Query psy3586
Match_columns 59
No_of_seqs 102 out of 177
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 20:24:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3586.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3586hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w6ka2 a.102.4.2 (A:100-378) 51.5 8.5 0.00062 24.5 3.8 34 11-50 52-85 (279)
2 d2sqca2 a.102.4.2 (A:37-307) S 39.4 17 0.0012 22.1 3.7 34 11-50 52-85 (271)
3 d1v54c_ f.25.1.1 (C:) Mitochon 18.1 61 0.0044 19.6 3.4 17 3-19 127-143 (259)
4 d1m56c_ f.25.1.1 (C:) Bacteria 12.3 1E+02 0.0076 18.3 3.4 19 3-21 132-150 (265)
5 d3dtua1 f.24.1.1 (A:14-551) Ba 12.1 81 0.0059 21.4 3.0 26 1-26 120-149 (538)
6 d1ffta_ f.24.1.1 (A:) Cytochro 11.8 1.1E+02 0.0079 20.3 3.6 23 1-23 85-111 (501)
7 d1q90r_ f.23.12.1 (R:) ISP sub 11.7 71 0.0052 14.5 1.9 13 5-17 11-23 (39)
8 d1ppjc1 f.32.1.1 (C:261-379) M 6.5 2.1E+02 0.015 15.2 5.2 40 12-51 29-72 (119)
9 d1n93x_ a.206.1.1 (X:) P40 nuc 6.0 85 0.0062 20.3 0.9 17 41-57 171-187 (343)
10 d1v54a_ f.24.1.1 (A:) Mitochon 5.2 2.9E+02 0.021 18.4 3.4 24 1-24 92-119 (514)
No 1
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.48 E-value=8.5 Score=24.47 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcccCCCCCCcccchhhhhhhHHHHHHH
Q psy3586 11 IIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAG 50 (59)
Q Consensus 11 l~G~il~y~svil~gld~~~~~~~~~~~~C~~r~Wll~iG 50 (59)
+.|+.+.|.+.-+.|.|.+. +.+=++|.|++.-|
T Consensus 52 i~~T~~ay~ALrl~G~~~~~------p~m~rAr~wI~~~G 85 (279)
T d1w6ka2 52 VFGTALNYVSLRILGVGPDD------PDLVRARNILHKKG 85 (279)
T ss_dssp HHHHHHHHHHHHHTTCCTTS------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCc------HHHHHHHHHHHhCC
Confidence 56899999999999987763 55778999999877
No 2
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=39.37 E-value=17 Score=22.14 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcccCCCCCCcccchhhhhhhHHHHHHH
Q psy3586 11 IIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAG 50 (59)
Q Consensus 11 l~G~il~y~svil~gld~~~~~~~~~~~~C~~r~Wll~iG 50 (59)
+.+....|.+.-+.|.+.+. +.+.++|.|+++.|
T Consensus 52 ~~~T~~~~~AL~~~g~~~~~------~~~~ra~~~i~~~G 85 (271)
T d2sqca2 52 LDTTIEAYVALKYIGMSRDE------EPMQKALRFIQSQG 85 (271)
T ss_dssp HHHHHHHHHHHHHHTCCTTS------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCch------HHHHHHHHHHHHcC
Confidence 45788999999888876542 56889999999886
No 3
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.07 E-value=61 Score=19.57 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy3586 3 SPHLNNLIIIGCMFTYM 19 (59)
Q Consensus 3 SP~lN~lil~G~il~y~ 19 (59)
-|-+|.++++.+-....
T Consensus 127 lpllnT~vLl~Ss~t~~ 143 (259)
T d1v54c_ 127 VPLLNTSVLLASGVSIT 143 (259)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36778877776665433
No 4
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.30 E-value=1e+02 Score=18.34 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q psy3586 3 SPHLNNLIIIGCMFTYMSV 21 (59)
Q Consensus 3 SP~lN~lil~G~il~y~sv 21 (59)
-|-+|.++++.+..+..-.
