. ..+..-.+++|.+.+.+.
T Consensus 233 ~--------~~~~~~~~~~g~~~~~~~ 251 (358)
T 3hut_A 233 K--------FIDLGGPAVEGVRLATAF 251 (358)
T ss_dssp H--------HHHHHGGGGTTCEEEESC
T ss_pred H--------HHHHhHHhhCCeEEEecc
Confidence 2 123334578898776644
No 29
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=96.65 E-value=0.0041 Score=49.20 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEecc-CCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGM-YSE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gw-y~~ 87 (146)
.+.+.+.|++.|++++..+.+. .|....++.|++.+..+|++..+...+..++.++.++|+..| |+..++ ...
T Consensus 155 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~ 231 (356)
T 3ipc_A 155 ADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSN 231 (356)
T ss_dssp HHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSH
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCH
Confidence 4567889999999998877775 467888999999999999999999999999999999999865 554432 222
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
. ..+..-.+++|.+.+.+
T Consensus 232 ~--------~~~~~g~~~~g~~~~~~ 249 (356)
T 3ipc_A 232 E--------LASIAGDAVEGTLNTFG 249 (356)
T ss_dssp H--------HHHHHGGGGTTCEEEES
T ss_pred H--------HHHHhhHHhCCEEEEec
Confidence 2 12233456888766543
No 30
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=96.63 E-value=0.0039 Score=49.49 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=54.3
Q ss_pred HHHHHHH-hCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 14 KLLAEML-DSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 14 ~L~~~l~-~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
.+.+.++ +.|.+|+..+.+. .|.+.+|.+||+.+.++|++..+...+..++++|.++|+.++
T Consensus 159 ~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~ 224 (353)
T 4gnr_A 159 GIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP 224 (353)
T ss_dssp HHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc
Confidence 4445554 5799999999986 488999999999999999999999999999999999999776
No 31
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=96.56 E-value=0.0046 Score=49.87 Aligned_cols=95 Identities=8% Similarity=0.063 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc-----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS-----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYS 86 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~-----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~ 86 (146)
.+.+.+.|++.|++++..+.+. .|....+++|++.+..+|++..+...|..++.++.++|+.++++.++-.+|..
T Consensus 157 ~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~ 236 (385)
T 1pea_A 157 NHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSE 236 (385)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCH
T ss_pred HHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccch
Confidence 3557788999999998765442 36677899999888999999887888999999999999998776555443322
Q ss_pred CcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 87 ESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 87 ~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
..++. -. .++++|.+.+.++
T Consensus 237 ~~~~~----~~----~~~~~g~~~~~~~ 256 (385)
T 1pea_A 237 AEVAK----ME----SDVAEGQVVVAPY 256 (385)
T ss_dssp HHHTT----SC----HHHHTTCEEEESC
T ss_pred HHHHh----cC----chhhCCeEEeccc
Confidence 22110 00 1468898876543
No 32
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=96.22 E-value=0.018 Score=46.33 Aligned_cols=68 Identities=6% Similarity=0.052 Sum_probs=57.8
Q ss_pred HHHHHHHHHhC--CCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEE
Q psy3581 12 HNKLLAEMLDS--GIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLI 81 (146)
Q Consensus 12 ~~~L~~~l~~~--ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl 81 (146)
.+.+.+.|++. |++++..+.+. .|....++++++.+.++|++..+...+..++.+|.++||.+. +|++
T Consensus 159 ~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~ 231 (387)
T 3i45_A 159 VARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVV 231 (387)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEE
T ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEE
Confidence 45677888888 99998887775 478899999999999999999999999999999999999665 4444
No 33
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=95.66 E-value=0.029 Score=43.91 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
.+.+.+.|+++|++++..+.+. .|....++.|++.+..+|++..+...|..++.++.++|+..|. +...++.+.
T Consensus 152 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p~---i~~~g~~~~ 228 (362)
T 3snr_A 152 FNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGLI---YQTHGAASM 228 (362)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSEE---EECGGGCSH
T ss_pred HHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCccE---EeccCcCcH
Confidence 4567889999999998877775 4677889999999999999999899999999999999998763 333322211
Q ss_pred ccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 89 WWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 89 Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
-..+..-.+++|.+....
T Consensus 229 -------~~~~~~~~~~~g~~~~~~ 246 (362)
T 3snr_A 229 -------DFIRIAGKSAEGVLMASG 246 (362)
T ss_dssp -------HHHHHHGGGGTTCEEEEC
T ss_pred -------HHHHHhHHHhCCCEEecc
Confidence 012334457889877654
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=95.49 E-value=0.015 Score=46.11 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccC-CC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMY-SE 87 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy-~~ 87 (146)
.+.+.+.|++.|++++..+.+. .|....++.+++.+..+|++..+...|..++.++.++|+..+ ++...+. ..
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~ 252 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGVATE 252 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGGCSH
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccccCCH
Confidence 4567788999999998777765 477888999999999999999988889999999999999865 3332221 11
Q ss_pred cccCCCCCCCHHHHHHhhcceeEeee
Q psy3581 88 SWWNGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 88 ~Ww~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
. ..+..-.+++|.+....
T Consensus 253 ~--------~~~~~~~~~~g~~~~~~ 270 (386)
T 3sg0_A 253 E--------FIKLGGKDVEGAIFAGE 270 (386)
T ss_dssp H--------HHHHHGGGGTTCEEEEC
T ss_pred H--------HHHhhhhhcCCeEEecc
Confidence 1 12233357888776553
No 35
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=90.92 E-value=0.26 Score=39.37 Aligned_cols=70 Identities=7% Similarity=-0.012 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCeEEEeeecc---hhHHHHHHhhhcCC-----eEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEec
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS---DEISTALAKLKETD-----VRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIG 83 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~---~d~~~~l~~LK~~d-----~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~g 83 (146)
.+.+.+.+++.|++|+..+.+. .|....|++||+.+ ..+|++....... .+-++..++|...++.+++.+
T Consensus 158 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~ 235 (374)
T 3n0x_A 158 VAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGG 235 (374)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECTTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECC
T ss_pred HHHHHHHHHHcCCEEeeeecCCCCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeecc
Confidence 4678889999999999998886 47889999999998 9988886433111 122344567777677766544
No 36
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=89.39 E-value=0.48 Score=37.32 Aligned_cols=64 Identities=5% Similarity=-0.194 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc-hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS-DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGR 75 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~-~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~ 75 (146)
.+.+.+.+++.|.+|+..+.+. .+....+..+|..+...|++..++..+..+.-++..+|+..+
T Consensus 141 ~~~f~~~~~~~Gg~vv~~~~~~~~~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~ 205 (327)
T 3ckm_A 141 GNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA 205 (327)
T ss_dssp HHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE
T ss_pred HHHHHHHHHHCCCeEEEEEECCCCchhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC
Confidence 3557889999999999999997 466677889999999999999999999999988877665443
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=76.15 E-value=4.7 Score=32.35 Aligned_cols=92 Identities=7% Similarity=0.007 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCCeEEEeeecc--hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCccc
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFS--DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWW 90 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~--~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww 90 (146)
+.+.+.+++.|.+|+..+.|. +|...+|+++ ..+.-.|++..+...+. ++....+.. |.+--- |...+|
T Consensus 140 ~~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i-~~~pDaV~~~~~~~~~~-~i~~~~~~~--g~~~pl-----~~~~~~ 210 (325)
T 2h4a_A 140 NAFNVRWQQLAGTDANIRYYNLPADVTYFVQEN-NSNTTALYAVASPTELA-EXKGYLTNI--VPNLAI-----YASSRA 210 (325)
T ss_dssp HHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHS-TTCCCEEEECCCHHHHH-HHHHHHTTT--CTTCEE-----EECGGG
T ss_pred HHHHHHHHHcCCCcceeEecCCHHHHHHHHHhc-CCCCCEEEEeCCHHHHh-hhhhhHhhc--CCCCCE-----EEeccc
Confidence 557788999999999999886 4777788888 46777888878887774 444444432 433222 223333
Q ss_pred CCCCCCCHHHHHHhhcceeEeee
Q psy3581 91 NGSLPCPIEELVTALDGCILTDL 113 (146)
Q Consensus 91 ~~~~~Ct~~qi~~a~~g~i~~~~ 113 (146)
.....=..++...+++|.+..+.
