BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3589
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 372 CVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKP 431
VG PN GKS+++N + G++ SV PG TK Q L + +++ D PG+++ + +
Sbjct: 104 IVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSED 163
Query: 432 LQ---VLMGSFPIAQLRE 446
L +L+GS P+ ++ +
Sbjct: 164 LAAKLLLVGSLPVERIED 181
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPG 421
+ VG+ NVGKSSL+NA+ RK+ VS+TPG T+ + D PG
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPG 77
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 361 EKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN---IRLC 417
EK SG + I VG+PNVGKS+L+N ++G KV +S P T+ LT+ I
Sbjct: 3 EKTYSGFVAI--VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFV 60
Query: 418 DCPGLVFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDD 472
D PGL KP+ L G F ++ E + V + +D L H P+D+
Sbjct: 61 DTPGL------HKPMDAL-GEFMDQEVYEALADVNAVVWVVD---LRHPPTPEDE 105
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 361 EKYKSGVL-TIGCVGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLTDNIRLCD 418
E+Y G L I G+ NVGKSS +N+++ RK + S PG T+ + D + D
Sbjct: 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVD 75
Query: 419 CPGLVFPSKVPKPLQVLMGSFPIAQLREPY-STVQYLAERMDLIKLLHIKHPDD 471
PG F +KV K + G ++ E Y +T + L + ++ L H DD
Sbjct: 76 VPGYGF-AKVSKSEREAWG-----RMIETYITTREELKAVVQIVDLRHAPSNDD 123
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTDNIRLCDCPGLVF-- 424
+ + G+ N GKSS +N + +K ++ S+TPG T+ + D RL D PG +
Sbjct: 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 86
Query: 425 -PSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMD---LIKLLHIKHPDDD 472
P ++ + Q +G +YL +R L+ L+ I+HP D
Sbjct: 87 VPEEMKRKWQRALG--------------EYLEKRQSLQGLVVLMDIRHPLKD 124
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 362 KYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
KY V+ +G+PNVGKSSL+NA++G + V VS G T+
Sbjct: 190 KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTR 231
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK---HFQTIFLTDNIRLCDCPGL 422
+ VG+PNVGKS++ N I G ++ V TPG T+ + +L + L D G+
Sbjct: 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK-HFQTIFLTDN--IRLCDCPGL 422
GV T+ G+PN GKS+L+N ++G++ VS PG T+ + + F+ D RL D GL
Sbjct: 233 GVSTV-IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 362 KYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
KY V+ +G+PNVGKSSL+NA +G + V VS G T+
Sbjct: 170 KYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTR 211
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK---HFQTIFLTDNIRLCDCPGL 422
+ VG+PNVGKS++ N I G ++ V TPG T+ + +L + L D G+
Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 372 CVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFP 425
+G PNVGKS+L+N + + + PG T Q + + + L D PG+++P
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP 178
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 17/63 (26%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH----------FQTIFLTDNIRLCDC 419
I VG+PNVGKS+L+N ++G+K+ SR T+H +Q I++ D
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-------DT 60
Query: 420 PGL 422
PGL
Sbjct: 61 PGL 63
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 17/63 (26%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH----------FQTIFLTDNIRLCDC 419
I VG+PNVGKS+L+N ++G+K+ SR T+H +Q I++ D
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-------DT 63
Query: 420 PGL 422
PGL
Sbjct: 64 PGL 66
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH----FQTIFLTDNIRLCDCPGLVFP 425
+ VG+PNVGKS+L+N ++G KV +S G T+ + I I D PG+ P
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 426 SK 427
K
Sbjct: 72 KK 73
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH----FQTIFLTDNIRLCDCPGLVFP 425
+ VG+PNVGKS+L+N ++G KV +S G T+ + I I D PG+ P
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 426 SK 427
K
Sbjct: 73 KK 74
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
+ + VG+PNVGKS+L NAI+ ++ VS PG T+
Sbjct: 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
T+ VG+PNVGKS+L N ++ +K V G T+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTR 37
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT-IFLTDNIR--LCDCPGLVFPSKVP 429
VG+PNVGKSSL N ++ ++ V+ PG T+ + + TD R L D GL K
Sbjct: 7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66
Query: 430 KPLQ 433
K +Q
Sbjct: 67 KKIQ 70
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-----IRLCDCPGL 422
LTI +G+ VGKSS +N+I+G +VVS+S P ++ + + ++ + + + D PGL
Sbjct: 40 LTILVMGKGGVGKSSTVNSIIGERVVSIS--PFQSEGPRPVMVSRSRAGFTLNIIDTPGL 97
Query: 423 V 423
+
Sbjct: 98 I 98
