Query psy3589
Match_columns 604
No_of_seqs 758 out of 3147
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:28:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1424|consensus 100.0 2.5E-79 5.4E-84 642.2 28.3 425 85-546 62-499 (562)
2 KOG2423|consensus 100.0 5.3E-35 1.2E-39 297.7 23.0 316 131-528 139-465 (572)
3 KOG2484|consensus 100.0 4.3E-33 9.4E-38 286.1 22.9 269 187-524 136-406 (435)
4 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.8E-31 3.8E-36 276.3 28.2 264 178-520 4-277 (287)
5 TIGR03596 GTPase_YlqF ribosome 100.0 3.8E-31 8.3E-36 272.4 28.5 263 178-519 1-273 (276)
6 COG1161 Predicted GTPases [Gen 100.0 2.4E-30 5.1E-35 271.2 25.0 275 176-523 12-297 (322)
7 cd01858 NGP_1 NGP-1. Autoanti 99.9 1.9E-25 4.1E-30 210.8 17.1 156 190-422 1-157 (157)
8 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 1.1E-23 2.5E-28 195.2 17.3 140 187-425 1-141 (141)
9 cd01856 YlqF YlqF. Proteins o 99.9 3.4E-22 7.3E-27 191.5 19.5 170 180-423 1-171 (171)
10 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.8E-23 6.1E-28 207.3 12.2 162 368-570 31-205 (254)
11 cd04178 Nucleostemin_like Nucl 99.9 2.3E-22 5.1E-27 192.5 15.8 164 199-422 1-172 (172)
12 COG1126 GlnQ ABC-type polar am 99.9 1.6E-23 3.5E-28 201.1 7.4 167 368-571 29-203 (240)
13 COG1116 TauB ABC-type nitrate/ 99.9 3.4E-23 7.4E-28 204.2 9.2 165 369-571 31-198 (248)
14 COG1120 FepC ABC-type cobalami 99.9 6.3E-23 1.4E-27 205.7 10.3 179 368-583 29-222 (258)
15 cd01859 MJ1464 MJ1464. This f 99.9 1.8E-21 3.9E-26 183.3 18.1 155 187-422 1-156 (156)
16 cd01849 YlqF_related_GTPase Yl 99.9 4.6E-21 1E-25 180.6 16.9 154 199-422 1-155 (155)
17 COG1136 SalX ABC-type antimicr 99.9 5.3E-22 1.2E-26 195.4 9.0 170 369-573 33-212 (226)
18 COG1125 OpuBA ABC-type proline 99.8 2.2E-21 4.8E-26 190.0 8.6 169 369-571 29-203 (309)
19 COG2884 FtsE Predicted ATPase 99.8 3E-21 6.4E-26 181.7 8.5 167 369-570 30-203 (223)
20 COG1124 DppF ABC-type dipeptid 99.8 1.2E-20 2.6E-25 184.8 11.6 182 368-585 34-227 (252)
21 COG1135 AbcC ABC-type metal io 99.8 3.2E-21 6.9E-26 194.2 6.7 179 369-582 34-224 (339)
22 COG4555 NatA ABC-type Na+ tran 99.8 1.1E-20 2.4E-25 179.3 9.4 178 368-581 29-214 (245)
23 PRK12289 GTPase RsgA; Reviewed 99.8 1.5E-19 3.3E-24 191.1 16.4 177 195-470 87-274 (352)
24 cd01855 YqeH YqeH. YqeH is an 99.8 2E-19 4.2E-24 175.1 16.0 162 177-422 14-190 (190)
25 COG1131 CcmA ABC-type multidru 99.8 1.8E-20 3.8E-25 194.5 9.1 178 368-581 32-218 (293)
26 TIGR00960 3a0501s02 Type II (G 99.8 2.1E-20 4.7E-25 185.5 9.2 167 368-570 30-204 (216)
27 COG3840 ThiQ ABC-type thiamine 99.8 4.7E-20 1E-24 172.4 10.4 167 368-571 26-197 (231)
28 cd03261 ABC_Org_Solvent_Resist 99.8 3.6E-20 7.9E-25 186.3 9.4 175 368-579 27-216 (235)
29 COG0488 Uup ATPase components 99.8 4.1E-20 8.8E-25 204.3 10.1 63 493-570 154-216 (530)
30 TIGR01188 drrA daunorubicin re 99.8 4.4E-20 9.5E-25 192.8 9.5 167 368-570 20-190 (302)
31 cd03225 ABC_cobalt_CbiO_domain 99.8 6.3E-20 1.4E-24 181.4 9.9 166 368-570 28-200 (211)
32 PRK13537 nodulation ABC transp 99.8 4.8E-20 1E-24 192.7 9.3 166 369-570 35-204 (306)
33 COG1122 CbiO ABC-type cobalt t 99.8 6.5E-20 1.4E-24 183.4 9.8 167 368-570 31-205 (235)
34 COG1127 Ttg2A ABC-type transpo 99.8 1.9E-20 4E-25 182.7 5.7 178 369-580 36-226 (263)
35 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 6.8E-20 1.5E-24 182.1 9.5 165 368-568 31-205 (218)
36 PRK13536 nodulation factor exp 99.8 5.6E-20 1.2E-24 194.5 9.3 167 368-570 68-238 (340)
37 COG3839 MalK ABC-type sugar tr 99.8 5.9E-20 1.3E-24 191.1 9.2 162 369-570 31-200 (338)
38 cd03226 ABC_cobalt_CbiO_domain 99.8 8.3E-20 1.8E-24 179.9 9.8 164 368-570 27-192 (205)
39 TIGR02673 FtsE cell division A 99.8 9.2E-20 2E-24 180.6 9.8 167 368-570 29-203 (214)
40 cd03235 ABC_Metallic_Cations A 99.8 9.2E-20 2E-24 180.6 9.8 166 368-570 26-198 (213)
41 COG1118 CysA ABC-type sulfate/ 99.8 8.1E-20 1.8E-24 183.7 9.3 177 369-582 30-220 (345)
42 cd03292 ABC_FtsE_transporter F 99.8 8.6E-20 1.9E-24 180.8 9.3 167 368-570 28-202 (214)
43 cd03259 ABC_Carb_Solutes_like 99.8 8.5E-20 1.8E-24 180.8 9.1 167 368-570 27-197 (213)
44 cd03266 ABC_NatA_sodium_export 99.8 1E-19 2.2E-24 180.8 9.7 167 368-570 32-202 (218)
45 TIGR02211 LolD_lipo_ex lipopro 99.8 8.4E-20 1.8E-24 181.8 8.9 168 368-571 32-209 (221)
46 TIGR01184 ntrCD nitrate transp 99.8 1.3E-19 2.8E-24 181.9 10.3 175 368-580 12-195 (230)
47 TIGR01288 nodI ATP-binding ABC 99.8 1.1E-19 2.3E-24 190.0 9.8 167 368-570 31-201 (303)
48 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.4E-19 3E-24 180.2 10.2 165 368-570 31-198 (220)
49 cd03269 ABC_putative_ATPase Th 99.8 1.1E-19 2.3E-24 179.7 9.1 166 368-570 27-194 (210)
50 COG3842 PotA ABC-type spermidi 99.8 1.3E-19 2.7E-24 189.6 9.8 165 369-570 33-203 (352)
51 cd03262 ABC_HisP_GlnQ_permease 99.8 1.3E-19 2.8E-24 179.3 9.2 167 368-570 27-201 (213)
52 cd03218 ABC_YhbG The ABC trans 99.8 2.2E-19 4.9E-24 180.1 10.9 175 368-579 27-212 (232)
53 cd03219 ABC_Mj1267_LivG_branch 99.8 1.4E-19 3.1E-24 182.0 9.5 66 492-570 143-209 (236)
54 cd03268 ABC_BcrA_bacitracin_re 99.8 2.2E-19 4.7E-24 177.3 10.5 163 368-570 27-192 (208)
55 PRK10908 cell division protein 99.8 1.7E-19 3.7E-24 179.8 9.8 167 368-570 29-203 (222)
56 PRK11629 lolD lipoprotein tran 99.8 1.8E-19 3.8E-24 181.2 9.7 165 369-571 37-213 (233)
57 COG1117 PstB ABC-type phosphat 99.8 3.8E-19 8.2E-24 170.5 11.4 67 491-571 148-215 (253)
58 PRK11248 tauB taurine transpor 99.8 2.1E-19 4.6E-24 183.1 10.4 166 368-570 28-195 (255)
59 TIGR01166 cbiO cobalt transpor 99.8 1.7E-19 3.7E-24 175.5 9.3 161 369-567 20-190 (190)
60 cd03296 ABC_CysA_sulfate_impor 99.8 2.3E-19 5E-24 181.0 10.5 168 368-570 29-203 (239)
61 PRK13538 cytochrome c biogenes 99.8 2.6E-19 5.6E-24 176.3 10.6 165 368-571 28-196 (204)
62 TIGR02314 ABC_MetN D-methionin 99.8 1.6E-19 3.5E-24 190.9 9.6 167 368-570 32-207 (343)
63 cd03265 ABC_DrrA DrrA is the A 99.8 2.1E-19 4.5E-24 179.0 9.7 166 368-570 27-198 (220)
64 cd03264 ABC_drug_resistance_li 99.8 2.6E-19 5.7E-24 177.1 10.0 164 369-570 27-195 (211)
65 cd03224 ABC_TM1139_LivF_branch 99.8 3.5E-19 7.5E-24 177.5 10.9 66 492-570 132-198 (222)
66 TIGR00157 ribosome small subun 99.8 1.1E-18 2.4E-23 176.6 14.7 178 194-470 33-220 (245)
67 PRK11650 ugpC glycerol-3-phosp 99.8 1.5E-19 3.2E-24 192.5 8.7 164 369-570 32-201 (356)
68 PRK09536 btuD corrinoid ABC tr 99.8 2E-19 4.2E-24 193.7 9.7 176 368-580 30-219 (402)
69 cd03301 ABC_MalK_N The N-termi 99.8 2.5E-19 5.4E-24 177.4 9.6 167 368-570 27-197 (213)
70 COG4181 Predicted ABC-type tra 99.8 6.3E-19 1.4E-23 163.2 11.5 178 368-580 37-223 (228)
71 cd03258 ABC_MetN_methionine_tr 99.8 2.7E-19 5.7E-24 179.8 9.5 167 368-570 32-207 (233)
72 cd03297 ABC_ModC_molybdenum_tr 99.8 3.8E-19 8.3E-24 176.3 10.3 165 368-570 24-198 (214)
73 TIGR01186 proV glycine betaine 99.8 2.8E-19 6.1E-24 190.3 9.9 167 368-570 20-196 (363)
74 cd03294 ABC_Pro_Gly_Bertaine T 99.8 3.5E-19 7.5E-24 183.0 10.2 176 368-579 51-240 (269)
75 PRK11153 metN DL-methionine tr 99.8 2.8E-19 6E-24 189.8 9.6 167 368-570 32-207 (343)
76 PRK11831 putative ABC transpor 99.8 3.4E-19 7.4E-24 183.0 9.9 166 368-570 34-210 (269)
77 TIGR03740 galliderm_ABC gallid 99.8 6.1E-19 1.3E-23 176.0 11.4 173 368-580 27-204 (223)
78 PRK10584 putative ABC transpor 99.8 3.3E-19 7.2E-24 178.5 9.5 166 368-571 37-214 (228)
79 PRK10895 lipopolysaccharide AB 99.8 5.1E-19 1.1E-23 178.7 10.4 176 368-580 30-217 (241)
80 PRK11264 putative amino-acid A 99.8 4.8E-19 1E-23 179.8 10.1 76 492-580 144-224 (250)
81 TIGR03608 L_ocin_972_ABC putat 99.8 5.5E-19 1.2E-23 174.0 10.2 165 368-568 25-198 (206)
82 cd03257 ABC_NikE_OppD_transpor 99.8 5.9E-19 1.3E-23 176.4 10.6 169 368-570 32-212 (228)
83 PRK13543 cytochrome c biogenes 99.8 7E-19 1.5E-23 174.6 11.0 164 368-571 38-204 (214)
84 PRK13541 cytochrome c biogenes 99.8 4.9E-19 1.1E-23 173.1 9.7 162 368-570 27-189 (195)
85 cd01854 YjeQ_engC YjeQ/EngC. 99.8 1.8E-18 3.9E-23 179.1 14.3 179 194-470 75-262 (287)
86 PRK13638 cbiO cobalt transport 99.8 5.1E-19 1.1E-23 181.9 10.1 166 368-570 28-202 (271)
87 cd03260 ABC_PstB_phosphate_tra 99.8 3.6E-19 7.9E-24 178.1 8.7 65 492-570 141-206 (227)
88 cd03256 ABC_PhnC_transporter A 99.8 6E-19 1.3E-23 178.0 10.2 66 492-570 144-211 (241)
89 PRK13637 cbiO cobalt transport 99.8 3.9E-19 8.5E-24 184.3 9.0 177 368-580 34-225 (287)
90 cd03298 ABC_ThiQ_thiamine_tran 99.8 7.8E-19 1.7E-23 173.7 10.7 166 368-570 25-195 (211)
91 PRK09493 glnQ glutamine ABC tr 99.8 5E-19 1.1E-23 178.6 9.5 176 368-580 28-216 (240)
92 COG3638 ABC-type phosphate/pho 99.8 4.3E-19 9.3E-24 172.8 8.4 183 368-584 31-232 (258)
93 PRK13539 cytochrome c biogenes 99.8 8.7E-19 1.9E-23 173.0 10.8 170 368-578 29-200 (207)
94 PRK11000 maltose/maltodextrin 99.8 4E-19 8.7E-24 190.3 9.1 165 368-570 30-200 (369)
95 TIGR03258 PhnT 2-aminoethylpho 99.8 3.7E-19 8E-24 189.6 8.6 166 369-570 33-205 (362)
96 PRK13647 cbiO cobalt transport 99.8 5E-19 1.1E-23 182.3 9.2 175 368-580 32-218 (274)
97 cd03237 ABC_RNaseL_inhibitor_d 99.8 1.1E-18 2.4E-23 176.9 11.5 155 368-570 26-182 (246)
98 TIGR03522 GldA_ABC_ATP gliding 99.8 7E-19 1.5E-23 183.6 10.3 166 368-570 29-198 (301)
99 cd03263 ABC_subfamily_A The AB 99.8 7.9E-19 1.7E-23 174.7 9.9 165 369-570 30-198 (220)
100 PRK11432 fbpC ferric transport 99.8 5.9E-19 1.3E-23 187.5 9.5 164 369-570 34-203 (351)
101 PRK11247 ssuB aliphatic sulfon 99.8 8.5E-19 1.8E-23 178.8 10.4 160 368-570 39-200 (257)
102 TIGR02315 ABC_phnC phosphonate 99.8 5.5E-19 1.2E-23 178.5 8.7 175 368-579 29-225 (243)
103 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 8.7E-19 1.9E-23 176.5 10.1 175 368-578 28-210 (236)
104 PRK10851 sulfate/thiosulfate t 99.8 5.8E-19 1.3E-23 187.7 9.2 165 369-570 30-203 (353)
105 COG0488 Uup ATPase components 99.8 1.2E-18 2.7E-23 192.6 12.0 156 366-571 347-503 (530)
106 COG1160 Predicted GTPases [Gen 99.8 5.9E-18 1.3E-22 179.3 16.5 170 182-426 68-240 (444)