T Consensus 211 ~~~s~~~~~~~~~~~~Gv~f~~~ 233 (325)
T 2h4a_A 211 SASATNTNTDFIAQMNGVQFSDI 233 (325)
T ss_dssp CCHHHHTCHHHHHHTTTCEEEEC
T ss_pred cccCCCCCchhhhhcCCcEEEcc
Confidence 20000012345678999877664
No 38
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=62.86 E-value=30 Score=23.77 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=48.9
Q ss_pred hHHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCe
Q psy3581 7 LMYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKY 77 (146)
Q Consensus 7 ~fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~Y 77 (146)
-|..+...|.+.|+++|+.|.............+. +.-.+.+ |++...|..|.+++-..-..|++=|-=
T Consensus 11 s~~e~~~~l~~al~~~Gf~v~~~id~~~~l~~k~g-~~~~~~~-il~~cnP~~a~~~l~~~p~~g~~lPcr 79 (129)
T 1j3m_A 11 TLAEARAQVEAALKEEGFGILTEIDVAATLKAKLG-LEKPPYL-ILGACNPNLAARALEALPEIGLLLPCN 79 (129)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHC-CCCCCEE-EEEEECHHHHHHHHHHCGGGGGGCSEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEeCHHHHHHHhcC-CCCCCeE-EEEECCHHHHHHHHHhCHHHHhhcCcE
Confidence 57888899999999999999887555444333331 2222455 556778888999998777888877663
No 39
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=62.01 E-value=33 Score=25.51 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
....+.+.++++|+++....... ++....++..++.+++.++++..++.-.++--.|-+.|+
T Consensus 64 ~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 64 TQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 35788999999999998776653 467788999999999999998765444444444556665
No 40
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=58.32 E-value=31 Score=23.21 Aligned_cols=120 Identities=8% Similarity=-0.088 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH--HHHHHHHHHHHHcCCCCCCeEEEEeccCCCc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE--FWAKMIFCEAYRIGMIGRKYQWLIIGMYSES 88 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~--~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~ 88 (146)
....|.+.|++.|+.|.. ..++.++++.+++....+|++...- ..+..++-+..+.+-+..--+=++.+.-...
T Consensus 19 ~~~~l~~~L~~~g~~v~~----~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~ 94 (154)
T 3gt7_A 19 QAEHLKHILEETGYQTEH----VRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPR 94 (154)
T ss_dssp HHHHHHHHHHTTTCEEEE----ESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHH
T ss_pred HHHHHHHHHHHCCCEEEE----eCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChH
Confidence 345677788888987743 3577778888888888888877642 2344444433333322222233444432222
Q ss_pred ccCC----------CCCCCHHHHHHhhcceeEeeecccCCCCCcceeccchhhhhh
Q psy3581 89 WWNG----------SLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVSTVLLS 134 (146)
Q Consensus 89 Ww~~----------~~~Ct~~qi~~a~~g~i~~~~~~~~~~~~~tiSG~T~~~~~~ 134 (146)
.... .-++..+++.++++..+.-....-.......+++.++..+.+
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~~~~~~~~~lt~~~~~~~~~ 150 (154)
T 3gt7_A 95 DVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRTEERYSRESITLAFGNEGHH 150 (154)
T ss_dssp HHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCCCC------CCCCCC------
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCCCcc
Confidence 1100 135677788777776553222221222334555555554443
No 41
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=55.26 E-value=47 Score=22.67 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=48.7
Q ss_pred hHHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhh-cC-CeEEEEEEccHHHHHHHHHHHHHcCCCCCCeE
Q psy3581 7 LMYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLK-ET-DVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQ 78 (146)
Q Consensus 7 ~fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK-~~-d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YV 78 (146)
-|..+...|.+.|+++|+.|.....+ ...++.-. +. .--.|++.-.|..|.+++-..-..|++=|--|
T Consensus 14 s~~e~~~~l~~al~~~Gf~v~~~~d~----~~~~~~~G~~~~~~~~il~~cnp~~a~~~l~~~p~~g~~lPcrv 83 (130)
T 1q9u_A 14 GMNETIERLEESLKQEGFGVLWQFSV----TEKLQEKGLDFSTPMVILEVCNPQEAARVLNENLLVGYFLPCKL 83 (130)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEEH----HHHHHHTTCCCCSCEEEEEEECHHHHHHHHHHCGGGGGGCSEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECH----HHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHhCHHHHhhcCeEE
Confidence 57888899999999999999886444 33333331 21 22246677788999999988888888887633
No 42
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=52.78 E-value=28 Score=24.02 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=6.5
Q ss_pred HHHHHHHhCCCeE
Q psy3581 14 KLLAEMLDSGIDV 26 (146)
Q Consensus 14 ~L~~~l~~~ni~v 26 (146)
.+.+.|.++||+|
T Consensus 88 ~i~~~L~~~~InI 100 (144)
T 2f06_A 88 KVLGFLSAEGVFI 100 (144)
T ss_dssp HHHHHHHHTTCCE
T ss_pred HHHHHHHHCCCCE
Confidence 3444555555555
No 43
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=51.05 E-value=57 Score=24.19 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCeEEEeeecc----hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFS----DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~----~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
...+.+.++++|+++....... +.....++..++.+++.++++...+.-.++.-.|-+.|+
T Consensus 63 ~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 63 IRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEECGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCCHHHHHHHHHHHHHcCC
Confidence 4678889999999987655442 356677888888899888887554434444334555565
No 44
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=48.01 E-value=15 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=26.3
Q ss_pred hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCC
Q psy3581 34 DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMI 73 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~ 73 (146)
+|....++.||+.++++|+|...... .|-++||-
T Consensus 141 ee~~~~i~~l~~~G~~vVVG~~~~~~------~A~~~Gl~ 174 (225)
T 2pju_A 141 EDARGQINELKANGTEAVVGAGLITD------LAEEAGMT 174 (225)
T ss_dssp HHHHHHHHHHHHTTCCEEEESHHHHH------HHHHTTSE
T ss_pred HHHHHHHHHHHHCCCCEEECCHHHHH------HHHHcCCc
Confidence 47788899999999999999766532 36777764
No 45
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=44.32 E-value=13 Score=27.73 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=26.3
Q ss_pred hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCC
Q psy3581 34 DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMI 73 (146)
Q Consensus 34 ~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~ 73 (146)
+|....++.||+.++++|+|...... .|-++||-
T Consensus 129 ~e~~~~i~~l~~~G~~vvVG~~~~~~------~A~~~Gl~ 162 (196)
T 2q5c_A 129 DEITTLISKVKTENIKIVVSGKTVTD------EAIKQGLY 162 (196)
T ss_dssp GGHHHHHHHHHHTTCCEEEECHHHHH------HHHHTTCE
T ss_pred HHHHHHHHHHHHCCCeEEECCHHHHH------HHHHcCCc
Confidence 47788999999999999999766532 36677764
No 46
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=40.60 E-value=99 Score=23.86 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
+-...+++.|++++....=..|+...|+.|++.+.+=|++..-+..+..+ .+.||..+=++.+.|-....
