RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3581
         (146 letters)



>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 33.2 bits (74), Expect = 0.007
 Identities = 10/90 (11%), Positives = 28/90 (31%)

Query: 2   YFIRILMYRAHNKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAK 61
                 +       + E L+  ++         +    L +      R+I    +    +
Sbjct: 161 DRPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRRKGRVIYICSSPDAFR 220

Query: 62  MIFCEAYRIGMIGRKYQWLIIGMYSESWWN 91
            +   A   G+ G  Y +  + ++ +S  +
Sbjct: 221 NLMLLALNAGLTGEDYVFFHLDVFGQSLKS 250


>d2opla1 d.227.1.1 (A:4-185) Hypothetical protein GSU2788 {Geobacter
           sulfurreducens [TaxId: 35554]}
          Length = 182

 Score = 27.3 bits (60), Expect = 0.61
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 91  NGSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVSTV 131
                 P+E L+ AL GC+ T L+  + +  I + G+ S  
Sbjct: 75  ENRGANPVEYLLVALSGCLTTSLVAHAAARGIALRGVKSRY 115


>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio
           cholerae [TaxId: 666]}
          Length = 155

 Score = 25.9 bits (56), Expect = 1.6
 Identities = 8/45 (17%), Positives = 12/45 (26%)

Query: 87  ESWWNGSLPCPIEELVTALDGCILTDLLPLSTSGEITVSGIVSTV 131
                 +   P E  V AL  C +   L ++      V       
Sbjct: 49  VPLSVEANVDPEEAFVAALSSCHMLVFLSIAAKQRYLVESYTDNA 93


>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase
          {Escherichia coli [TaxId: 562]}
          Length = 261

 Score = 25.9 bits (55), Expect = 1.9
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 29 SHSFSDEISTALAKLKETDVR-IILGNFNEFWAKMIFCEAYRIGMIGRKYQWLIIGMYSE 87
          S  F D++  AL+ L   ++R IIL   +         + + +   GR        +   
Sbjct: 29 SKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQI 88

Query: 88 SWWNGSLPCP 97
          +      P P
Sbjct: 89 TRMIQKFPKP 98


>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
           protein PrpR {Escherichia coli [TaxId: 562]}
          Length = 186

 Score = 25.1 bits (55), Expect = 3.2
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 7/62 (11%)

Query: 14  KLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGMI 73
               +  +  +D     +  ++    + +LK      ++G      A +I   A   GM 
Sbjct: 110 VAFQKTFNLRLDQRSYIT-EEDARGQINELKANGTEAVVG------AGLITDLAEEAGMT 162

Query: 74  GR 75
           G 
Sbjct: 163 GI 164


>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 240

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 12 HNKLLAEMLDSGIDVMVSHSFSDEISTAL--AKLKETDVRIILGNF 55
          H  + + + ++G D   +    DE    L    L   DV +  G+ 
Sbjct: 29 HTVIASYLAEAGFDAATAVL--DEPEHGLTDEVLDRCDVLVWWGHI 72


>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter
           jejuni [TaxId: 197]}
          Length = 317

 Score = 24.3 bits (51), Expect = 6.9
 Identities = 11/67 (16%), Positives = 20/67 (29%)

Query: 13  NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72
            +L  E  +S  D+ ++   S+        L        L  F     +    E + I  
Sbjct: 41  KRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITK 100

Query: 73  IGRKYQW 79
             R   +
Sbjct: 101 RARIIAY 107


>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella
           pertussis [TaxId: 520]}
          Length = 318

 Score = 24.0 bits (50), Expect = 8.8
 Identities = 9/78 (11%), Positives = 22/78 (28%)

Query: 13  NKLLAEMLDSGIDVMVSHSFSDEISTALAKLKETDVRIILGNFNEFWAKMIFCEAYRIGM 72
            ++ AE   S  DV+++    + I      + +      L +      +      Y + +
Sbjct: 40  ERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSL 99

Query: 73  IGRKYQWLIIGMYSESWW 90
             R              +
Sbjct: 100 RDRVLYVEKDLKLDSFRY 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,522
Number of extensions: 25401
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.7 bits)