107 PRK11124 artP arginine transpo 99.8 9.3E-19 2E-23 176.9 10.1 176 368-579 29-220 (242)
108 cd03231 ABC_CcmA_heme_exporter 99.8 1.1E-18 2.4E-23 171.5 10.3 161 368-570 27-191 (201)
109 TIGR03265 PhnT2 putative 2-ami 99.8 4.9E-19 1.1E-23 188.3 8.3 165 368-570 31-201 (353)
110 PRK15056 manganese/iron transp 99.8 9.4E-19 2E-23 180.1 10.2 168 368-570 34-208 (272)
111 TIGR03771 anch_rpt_ABC anchore 99.8 1.3E-18 2.8E-23 173.8 10.9 167 368-570 7-179 (223)
112 PRK13644 cbiO cobalt transport 99.8 7.3E-19 1.6E-23 181.1 9.3 175 368-579 29-214 (274)
113 TIGR01277 thiQ thiamine ABC tr 99.8 1.5E-18 3.3E-23 172.0 11.1 166 368-570 25-195 (213)
114 PRK10070 glycine betaine trans 99.8 6.6E-19 1.4E-23 189.5 9.1 167 368-570 55-231 (400)
115 PRK09452 potA putrescine/sperm 99.8 7.1E-19 1.5E-23 188.2 9.2 164 369-570 42-211 (375)
116 cd03267 ABC_NatA_like Similar 99.8 1.5E-18 3.2E-23 174.9 11.0 166 368-570 48-220 (236)
117 cd03295 ABC_OpuCA_Osmoprotecti 99.8 8E-19 1.7E-23 177.4 9.0 177 369-579 29-215 (242)
118 PRK13641 cbiO cobalt transport 99.8 8.8E-19 1.9E-23 181.7 9.5 176 368-580 34-225 (287)
119 PRK13651 cobalt transporter AT 99.8 1.2E-18 2.6E-23 182.0 10.3 77 491-580 164-245 (305)
120 PRK10619 histidine/lysine/argi 99.8 1E-18 2.3E-23 178.2 9.4 77 491-580 151-232 (257)
121 TIGR02142 modC_ABC molybdenum 99.8 1.5E-18 3.2E-23 185.1 10.8 164 369-570 25-198 (354)
122 PRK10771 thiQ thiamine transpo 99.8 1.4E-18 3E-23 174.6 9.9 175 368-579 26-209 (232)
123 TIGR03005 ectoine_ehuA ectoine 99.8 1.5E-18 3.1E-23 176.6 10.2 75 492-579 146-226 (252)
124 PRK13548 hmuV hemin importer A 99.8 1.6E-18 3.5E-23 177.0 10.5 182 368-580 29-221 (258)
125 TIGR01189 ccmA heme ABC export 99.8 1.8E-18 3.9E-23 169.5 10.3 160 368-568 27-191 (198)
126 PRK11300 livG leucine/isoleuci 99.8 2E-18 4.4E-23 175.7 10.6 76 492-580 153-234 (255)
127 PRK15079 oligopeptide ABC tran 99.8 1.2E-18 2.6E-23 183.9 9.2 178 368-580 48-242 (331)
128 TIGR03410 urea_trans_UrtE urea 99.8 2.1E-18 4.5E-23 172.9 10.6 175 368-580 27-212 (230)
129 PRK13650 cbiO cobalt transport 99.8 1.1E-18 2.4E-23 180.2 8.7 175 368-580 34-220 (279)
130 PRK13649 cbiO cobalt transport 99.8 1.6E-18 3.4E-23 179.2 9.8 75 492-579 145-224 (280)
131 PRK13643 cbiO cobalt transport 99.8 9.7E-19 2.1E-23 181.4 8.2 176 368-580 33-224 (288)
132 TIGR02769 nickel_nikE nickel i 99.8 1.8E-18 3.9E-23 177.3 10.0 178 368-580 38-231 (265)
133 KOG2485|consensus 99.8 1.3E-17 2.8E-22 168.1 15.6 212 175-460 23-246 (335)
134 PRK00098 GTPase RsgA; Reviewed 99.8 6.9E-18 1.5E-22 175.7 14.3 143 193-424 76-228 (298)
135 PRK11144 modC molybdate transp 99.8 1.8E-18 3.8E-23 184.3 10.1 160 369-570 26-195 (352)
136 TIGR02770 nickel_nikD nickel i 99.8 1.8E-18 4E-23 173.5 9.6 179 368-579 13-205 (230)
137 PRK13635 cbiO cobalt transport 99.8 1.3E-18 2.9E-23 179.6 8.5 173 369-579 35-219 (279)
138 COG0411 LivG ABC-type branched 99.8 2.7E-19 5.8E-24 175.4 3.0 171 368-571 31-217 (250)
139 cd03229 ABC_Class3 This class 99.8 1.5E-18 3.1E-23 167.4 8.0 65 493-570 101-167 (178)
140 PRK13631 cbiO cobalt transport 99.8 1.9E-18 4.2E-23 181.5 9.7 77 491-580 175-256 (320)
141 PRK11308 dppF dipeptide transp 99.8 1.4E-18 2.9E-23 183.2 8.5 179 368-581 42-236 (327)
142 TIGR01978 sufC FeS assembly AT 99.8 2.9E-18 6.2E-23 173.2 10.3 65 493-570 145-210 (243)
143 TIGR03411 urea_trans_UrtD urea 99.8 2.6E-18 5.7E-23 173.5 10.0 75 492-580 143-222 (242)
144 PRK11614 livF leucine/isoleuci 99.7 4.2E-18 9.1E-23 171.6 11.4 77 491-580 136-217 (237)
145 cd03230 ABC_DR_subfamily_A Thi 99.7 2.2E-18 4.8E-23 165.4 8.7 65 493-570 96-161 (173)
146 PRK11607 potG putrescine trans 99.7 1.8E-18 3.9E-23 185.4 8.9 164 369-570 47-216 (377)
147 PRK15112 antimicrobial peptide 99.7 2.3E-18 5.1E-23 176.6 9.4 66 492-570 149-216 (267)
148 PRK11231 fecE iron-dicitrate t 99.7 2.4E-18 5.1E-23 175.4 9.2 66 492-570 138-204 (255)
149 PRK13648 cbiO cobalt transport 99.7 1.7E-18 3.8E-23 177.8 8.2 175 368-579 36-221 (269)
150 TIGR03873 F420-0_ABC_ATP propo 99.7 4E-18 8.7E-23 173.8 10.7 176 368-580 28-217 (256)
151 PRK13646 cbiO cobalt transport 99.7 2.4E-18 5.3E-23 178.3 9.1 77 491-580 144-226 (286)
152 COG4559 ABC-type hemin transpo 99.7 4.9E-18 1.1E-22 162.6 10.3 183 368-581 28-222 (259)
153 PRK13645 cbiO cobalt transport 99.7 2.3E-18 5.1E-23 178.7 9.0 75 492-579 150-230 (289)
154 PRK13634 cbiO cobalt transport 99.7 1.8E-18 3.8E-23 179.7 8.0 177 368-580 34-226 (290)
155 TIGR03415 ABC_choXWV_ATP choli 99.7 2.9E-18 6.2E-23 183.4 9.7 175 368-580 51-245 (382)
156 TIGR00972 3a0107s01c2 phosphat 99.7 2.8E-18 6.1E-23 174.0 9.1 75 492-580 144-223 (247)
157 PRK14250 phosphate ABC transpo 99.7 3.5E-18 7.6E-23 172.7 9.8 173 368-580 30-212 (241)
158 PRK13652 cbiO cobalt transport 99.7 3.1E-18 6.7E-23 176.7 9.6 175 368-580 31-218 (277)
159 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 3.4E-18 7.5E-23 170.9 9.6 66 492-570 142-208 (224)
160 cd03222 ABC_RNaseL_inhibitor T 99.7 3.2E-18 7E-23 164.6 9.0 111 368-570 26-138 (177)
161 PRK13540 cytochrome c biogenes 99.7 2.6E-18 5.6E-23 168.7 8.4 162 368-570 28-193 (200)
162 PRK10575 iron-hydroxamate tran 99.7 3.3E-18 7.2E-23 175.3 9.5 176 368-580 38-228 (265)
163 cd03215 ABC_Carb_Monos_II This 99.7 3.6E-18 7.9E-23 165.2 9.1 65 493-570 105-170 (182)
164 PRK09544 znuC high-affinity zi 99.7 8E-18 1.7E-22 171.2 12.0 155 368-570 31-187 (251)
165 PRK13636 cbiO cobalt transport 99.7 1.9E-18 4.1E-23 178.8 7.4 175 368-580 33-222 (283)
166 PRK13639 cbiO cobalt transport 99.7 3.7E-18 8E-23 176.0 9.4 175 368-580 29-217 (275)
167 PRK10253 iron-enterobactin tra 99.7 4.3E-18 9.3E-23 174.5 9.9 176 368-580 34-224 (265)
168 TIGR02324 CP_lyasePhnL phospho 99.7 4.8E-18 1E-22 169.6 9.9 66 492-570 149-215 (224)
169 PRK15093 antimicrobial peptide 99.7 2.6E-18 5.6E-23 181.5 8.4 76 492-580 158-239 (330)
170 cd03246 ABCC_Protease_Secretio 99.7 2.8E-18 6.1E-23 164.6 7.9 65 493-570 97-162 (173)
171 cd03214 ABC_Iron-Siderophores_ 99.7 1.1E-18 2.5E-23 168.4 5.2 137 368-570 26-164 (180)
172 COG4152 ABC-type uncharacteriz 99.7 2.1E-18 4.6E-23 168.2 7.0 161 368-570 29-196 (300)
173 PRK13642 cbiO cobalt transport 99.7 2.6E-18 5.5E-23 177.3 8.0 175 368-580 34-220 (277)
174 PRK13633 cobalt transporter AT 99.7 3.4E-18 7.5E-23 176.6 8.9 175 368-580 37-224 (280)
175 TIGR02982 heterocyst_DevA ABC 99.7 3.5E-18 7.6E-23 170.2 8.6 165 368-567 32-205 (220)
176 COG1123 ATPase components of v 99.7 3.7E-18 8.1E-23 185.9 9.3 179 368-582 318-512 (539)
177 PRK13632 cbiO cobalt transport 99.7 3.2E-18 6.9E-23 176.0 8.4 175 368-579 36-221 (271)
178 TIGR01187 potA spermidine/putr 99.7 2.4E-18 5.2E-23 181.4 7.6 163 372-570 1-167 (325)
179 PRK11701 phnK phosphonate C-P 99.7 6.1E-18 1.3E-22 172.6 10.2 67 491-570 150-218 (258)
180 PRK10762 D-ribose transporter 99.7 2.8E-18 6.2E-23 191.3 8.4 176 368-580 31-221 (501)
181 PRK10247 putative ABC transpor 99.7 5.6E-18 1.2E-22 169.5 9.5 165 368-570 34-204 (225)
182 PRK13640 cbiO cobalt transport 99.7 3.5E-18 7.6E-23 176.7 8.2 76 492-580 143-223 (282)
183 cd03216 ABC_Carb_Monos_I This 99.7 4.5E-18 9.8E-23 161.7 8.3 65 493-570 83-148 (163)
184 PRK11022 dppD dipeptide transp 99.7 4.1E-18 8.8E-23 179.6 8.7 77 492-581 153-235 (326)
185 TIGR02323 CP_lyasePhnK phospho 99.7 8.2E-18 1.8E-22 171.1 10.7 66 492-570 148-215 (253)
186 COG4598 HisP ABC-type histidin 99.7 8.7E-18 1.9E-22 156.8 9.7 186 369-582 34-234 (256)
187 COG4988 CydD ABC-type transpor 99.7 6.3E-18 1.4E-22 183.5 10.1 176 366-574 346-525 (559)
188 cd03300 ABC_PotA_N PotA is an 99.7 7.2E-18 1.6E-22 169.4 9.7 167 368-570 27-197 (232)
189 PRK12288 GTPase RsgA; Reviewed 99.7 3E-17 6.6E-22 173.6 14.9 178 194-470 117-306 (347)
190 COG1119 ModF ABC-type molybden 99.7 5.2E-18 1.1E-22 166.4 8.3 166 368-570 58-239 (257)
191 PRK15439 autoinducer 2 ABC tra 99.7 5.1E-18 1.1E-22 189.6 9.3 163 368-570 38-206 (510)
192 COG0410 LivF ABC-type branched 99.7 1E-17 2.2E-22 163.1 10.1 167 369-571 31-204 (237)
193 PRK14247 phosphate ABC transpo 99.7 7E-18 1.5E-22 171.3 9.4 76 491-580 145-225 (250)
194 PRK10418 nikD nickel transport 99.7 9.2E-18 2E-22 171.0 10.3 178 368-580 30-221 (254)
195 cd03252 ABCC_Hemolysin The ABC 99.7 9.6E-18 2.1E-22 168.9 10.3 179 368-579 29-215 (237)
196 cd03299 ABC_ModC_like Archeal 99.7 9E-18 2E-22 169.0 10.0 174 368-579 26-209 (235)
197 PRK13549 xylose transporter AT 99.7 4.6E-18 1E-22 189.8 8.6 176 368-580 32-223 (506)
198 PRK14242 phosphate transporter 99.7 7.5E-18 1.6E-22 171.4 9.4 75 492-580 149-228 (253)
199 PRK03695 vitamin B12-transport 99.7 8.8E-18 1.9E-22 170.5 9.8 83 492-580 126-213 (248)
200 TIGR00968 3a0106s01 sulfate AB 99.7 8.6E-18 1.9E-22 169.4 9.5 176 368-579 27-210 (237)
201 cd03254 ABCC_Glucan_exporter_l 99.7 5.8E-18 1.3E-22 169.5 8.2 170 369-571 31-205 (229)
202 COG4525 TauB ABC-type taurine 99.7 6.1E-18 1.3E-22 159.9 7.7 162 369-570 33-199 (259)
203 PRK09473 oppD oligopeptide tra 99.7 4.4E-18 9.6E-23 179.5 7.7 76 492-580 161-242 (330)
204 PRK14241 phosphate transporter 99.7 1E-17 2.2E-22 171.0 10.0 66 491-570 147-213 (258)
205 PRK13796 GTPase YqeH; Provisio 99.7 9.4E-17 2E-21 171.6 17.7 152 189-425 60-223 (365)
206 COG1137 YhbG ABC-type (unclass 99.7 7.7E-19 1.7E-23 166.6 1.4 179 369-582 32-221 (243)
207 PRK14273 phosphate ABC transpo 99.7 9.9E-18 2.1E-22 170.7 9.6 65 492-570 150-215 (254)
208 PRK10261 glutathione transport 99.7 7.8E-18 1.7E-22 192.2 9.9 178 368-580 351-544 (623)
209 PRK13546 teichoic acids export 99.7 2E-17 4.3E-22 169.4 11.8 75 492-579 143-222 (264)
210 PRK09700 D-allose transporter 99.7 5.5E-18 1.2E-22 189.4 8.3 166 368-570 32-211 (510)
211 PRK14268 phosphate ABC transpo 99.7 1E-17 2.2E-22 171.0 9.6 76 491-580 153-233 (258)
212 PRK09580 sufC cysteine desulfu 99.7 1.7E-17 3.7E-22 168.1 11.1 66 492-570 145-211 (248)
213 PRK09984 phosphonate/organopho 99.7 1.8E-17 4E-22 169.5 11.3 77 492-581 152-234 (262)
214 PRK13547 hmuV hemin importer A 99.7 1.6E-17 3.4E-22 170.9 10.8 86 491-580 144-235 (272)
