BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3586
(59 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75899|GABR2_HUMAN Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens
GN=GABBR2 PE=1 SV=1
Length = 941
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
MSSP++NNLII+G M +Y S+ GLD + S + + +CT R W+L G++ AFGAM
Sbjct: 514 MSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMF 572
>sp|O88871|GABR2_RAT Gamma-aminobutyric acid type B receptor subunit 2 OS=Rattus
norvegicus GN=Gabbr2 PE=1 SV=2
Length = 940
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
MSSP++NNLII+G M +Y S+ GLD + S + + +CT R W+L G++ AFGAM
Sbjct: 513 MSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMF 571
>sp|Q80T41|GABR2_MOUSE Gamma-aminobutyric acid type B receptor subunit 2 OS=Mus musculus
GN=Gabbr2 PE=2 SV=2
Length = 940
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
MSSP++NNLII+G M +Y S+ GLD + S + + +CT R W+L G++ AFGAM
Sbjct: 513 MSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMF 571
>sp|Q9Z0U4|GABR1_RAT Gamma-aminobutyric acid type B receptor subunit 1 OS=Rattus
norvegicus GN=Gabbr1 PE=1 SV=1
Length = 991
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 2 SSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
S P+LNNL +GC +V LGLD +P++C AR WLL GFSL +G+M
Sbjct: 624 SQPNLNNLTAVGCSLALAAVFPLGLDGYHIGRSQFPFVCQARLWLLGLGFSLGYGSMF 681
>sp|Q9WV18|GABR1_MOUSE Gamma-aminobutyric acid type B receptor subunit 1 OS=Mus musculus
GN=Gabbr1 PE=1 SV=1
Length = 960
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 2 SSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
S P+LNNL +GC +V LGLD +P++C AR WLL GFSL +G+M
Sbjct: 624 SQPNLNNLTAVGCSLALAAVFPLGLDGYHIGRSQFPFVCQARLWLLGLGFSLGYGSMF 681
>sp|Q9UBS5|GABR1_HUMAN Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens
GN=GABBR1 PE=1 SV=1
Length = 961
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 2 SSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
S P+LNNL +GC +V LGLD +P++C AR WLL GFSL +G+M
Sbjct: 625 SQPNLNNLTAVGCSLALAAVFPLGLDGYHIGRNQFPFVCQARLWLLGLGFSLGYGSMF 682
>sp|Q6PCP7|GP156_MOUSE Probable G-protein coupled receptor 156 OS=Mus musculus GN=Gpr156
PE=2 SV=2
Length = 798
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNL--TSIEAYPYICTARAWLLMAGFSLAFGAM 58
MSSP+LN + ++G TY+S G+ L +S+EA + R LL G SL FG +
Sbjct: 82 MSSPNLNVVTLLGSCLTYISAYLFGIQDALEGSSVEA---LIQTRLSLLCIGTSLVFGPI 138
Query: 59 L 59
L
Sbjct: 139 L 139
>sp|Q8K451|GP156_RAT Probable G-protein coupled receptor 156 OS=Rattus norvegicus
GN=Gpr156 PE=2 SV=1
Length = 792
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNL--TSIEAYPYICTARAWLLMAGFSLAFGAM 58
MSSP+LN + ++G TY S G+ L +S+EA + R LL G +L FG +
Sbjct: 82 MSSPNLNIVTLLGSCLTYSSAYLFGIQDALVGSSVEA---LIQTRLSLLCIGTTLVFGPI 138
Query: 59 L 59
L
Sbjct: 139 L 139
>sp|Q8NFN8|GP156_HUMAN Probable G-protein coupled receptor 156 OS=Homo sapiens GN=GPR156
PE=2 SV=2
Length = 814
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
MSSP+LN + ++G TY S G+ L I T R +L G SL FG +L
Sbjct: 82 MSSPNLNIVTLLGSCLTYSSAYLFGIQDVLVGSSMETLIQT-RLSMLCIGTSLVFGPIL 139
>sp|Q86HH3|GRLB_DICDI Metabotropic glutamate receptor-like protein B OS=Dictyostelium
discoideum GN=grlB PE=2 SV=2
Length = 755
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 2 SSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
+SP LI++GC+ ++ I N + C AR WLL G+++ G++L
Sbjct: 416 ASPAFLFLILMGCILIFIGCIIFSQSPNEGT-------CRARVWLLSIGYTIFLGSLL 466
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,988,002
Number of Sequences: 539616
Number of extensions: 454839
Number of successful extensions: 1419
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1410
Number of HSP's gapped (non-prelim): 17
length of query: 59
length of database: 191,569,459
effective HSP length: 32
effective length of query: 27
effective length of database: 174,301,747
effective search space: 4706147169
effective search space used: 4706147169
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)