T Consensus 154 ~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlvEGG~~l~~sf----L~agLVDEl~l~iaP~llG~ 223 (270)
T 2p4g_A 154 QRLQKLIDVGVEVIVAPTSTNPLKIAFDALHARRLKKISIEGGPSVYRQA----LSLGIVDRLHLTIAPNIICP 223 (270)
T ss_dssp HHHHHHHHHTCCEEEECSSSCHHHHHHHHHHTTTCCEEEEEECHHHHHHH----HHHTCCCEEEEEEESCCCSS
T ss_pred HHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHCCCCEEEEecCHHHHHHH----HHCCCCeEEEEEEcCEEEcC
Confidence 34456778899987643212378899999999998877777776555444 47799999888888876654
No 47
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.33 E-value=51 Score=23.67 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHHHHHhhh----cCCeEEEEEE
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEISTALAKLK----ETDVRIILGN 54 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK----~~d~RIIi~~ 54 (146)
.-|.+.|++.|++|....-..||+....+.++ ..++-+|+..
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 45888999999999998888888765433333 3456667644
No 48
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A*
Probab=39.69 E-value=64 Score=26.24 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHH-HHHH---HHcCC--C--CCCeEEEEec
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMI-FCEA---YRIGM--I--GRKYQWLIIG 83 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~v-fC~A---Yklgm--~--g~~YVWIl~g 83 (146)
-.+.+++|+.+||+.+. -+..|+ ..|+-++..+.+++++...++...-- --.| -+.+. | +.+...|..|
T Consensus 16 p~~vv~llks~gi~~VR--lYdaD~-~vL~Al~~sgi~v~vGV~n~~l~~la~~~~A~~WV~~nV~~y~p~~~I~~IaVG 92 (316)
T 3em5_A 16 VSEVIALYKKSNITRMR--IYDPNQ-AVLEALRGSNIELILGVPNSDLQSLTNPSNAKSWVQKNVRGFWSSVRFRYIAVG 92 (316)
T ss_dssp HHHHHHHHHHTTCCEEE--CSSCCH-HHHHHHTTCCCEEEEEECGGGHHHHTSHHHHHHHHHHHTGGGTTTSCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEE--EecCCH-HHHHHhhcCCceEEEecccchhhhccCHHHHHHHHHHhhhhcCCCceEEEEEEe
Confidence 46788999999998876 566676 58999999999999998865432110 0112 12111 2 3445566666
Q ss_pred c--CCCcccCCCCCCC---HHHHHHhhcc
Q psy3581 84 M--YSESWWNGSLPCP---IEELVTALDG 107 (146)
Q Consensus 84 w--y~~~Ww~~~~~Ct---~~qi~~a~~g 107 (146)
- +.. -+|+ .+++..||+.
T Consensus 93 NEvl~~------~~~t~~~~~~LvpAm~n 115 (316)
T 3em5_A 93 NEISPV------NRGTAWLAQFVLPAMRN 115 (316)
T ss_dssp ESCCTT------CTTTGGGHHHHHHHHHH
T ss_pred cccccC------CCccccCHHHHHHHHHH
Confidence 3 222 2577 7888877765
No 49
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=38.65 E-value=50 Score=27.41 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc----------------hhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS----------------DEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~----------------~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
-...|.+.++++|+++...+++. +.....|+.+++.++++|..++.|
T Consensus 65 ~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi~~v~~nf~p 127 (386)
T 3bdk_A 65 NILELKKMVEEAGLEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVCYNFMP 127 (386)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTCCEEEECCCS
T ss_pred HHHHHHHHHHHcCCEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 45678899999999998876543 134567899999999998876543
No 50
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=34.28 E-value=1.4e+02 Score=26.72 Aligned_cols=63 Identities=8% Similarity=-0.100 Sum_probs=47.6
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHH----HHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEF----WAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~----~a~~vfC~AYklgm 72 (146)
+..-.+-....|+..|++|+....+.+ .+.++..++.|+.||.+..... .+..+.=+--+.|+
T Consensus 523 Hd~ga~~va~~l~~aGfeVi~~g~~~t--ee~v~aa~e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~ 589 (637)
T 1req_B 523 FGGREGFSSPVWHIAGIDTPQVEGGTT--AEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGA 589 (637)
T ss_dssp HHHHHHHHHHHHHHTTCBCCEEECCCH--HHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHhCCeeEEeCCCCCC--HHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHHHhCCC
Confidence 445556667789999999999877777 7888999999999999887554 44455444456677
No 51
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=33.37 E-value=53 Score=22.76 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 9 YRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 9 s~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
....+-+...|+.+|++|+.... ...|.+.++..++.++.+|.+....