215 cd03290 ABCC_SUR1_N The SUR do 99.7 2.1E-17 4.6E-22 164.3 11.4 170 368-570 28-208 (218)
216 PRK11288 araG L-arabinose tran 99.7 7.7E-18 1.7E-22 187.8 9.0 166 368-570 31-206 (501)
217 PRK10419 nikE nickel transport 99.7 1.5E-17 3.3E-22 170.7 10.5 169 368-570 39-218 (268)
218 PRK10982 galactose/methyl gala 99.7 7E-18 1.5E-22 187.7 8.6 166 368-570 25-200 (491)
219 cd03234 ABCG_White The White s 99.7 1.5E-17 3.2E-22 166.5 10.1 67 491-570 142-210 (226)
220 cd03245 ABCC_bacteriocin_expor 99.7 9E-18 2E-22 167.1 8.3 168 368-568 31-203 (220)
221 PRK14248 phosphate ABC transpo 99.7 1.2E-17 2.7E-22 171.4 9.3 75 492-580 164-243 (268)
222 PRK14251 phosphate ABC transpo 99.7 1.6E-17 3.4E-22 168.8 9.9 77 490-580 145-226 (251)
223 PRK14235 phosphate transporter 99.7 1.9E-17 4.1E-22 169.9 10.6 74 492-579 163-241 (267)
224 KOG0062|consensus 99.7 1.1E-17 2.5E-22 177.7 9.0 63 493-570 199-261 (582)
225 PRK14249 phosphate ABC transpo 99.7 2.2E-17 4.8E-22 167.8 10.9 75 492-580 147-226 (251)
226 COG4608 AppF ABC-type oligopep 99.7 1.1E-17 2.3E-22 167.4 8.2 150 368-585 40-195 (268)
227 PRK09700 D-allose transporter 99.7 1.2E-17 2.5E-22 186.8 9.5 76 492-580 409-489 (510)
228 PRK10636 putative ABC transpor 99.7 1.8E-17 3.9E-22 189.5 11.2 65 491-570 148-212 (638)
229 cd03251 ABCC_MsbA MsbA is an e 99.7 1.6E-17 3.5E-22 166.8 9.5 179 368-579 29-215 (234)
230 PRK14262 phosphate ABC transpo 99.7 1.9E-17 4E-22 168.2 10.0 76 491-580 145-225 (250)
231 PRK14256 phosphate ABC transpo 99.7 1.9E-17 4.2E-22 168.3 10.1 75 492-580 148-227 (252)
232 PRK10938 putative molybdenum t 99.7 1.6E-17 3.5E-22 184.8 10.3 66 492-570 135-201 (490)
233 PRK14240 phosphate transporter 99.7 1.8E-17 3.9E-22 168.3 9.7 75 492-580 146-225 (250)
234 PRK14272 phosphate ABC transpo 99.7 2.2E-17 4.8E-22 167.8 10.3 76 491-580 147-227 (252)
235 COG4175 ProV ABC-type proline/ 99.7 7.9E-18 1.7E-22 169.6 6.8 164 369-571 56-232 (386)
236 cd03223 ABCD_peroxisomal_ALDP 99.7 1.5E-17 3.2E-22 158.6 8.4 61 493-568 92-152 (166)
237 PRK10744 pstB phosphate transp 99.7 2.3E-17 4.9E-22 168.7 10.3 75 492-580 156-235 (260)
238 PRK11288 araG L-arabinose tran 99.7 1.1E-17 2.5E-22 186.5 8.7 76 492-580 396-476 (501)
239 PRK11147 ABC transporter ATPas 99.7 2.3E-17 5.1E-22 188.8 11.4 158 368-570 346-503 (635)
240 PRK14267 phosphate ABC transpo 99.7 1.7E-17 3.7E-22 168.8 9.2 76 491-580 148-228 (253)
241 cd03253 ABCC_ATM1_transporter 99.7 2.9E-17 6.3E-22 165.2 10.7 180 368-580 28-215 (236)
242 cd03213 ABCG_EPDR ABCG transpo 99.7 2.9E-17 6.3E-22 160.6 10.4 66 492-570 111-178 (194)
243 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 2.1E-17 4.6E-22 153.9 8.9 62 494-570 72-133 (144)
244 TIGR02633 xylG D-xylose ABC tr 99.7 1.1E-17 2.5E-22 186.4 8.4 76 492-580 141-221 (500)
245 PRK13545 tagH teichoic acids e 99.7 3.9E-17 8.4E-22 178.7 12.3 165 368-579 51-222 (549)
246 PRK14239 phosphate transporter 99.7 3E-17 6.4E-22 166.8 10.6 75 492-580 148-227 (252)
247 PRK14269 phosphate ABC transpo 99.7 2.3E-17 5.1E-22 167.2 9.8 75 492-580 142-221 (246)
248 PRK15134 microcin C ABC transp 99.7 1.6E-17 3.4E-22 186.6 9.4 66 492-570 156-223 (529)
249 PRK10636 putative ABC transpor 99.7 2.9E-17 6.4E-22 187.8 11.7 154 368-570 339-493 (638)
250 cd03228 ABCC_MRP_Like The MRP 99.7 1.3E-17 2.8E-22 159.7 7.4 64 493-570 97-161 (171)
251 PRK14275 phosphate ABC transpo 99.7 2.8E-17 6.1E-22 170.3 10.3 66 491-570 181-247 (286)
252 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 2.1E-17 4.6E-22 166.5 9.1 73 492-578 139-215 (238)
253 COG4148 ModC ABC-type molybdat 99.7 2.3E-17 5E-22 163.7 9.1 161 368-571 25-196 (352)
254 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.5E-17 3.2E-22 169.5 7.9 66 492-570 139-205 (255)
255 COG0444 DppD ABC-type dipeptid 99.7 1.1E-17 2.4E-22 170.7 6.9 78 493-583 154-237 (316)
256 cd03247 ABCC_cytochrome_bd The 99.7 9.8E-18 2.1E-22 161.6 6.2 66 492-571 98-164 (178)
257 CHL00131 ycf16 sulfate ABC tra 99.7 3.4E-17 7.3E-22 166.4 10.2 75 493-580 152-232 (252)
258 PRK14254 phosphate ABC transpo 99.7 4.2E-17 9.2E-22 168.9 11.1 66 491-570 179-245 (285)
259 COG4619 ABC-type uncharacteriz 99.7 1.7E-17 3.7E-22 153.4 7.1 173 368-580 30-214 (223)
260 cd03248 ABCC_TAP TAP, the Tran 99.7 1.6E-17 3.4E-22 166.2 7.4 66 492-571 150-216 (226)
261 PRK15439 autoinducer 2 ABC tra 99.7 1.7E-17 3.7E-22 185.4 8.6 76 492-580 403-483 (510)
262 PRK14270 phosphate ABC transpo 99.7 3.6E-17 7.9E-22 166.2 10.2 75 492-580 147-226 (251)
263 PRK13409 putative ATPase RIL; 99.7 3.3E-17 7.2E-22 185.1 11.0 153 368-570 366-520 (590)
264 TIGR02633 xylG D-xylose ABC tr 99.7 1.7E-17 3.6E-22 185.2 8.3 76 492-580 403-483 (500)
265 PRK14245 phosphate ABC transpo 99.7 3E-17 6.4E-22 166.7 9.5 75 492-580 146-225 (250)
266 PRK14259 phosphate ABC transpo 99.7 3E-17 6.5E-22 168.6 9.6 65 492-570 154-219 (269)
267 TIGR03269 met_CoM_red_A2 methy 99.7 3.1E-17 6.8E-22 183.8 10.5 67 491-570 167-235 (520)
268 cd03232 ABC_PDR_domain2 The pl 99.7 1.9E-17 4.2E-22 161.6 7.7 62 492-566 108-170 (192)
269 PRK14258 phosphate ABC transpo 99.7 2.9E-17 6.2E-22 168.0 9.3 67 491-570 149-217 (261)
270 PRK15064 ABC transporter ATP-b 99.7 3.7E-17 8.1E-22 183.6 11.1 64 492-570 155-218 (530)
271 PRK14271 phosphate ABC transpo 99.7 3.8E-17 8.2E-22 168.5 10.2 75 492-580 163-242 (276)
272 TIGR03597 GTPase_YqeH ribosome 99.7 3.2E-16 7E-21 167.3 17.5 157 184-425 49-217 (360)
273 PRK15064 ABC transporter ATP-b 99.7 5.3E-17 1.1E-21 182.4 12.0 165 368-579 346-514 (530)
274 cd03369 ABCC_NFT1 Domain 2 of 99.7 2.7E-17 5.8E-22 162.3 8.4 152 368-571 35-191 (207)
275 PRK13549 xylose transporter AT 99.7 3E-17 6.6E-22 183.3 9.6 77 492-581 405-486 (506)
276 PRK14274 phosphate ABC transpo 99.7 3.2E-17 7E-22 167.4 8.9 65 492-570 155-220 (259)
277 PRK14253 phosphate ABC transpo 99.7 4.1E-17 8.8E-22 165.6 9.3 75 492-580 145-224 (249)
278 PRK10261 glutathione transport 99.7 2.2E-17 4.8E-22 188.5 8.2 66 492-570 168-235 (623)
279 PRK10762 D-ribose transporter 99.7 2.6E-17 5.6E-22 183.6 8.6 77 492-581 395-476 (501)
280 PRK11147 ABC transporter ATPas 99.7 4.1E-17 9E-22 186.8 10.4 73 491-578 155-231 (635)
281 PRK14238 phosphate transporter 99.7 4.2E-17 9.1E-22 167.8 9.2 75 492-580 167-246 (271)
282 PRK14261 phosphate ABC transpo 99.7 6.6E-17 1.4E-21 164.5 10.5 76 491-580 148-228 (253)
283 PRK10982 galactose/methyl gala 99.7 3.2E-17 7E-22 182.4 8.9 75 492-579 391-470 (491)
284 cd03244 ABCC_MRP_domain2 Domai 99.7 6E-17 1.3E-21 161.3 9.9 169 369-571 32-205 (221)
285 cd03250 ABCC_MRP_domain1 Domai 99.7 7.2E-17 1.6E-21 158.9 10.3 162 368-571 32-195 (204)
286 PRK14263 phosphate ABC transpo 99.7 7.1E-17 1.5E-21 165.2 10.6 65 492-570 149-214 (261)
287 PRK14246 phosphate ABC transpo 99.7 6E-17 1.3E-21 165.3 10.0 74 493-580 154-232 (257)
288 PRK15134 microcin C ABC transp 99.7 4.7E-17 1E-21 182.7 10.0 76 492-580 425-506 (529)
289 PRK14265 phosphate ABC transpo 99.7 8.7E-17 1.9E-21 165.7 11.2 65 492-570 161-226 (274)
290 PRK13409 putative ATPase RIL; 99.7 3E-17 6.6E-22 185.5 8.3 66 491-570 211-277 (590)
291 PRK14266 phosphate ABC transpo 99.7 5.8E-17 1.3E-21 164.6 9.6 75 491-579 145-224 (250)
292 PRK14244 phosphate ABC transpo 99.7 5.7E-17 1.2E-21 164.8 9.4 75 492-580 149-228 (251)
293 PRK14255 phosphate ABC transpo 99.7 6.9E-17 1.5E-21 164.2 9.9 75 492-580 148-227 (252)
294 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 8.4E-17 1.8E-21 181.5 11.4 158 368-570 349-506 (552)
295 PRK14236 phosphate transporter 99.7 6.1E-17 1.3E-21 166.6 9.3 76 491-580 167-247 (272)
296 PRK14237 phosphate transporter 99.7 5.9E-17 1.3E-21 166.3 9.1 76 491-580 162-242 (267)
297 TIGR03269 met_CoM_red_A2 methy 99.7 5.2E-17 1.1E-21 182.0 9.4 66 492-570 427-494 (520)
298 PRK14260 phosphate ABC transpo 99.7 7.3E-17 1.6E-21 164.8 9.6 65 492-570 150-215 (259)
299 PRK14243 phosphate transporter 99.7 1E-16 2.2E-21 164.3 10.7 65 492-570 151-216 (264)
300 PRK11819 putative ABC transpor 99.7 9.6E-17 2.1E-21 181.2 11.4 158 368-570 351-508 (556)
301 COG4161 ArtP ABC-type arginine 99.7 6.9E-17 1.5E-21 148.3 8.3 182 368-581 29-222 (242)
302 COG1101 PhnK ABC-type uncharac 99.7 4.2E-17 9.1E-22 156.6 6.7 184 369-582 34-231 (263)
303 cd03217 ABC_FeS_Assembly ABC-t 99.7 5.7E-17 1.2E-21 159.3 7.9 64 493-569 105-169 (200)
304 PRK11819 putative ABC transpor 99.7 9.8E-17 2.1E-21 181.1 9.7 64 492-570 163-226 (556)
305 PLN03073 ABC transporter F fam 99.7 2.1E-16 4.5E-21 182.0 12.2 154 368-570 536-690 (718)
306 PRK14252 phosphate ABC transpo 99.7 1.4E-16 3E-21 163.3 9.5 65 492-570 161-226 (265)
307 COG2274 SunT ABC-type bacterio 99.7 4.5E-17 9.9E-22 185.7 6.2 182 367-581 499-688 (709)
308 COG4987 CydC ABC-type transpor 99.7 9.9E-17 2.1E-21 171.9 8.4 182 367-580 364-552 (573)
309 KOG0057|consensus 99.7 1E-16 2.2E-21 171.9 8.4 172 367-572 378-554 (591)
310 cd03289 ABCC_CFTR2 The CFTR su 99.7 1.1E-16 2.5E-21 164.6 8.3 178 368-580 31-216 (275)
311 cd03238 ABC_UvrA The excision 99.7 1.6E-16 3.5E-21 152.6 8.7 65 493-570 88-155 (176)
312 PRK14257 phosphate ABC transpo 99.7 1.7E-16 3.6E-21 167.5 9.6 75 492-580 225-304 (329)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.4E-16 3E-21 179.8 9.5 64 492-570 161-224 (552)
314 PRK10938 putative molybdenum t 99.7 1.5E-16 3.2E-21 177.1 9.3 66 491-569 400-467 (490)
315 KOG0927|consensus 99.7 1.6E-16 3.4E-21 169.9 8.8 157 367-570 416-572 (614)
316 COG4586 ABC-type uncharacteriz 99.7 3.4E-17 7.4E-22 162.2 3.5 82 499-581 145-238 (325)
317 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 9.4E-17 2E-21 185.7 7.4 179 367-580 479-664 (686)
318 PRK15177 Vi polysaccharide exp 99.7 5E-16 1.1E-20 154.1 11.6 74 493-580 105-183 (213)
319 cd03233 ABC_PDR_domain1 The pl 99.7 2.4E-16 5.3E-21 155.0 9.2 66 492-570 118-186 (202)
320 COG1123 ATPase components of v 99.7 1.2E-16 2.7E-21 174.1 7.7 77 493-582 155-237 (539)
321 PRK11174 cysteine/glutathione 99.7 1.7E-16 3.6E-21 180.6 8.9 180 367-579 376-562 (588)