T Consensus 132 l~l~nT~iLl~Ss~~~~~a 150 (265)
T d1m56c_ 132 LPLINTLILLCSGCAATWA 150 (265)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccHHHHHHH
Confidence 4778888888776665543
No 5
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.09 E-value=81 Score=21.43 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=21.2
Q ss_pred CCcHHHHH----HHHHHHHHHHHHHHhccc
Q psy3586 1 MSSPHLNN----LIIIGCMFTYMSVIFLGL 26 (59)
Q Consensus 1 mSSP~lN~----lil~G~il~y~svil~gl 26 (59)
|+-|++|+ +...|.++.+.|.+.-+-
T Consensus 120 mafPRlN~~sfWl~~~~~~l~~~s~~~~~~ 149 (538)
T d3dtua1 120 MAFPRMNNLSYWLYVAGTSLAVASLFAPGG 149 (538)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTTSBCG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56799999 688899999999887643
No 6
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=11.80 E-value=1.1e+02 Score=20.32 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=15.3
Q ss_pred CCcHHHHHH---H-HHHHHHHHHHHHh
Q psy3586 1 MSSPHLNNL---I-IIGCMFTYMSVIF 23 (59)
Q Consensus 1 mSSP~lN~l---i-l~G~il~y~svil 23 (59)
|+.|++|++ + ..|.++...+...
T Consensus 85 mafPrln~~sfWl~~~~~~l~~~s~~~ 111 (501)
T d1ffta_ 85 VAFPFLNNLSFWFTVVGVILVNVSLGV 111 (501)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHhHHHHHHHHHHHHHHHhhhcccc
Confidence 678999998 3 4555655555544
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.72 E-value=71 Score=14.55 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q psy3586 5 HLNNLIIIGCMFT 17 (59)
Q Consensus 5 ~lN~lil~G~il~ 17 (59)
++=|++++|++-.
T Consensus 11 ~~MNLll~G~~~~ 23 (39)
T d1q90r_ 11 NIMNLILAGGAGL 23 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccch
Confidence 4567788887644
No 8
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.52 E-value=2.1e+02 Score=15.21 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhccc----CCCCCCcccchhhhhhhHHHHHHHH
Q psy3586 12 IGCMFTYMSVIFLGL----DSNLTSIEAYPYICTARAWLLMAGF 51 (59)
Q Consensus 12 ~G~il~y~svil~gl----d~~~~~~~~~~~~C~~r~Wll~iGF 51 (59)
.|-+.+-.|++.+.+ |...+....+.-.++...|++..-|
T Consensus 29 gGvl~m~~si~il~~lP~l~~~~~~s~~~~~~~~~~fw~fv~~f 72 (119)
T d1ppjc1 29 GGVLALAFSILILALIPLLHTSKQRSMMFRPLSQCLFWALVADL 72 (119)
T ss_dssp HHHHHHHHHHHGGGTHHHHCCCSSSSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCeeChHHHHHHHHHHHHH
Confidence 355666666655433 4444443344457888888766544
No 9
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus [TaxId: 12455]}
Probab=6.00 E-value=85 Score=20.26 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHhhhcc
Q psy3586 41 TARAWLLMAGFSLAFGA 57 (59)
Q Consensus 41 ~~r~Wll~iGFtl~fGa 57 (59)
++|+|+=++-||+-||-
T Consensus 171 ~~~pwvg~~~~~~l~~d 187 (343)
T d1n93x_ 171 NGQPWVGSFVLSLLTTD 187 (343)
T ss_dssp HTSTTHHHHHHHHHHCC
T ss_pred ccCccHHHHHHHHHhcc
Confidence 36999999999998873
No 10
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.23 E-value=2.9e+02 Score=18.37 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=18.1
Q ss_pred CCcHHHHHH----HHHHHHHHHHHHHhc
Q psy3586 1 MSSPHLNNL----IIIGCMFTYMSVIFL 24 (59)
Q Consensus 1 mSSP~lN~l----il~G~il~y~svil~ 24 (59)
|+=|++|++ ...|.++...|.+.-
T Consensus 92 mafPRlN~~sfWl~~~~~~ll~~s~~~~ 119 (514)
T d1v54a_ 92 MAFPRMNNMSFWLLPPSFLLLLASSMVE 119 (514)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 567999986 667888888887663
Done!