T Consensus 17 diG~~~v~~~l~~~G~~Vi~lG~-~~p~e~~v~~a~~~~~d~v~lS~~~ 64 (137)
T 1ccw_A 17 AVGNKILDHAFTNAGFNVVNIGV-LSPQELFIKAAIETKADAILVSSLY 64 (137)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEE-EECHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcCCCEEEEEecC
Confidence 34456677889999999987655 4456777888888899999988744
No 52
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=32.72 E-value=1.6e+02 Score=23.06 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhH---HHHHHhhhcCCeEEEEEEccH-HHHHHHHHHHHHcCCCCC-CeEEEEeccC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEI---STALAKLKETDVRIILGNFNE-FWAKMIFCEAYRIGMIGR-KYQWLIIGMY 85 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~---~~~l~~LK~~d~RIIi~~~~~-~~a~~vfC~AYklgm~g~-~YVWIl~gwy 85 (146)
.+-++...+-++|..|+..-.++.++ ..-++..++++..+.+++..- ..+.+-+-+..+.|-.|+ .++-.-.+++
T Consensus 77 ~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~~~~ 156 (345)
T 3f4l_A 77 SHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYY 156 (345)
T ss_dssp GHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHSTTCSEEEEEEECCCB
T ss_pred HHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHhcCCCCCeEEEEEEeecc
Confidence 45567777888999999887776544 444677778888887766643 345555666777888884 4454445666
Q ss_pred CCccc
Q psy3581 86 SESWW 90 (146)
Q Consensus 86 ~~~Ww 90 (146)
.+.||
T Consensus 157 ~~~~~ 161 (345)
T 3f4l_A 157 RPVAE 161 (345)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 66665
No 53
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=32.45 E-value=1.5e+02 Score=21.90 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecc-hhHHHHHHhhhcCCeEEEEEEc
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFS-DEISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~-~d~~~~l~~LK~~d~RIIi~~~ 55 (146)
|.....+..+.+.+.|...+.....+ .++...++.+|+.+.+++++..
T Consensus 93 ~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 141 (248)
T 1geq_A 93 YRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAA 141 (248)
T ss_dssp HHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEEC
T ss_pred hhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEEC
Confidence 44444556666666666655554333 3555556666666666665543
No 54
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=31.85 E-value=1.1e+02 Score=22.61 Aligned_cols=45 Identities=9% Similarity=-0.064 Sum_probs=33.5
Q ss_pred HHHHHHHHhC--CCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 13 NKLLAEMLDS--GIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 13 ~~L~~~l~~~--ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
.++++.+++. +..+...-.+-+.|...++.+.+.++.+|.++..+
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~ 93 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAA 93 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS
T ss_pred HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC
Confidence 3567777765 66676555566677778888888899999888765
No 55
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=31.21 E-value=87 Score=20.10 Aligned_cols=37 Identities=3% Similarity=0.079 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIIL 52 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi 52 (146)
...|.+.|+..|++|. ...+..+.++.+++....+++
T Consensus 31 ~~~l~~~L~~~g~~v~----~~~~~~~al~~l~~~~~dlvi 67 (137)
T 2pln_A 31 GGEIEKGLNVKGFMAD----VTESLEDGEYLMDIRNYDLVM 67 (137)
T ss_dssp HHHHHHHHHHTTCEEE----EESCHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHcCcEEE----EeCCHHHHHHHHHcCCCCEEE
Confidence 4556777788888774 345566677777776677777
No 56
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=28.94 E-value=1.6e+02 Score=21.10 Aligned_cols=44 Identities=7% Similarity=-0.044 Sum_probs=25.0
Q ss_pred HHHHHHHhC--CCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 14 KLLAEMLDS--GIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 14 ~L~~~l~~~--ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
++++.+++. ++.+...--+.+.+...++.+++.++..++++..+
T Consensus 42 ~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 42 NAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred HHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC
Confidence 455566654 56554433333334444777777777777776654
No 57
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=26.84 E-value=65 Score=23.14 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhc-CCeEEEEEE
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKE-TDVRIILGN 54 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~-~d~RIIi~~ 54 (146)
...-|.+.|++.|+++....-..||+.. +|+.+-+ .++.+|+..
T Consensus 32 n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 32 SGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred hHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3445778889999999887777777654 4555433 245566643
No 58
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=26.54 E-value=78 Score=22.10 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=46.3
Q ss_pred CCeEEEeeecchhHHHHHHhhhcC-CeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCcccCCCCCCCHHHH
Q psy3581 23 GIDVMVSHSFSDEISTALAKLKET-DVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSESWWNGSLPCPIEEL 101 (146)
Q Consensus 23 ni~v~~~~sf~~d~~~~l~~LK~~-d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~~Ww~~~~~Ct~~qi 101 (146)
+.+++.+.++ -+...++.|++. ..|=+++.+.++.+=.-+=.-...-+-+.+++.|-...- . --++++++|
T Consensus 26 ~~~iI~t~Gs--i~~~~l~~I~~~~~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~~~-g-----VE~a~~~~I 97 (119)
T 2fcj_A 26 PVVIVCTNGT--ISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYR-E-----VAAAPIWHL 97 (119)
T ss_dssp CCEEEECCSC--CCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTTTC-S-----TTTSCHHHH
T ss_pred CCCEEEeCCc--cCHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCCcc-C-----cccCCHHHH
Confidence 6788888777 233444444333 367777788876654444333333344444444433321 1 258999999
Q ss_pred HHhhccee
Q psy3581 102 VTALDGCI 109 (146)
Q Consensus 102 ~~a~~g~i 109 (146)
.+|++..-
T Consensus 98 ~~aL~~~~ 105 (119)
T 2fcj_A 98 AQVLLRAR 105 (119)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 99998864
No 59
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=26.26 E-value=95 Score=23.05 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcCCeEEEEEE
Q psy3581 13 NKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKETDVRIILGN 54 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~d~RIIi~~ 54 (146)
.-|.+.|++.|+++....-..||+.. +|+..-+.++.+|+..
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 45778888999999888777777654 4544432455666543
No 60
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=25.80 E-value=1e+02 Score=20.79 Aligned_cols=30 Identities=3% Similarity=-0.091 Sum_probs=17.4
Q ss_pred hHHHHHHhhhcCCeEEEEEEccHHHHHHHH
Q psy3581 35 EISTALAKLKETDVRIILGNFNEFWAKMIF 64 (146)
Q Consensus 35 d~~~~l~~LK~~d~RIIi~~~~~~~a~~vf 64 (146)
+..+.|+.|++.+.+++++...+....+-+
T Consensus 40 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~ 69 (162)
T 2p9j_A 40 LDGIGIKLLQKMGITLAVISGRDSAPLITR 69 (162)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCCCHHHHHH
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCcHHHHHH
Confidence 344567777777777766666554433333
No 61
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=25.52 E-value=1.2e+02 Score=21.11 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=22.7
Q ss_pred HHHHhhhcCCeEEEEEEccHHHHHHHHHHHHH
Q psy3581 38 TALAKLKETDVRIILGNFNEFWAKMIFCEAYR 69 (146)
Q Consensus 38 ~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYk 69 (146)
...+.++++++.|+.+...+....+-|++.+.
T Consensus 76 ~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~ 107 (179)
T 3ixr_A 76 LLLPQFEQINATVLGVSRDSVKSHDSFCAKQG 107 (179)
T ss_dssp HHHHHHHTTTEEEEEEESCCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 33566677788888888877777777777653
No 62
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=25.19 E-value=1.2e+02 Score=22.25 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCeEEEeee------------------------cchhHHHHHHhhhcCCeEEEEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSHS------------------------FSDEISTALAKLKETDVRIILGN 54 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~s------------------------f~~d~~~~l~~LK~~d~RIIi~~ 54 (146)
+...++.+++.|++++..=. +-...+..++..++.+.+||+-.