322 COG1129 MglA ABC-type sugar tr 99.7 3.1E-16 6.7E-21 169.9 10.3 165 369-570 36-211 (500)
323 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 8.4E-17 1.8E-21 186.8 6.3 179 367-579 505-690 (710)
324 TIGR01257 rim_protein retinal- 99.6 2.4E-16 5.2E-21 194.9 10.4 167 368-570 1966-2136(2272)
325 TIGR02868 CydC thiol reductant 99.6 1.9E-16 4.1E-21 177.9 8.5 165 367-564 361-529 (529)
326 cd00267 ABC_ATPase ABC (ATP-bi 99.6 3E-16 6.5E-21 148.0 8.0 65 493-570 81-146 (157)
327 PRK14264 phosphate ABC transpo 99.6 5.8E-16 1.3E-20 161.9 10.9 76 491-580 199-280 (305)
328 cd03288 ABCC_SUR2 The SUR doma 99.6 3E-16 6.5E-21 160.1 8.4 178 368-579 48-233 (257)
329 PLN03211 ABC transporter G-25; 99.6 3.6E-16 7.9E-21 178.9 10.1 65 492-569 206-272 (659)
330 COG1162 Predicted GTPases [Gen 99.6 1.9E-15 4.1E-20 153.9 14.1 178 195-470 77-265 (301)
331 KOG0055|consensus 99.6 2.2E-16 4.8E-21 183.8 8.0 184 367-582 379-569 (1228)
332 COG4604 CeuD ABC-type enteroch 99.6 3E-16 6.5E-21 148.8 7.4 52 518-570 149-202 (252)
333 PRK11176 lipid transporter ATP 99.6 2.3E-16 5.1E-21 179.1 7.7 182 367-579 369-557 (582)
334 TIGR02857 CydD thiol reductant 99.6 3.5E-16 7.6E-21 175.7 9.0 173 367-572 348-525 (529)
335 cd03291 ABCC_CFTR1 The CFTR su 99.6 6.9E-16 1.5E-20 159.4 10.4 66 492-571 159-226 (282)
336 TIGR01257 rim_protein retinal- 99.6 4.4E-16 9.6E-21 192.6 10.2 164 369-570 958-1126(2272)
337 TIGR00954 3a01203 Peroxysomal 99.6 8.3E-16 1.8E-20 176.5 11.8 167 368-572 479-647 (659)
338 PRK10790 putative multidrug tr 99.6 3.1E-16 6.7E-21 178.5 7.8 181 367-580 367-554 (592)
339 KOG0066|consensus 99.6 5.3E-16 1.2E-20 161.3 8.6 149 368-570 614-767 (807)
340 COG4172 ABC-type uncharacteriz 99.6 7.3E-16 1.6E-20 159.7 9.3 182 367-585 313-512 (534)
341 TIGR01842 type_I_sec_PrtD type 99.6 6.1E-16 1.3E-20 174.3 9.5 173 367-571 344-521 (544)
342 PRK13657 cyclic beta-1,2-gluca 99.6 4.9E-16 1.1E-20 176.7 8.6 171 368-571 362-537 (588)
343 COG3845 ABC-type uncharacteriz 99.6 6E-16 1.3E-20 164.7 8.5 165 369-570 32-206 (501)
344 TIGR01192 chvA glucan exporter 99.6 6.7E-16 1.4E-20 175.4 9.2 172 367-571 361-537 (585)
345 PLN03073 ABC transporter F fam 99.6 4.5E-16 9.8E-21 179.2 7.4 64 492-570 344-407 (718)
346 TIGR00958 3a01208 Conjugate Tr 99.6 4.8E-16 1E-20 180.3 7.5 179 367-579 507-692 (711)
347 PRK10535 macrolide transporter 99.6 9.2E-16 2E-20 175.9 9.6 180 368-583 35-226 (648)
348 PRK11160 cysteine/glutathione 99.6 9.6E-16 2.1E-20 173.7 9.6 178 368-579 367-552 (574)
349 TIGR02203 MsbA_lipidA lipid A 99.6 7.2E-16 1.6E-20 174.7 8.4 175 367-573 358-537 (571)
350 TIGR03375 type_I_sec_LssB type 99.6 6.6E-16 1.4E-20 178.9 7.4 181 367-579 491-678 (694)
351 PRK01889 GTPase RsgA; Reviewed 99.6 6.4E-15 1.4E-19 156.9 14.0 144 194-426 109-261 (356)
352 PRK10789 putative multidrug tr 99.6 1E-15 2.2E-20 173.4 7.8 173 367-572 341-518 (569)
353 TIGR01193 bacteriocin_ABC ABC- 99.6 7.6E-16 1.6E-20 178.8 6.7 180 367-579 500-687 (708)
354 PRK10522 multidrug transporter 99.6 8.6E-16 1.9E-20 173.2 6.6 172 367-580 349-529 (547)
355 TIGR02204 MsbA_rel ABC transpo 99.6 2.1E-15 4.6E-20 171.1 9.1 179 368-579 367-553 (576)
356 TIGR01846 type_I_sec_HlyB type 99.6 1.9E-15 4.2E-20 175.0 8.0 180 368-580 484-671 (694)
357 KOG0058|consensus 99.6 2.4E-15 5.1E-20 166.6 7.6 172 368-571 495-670 (716)
358 COG4133 CcmA ABC-type transpor 99.6 4.1E-15 9E-20 140.4 7.7 160 369-567 30-193 (209)
359 TIGR01194 cyc_pep_trnsptr cycl 99.6 3E-15 6.6E-20 169.0 8.1 166 367-572 368-539 (555)
360 TIGR03594 GTPase_EngA ribosome 99.6 4.6E-14 9.9E-19 154.5 16.7 165 185-425 66-233 (429)
361 COG1132 MdlB ABC-type multidru 99.6 4.1E-15 8.9E-20 168.5 8.3 181 367-579 355-542 (567)
362 PRK00093 GTP-binding protein D 99.6 6.8E-14 1.5E-18 153.5 17.1 163 187-426 70-235 (435)
363 PRK03003 GTP-binding protein D 99.6 5.1E-14 1.1E-18 155.9 16.1 162 186-423 106-270 (472)
364 COG1134 TagH ABC-type polysacc 99.5 6.3E-15 1.4E-19 145.0 7.3 76 504-580 141-227 (249)
365 cd03270 ABC_UvrA_I The excisio 99.5 1.6E-14 3.4E-19 144.7 10.3 66 492-570 137-205 (226)
366 PTZ00265 multidrug resistance 99.5 4.4E-15 9.6E-20 182.7 7.5 68 493-573 1359-1428(1466)
367 COG4107 PhnK ABC-type phosphon 99.5 1.2E-14 2.7E-19 135.1 8.5 66 493-571 152-219 (258)
368 cd03278 ABC_SMC_barmotin Barmo 99.5 8.2E-15 1.8E-19 143.7 7.8 68 492-569 113-181 (197)
369 PTZ00265 multidrug resistance 99.5 1E-14 2.2E-19 179.5 8.6 67 492-571 579-647 (1466)
370 KOG0927|consensus 99.5 1.8E-14 4E-19 154.2 9.2 67 501-570 212-285 (614)
371 COG4136 ABC-type uncharacteriz 99.5 1.7E-14 3.6E-19 131.3 7.4 64 492-568 134-199 (213)
372 TIGR00956 3a01205 Pleiotropic 99.5 1.4E-14 3E-19 178.1 8.9 164 368-566 790-964 (1394)
373 COG0396 sufC Cysteine desulfur 99.5 1.6E-14 3.5E-19 140.5 7.3 74 494-580 146-225 (251)
374 PLN03140 ABC transporter G fam 99.5 2E-14 4.4E-19 176.3 9.5 61 492-565 1019-1080(1470)
375 PRK09518 bifunctional cytidyla 99.5 2.1E-13 4.5E-18 158.0 17.1 164 186-423 343-509 (712)
376 TIGR00955 3a01204 The Eye Pigm 99.5 2.5E-14 5.3E-19 163.4 9.2 64 493-569 167-232 (617)
377 COG4674 Uncharacterized ABC-ty 99.5 3.4E-15 7.4E-20 141.4 1.3 62 518-581 161-227 (249)
378 PLN03232 ABC transporter C fam 99.5 1.4E-14 3E-19 179.5 7.0 180 367-580 1262-1449(1495)
379 PLN03130 ABC transporter C fam 99.5 1.9E-14 4.1E-19 178.8 8.0 180 367-580 1265-1452(1622)
380 TIGR00957 MRP_assoc_pro multi 99.5 3.5E-14 7.6E-19 176.3 9.8 179 367-579 1312-1498(1522)
381 COG4618 ArpD ABC-type protease 99.5 8.6E-14 1.9E-18 148.3 10.7 166 368-571 363-539 (580)
382 PTZ00243 ABC transporter; Prov 99.5 3.8E-14 8.3E-19 175.7 8.8 180 367-580 1336-1524(1560)
383 cd03279 ABC_sbcCD SbcCD and ot 99.5 3.1E-14 6.8E-19 141.2 5.9 71 492-570 123-199 (213)
384 KOG0055|consensus 99.5 4.2E-14 9.1E-19 165.0 7.7 183 366-579 1015-1203(1228)
385 KOG0062|consensus 99.5 7.5E-14 1.6E-18 148.8 7.4 63 493-570 483-545 (582)
386 TIGR01271 CFTR_protein cystic 99.5 9.1E-14 2E-18 172.2 8.8 171 367-572 1245-1420(1490)
387 COG4138 BtuD ABC-type cobalami 99.5 3.5E-14 7.5E-19 132.3 3.8 46 523-569 151-197 (248)
388 TIGR01271 CFTR_protein cystic 99.4 3E-13 6.4E-18 167.6 12.5 160 368-570 453-614 (1490)
389 cd03273 ABC_SMC2_euk Eukaryoti 99.4 1.5E-13 3.2E-18 139.9 8.2 69 492-570 166-235 (251)
390 KOG0061|consensus 99.4 1.8E-13 3.8E-18 155.4 8.8 167 369-565 58-231 (613)
391 TIGR00956 3a01205 Pleiotropic 99.4 1.7E-13 3.6E-18 168.6 8.6 65 493-570 210-277 (1394)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.4 4.8E-13 1E-17 135.8 10.6 69 493-570 156-225 (247)
393 cd03272 ABC_SMC3_euk Eukaryoti 99.4 8.1E-14 1.8E-18 140.8 4.9 68 492-570 158-226 (243)
394 COG4172 ABC-type uncharacteriz 99.4 4.3E-13 9.3E-18 139.4 9.8 66 493-571 158-225 (534)
395 cd03240 ABC_Rad50 The catalyti 99.4 2.2E-13 4.7E-18 134.3 7.3 67 492-571 115-190 (204)
396 PTZ00243 ABC transporter; Prov 99.4 6.1E-13 1.3E-17 165.2 12.4 160 368-570 687-848 (1560)
397 PLN03232 ABC transporter C fam 99.4 4.7E-13 1E-17 166.1 11.0 162 368-571 644-807 (1495)
398 COG4167 SapF ABC-type antimicr 99.4 5.5E-13 1.2E-17 125.2 8.7 172 367-571 39-217 (267)
399 PLN03130 ABC transporter C fam 99.4 4E-13 8.7E-18 167.1 8.6 160 368-571 644-807 (1622)
400 COG1245 Predicted ATPase, RNas 99.4 1.2E-12 2.6E-17 137.8 10.7 153 368-570 368-522 (591)
401 TIGR00957 MRP_assoc_pro multi 99.4 7.9E-13 1.7E-17 164.3 11.1 161 368-570 665-828 (1522)
402 KOG0059|consensus 99.4 5.3E-13 1.1E-17 157.8 8.7 64 494-570 700-764 (885)
403 PLN03140 ABC transporter G fam 99.4 4.9E-13 1.1E-17 164.3 8.5 65 493-570 337-404 (1470)
404 KOG0056|consensus 99.4 1.6E-13 3.4E-18 144.9 3.5 185 367-580 564-752 (790)
405 KOG0066|consensus 99.4 7.6E-13 1.6E-17 138.1 7.5 61 507-570 409-475 (807)
406 cd03271 ABC_UvrA_II The excisi 99.4 2.2E-12 4.8E-17 131.5 9.4 71 491-571 168-239 (261)
407 COG4178 ABC-type uncharacteriz 99.3 6.4E-12 1.4E-16 139.2 11.9 156 368-567 420-577 (604)
408 COG1245 Predicted ATPase, RNas 99.3 2.3E-12 5E-17 135.7 7.8 66 492-570 213-279 (591)
409 cd03274 ABC_SMC4_euk Eukaryoti 99.3 4.9E-13 1.1E-17 132.6 2.0 65 493-567 128-193 (212)
410 cd03276 ABC_SMC6_euk Eukaryoti 99.3 3E-12 6.5E-17 125.7 6.6 71 492-571 109-183 (198)
411 COG4778 PhnL ABC-type phosphon 99.3 4.9E-12 1.1E-16 117.6 7.4 65 493-570 153-218 (235)
412 PF00005 ABC_tran: ABC transpo 99.2 1.7E-12 3.6E-17 119.1 1.2 32 368-399 12-43 (137)
413 cd03280 ABC_MutS2 MutS2 homolo 99.2 1.4E-11 3E-16 121.1 6.2 49 521-570 107-157 (200)
414 COG4615 PvdE ABC-type sideroph 99.2 1E-10 2.3E-15 121.4 11.9 169 369-585 351-533 (546)
415 COG5265 ATM1 ABC-type transpor 99.2 1.3E-11 2.7E-16 129.4 4.1 171 367-580 289-477 (497)
416 KOG0065|consensus 99.2 4.6E-11 1E-15 140.0 9.1 47 518-565 943-991 (1391)
417 PF03193 DUF258: Protein of un 99.2 8.4E-11 1.8E-15 110.7 8.7 94 368-470 36-136 (161)
418 cd03227 ABC_Class2 ABC-type Cl 99.2 7.6E-11 1.6E-15 112.0 8.1 70 493-571 78-148 (162)
419 cd03239 ABC_SMC_head The struc 99.2 8.2E-11 1.8E-15 113.5 8.4 69 493-570 95-164 (178)
420 KOG0054|consensus 99.1 5.5E-11 1.2E-15 142.2 7.8 173 366-573 1165-1343(1381)
421 cd03283 ABC_MutS-like MutS-lik 99.1 8.1E-11 1.8E-15 115.6 7.3 49 521-570 104-154 (199)
422 cd03243 ABC_MutS_homologs The 99.1 5.5E-11 1.2E-15 117.0 5.8 50 521-571 107-158 (202)
423 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.3E-10 2.8E-15 115.3 7.2 69 493-570 127-198 (213)
424 PRK00635 excinuclease ABC subu 99.0 5E-10 1.1E-14 137.5 10.3 69 491-569 808-877 (1809)
425 KOG0054|consensus 99.0 5.5E-10 1.2E-14 133.8 9.8 162 368-571 548-710 (1381)
426 KOG0060|consensus 99.0 5.1E-10 1.1E-14 121.4 8.1 162 368-568 462-631 (659)
427 KOG0064|consensus 99.0 1.5E-09 3.4E-14 116.3 10.5 160 367-567 508-672 (728)
428 PRK00349 uvrA excinuclease ABC 99.0 2.3E-09 5E-14 126.3 11.7 66 492-570 830-899 (943)
429 TIGR00630 uvra excinuclease AB 99.0 2.2E-09 4.8E-14 126.2 11.3 70 492-571 828-898 (924)
430 COG1129 MglA ABC-type sugar tr 98.9 2.3E-09 5E-14 116.8 9.8 77 492-581 401-482 (500)