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-----IRLCDCPGL 422
LTI G+ VGKSS +N+I+G +VVS+S P ++ + + ++ + + + D PGL
Sbjct: 40 LTILVXGKGGVGKSSTVNSIIGERVVSIS--PFQSEGPRPVXVSRSRAGFTLNIIDTPGL 97
Query: 423 V 423
+
Sbjct: 98 I 98
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 374 GQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
G+PN GKSSL+NA+ GR+ V+ G T+
Sbjct: 14 GRPNAGKSSLLNALAGREAAIVTDIAGTTR 43
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 374 GQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
G+PN GKSSL+NA+ GR+ V+ G T+
Sbjct: 11 GRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 374 GQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
G+PN GKSSL+NA+ GR+ V+ G T+
Sbjct: 11 GRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKV 428
TI G+ NVGKS+L+ + G+KV R PG T+ I N ++ D PG F +
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKR-PGVTRKIIEIEWK-NHKIIDXPGFGFXXGL 60
Query: 429 PKPLQ 433
PK +Q
Sbjct: 61 PKEVQ 65
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH--FQTIFL--TDNIRLCDCPGL 422
I G+ NVGKSS MNA++G+ V VS G T ++++ L + L D PGL
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKV-------VSVSRTPGHTKHFQTIFLTDNIRLCDCPG 421
T+ VG PNVGK+++ NA+ G + V+V + G ++ + FL + D PG
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFL-----VVDLPG 59
Query: 422 L 422
+
Sbjct: 60 I 60
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF---QTIFLTDNIRLCDCPGL 422
L + VG+PNVGKS+L+N ++ V+ PG T+ + + R+ D G+
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV 301
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 361 EKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK 403
E ++G L + VG+PNVGKSSL+NA V+ PG T+
Sbjct: 219 ELLRTG-LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTR 260
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 14/62 (22%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRK-------VVSVSRTPGHTKHFQTIFLTDN-IRLCDC 419
LTIG +G PN GK++L N + G + V+V R G F T TD+ + L D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEG---QFST---TDHQVTLVDL 57
Query: 420 PG 421
PG
Sbjct: 58 PG 59
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 14/62 (22%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRK-------VVSVSRTPGHTKHFQTIFLTDN-IRLCDC 419
LTIG +G PN GK++L N + G + V+V R G F T TD+ + L D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEG---QFST---TDHQVTLVDL 57
Query: 420 PG 421
PG
Sbjct: 58 PG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 14/62 (22%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRK-------VVSVSRTPGHTKHFQTIFLTDN-IRLCDC 419
LTIG +G PN GK++L N + G + V+V R G F T TD+ + L D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEG---QFST---TDHQVTLVDL 57
Query: 420 PG 421
PG
Sbjct: 58 PG 59
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 358 EVHEKYKSG--VLTIGCVGQPNVGKSSLMNAIM----GR-KVVSVSRTPGHTKHFQTIFL 410
E +Y+ G V +GC NVGKS+ +N I+ G+ V++ S PG T I L
Sbjct: 154 EAINRYREGGDVYVVGCT---NVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL 210
Query: 411 TDNIRLCDCPGLV 423
L D PG++
Sbjct: 211 ESGATLYDTPGII 223
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 364 KSGVLTIGCVGQPNVGKSSLMNAIMGR-------KVVSVSRTPGHTKHFQTIFLTDNIRL 416
++GV ++G VG P+VGKS+L++ + G + ++ PG ++ I++
Sbjct: 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA-----KIQM 123
Query: 417 CDCPGLVFPSK 427
D PG++ +K
Sbjct: 124 LDLPGIIDGAK 134
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT---KHFQTIFLTDNIRLCDCPGL 422
I +G PNVGKS++ NA+ G V + PG T K + + + ++ D PG+
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT---KHFQTIFLTDNIRLCDCPGL 422
I +G PNVGKS++ NA+ G V + PG T K + + + ++ D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT---KHFQTIFLTDNIRLCDCPGL 422
I +G PNVGKS++ NA+ G V + PG T K + + + ++ D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT---KHFQTIFLTDNIRLCDCPG 421
++ + G PNVGK+SL NA+ G K V+ PG T K + I L D PG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 374 GQPNVGKSSLMNAI---MGRKVVSVSRTPGH----TKHFQTIFLTDNIRLCDCPGLVFPS 426
GQ VGKSSL+NAI +G + +S G T+H + I + + + D PG
Sbjct: 180 GQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGL-VADTPGFSSLE 238
Query: 427 KVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHP 469
+ L +FP +RE S+ ++ LH+K P
Sbjct: 239 FTDIEEEELGYTFP--DIREKSSSCKFRG-------CLHLKEP 272
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRK-------VVSVSRTPGHTKHFQTIFLTDN--IRLCD 418
LT+G +G PN GK++L N + G + V+V R G IF T + + L D
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEG-------IFATTDHQVTLVD 56
Query: 419 CPG 421
PG
Sbjct: 57 LPG 59
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT---KHFQTIFLTDNIRLCDCPGL 422
I +G PNVGKS++ NA+ G V + PG T K + + + ++ D PG+