T Consensus 44 ~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vil~~ 110 (351)
T 3vup_A 44 IEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCL 110 (351)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCcEEEECcccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45667889999999998622 22334667888899999999765
No 63
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=25.02 E-value=2e+02 Score=20.99 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=47.7
Q ss_pred HHHH---hCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHHcCCCCCCeEEEEeccCCC
Q psy3581 17 AEML---DSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87 (146)
Q Consensus 17 ~~l~---~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYklgm~g~~YVWIl~gwy~~ 87 (146)
+.++ +.|++++....=..|+...|+.||+.+.+=|++..-+..+. +..+.||..+=++.+.|-....
T Consensus 109 ~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~ilveGG~~l~~----s~l~~gLvDel~l~iaP~llG~ 178 (219)
T 2azn_A 109 KKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNW----GMFKEGLVDEVSVYIAPKIFGG 178 (219)
T ss_dssp HHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHTTCCEEEEEECHHHHH----HHHHTTCCCEEEEEEESCCCCC
T ss_pred HHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHcCCCEEEEeeCHHHHH----HHHHCCCCcEEEEEEcCeeecC
Confidence 3456 77899876321114788999999999888777776664444 4457899999888888876654
No 64
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=24.79 E-value=1.6e+02 Score=20.26 Aligned_cols=44 Identities=16% Similarity=0.075 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEc-cHHHHH
Q psy3581 14 KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNF-NEFWAK 61 (146)
Q Consensus 14 ~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~-~~~~a~ 61 (146)
.+.+.|.+.|++++-..++...|. +.|++ +.+++.+.. ..+.|.
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~~a~---~~L~~-GI~v~~~~~~~veeal 114 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGSPGF---NFIKN-KMDVYIVPEMPVADAL 114 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBHHHH---HHHTT-TSEEEECCSCBHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCCHhHH---HHHHC-CCEEEEcCCCCHHHHH
Confidence 567778888999988888876665 66777 889888744 334444
No 65
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=24.40 E-value=1.3e+02 Score=21.63 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcC-CeEEEEEE
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKET-DVRIILGN 54 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~-d~RIIi~~ 54 (146)
....-|.+.|++.|+++....-..||+.. +|+.+.+. ++.+|+..
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred ccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 34456888999999999887777777654 56555443 46677644
No 66
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.25 E-value=2.1e+02 Score=21.83 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhc--CCeEEEEEEccHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKE--TDVRIILGNFNEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~--~d~RIIi~~~~~~~a~~vfC~AYklgm 72 (146)
|....+.+.+.+++.|+++....+ ..|+.. .++.+-+ .++.-|++.........++-+|.+.|+
T Consensus 19 ~~~~~~g~~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~gi 87 (350)
T 3h75_A 19 WVSYSQFMQAAARDLGLDLRILYA-ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGI 87 (350)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEC-TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEC-CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCC
Confidence 455667788999999999876532 334443 4565555 466655554433344455555555443
No 67
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=24.24 E-value=1.4e+02 Score=20.87 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=9.9
Q ss_pred HHHHhhhcCCeEEEEEEc
Q psy3581 38 TALAKLKETDVRIILGNF 55 (146)
Q Consensus 38 ~~l~~LK~~d~RIIi~~~ 55 (146)
..|+.+++.++.++++.-
T Consensus 66 ~ll~~~~~g~id~vvv~~ 83 (169)
T 3g13_A 66 RMINDCMNGEIDMVFTKS 83 (169)
T ss_dssp HHHHHHHTTCCSEEEESC
T ss_pred HHHHHHHcCCCcEEEEEe
Confidence 346666666555555543
No 68
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=23.73 E-value=72 Score=22.80 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcC-CeEEEEEEc-----cHHHHHHHHHHH
Q psy3581 12 HNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKET-DVRIILGNF-----NEFWAKMIFCEA 67 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~-d~RIIi~~~-----~~~~a~~vfC~A 67 (146)
..-|.+.|++.|+++....-..||+.. +|+.+.+. ++.+|+..- .-+..+.++.++
T Consensus 23 ~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 23 HLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATREL 87 (164)
T ss_dssp HHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHH
Confidence 345778889999999887777777554 55554432 455665432 224455555543
No 69
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=23.47 E-value=2.4e+02 Score=21.25 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHhCCCeEEEeeec------c-hh----------HHHHHHhhhcCCeEEEEEEc
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSF------S-DE----------ISTALAKLKETDVRIILGNF 55 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf------~-~d----------~~~~l~~LK~~d~RIIi~~~ 55 (146)
.....+.+.+++.|+++.....+ . .| ....++..++.+++.+++..
T Consensus 66 ~~~~~l~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~ 128 (309)
T 2hk0_A 66 AELATIRKSAKDNGIILTAGIGPSKTKNLSSEDAAVRAAGKAFFERTLSNVAKLDIHTIGGAL 128 (309)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCSSSCSSCSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred hhHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeec
Confidence 34677889999999999885432 1 12 33457778888999988753
No 70
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=23.38 E-value=1.3e+02 Score=22.09 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHH---HHHhhhcCCeEEEEEE--c---cHHHHHHHHHHHHHcCCCC
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEIST---ALAKLKETDVRIILGN--F---NEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~---~l~~LK~~d~RIIi~~--~---~~~~a~~vfC~AYklgm~g 74 (146)
...-|.+.|++.|+++....-..||+.. +|+.+.+ ++.+|+.. . .-+..+.++++|....+..
T Consensus 24 N~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~-~~DlVittGG~g~~~~D~T~ea~a~~~~~~l~~ 94 (172)
T 3kbq_A 24 NAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE-VSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRI 94 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH-HCSEEEEESCCSSSTTCCHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-cCCEEEEcCCCcCCcccchHHHHHHHcCCCeee
Confidence 3445788999999999888778887654 4444322 24455533 2 3355777777777665543
No 71
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.93 E-value=1.5e+02 Score=18.63 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
....|.+.|++.|..+.. ..++.++++.+++....++++....
T Consensus 19 ~~~~l~~~L~~~g~~v~~----~~~~~~a~~~l~~~~~dlvi~d~~l 61 (130)
T 3eod_A 19 FRSLLDSWFSSLGATTVL----AADGVDALELLGGFTPDLMICDIAM 61 (130)
T ss_dssp HHHHHHHHHHHTTCEEEE----ESCHHHHHHHHTTCCCSEEEECCC-
T ss_pred HHHHHHHHHHhCCceEEE----eCCHHHHHHHHhcCCCCEEEEecCC
Confidence 345677888889998754 4578888899988888899887653
No 72
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=22.54 E-value=98 Score=22.71 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=8.3
Q ss_pred HHHHHHHHhCCC-eEEE
Q psy3581 13 NKLLAEMLDSGI-DVMV 28 (146)
Q Consensus 13 ~~L~~~l~~~ni-~v~~ 28 (146)
+++.++|++.|+ +|+.
