Query psy3586
Match_columns 59
No_of_seqs 102 out of 177
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 20:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2sqc_A Squalene-hopene cyclase 37.6 35 0.0012 24.8 3.7 34 11-50 88-121 (631)
2 1w6k_A Lanosterol synthase; cy 34.3 43 0.0015 25.1 3.8 34 11-50 151-184 (732)
3 2gsm_A Cytochrome C oxidase su 18.0 89 0.003 23.0 2.8 23 1-23 133-159 (566)
4 2lor_A Transmembrane protein 1 20.9 31 0.0011 20.7 0.0 22 38-59 24-46 (108)
5 1v54_A Cytochrome C oxidase po 15.5 1.1E+02 0.0039 22.0 2.9 24 1-24 92-119 (514)
6 1fft_A Ubiquinol oxidase; elec 15.1 1.4E+02 0.0047 22.6 3.3 24 1-24 136-163 (663)
7 2jtw_A Transmembrane helix 7 o 13.2 1.2E+02 0.0042 13.7 1.6 12 41-52 8-19 (26)
8 1iq5_B Ca2+/calmodulin depende 11.1 1.2E+02 0.0041 13.8 1.3 13 4-16 5-17 (27)
9 4b19_A PEPA1; toxin, toxin apo 9.3 1.5E+02 0.0052 13.8 1.3 11 10-20 11-21 (30)
10 1ckk_B Camkk, protein (RAT Ca2 9.0 96 0.0033 14.0 0.5 13 3-15 4-16 (26)
No 1
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=37.56 E-value=35 Score=24.85 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcccCCCCCCcccchhhhhhhHHHHHHH
Q psy3586 11 IIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAG 50 (59)
Q Consensus 11 l~G~il~y~svil~gld~~~~~~~~~~~~C~~r~Wll~iG 50 (59)
+.|.++.|.+.=++|.+.+ .+.+=++|.|++.-|
T Consensus 88 ~~~t~~~y~aLrllg~~~~------~~~~~~ar~~i~~~G 121 (631)
T 2sqc_A 88 LDTTIEAYVALKYIGMSRD------EEPMQKALRFIQSQG 121 (631)
T ss_dssp HHHHHHHHHHHHHHTCCTT------SHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhcCCCCC------hHHHHHHHHHHHHcC
Confidence 5789999999999998765 256778999998876
No 2
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=34.31 E-value=43 Score=25.08 Aligned_cols=34 Identities=29% Similarity=0.546 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcccCCCCCCcccchhhhhhhHHHHHHH
Q psy3586 11 IIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAG 50 (59)
Q Consensus 11 l~G~il~y~svil~gld~~~~~~~~~~~~C~~r~Wll~iG 50 (59)
++|+++.|.+.=+.|.+.+ .+.+=++|.|++.-|
T Consensus 151 ~~~T~~~Y~aLrl~G~~~~------~~~~~~ar~~i~~~G 184 (732)
T 1w6k_A 151 VFGTALNYVSLRILGVGPD------DPDLVRARNILHKKG 184 (732)
T ss_dssp HHHHHHHHHHHHHTTCCTT------SHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCC------cHHHHHHHHHHHHcC
Confidence 5789999999999998665 267789999999988
No 3
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=18.01 E-value=89 Score=23.01 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=18.3
Q ss_pred CCcHHHHH----HHHHHHHHHHHHHHh
Q psy3586 1 MSSPHLNN----LIIIGCMFTYMSVIF 23 (59)
Q Consensus 1 mSSP~lN~----lil~G~il~y~svil 23 (59)
|..|++|| +...|.++...|.+.
T Consensus 133 mafprln~~sfwl~~~~~~l~~~s~~~ 159 (566)
T 2gsm_A 133 MAFPRMNNLSYWLYVAGTSLAVASLFA 159 (566)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899998 667788887777766
No 4
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=20.87 E-value=31 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=14.7
Q ss_pred hhhhhhHHHHHHH-HHhhhccCC
Q psy3586 38 YICTARAWLLMAG-FSLAFGAML 59 (59)
Q Consensus 38 ~~C~~r~Wll~iG-Ftl~fGamF 59 (59)
.-||.|.-+-.++ |.++||+.|
T Consensus 24 ~~CqS~Af~~Gl~tF~lG~~~~f 46 (108)
T 2lor_A 24 AACQSHAFMKGVFTFVTGTGMAF 46 (108)
Confidence 5799998866554 555555544
No 5
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ...
Probab=15.51 E-value=1.1e+02 Score=22.03 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=18.1
Q ss_pred CCcHHHHH----HHHHHHHHHHHHHHhc
Q psy3586 1 MSSPHLNN----LIIIGCMFTYMSVIFL 24 (59)
Q Consensus 1 mSSP~lN~----lil~G~il~y~svil~ 24 (59)
|+.|++|| +...|.++...|.++=
T Consensus 92 mafprln~~sfwl~~~~~~l~~~s~~~~ 119 (514)
T 1v54_A 92 MAFPRMNNMSFWLLPPSFLLLLASSMVE 119 (514)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67899998 4567777777777663
No 6
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1
Probab=15.10 E-value=1.4e+02 Score=22.58 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=18.2
Q ss_pred CCcHHHHH----HHHHHHHHHHHHHHhc
Q psy3586 1 MSSPHLNN----LIIIGCMFTYMSVIFL 24 (59)
Q Consensus 1 mSSP~lN~----lil~G~il~y~svil~ 24 (59)
|..|++|| +...|.++...|.++=
T Consensus 136 mafPrLn~~sfWl~~~~~~l~~~S~~~g 163 (663)
T 1fft_A 136 VAFPFLNNLSFWFTVVGVILVNVSLGVG 163 (663)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 67899999 5567777777777653
No 7
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=13.19 E-value=1.2e+02 Score=13.66 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHH
Q psy3586 41 TARAWLLMAGFS 52 (59)
Q Consensus 41 ~~r~Wll~iGFt 52 (59)
-.|.|-|+++-+
T Consensus 8 ylRlwaLsLaH~ 19 (26)
T 2jtw_A 8 YLRLWALSLAHA 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhhhHH
Confidence 469999998765
No 8
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=11.10 E-value=1.2e+02 Score=13.79 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q psy3586 4 PHLNNLIIIGCMF 16 (59)
Q Consensus 4 P~lN~lil~G~il 16 (59)
|.+..+|++++.+
T Consensus 5 P~l~Tvilvk~Ml 17 (27)
T 1iq5_B 5 PRLDTLILVKAMG 17 (27)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHH
Confidence 6778888877654
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=9.29 E-value=1.5e+02 Score=13.76 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q psy3586 10 IIIGCMFTYMS 20 (59)
Q Consensus 10 il~G~il~y~s 20 (59)
++.||+..+.+
T Consensus 11 visGcivalF~ 21 (30)
T 4b19_A 11 VISGCAIAFFS 21 (30)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46788887764
No 10
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=8.98 E-value=96 Score=13.99 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHH
Q psy3586 3 SPHLNNLIIIGCM 15 (59)
Q Consensus 3 SP~lN~lil~G~i 15 (59)
=|.+..+|++++.
T Consensus 4 IP~l~Tvilvk~M 16 (26)
T 1ckk_B 4 IPSWTTVILVKSM 16 (26)
T ss_dssp SCCHHHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 3777888887764
Done!