431 smart00534 MUTSac ATPase domai 98.9 3.6E-09 7.9E-14 102.7 6.8 48 521-569 77-127 (185)
432 KOG2355|consensus 98.9 3.1E-09 6.7E-14 101.9 5.9 65 493-570 148-214 (291)
433 COG1159 Era GTPase [General fu 98.8 2.2E-08 4.7E-13 101.8 12.1 103 183-314 71-174 (298)
434 PTZ00132 GTP-binding nuclear p 98.8 3.5E-08 7.6E-13 97.8 12.9 37 498-547 158-199 (215)
435 cd03281 ABC_MSH5_euk MutS5 hom 98.8 1.2E-08 2.6E-13 101.3 8.8 51 520-571 106-161 (213)
436 COG2401 ABC-type ATPase fused 98.8 2.2E-08 4.8E-13 104.9 9.8 71 487-570 502-574 (593)
437 cd03241 ABC_RecN RecN ATPase i 98.8 1E-08 2.3E-13 105.8 7.2 67 493-569 171-238 (276)
438 cd03282 ABC_MSH4_euk MutS4 hom 98.8 8.5E-09 1.9E-13 101.6 6.1 51 520-571 106-158 (204)
439 COG4170 SapD ABC-type antimicr 98.8 4.7E-08 1E-12 94.1 10.4 74 496-570 144-225 (330)
440 PF02421 FeoB_N: Ferrous iron 98.8 1.3E-08 2.9E-13 95.6 6.7 59 368-427 1-62 (156)
441 TIGR02858 spore_III_AA stage I 98.7 2E-08 4.4E-13 103.0 7.6 33 368-400 112-144 (270)
442 COG0178 UvrA Excinuclease ATPa 98.7 1.5E-07 3.2E-12 106.1 12.3 71 491-571 821-892 (935)
443 TIGR00436 era GTP-binding prot 98.6 2.8E-07 6.1E-12 94.9 12.5 99 185-313 67-165 (270)
444 TIGR01069 mutS2 MutS2 family p 98.6 3.2E-08 6.9E-13 115.2 6.0 47 521-568 401-449 (771)
445 PF01926 MMR_HSR1: 50S ribosom 98.6 7.5E-08 1.6E-12 85.7 6.8 57 369-425 1-60 (116)
446 cd03242 ABC_RecF RecF is a rec 98.6 1.6E-07 3.5E-12 96.7 9.3 69 494-570 185-254 (270)
447 COG1159 Era GTPase [General fu 98.6 7E-08 1.5E-12 98.1 6.3 60 368-427 7-69 (298)
448 COG3910 Predicted ATPase [Gene 98.6 2.2E-07 4.9E-12 88.2 9.2 45 521-566 145-190 (233)
449 COG0218 Predicted GTPase [Gene 98.6 1.2E-07 2.6E-12 91.6 7.3 62 366-427 23-85 (200)
450 cd03284 ABC_MutS1 MutS1 homolo 98.5 1.6E-07 3.5E-12 93.4 7.8 46 520-568 107-157 (216)
451 cd03285 ABC_MSH2_euk MutS2 hom 98.5 1.3E-07 2.7E-12 94.6 6.6 47 521-570 108-158 (222)
452 PRK00089 era GTPase Era; Revie 98.4 1.7E-06 3.6E-11 90.0 12.4 98 187-313 74-172 (292)
453 PF00009 GTP_EFTU: Elongation 98.4 1.1E-06 2.3E-11 85.4 10.3 98 186-312 82-187 (188)
454 PF02463 SMC_N: RecF/RecN/SMC 98.4 9.7E-08 2.1E-12 94.9 2.9 68 493-570 137-205 (220)
455 PRK15494 era GTPase Era; Provi 98.4 1.3E-06 2.7E-11 93.0 11.4 101 183-313 117-217 (339)
456 cd03287 ABC_MSH3_euk MutS3 hom 98.4 7.1E-07 1.5E-11 89.1 8.7 50 521-571 109-161 (222)
457 COG1160 Predicted GTPases [Gen 98.4 9.7E-07 2.1E-11 94.6 9.5 92 190-310 253-349 (444)
458 cd01894 EngA1 EngA1 subfamily. 98.4 2.7E-06 5.8E-11 78.7 11.1 77 186-267 65-141 (157)
459 cd01895 EngA2 EngA2 subfamily. 98.4 2.6E-06 5.6E-11 79.9 10.9 77 190-267 77-158 (174)
460 TIGR02729 Obg_CgtA Obg family 98.4 1.4E-06 3.1E-11 92.1 9.4 97 184-309 222-326 (329)
461 cd01898 Obg Obg subfamily. Th 98.4 1.1E-06 2.5E-11 82.8 7.8 81 187-267 68-154 (170)
462 COG0486 ThdF Predicted GTPase 98.3 6.1E-07 1.3E-11 96.4 6.3 60 366-425 216-278 (454)
463 KOG0063|consensus 98.3 1.5E-06 3.3E-11 91.7 8.9 66 492-570 456-523 (592)
464 PRK00349 uvrA excinuclease ABC 98.3 3.5E-07 7.5E-12 108.2 4.6 73 488-571 485-558 (943)
465 PRK00409 recombination and DNA 98.3 4.8E-07 1E-11 105.8 5.6 49 521-570 406-456 (782)
466 PRK15467 ethanolamine utilizat 98.3 4.2E-06 9.1E-11 79.0 10.8 92 187-310 54-145 (158)
467 KOG0063|consensus 98.3 1.6E-06 3.4E-11 91.6 8.2 65 493-570 214-279 (592)
468 PRK09866 hypothetical protein; 98.3 4.7E-06 1E-10 93.0 12.4 74 193-267 254-336 (741)
469 cd01888 eIF2_gamma eIF2-gamma 98.3 6E-06 1.3E-10 81.3 11.9 98 187-312 96-199 (203)
470 TIGR00630 uvra excinuclease AB 98.3 4.3E-07 9.3E-12 107.2 4.4 72 489-571 484-556 (924)
471 TIGR02528 EutP ethanolamine ut 98.3 4.4E-06 9.6E-11 76.6 10.0 75 188-267 53-128 (142)
472 COG3845 ABC-type uncharacteriz 98.3 7.5E-06 1.6E-10 88.4 13.0 81 492-585 403-488 (501)
473 cd03286 ABC_MSH6_euk MutS6 hom 98.3 2.1E-06 4.6E-11 85.5 7.9 50 521-571 108-160 (218)
474 PRK13695 putative NTPase; Prov 98.3 4.9E-07 1.1E-11 86.7 3.3 61 520-583 94-158 (174)
475 PF10662 PduV-EutP: Ethanolami 98.3 5.3E-06 1.1E-10 76.7 9.9 99 177-308 41-142 (143)
476 cd04163 Era Era subfamily. Er 98.3 6.8E-06 1.5E-10 76.2 10.8 75 192-267 77-152 (168)
477 cd01889 SelB_euk SelB subfamil 98.3 6.8E-06 1.5E-10 79.9 11.0 96 186-310 80-184 (192)
478 cd04171 SelB SelB subfamily. 98.2 7E-06 1.5E-10 76.6 10.5 77 191-267 68-149 (164)
479 COG0486 ThdF Predicted GTPase 98.2 3E-06 6.6E-11 91.1 8.8 92 186-312 285-376 (454)
480 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 1.6E-06 3.4E-11 84.8 6.0 59 368-426 1-63 (196)
481 PRK00454 engB GTP-binding prot 98.2 2.2E-06 4.7E-11 83.1 7.0 60 365-424 22-82 (196)
482 PF02421 FeoB_N: Ferrous iron 98.2 4.7E-07 1E-11 85.2 2.2 69 195-267 76-144 (156)
483 TIGR03598 GTPase_YsxC ribosome 98.2 2.6E-06 5.7E-11 81.8 7.3 60 365-424 16-76 (179)
484 PRK12296 obgE GTPase CgtA; Rev 98.2 6E-06 1.3E-10 91.3 10.7 95 186-310 225-338 (500)
485 PRK12299 obgE GTPase CgtA; Rev 98.2 5E-06 1.1E-10 88.1 9.3 98 184-310 223-326 (335)
486 TIGR00436 era GTP-binding prot 98.2 2.4E-06 5.2E-11 88.0 6.7 57 369-425 2-61 (270)
487 COG1084 Predicted GTPase [Gene 98.2 2.2E-06 4.8E-11 88.1 6.2 61 366-427 167-230 (346)
488 cd01853 Toc34_like Toc34-like 98.2 2.9E-06 6.4E-11 86.2 7.0 60 366-425 30-92 (249)
489 cd00881 GTP_translation_factor 98.2 1.5E-05 3.2E-10 76.3 11.0 90 193-311 81-186 (189)
490 PRK13768 GTPase; Provisional 98.2 1.2E-05 2.6E-10 82.0 10.8 111 175-314 105-249 (253)
491 PTZ00258 GTP-binding protein; 98.1 4E-06 8.7E-11 90.1 7.0 62 365-427 19-100 (390)
492 cd04164 trmE TrmE (MnmE, ThdF, 98.1 9.4E-06 2E-10 74.9 8.6 71 187-267 70-140 (157)
493 PRK12298 obgE GTPase CgtA; Rev 98.1 9.8E-06 2.1E-10 87.7 9.7 99 186-312 226-333 (390)
494 PRK12298 obgE GTPase CgtA; Rev 98.1 3.8E-06 8.3E-11 90.8 6.5 57 369-426 161-221 (390)
495 PRK00093 GTP-binding protein D 98.1 1.4E-05 2.9E-10 88.0 10.9 92 189-309 247-341 (435)
496 cd04165 GTPBP1_like GTPBP1-lik 98.1 1.7E-05 3.6E-10 79.5 10.5 60 187-247 97-158 (224)
497 cd00880 Era_like Era (E. coli 98.1 1.9E-05 4.2E-10 72.1 10.1 79 188-267 66-147 (163)
498 cd01876 YihA_EngB The YihA (En 98.1 4.7E-06 1E-10 77.6 6.1 56 370-425 2-58 (170)
499 cd01879 FeoB Ferrous iron tran 98.1 1.2E-05 2.7E-10 74.5 8.8 77 186-267 64-140 (158)
500 PRK00635 excinuclease ABC subu 98.1 2E-06 4.3E-11 106.6 4.2 67 489-568 473-542 (1809)
No 1
>KOG1424|consensus
Probab=100.00 E-value=2.5e-79 Score=642.17 Aligned_cols=425 Identities=39% Similarity=0.646 Sum_probs=331.4
Q ss_pred CCCCCCCccceeeecccCHHH-HHHHHHhcccccccccccccccCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy3589 85 GGAKSNPNRYVLQFHKESPAE-LKERKKRAYETLVPVDQKDLEHNLDDY--FLPELDFPKRPEWNFNMSIDQLDRREQDY 161 (604)
Q Consensus 85 ~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~p~rP~w~~~~t~~~l~~~E~~~ 161 (604)
+.+.+..++|.++|.+++..+ ++++-.++ . ..+...+...... +...|+|||||+|++.||+|||+++|+++
T Consensus 62 ~~ae~a~~~f~ae~~~~~~i~~~~~~~~~~-s----~~ee~r~~q~~ee~~~~~~L~iPRRP~W~~~~s~eeLd~~Ekea 136 (562)
T KOG1424|consen 62 GTAELAETEFTAEKSNETIIENEQRTGSLS-S----ATEEQRELQKQEEALNASRLDIPRRPPWTLEMSKEELDRQEKEA 136 (562)
T ss_pred hhhhhhhhhhhhhhccccccchhhcccccc-c----HHHHhhhhhhhhhhhhcccccccCCCCCCCCCCHHHHHHHHHHH
Confidence 456789999999999999998 55443332 2 2222222222222 34789999999999999999999999999
Q ss_pred HHHHHHHHHh--ccCCCCCCcchhhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhcc-CCCcEEEEEeCCC
Q psy3589 162 FRDYLSNIES--KFAWKDLSYFELNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGT-LGKDMILVMNKID 238 (604)
Q Consensus 162 f~~w~~~~~~--~~~~~~lt~fE~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~-~~K~~ILVlNK~D 238 (604)
|++||++|+. +.+...|||||+|||+|||||||||+|||||+|||||+|++++|++|++|+++. ..|..+||+||+|
T Consensus 137 Flewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaD 216 (562)
T KOG1424|consen 137 FLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKAD 216 (562)
T ss_pred HHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhh
Confidence 9999999985 568899999999999999999999999999999999999999999999999974 4589999999999
Q ss_pred CCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchh
Q psy3589 239 LAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLS 318 (604)
Q Consensus 239 Lv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~ 318 (604)
|++++++.+|++||...+ +++|||||+...... + .++++...+ ...++..... .++...+|+
T Consensus 217 Ll~~~qr~aWa~YF~~~n--i~~vf~SA~~at~~~---~---~~~~~e~~r------~~d~~~~~~~---~~~~~~~d~- 278 (562)
T KOG1424|consen 217 LLPPEQRVAWAEYFRQNN--IPVVFFSALAATEQL---E---SKVLKEDRR------SLDGVSRALG---AIFVGEVDL- 278 (562)
T ss_pred cCCHHHHHHHHHHHHhcC--ceEEEEecccccccc---c---ccchhhhhh------cccchhhhcc---ccccccchh-
Confidence 999999999999999985 999999998632221 1 112222222 2223222222 122223332
Q ss_pred hHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCc
Q psy3589 319 SWERKIAEEMHLEYEDVEEEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRT 398 (604)
Q Consensus 319 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i 398 (604)
+|.++. . +.++.+. .......++++.. +..+++++ .++||+||+|||||||+||+|+|.++++++.+
T Consensus 279 ----~i~r~~-~--d~~e~~~----v~~~~~~s~~~~~-~t~~~~~~-~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~T 345 (562)
T KOG1424|consen 279 ----KIARDK-G--DGEEIED----VEQLRLISAMEPT-PTGERYKD-VVTVGFVGYPNVGKSSTINALVGRKKVSVSST 345 (562)
T ss_pred ----hhhhhc-c--cccchhh----HHhhhhhhccccC-CCCcCCCc-eeEEEeecCCCCchhHHHHHHhcCceeeeecC
Confidence 222222 1 1000110 1111112233433 44556666 89999999999999999999999999999999
Q ss_pred CcccceeEEEEecCCeEEecCCCccCCCCCC-hhhhHhhcccccccccCchHHHHHHHHhcCHHHHhhcC------CCCC
Q psy3589 399 PGHTKHFQTIFLTDNIRLCDCPGLVFPSKVP-KPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIK------HPDD 471 (604)
Q Consensus 399 ~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~-~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~------~p~~ 471 (604)
||+|+|||+++++..+.||||||++||++.. +..+++.|++||+++++++..+.++++++++..+..++ .+..