T Consensus 72 ~~~~~ef~~~g~d~Vig 88 (176)
T 4f82_A 72 VEHAEQLRAAGIDEIWC 88 (176)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhCCCCEEEE
Confidence 444455556666 4443
No 73
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.11 E-value=1.4e+02 Score=21.19 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH----HHHHHHHHHHHHcCC
Q psy3581 10 RAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE----FWAKMIFCEAYRIGM 72 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~----~~a~~vfC~AYklgm 72 (146)
+..+-+...|+.+|++|+.... ...|.+.++..++.++.+|.+.... ..+.++.=+.-+.|+
T Consensus 33 iG~~~va~~l~~~G~eVi~lG~-~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~ 98 (161)
T 2yxb_A 33 RGAKVVARALRDAGFEVVYTGL-RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGA 98 (161)
T ss_dssp HHHHHHHHHHHHTTCEEECCCS-BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCC
Confidence 4455666778888888876433 2355666777888888888877743 334444433334444
No 74
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=21.87 E-value=1.7e+02 Score=24.41 Aligned_cols=61 Identities=25% Similarity=0.344 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEee-ec--chhHHHHHHhhhcC-CeEEEEEE-ccHHHHHHHHHHHHHcCCCCCCeEEE
Q psy3581 13 NKLLAEMLDSGIDVMVSH-SF--SDEISTALAKLKET-DVRIILGN-FNEFWAKMIFCEAYRIGMIGRKYQWL 80 (146)
Q Consensus 13 ~~L~~~l~~~ni~v~~~~-sf--~~d~~~~l~~LK~~-d~RIIi~~-~~~~~a~~vfC~AYklgm~g~~YVWI 80 (146)
.+..+.+.+.|+.++... ++ +....+.++.+|+. +..||++. ..++.|+.+ .+| |.+++=+
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a-~~a------GAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKEL-IEN------GADGIKV 211 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHH-HHT------TCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHH-HHc------CCCEEEE
Confidence 356778888999998632 23 23345678888887 89999754 444555443 332 6777665
No 75
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=21.69 E-value=2.4e+02 Score=23.17 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCeEEEee---ecchhHHHHHHhhhcC--CeEEEEE-EccHHHHHHHHHHHHHcCCCCCCeEEE
Q psy3581 12 HNKLLAEMLDSGIDVMVSH---SFSDEISTALAKLKET--DVRIILG-NFNEFWAKMIFCEAYRIGMIGRKYQWL 80 (146)
Q Consensus 12 ~~~L~~~l~~~ni~v~~~~---sf~~d~~~~l~~LK~~--d~RIIi~-~~~~~~a~~vfC~AYklgm~g~~YVWI 80 (146)
..++.+.+.+.|+.++... +.+....+.++.+|+. +.-||.+ ...++.|+.+ .+. |.+++.+
T Consensus 101 ~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a----~~a---GaD~I~V 168 (361)
T 3r2g_A 101 ELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYL----ASC---GADIIKA 168 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHH----HHT---TCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHH----HHc---CCCEEEE
Confidence 3567788889999988753 2334555678888886 7889985 4556665543 233 5677765
No 76
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=21.53 E-value=1.3e+02 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhCCCeEEEeeecc----------------hhHHHHHHhhhcCCeEEEEEEccH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFS----------------DEISTALAKLKETDVRIILGNFNE 57 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~----------------~d~~~~l~~LK~~d~RIIi~~~~~ 57 (146)
....+.+.+++.|+++...++.. ++....++.+++.++++++.++.+
T Consensus 56 ~~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~n~~p 118 (367)
T 1tz9_A 56 EIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKP 118 (367)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 56778899999999998654332 123456788899999999886554
No 77
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.33 E-value=2.4e+02 Score=20.50 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecch--hHHHHHHhhhcCCeEEEEEEcc-HHHHHHHHHHHHHcC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSD--EISTALAKLKETDVRIILGNFN-EFWAKMIFCEAYRIG 71 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~--d~~~~l~~LK~~d~RIIi~~~~-~~~a~~vfC~AYklg 71 (146)
|....+.+.+.+++.|+++....+-.+ .....++.+.+.++.-|++... +......+-++-+.|
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~ 89 (293)
T 3l6u_A 23 AQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAG 89 (293)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcC
Confidence 455667788999999999977544321 2335577777777665555443 333234455555554
No 78
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=21.17 E-value=1.4e+02 Score=19.97 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=20.0
Q ss_pred HHHhhhcCCeEEEEEEccHHHHHHHHHHHH
Q psy3581 39 ALAKLKETDVRIILGNFNEFWAKMIFCEAY 68 (146)
Q Consensus 39 ~l~~LK~~d~RIIi~~~~~~~a~~vfC~AY 68 (146)
..+.+++++++||.+........+-|++.+
T Consensus 61 ~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 90 (163)
T 3gkn_A 61 LLPEFDKAGAKILGVSRDSVKSHDNFCAKQ 90 (163)
T ss_dssp HHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHh
Confidence 345566677777777777666666666654
No 79
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=21.14 E-value=1.4e+02 Score=20.88 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=9.5
Q ss_pred HHHHhhhcCC--eEEEEEEc
Q psy3581 38 TALAKLKETD--VRIILGNF 55 (146)
Q Consensus 38 ~~l~~LK~~d--~RIIi~~~ 55 (146)
..|+.+++.+ +.++++.-
T Consensus 64 ~ll~~~~~g~~~~d~lvv~~ 83 (167)
T 3guv_A 64 RMMEDIKSGKDGVSFVLVFK 83 (167)
T ss_dssp HHHHHHHTCTTCCSEEEESC
T ss_pred HHHHHHHcCCCCccEEEEEe
Confidence 3456666554 45555544
No 80
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=20.87 E-value=1.7e+02 Score=22.05 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=38.4
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEEEEcc-HHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIILGNFN-EFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi~~~~-~~~a~~vfC~AYklgm 72 (146)
|....+.+.+.+++.|+++.....-..|+. .+++.|-.+++..|++... +.....++-+|.+.|+
T Consensus 18 ~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a~~~gi 86 (316)
T 1tjy_A 18 FTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGV 86 (316)
T ss_dssp HHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCcC
Confidence 344556788888999999875321123444 4567777777776665543 3322445555666554
No 81
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=20.85 E-value=2.5e+02 Score=20.42 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhH---HHHHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEI---STALAKLKETDVRIILGNF-NEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~---~~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYklgm 72 (146)
|....+.+.+.+++.|+++....+ ..++ ...++.+.+.++.-|++.. .+......+-++.+.|+
T Consensus 20 ~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~i 87 (291)
T 3l49_A 20 DLKAYQAQIAEIERLGGTAIALDA-GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGI 87 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCC
Confidence 455667888999999999977533 3333 3456777666666665544 33444555656666544
No 82
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.72 E-value=1.7e+02 Score=18.57 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEcc
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFN 56 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~ 56 (146)
....|.+.|++.|+.|.. ..+..++++.+++....+|++...