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT---KHFQTIFLTDNIRLCDCPG 421
+ + G PNVGK+SL NA+ G K V+ PG T K + I L D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 367 VLTIGCVGQPNVGKSSLMNAI 387
+L +G VG PNVGKS+L NA+
Sbjct: 1 MLAVGIVGLPNVGKSTLFNAL 21
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 368 LTIGCVGQPNVGKSSLMNAI 387
L +G VG PNVGKS+L NA+
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 361 EKYKSG--VLTIGCVGQPNVGKSSLMNAIM------GRKVVSVSRTPGHTKHFQTIFLTD 412
E Y+ G V +GC NVGKS+ +N + V++ S PG T I L +
Sbjct: 155 EYYRGGKDVYVVGCT---NVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDE 211
Query: 413 NIRLCDCPGLV 423
L D PG++
Sbjct: 212 ESSLYDTPGII 222
>pdb|1G8M|A Chain A, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
pdb|1G8M|B Chain B, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
Length = 593
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 221 YVTGTLGKDMILV--MNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNNIEN 278
YVTGT+G+D LV + PA L A K + KLT + +S + R+N++
Sbjct: 495 YVTGTIGEDEDLVKWQAXFEEVPAQLTEAEKKQW---IAKLTAVSLSSDAFFPFRDNVDR 551
Query: 279 SNKKGLQ 285
+ + G+Q
Sbjct: 552 AKRIGVQ 558
>pdb|1THZ|A Chain A, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|1THZ|B Chain B, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|2B1G|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|C Chain C, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|D Chain D, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
Length = 593
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 221 YVTGTLGKDMILV--MNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNNIEN 278
YVTGT+G+D LV + PA L A K + KLT + +S + R+N++
Sbjct: 495 YVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQW---IAKLTAVSLSSDAFFPFRDNVDR 551
Query: 279 SNKKGLQ 285
+ + G+Q
Sbjct: 552 AKRIGVQ 558
>pdb|1M9N|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1M9N|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1OZ0|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor
Beta-dadf.
pdb|1OZ0|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor Beta-dadf
Length = 613
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 221 YVTGTLGKDMILV--MNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNNIEN 278
YVTGT+G+D LV + PA L A K + KLT + +S + R+N++
Sbjct: 515 YVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQW---IAKLTAVSLSSDAFFPFRDNVDR 571
Query: 279 SNKKGLQ 285
+ + G+Q
Sbjct: 572 AKRIGVQ 578
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKV-------VSVSRTPGHTKHFQTIFLTDNIRLCDCPGL 422
I +G PN GK+SL N I G VSV R G K ++ + D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKK------NKDLEIQDLPGI 59
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT---DNIRLCDCPG 421
++ + G PNVGK+SL NA+ G K V+ PG T + T I L D PG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 361 EKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF 405
E+ +G ++I GQ VGKSSL+NA++G + ++ T HF
Sbjct: 155 EEALTGRISI-FAGQSGVGKSSLLNALLGLQNEILTNTAARLYHF 198
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTDN----IRLCDCPGLVF 424
I G+ N GKS+ +N + +K ++ S+TPG T+H + L D PG +
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91
Query: 425 PSKVP 429
++VP
Sbjct: 92 -AEVP 95
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN--IRLCDCPGL 422
I +G PN GK+SL N I G V PG T ++ + N + + D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGI 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN--IRLCDCPGL 422
I +G PN GK+SL N I G V PG T ++ + N + + D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN--IRLCDCPGL 422
I +G PN GK+SL N I G V PG T ++ + N + + D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGI 59
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 498 YDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPL 557
YD YR NE+ + + C P + LS Q+ +++H +ID + + + +E K L
Sbjct: 123 YDMYRLMNEVDDLLQQVLDC---QPAESLSYQQAFQRHLEIDPLSADKTQLREAAAKLDL 179
Query: 558 VSVSDDE 564
+++D E
Sbjct: 180 SNIADTE 186
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 369 TIGCVGQPNVGKSSLMNAIMG--RKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLV 423
+IG VG N GK+SL N++ G +KV + T K + I L D G +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK-----HFQTIFLTDNIRLCDCPGLV 423
TI G PNVGKSS MN I+ R V V TK HF + ++ D PGL+
Sbjct: 31 TIILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLL 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,333,667
Number of Sequences: 62578
Number of extensions: 635331
Number of successful extensions: 1537
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 70
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)