T Consensus 346 PGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~emvl~GiLPIDQmrd~~~~~~llaerIP~~~Le~~Y~~k~~e~~~~ 425 (562)
T KOG1424|consen 346 PGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEMVLNGILPIDQLRDHYGAVGLLAERIPRHVLERLYGHKPREDPED 425 (562)
T ss_pred CCCcceeEEEEcCCCceecCCCCccccCCCchHHHHHHhcCccHHHhhcccchHHHHHHhcCHHHHHHHhCCCcccccCC
Confidence 9999999999999999999999999999986 88899999999999999999999999999998887776 2344
Q ss_pred cccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHH
Q psy3589 472 DEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQA 546 (604)
Q Consensus 472 ~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~ 546 (604)
..+|.+.+++.+|+.+|||++.+|+ +|..++||.||++|.+|+|.+++.||++----+.|-.|-|.........
T Consensus 426 ~~pp~A~ell~a~a~~RGfmts~~~-~D~~RAAr~ILKDyv~GKL~~~~~PPg~~~~~~~~~~~pe~~~~~~~~~ 499 (562)
T KOG1424|consen 426 SRPPSAAELLNAYAYKRGFMTSKGL-PDEYRAARYILKDYVSGKLLYCFPPPGYEPQKFTWEEHPETTERVYLQD 499 (562)
T ss_pred CCCchHHHHHHHHHHhcchhhhccC-CcchHHHHHHHHHHhCCeeeeeeCCCCCCccccchhhCchHhhhhhhhh
Confidence 6688999999999999999987666 5999999999999999999999999997665566777777665544443
No 2
>KOG2423|consensus
Probab=100.00 E-value=5.3e-35 Score=297.68 Aligned_cols=316 Identities=25% Similarity=0.396 Sum_probs=250.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HhccCCC----CCCcchh--hHHHHHHHHHHhhhcCE
Q psy3589 131 DYFLPELDFPKRPEWNFNMSIDQLDRREQDYFRDYLSNI----ESKFAWK----DLSYFEL--NLETWRQLWRVLEMSDI 200 (604)
Q Consensus 131 ~~~~~~l~~p~rP~w~~~~t~~~l~~~E~~~f~~w~~~~----~~~~~~~----~lt~fE~--Nle~wRQlwrviE~sDi 200 (604)
+.| ..=...+||+..+. +-|+|-+.-++.-..|-..+ .++..+. .=.-|.. ...+|-.|..||..|||
T Consensus 139 ~tF-G~KsqRKRp~L~~s-~le~L~k~a~e~~~~yee~~~~~~~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDV 216 (572)
T KOG2423|consen 139 DTF-GPKSQRKRPKLTAS-SLEELSKAAEESDDKYEEKKLGDLREEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDV 216 (572)
T ss_pred hhh-CchhhhcCcccchh-hHHHHHHHhhhhhhhhhhhccccchhhcccchHHHHHHHHhccchhHHHHHHHHhhcccce
Confidence 444 45567899999887 88888888777776775442 1221111 1122443 35899999999999999
Q ss_pred EEEEEecCCCCCCCChhHHHHhhc-cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccccccccc
Q psy3589 201 ILIIIDIRYPCLMFPPTLYDYVTG-TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNNIENS 279 (604)
Q Consensus 201 Vl~VvDaR~Pl~~~~~~L~~yv~~-~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~~~~~~~ 279 (604)
||+|+|||+|+.++|..++.|+++ .++|++|+||||+||+|.....+|...|...||.+ .|-|.-.
T Consensus 217 vvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTi---AfHAsi~---------- 283 (572)
T KOG2423|consen 217 VVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTI---AFHASIN---------- 283 (572)
T ss_pred eEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcce---eeehhhc----------
Confidence 999999999999999999999986 57899999999999999999999999999999754 3433210
Q ss_pred cchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhhhccchhh
Q psy3589 280 NKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELKKVDTNYEV 359 (604)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (604)
+..|-..|++.+..+..-.
T Consensus 284 ----------------nsfGKgalI~llRQf~kLh--------------------------------------------- 302 (572)
T KOG2423|consen 284 ----------------NSFGKGALIQLLRQFAKLH--------------------------------------------- 302 (572)
T ss_pred ----------------CccchhHHHHHHHHHHhhc---------------------------------------------
Confidence 1223334555554431100
Q ss_pred ccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 360 HEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 360 ~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
.....+.||+||+||+||||+||+|.....+.+.+|||.|+-.|.+.+...++|+||||+++|+.......++.|+.
T Consensus 303 ---~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~ivLkGvV 379 (572)
T KOG2423|consen 303 ---SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVLKGVV 379 (572)
T ss_pred ---cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHHhhcee
Confidence 11345899999999999999999999999999999999999999999999999999999999998777777899999
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.+.++..+...+..++.++....+.+.+... ......++++.+|.+.|-| ++||++|....++++|++|..|+|.++
T Consensus 380 RVenv~~pe~yi~~vl~R~k~ehl~rtYkI~--~w~d~~dfle~La~k~GkL-lKGGEPd~~~vsKmvLnDwqRGkiP~F 456 (572)
T KOG2423|consen 380 RVENVKNPEDYIDGVLERCKPEHLSRTYKIS--GWNDSTDFLEKLAIKQGKL-LKGGEPDLVVVSKMVLNDWQRGKIPFF 456 (572)
T ss_pred eeeecCCHHHHHHHHHHhhhHHHHHhhhCCC--ccccHHHHHHHHHHHhCcc-ccCCCCchhHHHHHHhhHhhcCCCcee
Confidence 9999999999999999998866654433221 1234688999999999988 689999999999999999999999999
Q ss_pred cCCCCcccc
Q psy3589 520 LMPPQYLSK 528 (604)
Q Consensus 520 ~~pP~lLLL 528 (604)
+.||.+--.
T Consensus 457 VpPp~~e~~ 465 (572)
T KOG2423|consen 457 VPPPGLEER 465 (572)
T ss_pred cCCCccccc
Confidence 999965443
No 3
>KOG2484|consensus
Probab=100.00 E-value=4.3e-33 Score=286.09 Aligned_cols=269 Identities=30% Similarity=0.418 Sum_probs=209.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhc-cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTG-TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~-~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
.-+.+.+|||.|||||+|+|||+|++++|+++++.|.. ..+|++||||||+||+|.+.+..|..||+..+|.+ +|-+
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv--~fka 213 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTV--AFKA 213 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcc--eeec
Confidence 45678899999999999999999999999999999964 34599999999999999999999999999998753 3333
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
+...... +. ..+ ..+.-.|...|+..+..+..
T Consensus 214 st~~~~~--~~-----~~~--------~~s~c~gae~l~~~lgny~~--------------------------------- 245 (435)
T KOG2484|consen 214 STQMQNS--NS-----KNL--------QSSVCFGAETLMKVLGNYCR--------------------------------- 245 (435)
T ss_pred ccccccc--cc-----ccc--------ccchhhhHHHHHHHhcCccc---------------------------------
Confidence 2211000 00 000 00011344444444333210
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCC
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFP 425 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p 425 (604)
...-...+++||||.||+||||+||.|.....+.+|.+||.|+.+|.+.++..+.++|+||++++
T Consensus 246 ---------------~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 246 ---------------KGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPP 310 (435)
T ss_pred ---------------ccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCceeec
Confidence 00012448999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhhhHhhcccccccccCchHHHHHHHHhcCHHHHhhcC-CCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHH
Q psy3589 426 SKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIK-HPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAA 504 (604)
Q Consensus 426 ~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~-~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~A 504 (604)
+........+..+.++..+.+++..+..++.++.......++ .|.. ....+++..+++.+|.+ .+||.++...+|
T Consensus 311 ~~~~~~~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e~~~~~Y~~~~~---~~~~~Fl~~~ar~~G~~-~kGG~pd~~~AA 386 (435)
T KOG2484|consen 311 SIDEKDALALRNCIPIGKVADPVTPVSCILKRCSKESRSVLYNIPSI---RATDDFLEKFARRRGLL-LKGGIPDVNAAA 386 (435)
T ss_pred CCCccchhhhhcccccccccCccchHHHHHHHhhHHHHHHHhcCCCc---chHHHHHHHHHHHHhhh-hcCCCCcHHHHH
Confidence 887665556777778888899999999999988765543322 2221 23457899999999988 579999999999
Q ss_pred HHHHHhhccceeeeecCCCC
Q psy3589 505 NELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 505 r~ll~dlSgG~l~al~~pP~ 524 (604)
.++++||.+|+|.|+.+||.
T Consensus 387 ~~vl~Dw~~Gki~y~~~pp~ 406 (435)
T KOG2484|consen 387 FAVLNDWRTGKIGYYTLPPT 406 (435)
T ss_pred HHHHHhhccCceeeeeCCCh
Confidence 99999999999999999887
No 4
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.8e-31 Score=276.27 Aligned_cols=264 Identities=23% Similarity=0.391 Sum_probs=199.8
Q ss_pred CCcch-hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC
Q psy3589 178 LSYFE-LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF 256 (604)
Q Consensus 178 lt~fE-~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~ 256 (604)
++||. |+...|+|+|++++.||+||+|+|+|.|+...++.+..++. ++|+|+|+||+||++......|.+||...
T Consensus 4 ~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~---~kp~iiVlNK~DL~~~~~~~~~~~~~~~~- 79 (287)
T PRK09563 4 IQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG---NKPRLLILNKSDLADPEVTKKWIEYFEEQ- 79 (287)
T ss_pred CcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC---CCCEEEEEEchhcCCHHHHHHHHHHHHHc-
Confidence 78999 88899999999999999999999999999999999988875 68999999999999887778999999754
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchh
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVE 336 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~ 336 (604)
+..++++||. .+.|+.+|++.+..+++... .+..
T Consensus 80 -~~~vi~vSa~----------------------------~~~gi~~L~~~l~~~l~~~~---------~~~~-------- 113 (287)
T PRK09563 80 -GIKALAINAK----------------------------KGQGVKKILKAAKKLLKEKN---------ERRK-------- 113 (287)
T ss_pred -CCeEEEEECC----------------------------CcccHHHHHHHHHHHHHHHH---------hhhh--------
Confidence 3567888886 34567778777766432110 0000
Q ss_pred hhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEE
Q psy3589 337 EEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRL 416 (604)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l 416 (604)
........+++++||.||||||||||+|.|.....+|.+||+|++.+.+.+...+.+
T Consensus 114 -----------------------~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l 170 (287)
T PRK09563 114 -----------------------AKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLEL 170 (287)
T ss_pred -----------------------hcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEE
Confidence 011123457999999999999999999999998889999999999999998888999
Q ss_pred ecCCCccCCCCCChhhh---HhhcccccccccCchHHHHHHHHhcC------HHHHhhcCCCCCcccccHHHHHHHHHHh
Q psy3589 417 CDCPGLVFPSKVPKPLQ---VLMGSFPIAQLREPYSTVQYLAERMD------LIKLLHIKHPDDDEYWCAMDICDGWAQK 487 (604)
Q Consensus 417 ~D~pGl~~p~~~~~~~~---~l~g~~~i~~l~~~~~~i~~l~~~~~------l~~ll~~~~p~~~~~~~~~ell~~~a~~ 487 (604)
+||||+.+|........ .+.+..... +......+.+++..+. +...+.+ +.. ..+..+++..++++
T Consensus 171 ~DtPGi~~~~~~~~~~~~~l~~~~~i~~~-~~~~~~~~~~ll~~l~~~~~~~l~~~y~~--~~~--~~~~~~~l~~~a~~ 245 (287)
T PRK09563 171 LDTPGILWPKLEDQEVGLKLALTGAIKDE-ALDLEEVAIFALEYLSKHYPERLKERYKL--DEL--PEDILELLEAIARK 245 (287)
T ss_pred EECCCcCCCCCCcHHHHHHHHHhCCcchh-hcChHHHHHHHHHHHHhhCHHHHHHHhCC--CCC--CCCHHHHHHHHHHH
Confidence 99999998886554332 244543322 2222333334443322 1122222 211 12678999999999
Q ss_pred cchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 488 RSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 488 rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
+|++. +||.+|..++|+.++++|..|++..+.