T Consensus 18 ~~~~l~~~l~~~g~~v~~----~~~~~~a~~~l~~~~~dlvi~d~~ 59 (140)
T 3grc_A 18 IARLLNLMLEKGGFDSDM----VHSAAQALEQVARRPYAAMTVDLN 59 (140)
T ss_dssp HHHHHHHHHHHTTCEEEE----ECSHHHHHHHHHHSCCSEEEECSC
T ss_pred HHHHHHHHHHHCCCeEEE----ECCHHHHHHHHHhCCCCEEEEeCC
Confidence 345577778888888633 356777777887777788887654
No 83
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.67 E-value=2.6e+02 Score=20.68 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEEEEc
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIILGNF 55 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi~~~ 55 (146)
|....+.+.+.+++.|+++....+ ..++. ..++.+.+.++.-|++..
T Consensus 17 ~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~ 66 (313)
T 3m9w_A 17 WQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIP 66 (313)
T ss_dssp THHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 445567788888899998876544 33332 345666666655555443
No 84
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=20.59 E-value=1.7e+02 Score=21.43 Aligned_cols=7 Identities=0% Similarity=-0.016 Sum_probs=3.4
Q ss_pred EEEEecc
Q psy3581 78 QWLIIGM 84 (146)
Q Consensus 78 VWIl~gw 84 (146)
|+++.+-
T Consensus 154 V~vv~Da 160 (204)
T 3hu5_A 154 VVVVTDA 160 (204)
T ss_dssp EEEEEEE
T ss_pred EEEehhh
Confidence 4555443
No 85
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=20.48 E-value=1.2e+02 Score=23.56 Aligned_cols=89 Identities=15% Similarity=0.023 Sum_probs=56.8
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH---HHHHHHHHHHHHcCCCCCCeEEEEecc
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE---FWAKMIFCEAYRIGMIGRKYQWLIIGM 84 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~---~~a~~vfC~AYklgm~g~~YVWIl~gw 84 (146)
|.-...+|...-+..++-|+.. .|..|+. ++...+..++.+|.+.... .....+.-.|.++||-- +
T Consensus 86 F~gs~~dL~~ir~~v~lPvLrK-Dfi~~~~-qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~------l--- 154 (251)
T 1i4n_A 86 FKGDPAFVRAARNLTCRPILAK-DFYIDTV-QVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDS------L--- 154 (251)
T ss_dssp SCCCTHHHHHHHTTCCSCEEEE-CCCCSTH-HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEE------E---
T ss_pred cCCCHHHHHHHHHhCCCCEEEe-eCCCCHH-HHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeE------E---
Confidence 4445556655555567777754 4666666 6777999999999888765 45566666777777631 1
Q ss_pred CCCcccCCCCCC-CHHHHHHhhcc----eeEeeeccc
Q psy3581 85 YSESWWNGSLPC-PIEELVTALDG----CILTDLLPL 116 (146)
Q Consensus 85 y~~~Ww~~~~~C-t~~qi~~a~~g----~i~~~~~~~ 116 (146)
+.| +.+|+..|++- .+++....+
T Consensus 155 ---------vEv~~~eE~~~A~~l~g~~iIGinnr~l 182 (251)
T 1i4n_A 155 ---------VEVHSREDLEKVFSVIRPKIIGINTRDL 182 (251)
T ss_dssp ---------EEECSHHHHHHHHTTCCCSEEEEECBCT
T ss_pred ---------EEeCCHHHHHHHHhcCCCCEEEEeCccc
Confidence 222 56778777764 466665433
No 86
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=20.43 E-value=1.9e+02 Score=21.28 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEEEEcc-HHHHHHHHHHHHHcC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIILGNFN-EFWAKMIFCEAYRIG 71 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi~~~~-~~~a~~vfC~AYklg 71 (146)
|....+.+.+.+++.|+++.....-..|+. ..++.+.+.++.-|++... +......+-++.+.|
T Consensus 19 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~ 86 (303)
T 3d02_A 19 FNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAG 86 (303)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCC
Confidence 455567788899999999863221123443 3567776777766665443 333334444454544
No 87
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=20.41 E-value=1.7e+02 Score=19.84 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHhCCC----eEEEeeecchhHH--H-------HHHhhhcCCeEEEEEEc--cHHHHHHHHHHHHHcCCCC
Q psy3581 10 RAHNKLLAEMLDSGI----DVMVSHSFSDEIS--T-------ALAKLKETDVRIILGNF--NEFWAKMIFCEAYRIGMIG 74 (146)
Q Consensus 10 ~~~~~L~~~l~~~ni----~v~~~~sf~~d~~--~-------~l~~LK~~d~RIIi~~~--~~~~a~~vfC~AYklgm~g 74 (146)
.-.+++.+.|.+.|+ ++....++...-. + .+..+. ..+|.++-- ..+.+....++|-+-|-.|
T Consensus 13 ~kl~~Vk~AL~~~G~d~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~p--k~kieivV~d~~ve~vv~~I~~~a~tg~~G 90 (115)
T 3l7p_A 13 DKLEDLKAALVQSGFIKGMTISQVLGFGNQRGYTEYVRGQKITPTLLA--KVKVEIVAHDAAVEEMITTISQAVKTGEVG 90 (115)
T ss_dssp GGHHHHHHHHHHHTCGGGEEEEEEEEEC----------------CEEE--EEEEEEEECGGGHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHHCCCCccEEEEEEEeEcccCCCceeeccceeeecccc--eEEEEEEEcHHHHHHHHHHHHHHhcCCCCC
Confidence 445778888887776 5555556653211 1 111221 355555554 4477889999999999999
Q ss_pred CCeEEEEe
Q psy3581 75 RKYQWLII 82 (146)
Q Consensus 75 ~~YVWIl~ 82 (146)
.+=+|+.|
T Consensus 91 DGkIFV~~ 98 (115)
T 3l7p_A 91 DGKIFVSP 98 (115)
T ss_dssp -CEEEEEE
T ss_pred CcEEEEEE
Confidence 99999987
No 88
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=20.32 E-value=1.7e+02 Score=21.29 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=4.8
Q ss_pred EEEEEEccHH
Q psy3581 49 RIILGNFNEF 58 (146)
Q Consensus 49 RIIi~~~~~~ 58 (146)
+||+.....+
T Consensus 144 ~lvi~G~~T~ 153 (207)
T 1nf9_A 144 QLVLCGVYAH 153 (207)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEeeecC
Confidence 4555554444
No 89
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.29 E-value=1.1e+02 Score=22.74 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=38.3
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecchhHH---HHHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFSDEIS---TALAKLKETDVRIILGNF-NEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~~d~~---~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYklgm 72 (146)
