RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3587
         (195 letters)



>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
           [TaxId: 1423]}
          Length = 273

 Score = 55.2 bits (132), Expect = 5e-10
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 43  VVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPYSTV 102
           +      PG T   Q + +   + L D PG+++P    +   V +       +++    +
Sbjct: 137 IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDE--LVGLRLAVTGAIKDSIINL 194

Query: 103 QYLAERMDLIKLLHIKHPD--------DDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRA 154
           Q +A     ++ L   +P+        D+      ++ D   +KR  +    G  +  + 
Sbjct: 195 QDVAVF--GLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLM-SGGLINYDKT 251

Query: 155 ANELL---RMATEGRICL 169
              ++   R    GR+  
Sbjct: 252 TEVIIRDIRTEKFGRLSF 269


>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
           KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 433

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 12/94 (12%)

Query: 77  SKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWA 136
           S +  P  +L           P S  ++     +  +L       +D+ +    + D   
Sbjct: 24  SSLSAPPFIL----------SPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEV 73

Query: 137 QKRSY--MTAKTGRYDSYRAANELLRMATEGRIC 168
           +      M A T  + S   +    R  + G   
Sbjct: 74  ESPELARMLAVTKWFISTLKSQYCSRNESLGSEK 107


>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 225

 Score = 26.2 bits (57), Expect = 2.7
 Identities = 8/47 (17%), Positives = 12/47 (25%)

Query: 45  SVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 91
            + R    T   Q +       + D PG           + L   F 
Sbjct: 129 KLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFK 175



 Score = 25.4 bits (55), Expect = 4.3
 Identities = 6/29 (20%), Positives = 9/29 (31%)

Query: 3   SVSRTPGHTKHFQTIFLTDNIRLCDCPGL 31
            + R    T   Q +       + D PG 
Sbjct: 129 KLQRGRHTTTTAQLLKFDFGGYVVDTPGF 157


>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 359

 Score = 26.4 bits (58), Expect = 2.7
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 110 DLIKLLHIKHPDDDEYWCAMDICDGW-----AQKRSYMTAKTGRYDSYRAANELLRMATE 164
           DL++L HIK  ++     A  +  GW     A K   ++ +T +   Y  A E ++   +
Sbjct: 177 DLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKD 236

Query: 165 GRICLCLMPPQYLSKQGVSKH 185
               + L+    L ++ +   
Sbjct: 237 ELEIIHLIDEYRLVREHLLTI 257


>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA,
          N-terminal domain {Synechococcus elongatus [TaxId:
          32046]}
          Length = 105

 Score = 25.1 bits (55), Expect = 3.1
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 24/95 (25%)

Query: 4  VSRTPGHTKHFQTIFLTDNIRLCD--CPGLVFPSKVPKPLQVVSVSRTPGHTKHFQTIFL 61
          V   P      Q +       +             VP  LQV++V+  P   ++++ +  
Sbjct: 19 VDTRPLSQHIVQRV-----KNILAAVEAT------VPISLQVINVADQPQLVEYYRLVVT 67

Query: 62 TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 96
                   P LV     P   QVL G     QL 
Sbjct: 68 ---------PALV--KIGPGSRQVLSGIDLTDQLA 91


>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC
           {Klebsiella pneumoniae [TaxId: 573]}
          Length = 254

 Score = 25.8 bits (56), Expect = 3.7
 Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 11/65 (16%)

Query: 95  LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAM-------DICDGWAQKRSYMTAKTG 147
           + +  S   +           HI HP    Y  AM           GW   R Y      
Sbjct: 2   ITDTLSPQAFEEALRAKGDFYHIHHP----YHIAMHNGDATRKQIQGWVANRFYYQTTIP 57

Query: 148 RYDSY 152
             D+ 
Sbjct: 58  LKDAA 62


>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
           anthracis [TaxId: 1392]}
          Length = 292

 Score = 25.2 bits (54), Expect = 6.7
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 121 DDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY--LS 178
             +E             KR  + A TG  +++ + +   +    G   + L+ P Y   S
Sbjct: 54  TSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPS 113

Query: 179 KQGVSKHSR 187
           ++G+ +H +
Sbjct: 114 QEGMYQHFK 122


>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 128

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 169 LCLMPPQYLSKQGVSKHSRPA 189
           LC  PP+ L +Q V +  RP+
Sbjct: 6   LCKTPPKVLVRQFVERFERPS 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 731,208
Number of extensions: 31989
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 11
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.5 bits)