T Consensus 246 ~g~~~-k~g~~D~~~aa~~~l~d~~~Gklg~~~ 277 (287)
T PRK09563 246 RGALR-KGGEIDYERASELLLNEFRNGKLGKIT 277 (287)
T ss_pred hCccc-cCCccCHHHHHHHHHHHHHcCCCCcEE
Confidence 99985 799999999999999999999987443
No 5
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=3.8e-31 Score=272.37 Aligned_cols=263 Identities=26% Similarity=0.399 Sum_probs=198.9
Q ss_pred CCcch-hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC
Q psy3589 178 LSYFE-LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF 256 (604)
Q Consensus 178 lt~fE-~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~ 256 (604)
++||. |...+|+|++++++.||+||+|+|||.|+.+.++.+.+++. ++|+|+|+||+||+++.....|.+||...
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~---~kp~IiVlNK~DL~~~~~~~~~~~~~~~~- 76 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG---NKPRLIVLNKADLADPAVTKQWLKYFEEK- 76 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC---CCCEEEEEEccccCCHHHHHHHHHHHHHc-
Confidence 47999 88899999999999999999999999999999999988885 68999999999999887778899999663
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchh
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVE 336 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~ 336 (604)
+..++++||. .+.|+.+|++.+.++++... ...
T Consensus 77 -~~~vi~iSa~----------------------------~~~gi~~L~~~i~~~~~~~~---------~~~--------- 109 (276)
T TIGR03596 77 -GIKALAINAK----------------------------KGKGVKKIIKAAKKLLKEKN---------EKL--------- 109 (276)
T ss_pred -CCeEEEEECC----------------------------CcccHHHHHHHHHHHHHHhh---------hhh---------
Confidence 3568889986 44577788877766532210 000
Q ss_pred hhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEE
Q psy3589 337 EEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRL 416 (604)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l 416 (604)
.........+++++||.||||||||||.|.|.....+|..||+|+..+.+.+...+.+
T Consensus 110 ----------------------~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l 167 (276)
T TIGR03596 110 ----------------------KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLEL 167 (276)
T ss_pred ----------------------hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCCCEEE
Confidence 0001123457899999999999999999999988889999999999999988888999
Q ss_pred ecCCCccCCCCCChhh---hHhhcccccccccCchHHHHHHHHhcC------HHHHhhcCCCCCcccccHHHHHHHHHHh
Q psy3589 417 CDCPGLVFPSKVPKPL---QVLMGSFPIAQLREPYSTVQYLAERMD------LIKLLHIKHPDDDEYWCAMDICDGWAQK 487 (604)
Q Consensus 417 ~D~pGl~~p~~~~~~~---~~l~g~~~i~~l~~~~~~i~~l~~~~~------l~~ll~~~~p~~~~~~~~~ell~~~a~~ 487 (604)
+||||+.+|....... ..+.|..+.. +.+....+.+++..+. +...+.+..+. .+..++++.++++
T Consensus 168 ~DtPG~~~~~~~~~~~~~~l~~~g~i~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~y~i~~~~----~~~~~~l~~~a~~ 242 (276)
T TIGR03596 168 LDTPGILWPKFEDQEVGLKLAATGAIKDE-ALDLEDVALFLLEYLLEHYPERLKERYKLDELP----EDIVELLEAIAKK 242 (276)
T ss_pred EECCCcccCCCCchHHHHHHHHhCCcccc-cCChHHHHHHHHHHHHhhCHHHHHHHhCcCCCC----CCHHHHHHHHHHH
Confidence 9999999987655432 2344544322 2233333334433221 12222222211 2578899999999
Q ss_pred cchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 488 RSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 488 rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
+|++. +||++|..++|+.++++|..|++..+
T Consensus 243 ~g~~~-k~g~~D~~~aa~~~l~d~~~Gklg~~ 273 (276)
T TIGR03596 243 RGCLL-KGGELDLDRAAEILLNDFRKGKLGRI 273 (276)
T ss_pred hCccc-cCCccCHHHHHHHHHHHHHcCCCCce
Confidence 99985 69999999999999999999997644
No 6
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=2.4e-30 Score=271.18 Aligned_cols=275 Identities=29% Similarity=0.419 Sum_probs=204.7
Q ss_pred CCCCcch-hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHh
Q psy3589 176 KDLSYFE-LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQS 254 (604)
Q Consensus 176 ~~lt~fE-~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~ 254 (604)
..+.||+ |+...|+|++++++.+|+|+.|+|||+|++++++.|++++. .++.|+|+||+||++...+..|.+||.+
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~---~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK---EKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc---cCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 3567776 89999999999999999999999999999999999999998 5667999999999999999999999999
Q ss_pred hCCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccc
Q psy3589 255 KFPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYED 334 (604)
Q Consensus 255 ~~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~ 334 (604)
.+ +...+++++... .+...+..++..+.. .++....
T Consensus 89 ~~-~~~~~~v~~~~~----------------------------~~~~~i~~~~~~~~~---------~~i~~~~------ 124 (322)
T COG1161 89 EE-GIKPIFVSAKSR----------------------------QGGKKIRKALEKLSE---------EKIKRLK------ 124 (322)
T ss_pred cC-CCccEEEEeecc----------------------------cCccchHHHHHHHHH---------HHHHHHh------
Confidence 86 455677777622 122223333322110 1111000
Q ss_pred hhhhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCe
Q psy3589 335 VEEEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNI 414 (604)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~ 414 (604)
........+++++||.||||||||||.|+|...+.+|..||.|++.|++.+...+
T Consensus 125 -------------------------~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i 179 (322)
T COG1161 125 -------------------------KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGI 179 (322)
T ss_pred -------------------------hcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCe
Confidence 0011234578999999999999999999999999999999999999999999999
Q ss_pred EEecCCCccCCCCCChhhhHhhcccccccccCchHHHHHHHHhcCH--------HHHhhcC-CCCC-cccccHHHHHHHH
Q psy3589 415 RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDL--------IKLLHIK-HPDD-DEYWCAMDICDGW 484 (604)
Q Consensus 415 ~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l--------~~ll~~~-~p~~-~~~~~~~ell~~~ 484 (604)
.++||||++++..... ...+.++.+...+.+....+..+..++.. ...+.+. .... .......+++..+
T Consensus 180 ~LlDtPGii~~~~~~~-~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~ 258 (322)
T COG1161 180 YLLDTPGIIPPKFDDD-ELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEHYGEKLNITRYESNPIHRTDPEEFLELI 258 (322)
T ss_pred EEecCCCcCCCCccch-HHHhhccccccccCccccChHHHHHHHHhhhhhhhhhhHhhCCcccccccccccCHHHHHHHH
Confidence 9999999999987653 44555666666665555444444433221 1111111 0000 1223567889999
Q ss_pred HHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 485 AQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 485 a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
+.++|++...||.++..+++..+++++..|.+.++..++
T Consensus 259 a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~ 297 (322)
T COG1161 259 AKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEE 297 (322)
T ss_pred HHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCC
Confidence 999996666799999999999999999999998776654
No 7
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.93 E-value=1.9e-25 Score=210.83 Aligned_cols=156 Identities=29% Similarity=0.538 Sum_probs=128.4
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhcc-CCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeecc
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGT-LGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~-~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
|+|++++.+|+|++|+|+++|+...+..+.+++... .++|+|+|+||+||+++.....|..+|.+.++.. ++++||.
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~-~~~iSa~- 78 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTI-AFHASIN- 78 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEE-EEEeecc-
Confidence 689999999999999999999988899999998742 3489999999999999888889999998876533 5667775
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhh
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETI 348 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 348 (604)
.+.|..+|++.+.++... .
T Consensus 79 ---------------------------~~~~~~~L~~~l~~~~~~-----------~----------------------- 97 (157)
T cd01858 79 ---------------------------NPFGKGSLIQLLRQFSKL-----------H----------------------- 97 (157)
T ss_pred ---------------------------ccccHHHHHHHHHHHHhh-----------h-----------------------
Confidence 345667777776553100 0
Q ss_pred hhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCc
Q psy3589 349 ELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGL 422 (604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl 422 (604)
...+.++++++|+||||||||||+|.|.....+|.++|+|++.+.+.+...++++||||+
T Consensus 98 --------------~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 98 --------------SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred --------------ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 011346899999999999999999999999999999999999998888888999999996
No 8
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.91 E-value=1.1e-23 Score=195.24 Aligned_cols=140 Identities=56% Similarity=0.934 Sum_probs=122.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhcc-CCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGT-LGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~-~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
+|+++|++++++|+||+|+|+++|....+..+.+++... .++|+|+|+||+||+++.....|.++|+..+ ..++++|
T Consensus 1 ~~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iS 78 (141)
T cd01857 1 VWRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFS 78 (141)
T ss_pred CHHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEE
Confidence 599999999999999999999999998888999998742 4799999999999999888889999998764 5678888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
|...
T Consensus 79 a~~~---------------------------------------------------------------------------- 82 (141)
T cd01857 79 ALKE---------------------------------------------------------------------------- 82 (141)
T ss_pred ecCC----------------------------------------------------------------------------
Confidence 7500
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCC
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFP 425 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p 425 (604)
..+++++|.+|+|||||+|+|.|...+.++..+|.|++.+.+.++...+++||||+.+|
T Consensus 83 ---------------------~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 83 ---------------------NATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred ---------------------CcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCcCCC
Confidence 01688999999999999999999988888889999999999888888999999999875
No 9
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.89 E-value=3.4e-22 Score=191.46 Aligned_cols=170 Identities=32% Similarity=0.488 Sum_probs=133.6
Q ss_pred cch-hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCC
Q psy3589 180 YFE-LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPK 258 (604)
Q Consensus 180 ~fE-~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~ 258 (604)
||. |..++++|+++.++.||+||+|+|++.|+......+..++. ++++|+|+||+||+++.....|.+|+...+
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~---~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~-- 75 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG---NKPRIIVLNKADLADPKKTKKWLKYFESKG-- 75 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc---CCCEEEEEehhhcCChHHHHHHHHHHHhcC--
Confidence 577 67799999999999999999999999999877766656554 589999999999998777778988887753
Q ss_pred ceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhh
Q psy3589 259 LTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEE 338 (604)
Q Consensus 259 ~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~ 338 (604)
..++++||. .+.|+++|.+.+...++. ...| .
T Consensus 76 ~~vi~iSa~----------------------------~~~gi~~L~~~l~~~l~~---~~~~-------~---------- 107 (171)
T cd01856 76 EKVLFVNAK----------------------------SGKGVKKLLKAAKKLLKD---IEKL-------K---------- 107 (171)
T ss_pred CeEEEEECC----------------------------CcccHHHHHHHHHHHHHH---Hhhh-------h----------
Confidence 467888886 456777888777664321 0000 0
Q ss_pred hhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEec
Q psy3589 339 DEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCD 418 (604)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D 418 (604)
.....+..++++++|.+|+|||||+|.|.+.....++..+++|...+.+.+...+.++|
T Consensus 108 ---------------------~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iD 166 (171)
T cd01856 108 ---------------------AKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLD 166 (171)
T ss_pred ---------------------hcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEecCCEEEEE
Confidence 00112334789999999999999999999988777888999999998887777889999
Q ss_pred CCCcc
Q psy3589 419 CPGLV 423 (604)
Q Consensus 419 ~pGl~ 423 (604)
|||++
T Consensus 167 tpG~~ 171 (171)
T cd01856 167 TPGIL 171 (171)
T ss_pred CCCCC
Confidence 99974
No 10
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.8e-23 Score=207.27 Aligned_cols=162 Identities=19% Similarity=0.128 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee-------EEEEecCCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF-------QTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~-------q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.++||||||+|||||+++|+|+++|..|.+...++.. ...|+++... + ...||. ....-+..|.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~-~---d~~fP~--tV~d~V~~g~~~ 104 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSS-V---DRSFPI--TVKDVVLLGRYG 104 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccc-c---CCCCCc--CHHHHHHccCcc
Confidence 36899999999999999999999999999886544332 1223333221 0 112232 233333444333
Q ss_pred cccccC-----chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccce
Q psy3589 441 IAQLRE-----PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGR 515 (604)
Q Consensus 441 i~~l~~-----~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~ 515 (604)
-..+.. ....+..+++++++..+. .+.+-.+||||.|++.+||+|+.+
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~----------------------~r~i~~LSGGQ~QRV~lARAL~~~----- 157 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLR----------------------DRQIGELSGGQKQRVLLARALAQN----- 157 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhh----------------------CCcccccCcHHHHHHHHHHHhccC-----
Confidence 221111 124455555555443221 122334679999999999999555
Q ss_pred eeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 516 ICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 516 l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|+|||| |+++|+.+...|.++ .++++.|+||||||||+..+...
T Consensus 158 -------p~lllLDEP-~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 158 -------PDLLLLDEP-FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred -------CCEEEecCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 999999999 999999999999988 67777799999999999999876
No 11
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.89 E-value=2.3e-22 Score=192.53 Aligned_cols=164 Identities=34% Similarity=0.519 Sum_probs=113.5
Q ss_pred CEEEEEEecCCCCCCCChhHHHHhh-ccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccccccc
Q psy3589 199 DIILIIIDIRYPCLMFPPTLYDYVT-GTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNNIE 277 (604)
Q Consensus 199 DiVl~VvDaR~Pl~~~~~~L~~yv~-~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~~~~~ 277 (604)
|+||+|+|||.|+...++.+.+++. ...++|+|+|+||+||+++..+..|.+||.+.++ .+.|.+......
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~----- 72 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFP---TVAFKASTQSQK----- 72 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCC---EEEEEecccccc-----
Confidence 8999999999999999999999841 2346999999999999999999999999988753 333433211100
Q ss_pred cccchhhhHHHhhh-----h--hhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhh
Q psy3589 278 NSNKKGLQVRRRRG-----K--MKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIEL 350 (604)
Q Consensus 278 ~~~~~~~~~~~~~~-----~--~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (604)
+.++....+. . ......|...|++.+..+.