|+...+.+.+.+++.|+++.....-..|+. ..++.+.+.++.-|++.. .+......+-++.+.|+
T Consensus 19 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~i 87 (305)
T 3g1w_A 19 WKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGI 87 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCC
Confidence 455667788999999999976322223443 456666666666555443 33323445555555543
No 90
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=20.27 E-value=2.6e+02 Score=20.55 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=53.1
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecc------------------hhHHHHHHhhhcCCeEEEEEEccHHHHHHHHHHHHH
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFS------------------DEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYR 69 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~------------------~d~~~~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYk 69 (146)
++..+--|...|++.|++|+....=+ .|.+..|+.+-+.|.-+++++..-+.|...+-. |+
T Consensus 21 q~p~~lYl~~~Lk~~G~~v~VA~npAAlkLlevaDPe~~Y~~~~~diD~~l~~i~e~~~d~~~~FvHNDAgvsY~~T-~~ 99 (157)
T 1kjn_A 21 QIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGIYTDEMVDLESCINELAEGDYEFLAGFVPNDAAAAYLVT-FA 99 (157)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHSTTCCSCSEEEEHHHHHHHCCTTSCSEEEEEESSHHHHHHHHH-HH
T ss_pred hhhHHHHHHHHHHhcCCeeEEecCHHHHhheeccCCCcchhcceeeHHHHHhhhhhcCCCEEEEEEecchhHHHHHH-HH
Confidence 34455567889999999997765432 156788999999999999999998888777653 33
Q ss_pred cCCCCCCeEEEEec
Q psy3581 70 IGMIGRKYQWLIIG 83 (146)
Q Consensus 70 lgm~g~~YVWIl~g 83 (146)
. .+..+-.=|+-|
T Consensus 100 ~-i~~~~~~aiVFg 112 (157)
T 1kjn_A 100 G-ILNTETLAIIFD 112 (157)
T ss_dssp H-HHCSEEEEEEEC
T ss_pred H-hcCCCeEEEEec
Confidence 3 566554445555
No 91
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.26 E-value=1.7e+02 Score=18.25 Aligned_cols=55 Identities=9% Similarity=-0.033 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCCCeEEEeeecchhHHHHHHhhhcCCeEEEEEEccH--HHHHHHHHHHHH
Q psy3581 11 AHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNE--FWAKMIFCEAYR 69 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~sf~~d~~~~l~~LK~~d~RIIi~~~~~--~~a~~vfC~AYk 69 (146)
....|.+.|++.|..|.. ..+..++++.+++....+|++...- ..+..++-+..+
T Consensus 15 ~~~~l~~~L~~~g~~v~~----~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 15 AAETFKELLEMLGFQADY----VMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp HHHHHHHHHHHTTEEEEE----ESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEE----ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 345677888888987643 4577888888888888889887653 334444433333
No 92
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=20.08 E-value=1.8e+02 Score=20.58 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=9.0
Q ss_pred HHHHHHhCCCeEEEeeecchh
Q psy3581 15 LLAEMLDSGIDVMVSHSFSDE 35 (146)
Q Consensus 15 L~~~l~~~ni~v~~~~sf~~d 35 (146)
|.+.|++.||+-+.-.++.+|
T Consensus 111 L~~~L~~~gi~~lvi~G~~t~ 131 (180)
T 1im5_A 111 LAKILRGNGVKRVYICGVATE 131 (180)
T ss_dssp HHHHHHHTTCCEEEEEEECTT
T ss_pred HHHHHHhCCCCEEEEEEeecC
Confidence 444444444443343444433
No 93
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=20.07 E-value=92 Score=22.10 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhCCCeEEEee--ecc-------hhHHH---HHHhhhcCCeEEEEEEccHHHHHHHHHHHHHc-CCCCCCe
Q psy3581 11 AHNKLLAEMLDSGIDVMVSH--SFS-------DEIST---ALAKLKETDVRIILGNFNEFWAKMIFCEAYRI-GMIGRKY 77 (146)
Q Consensus 11 ~~~~L~~~l~~~ni~v~~~~--sf~-------~d~~~---~l~~LK~~d~RIIi~~~~~~~a~~vfC~AYkl-gm~g~~Y 77 (146)
..+.+.+.|+..|+++.... .|. .|..- .++. ...--.++++....+.+.- .-++-.. | ..
T Consensus 62 ~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~-a~~~d~~vLvSgD~DF~pl-v~~lr~~~G----~~ 135 (165)
T 2qip_A 62 KQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEI-APDVDRVILVSGDGDFSLL-VERIQQRYN----KK 135 (165)
T ss_dssp HHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHH-GGGCSEEEEECCCGGGHHH-HHHHHHHHC----CE
T ss_pred hHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHh-hccCCEEEEEECChhHHHH-HHHHHHHcC----cE
Confidence 44678899999999987532 221 13322 2332 2333456666666654433 3334442 4 44
Q ss_pred EEEEeccCCCcccCCCCCCCHHHHHHhhcceeEeeec
Q psy3581 78 QWLIIGMYSESWWNGSLPCPIEELVTALDGCILTDLL 114 (146)
Q Consensus 78 VWIl~gwy~~~Ww~~~~~Ct~~qi~~a~~g~i~~~~~ 114 (146)
|.++. . + ..|++++.++.+..+.++..
T Consensus 136 V~v~g-~--~-------~~~s~~L~~~ad~fi~l~~~ 162 (165)
T 2qip_A 136 VTVYG-V--P-------RLTSQTLIDCADNFVAIDDD 162 (165)
T ss_dssp EEEEE-C--G-------GGSCHHHHHHSSEEEECSGG
T ss_pred EEEEe-C--C-------CcChHHHHHhCCEEEecchh
Confidence 55543 1 1 23667888888876665543
No 94
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.01 E-value=1.9e+02 Score=21.41 Aligned_cols=65 Identities=6% Similarity=-0.012 Sum_probs=39.7
Q ss_pred HHHhHHHHHHHHHhCCCeEEEeeecc-hhHH---HHHHhhhcCCeEEEEEEc-cHHHHHHHHHHHHHcCC
Q psy3581 8 MYRAHNKLLAEMLDSGIDVMVSHSFS-DEIS---TALAKLKETDVRIILGNF-NEFWAKMIFCEAYRIGM 72 (146)
Q Consensus 8 fs~~~~~L~~~l~~~ni~v~~~~sf~-~d~~---~~l~~LK~~d~RIIi~~~-~~~~a~~vfC~AYklgm 72 (146)
|....+.+.+.+++.|+++.....-. .|+. ..++.+.+.++.-|++.. .+......+-++.+.|+
T Consensus 18 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~gi 87 (297)
T 3rot_A 18 WTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNI 87 (297)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 45566778899999999997655321 2443 457777777777555543 33333444555555554
Done!