RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3586
         (59 letters)



>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR.
           This is a domain of seven transmembrane regions that
          forms the C-terminus of some subclass 3
          G-coupled-protein receptors. It is often associated
          with a downstream cysteine-rich linker domain, NCD3G
          pfam07562, which is the human sweet-taste receptor, and
          the N-terminal domain, ANF_receptor pfam01094. The
          seven TM regions assemble in such a way as to produce a
          docking pocket into which such molecules as cyclamate
          and lactisole have been found to bind and consequently
          confer the taste of sweetness.
          Length = 238

 Score = 33.0 bits (76), Expect = 0.004
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1  MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
           S   L+ L+++G +  ++S           +       C  R +L   GF+L F  +L
Sbjct: 24 ASGRELSFLLLLGLLLCFLSTFLFIGKPTDAT-------CILRRFLFGLGFTLCFSCLL 75


>gnl|CDD|236279 PRK08508, PRK08508, biotin synthase; Provisional.
          Length = 279

 Score = 31.9 bits (73), Expect = 0.007
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)

Query: 8   NLIIIGC--MFTYMSVIFL---GLDS---NL-TSIEAYPYICTARAW 45
            L +I C    +   +  L   G+ S   NL TS E +P ICT   W
Sbjct: 90  GLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTW 136


>gnl|CDD|191696 pfam07168, Ureide_permease, Ureide permease.  Heterocyclic nitrogen
           compounds may serve as nitrogen sources or nitrogen
           transport compounds in plants that are not able to fix
           nitrogen. This family represents ureide permease, a
           transporter of a wide spectrum of oxo derivatives of
           heterocyclic nitrogen compounds, including allantoin,
           uric acid and xanthine; it has 10 putative transmembrane
           domains with a large cytosolic central domain containing
           a 'Walker A' motif. Ureide permease is likely to
           transport other purine degradation products when
           nitrogen sources are low. Transport is dependent on
           glucose and a proton gradient. The family is found in
           bacteria, plants and yeast.
          Length = 336

 Score = 25.2 bits (55), Expect = 1.9
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 10  IIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFG 56
           II+   F Y  V  LGL    +S++AY      R W L+AG    FG
Sbjct: 274 IILNIRFLYRPV--LGLPR--SSLKAYLGDWNGRGWALLAGLLCGFG 316


>gnl|CDD|182453 PRK10429, PRK10429, melibiose:sodium symporter; Provisional.
          Length = 473

 Score = 23.9 bits (52), Expect = 6.1
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 10  IIIGCMFTYMSVIFLGLDSNLTS-------IEAYPYICTARAWLLMAGFSLAF 55
           I+ G  +T M + F  L   LT        +  YP    + A  + AGF+L F
Sbjct: 114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166


>gnl|CDD|224811 COG1899, DYS1, Deoxyhypusine synthase [Posttranslational
          modification, protein turnover, chaperones].
          Length = 318

 Score = 23.4 bits (51), Expect = 7.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 11 IIGCMFTYMSVIFLGLDSNLTS 32
          I+  M      +FLGL  NL S
Sbjct: 46 ILREMLESRVTVFLGLTGNLVS 67


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0789    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,999,088
Number of extensions: 205635
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 28
Length of query: 59
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 28
Effective length of database: 9,562,628
Effective search space: 267753584
Effective search space used: 267753584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.1 bits)