T Consensus 73 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--------------------------------------- 109 (172)
T cd04178 73 ----KNLGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYS--------------------------------------- 109 (172)
T ss_pred ----cchhhcccccchhhhhhhhhccccCHHHHHHHHHHHh---------------------------------------
Confidence 0000000000 0 0001111222222111100
Q ss_pred hhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCc
Q psy3589 351 KKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGL 422 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl 422 (604)
......+.++++++|.||+|||||||+|+|.....+|..||+|++.+++.....+.++||||+
T Consensus 110 ---------~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 110 ---------RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred ---------hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 001123457999999999999999999999998899999999999999988888999999996
No 12
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.6e-23 Score=201.11 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCC-----hhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVP-----KPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~-----~~~~~l~g~~~i~ 442 (604)
-.++||||+||||||||+||.++..++.|.+...+....... ....+....|++|+.+.- ....+..+-....
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~--~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK--DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh--hHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 358899999999999999999999999998765543221100 001112233555554421 0011111100000
Q ss_pred c--ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 Q--LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~--l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
. -.+....+..+++++++.+ ........ +||||.|++++||+| +
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~--------------------ka~~yP~q--LSGGQqQRVAIARAL------------a 152 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLAD--------------------KADAYPAQ--LSGGQQQRVAIARAL------------A 152 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchh--------------------hhhhCccc--cCcHHHHHHHHHHHH------------c
Confidence 0 0011112222333333221 11222232 579999999999999 5
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
.+|+++|+||| ||+|||+.+..+.+. ..+++.|+|+|+|||++.+|.++.
T Consensus 153 M~P~vmLFDEP-TSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 153 MDPKVMLFDEP-TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred CCCCEEeecCC-cccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 56999999999 999999999988888 788899999999999999999884
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.4e-23 Score=204.19 Aligned_cols=165 Identities=17% Similarity=0.051 Sum_probs=107.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccc-cccCc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIA-QLREP 447 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~-~l~~~ 447 (604)
.|+||||+|||||||||+|+|+..++.|.+...+..+ ........++++.+.+.....+.... ..+.-... .-.+.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV--~l~l~~~~~~~~e~ 107 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNV--ALGLELRGKSKAEA 107 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhh--eehhhccccchHhH
Confidence 5899999999999999999999999999876555443 11112223444444443332221111 11100000 00111
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..+++.+++..... .... .+|||+.|++++||+++.+ |++||
T Consensus 108 ~~~a~~~L~~VgL~~~~~--------------------~~P~--qLSGGMrQRVaiARAL~~~------------P~lLL 153 (248)
T COG1116 108 RERAKELLELVGLAGFED--------------------KYPH--QLSGGMRQRVAIARALATR------------PKLLL 153 (248)
T ss_pred HHHHHHHHHHcCCcchhh--------------------cCcc--ccChHHHHHHHHHHHHhcC------------CCEEE
Confidence 223444445544432211 1111 2579999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
|||| +++||..++..+++. ....+.+.||||||||.+||..+.
T Consensus 154 lDEP-FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~Ls 198 (248)
T COG1116 154 LDEP-FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA 198 (248)
T ss_pred EcCC-cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhh
Confidence 9999 999999998888876 235667899999999999998883
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.88 E-value=6.3e-23 Score=205.73 Aligned_cols=179 Identities=18% Similarity=0.148 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|||||||||||||++|+|+++|..|.+...++.+..... ...+ ++.+.+-. +........+..|.+|...
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~--~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA--PFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC--CCCcEEeehHhhcCCcccc
Confidence 3589999999999999999999999999988777665543321 1122 23333322 2222233345566555322
Q ss_pred ccC-----chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 444 LRE-----PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 444 l~~-----~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
... ....+...++.+++..+ ..+.+.++|||+.|+..+|+++.++
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~l----------------------a~r~~~~LSGGerQrv~iArALaQ~-------- 156 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHL----------------------ADRPVDELSGGERQRVLIARALAQE-------- 156 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHH----------------------hcCcccccChhHHHHHHHHHHHhcC--------
Confidence 221 12223333444333221 1244566789999999999999555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhhh----hhccCCCcccCc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNVK----RKHKGEETEEDE 583 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~~~ 583 (604)
|++|+|||| |++||+..+..+.++ ..+. +.|.|||+|+||++.|.++. .-.+|.......
T Consensus 157 ----~~iLLLDEP-Ts~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 157 ----TPILLLDEP-TSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred ----CCEEEeCCC-ccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 999999999 999999998888887 5555 56999999999999998773 455566665543
No 15
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.88 E-value=1.8e-21 Score=183.28 Aligned_cols=155 Identities=35% Similarity=0.557 Sum_probs=124.9
Q ss_pred HHHHHHHHhhh-cCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 187 TWRQLWRVLEM-SDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 187 ~wRQlwrviE~-sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
|||++++.+.+ +|+||+|+|+++|.......+..++. ..++|+|+|+||+||++......|..++.. .+..++++|
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~iS 77 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVL-ELGKKLLIVLNKADLVPKEVLEKWKSIKES--EGIPVVYVS 77 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHH-hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 69999999887 99999999999998877777877765 347899999999999887666677655443 245688899
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
|. ++.|+++|.+.+.++++.
T Consensus 78 a~----------------------------~~~gi~~L~~~l~~~~~~-------------------------------- 97 (156)
T cd01859 78 AK----------------------------ERLGTKILRRTIKELAKI-------------------------------- 97 (156)
T ss_pred cc----------------------------ccccHHHHHHHHHHHHhh--------------------------------
Confidence 86 456788888877664321
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCc
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGL 422 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl 422 (604)
.....++.++|.+|+|||||+|.|.+.....++.++|.|++.+.+.....+.++||||+
T Consensus 98 ------------------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 98 ------------------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred ------------------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 01235789999999999999999998877778888999988887777778899999996
No 16
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.87 E-value=4.6e-21 Score=180.55 Aligned_cols=154 Identities=29% Similarity=0.506 Sum_probs=118.9
Q ss_pred CEEEEEEecCCCCCCCChhHH-HHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccccccc
Q psy3589 199 DIILIIIDIRYPCLMFPPTLY-DYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNNIE 277 (604)
Q Consensus 199 DiVl~VvDaR~Pl~~~~~~L~-~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~~~~~ 277 (604)
|+||+|+|+++|..+....+. .++. ..++|+|+|+||+||+++..+..|..+|...+ ...++++||.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~-~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~---------- 68 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIK-EKGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISAT---------- 68 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHh-cCCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEecc----------
Confidence 899999999999998888777 4554 45799999999999999888888987776654 3568888886
Q ss_pred cccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhhhccch
Q psy3589 278 NSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELKKVDTNY 357 (604)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (604)
++.|+.+|.+.+.+.... ++....
T Consensus 69 ------------------~~~gi~~L~~~i~~~~~~---------~~~~~~----------------------------- 92 (155)
T cd01849 69 ------------------NGQGIEKKESAFTKQTNS---------NLKSYA----------------------------- 92 (155)
T ss_pred ------------------CCcChhhHHHHHHHHhHH---------HHHHHH-----------------------------
Confidence 445677777766542110 000000
Q ss_pred hhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCc
Q psy3589 358 EVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGL 422 (604)
Q Consensus 358 ~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl 422 (604)
......+..+++++|.+|+|||||+|+|++.....++..+++|+..+.+.....+.++||||+
T Consensus 93 --~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 93 --KDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred --hccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 001122457899999999999999999999987778889999999999888888999999996
No 17
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=5.3e-22 Score=195.36 Aligned_cols=170 Identities=17% Similarity=0.109 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-eEEecCCCccCCCCC-----ChhhhHhhcccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKV-----PKPLQVLMGSFPIA 442 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~-----~~~~~~l~g~~~i~ 442 (604)
.|+|+||+|||||||||+|.|+..|+.|.+...+.++....-... ..-.+..|++|+.+. +....+.... .+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl-~~~ 111 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPL-LIA 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHH-HHc
Confidence 599999999999999999999999988876555544322211000 001122344444431 1111111000 000
Q ss_pred ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... .....+..++..+++...... ..-..+||||.|++++||+++.+
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~---------------------~~p~eLSGGqqQRVAIARAL~~~---------- 160 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLK---------------------KKPSELSGGQQQRVAIARALINN---------- 160 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhcc---------------------CCchhcCHHHHHHHHHHHHHhcC----------
Confidence 000 111223333333333222111 11123679999999999999666
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNVKRK 573 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~~~~ 573 (604)
|+++++||| |.+||..+...+.++ ..+. +.|.||||||||...+..+.|.
T Consensus 161 --P~iilADEP-TgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~ 212 (226)
T COG1136 161 --PKIILADEP-TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRV 212 (226)
T ss_pred --CCeEEeeCc-cccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEE
Confidence 999999999 999999998888887 4453 5589999999999999877544
No 18
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=2.2e-21 Score=190.01 Aligned_cols=169 Identities=14% Similarity=0.047 Sum_probs=112.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ec-CCeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LT-DNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~-~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-+++||++||||||+|++|.++..++.|.+...+..+..+. +. ...|+++..|++....+......+......+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k- 107 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK- 107 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH-
Confidence 47899999999999999999999999999987776655432 11 22456666666433332222222111111110
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++... ++.+ +... .+||||.|++.+||+|..+ |+
T Consensus 108 ~~i~~r~~ELl~lvgL~p~---------------~~~~---RyP~--eLSGGQQQRVGv~RALAad------------P~ 155 (309)
T COG1125 108 ERIKKRADELLDLVGLDPS---------------EYAD---RYPH--ELSGGQQQRVGVARALAAD------------PP 155 (309)
T ss_pred HHHHHHHHHHHHHhCCCHH---------------HHhh---cCch--hcCcchhhHHHHHHHHhcC------------CC
Confidence 0111223444444443211 1111 1111 2579999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~~ 571 (604)
++||||| +++||+.++..|++. ..+ ++.++||||||||++||..+.
T Consensus 156 ilLMDEP-FgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLa 203 (309)
T COG1125 156 ILLMDEP-FGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLA 203 (309)
T ss_pred eEeecCC-ccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhh
Confidence 9999999 999999999999877 444 456999999999999998883
No 19
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.84 E-value=3e-21 Score=181.71 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChh-hhHh-hccccccccc-
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKP-LQVL-MGSFPIAQLR- 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~-~~~l-~g~~~i~~l~- 445 (604)
-+.|+||+||||||||++|++...|+.|.+...+.++..+.-.+..++....|++|+.+--.. ..++ .-.+|+.-..
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~ 109 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK 109 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCC
Confidence 577999999999999999999999999998877766655543333344445566665541000 0000 0001111000
Q ss_pred ---CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 446 ---EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 446 ---~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
+....+..++..+++....+. -. ..+|||++|+..+||++++.
T Consensus 110 ~~~~i~~rV~~~L~~VgL~~k~~~--------------------lP--~~LSGGEQQRvaIARAiV~~------------ 155 (223)
T COG2884 110 PPREIRRRVSEVLDLVGLKHKARA--------------------LP--SQLSGGEQQRVAIARAIVNQ------------ 155 (223)
T ss_pred CHHHHHHHHHHHHHHhccchhhhc--------------------Cc--cccCchHHHHHHHHHHHccC------------
Confidence 011122223333332211110 01 13679999999999999666
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|.+||.||| |.+||+.....+.++ .+++..|.||||+|||.+.+..+
T Consensus 156 P~vLlADEP-TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 156 PAVLLADEP-TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred CCeEeecCC-CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 999999999 999999998888877 77888999999999999998877
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.2e-20 Score=184.75 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE------EecCCeEEecCCCccCCCCCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI------FLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~------~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
-++||||++|||||||.++|+|+.+++.|.+...++..... +-.-.+.+.|..+-+-|... .. ..+..-+.+
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t-v~-~~l~Epl~~ 111 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT-VG-RILSEPLRP 111 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh-HH-HHHhhhhcc
Confidence 47999999999999999999999999999987665433221 11112333343333333221 11 111111111
Q ss_pred ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 442 AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 442 ~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
..+......+..++..+++..-+. .++. ..+||||.|+.++||+| ..
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l--------------------~R~P-~eLSGGQ~QRiaIARAL------------~~ 158 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFL--------------------DRRP-HELSGGQRQRIAIARAL------------IP 158 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHH--------------------hcCc-hhcChhHHHHHHHHHHh------------cc
Confidence 111111222445555555433221 1111 12679999999999999 55
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhhh----hhccCCCcccCcCc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNVK----RKHKGEETEEDEGE 585 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~~~~~ 585 (604)
.|++|||||| |++||+..+..+.++ ..+ ++++.|+||||||+..+..+. .-.+|..+++-+..
T Consensus 159 ~PklLIlDEp-tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 159 EPKLLILDEP-TSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred CCCEEEecCc-hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 5999999999 999999999888888 444 457899999999999987763 45667666654433
No 21
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.2e-21 Score=194.15 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=112.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhh-Hh-hccccccccc-
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQ-VL-MGSFPIAQLR- 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~-~l-~g~~~i~~l~- 445 (604)
.+||||++|+|||||+++|.++..|+.|.+...+.++..+.-..-..+....|++|+.+.-.... +. .-.+|+.-..
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~ 113 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV 113 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC
Confidence 59999999999999999999999999999877776554432111111112224444333100000 00 0011111000
Q ss_pred ---CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 446 ---EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 446 ---~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
+....+..+++.+++.... .... ..+||||.|++.+||++..+
T Consensus 114 ~k~ei~~RV~elLelVgL~dk~--------------------~~yP--~qLSGGQKQRVaIARALa~~------------ 159 (339)
T COG1135 114 PKAEIKQRVAELLELVGLSDKA--------------------DRYP--AQLSGGQKQRVAIARALANN------------ 159 (339)
T ss_pred CHHHHHHHHHHHHHHcCChhhh--------------------ccCc--hhcCcchhhHHHHHHHHhcC------------
Confidence 0111222233333222111 1111 23679999999999999555
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh----hhhccCCCcccC
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV----KRKHKGEETEED 582 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~~ 582 (604)
|++||+||| ||+|||.+...+.++ ..+ ++.|.||+||||.|+.++.+ ...++|+..+..
T Consensus 160 P~iLL~DEa-TSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G 224 (339)
T COG1135 160 PKILLCDEA-TSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG 224 (339)
T ss_pred CCEEEecCc-cccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEec
Confidence 999999999 999999998888877 444 45799999999999999877 456677766654
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.1e-20 Score=179.29 Aligned_cols=178 Identities=16% Similarity=0.101 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCC-eEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+||+||||+|++|++++.|+.|.+...+-+.+... .... ..+....|++........+..+...+.+...
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~ 108 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK 108 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence 358999999999999999999999999998765554433211 1111 1222333333222222222222221111100
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
+....+..+.++ +++.+.+.++.+-+ |.|+.+++.+||+++++ |.
T Consensus 109 -~~kari~~l~k~--------------------l~l~~~~~rRv~~~--S~G~kqkV~iARAlvh~------------P~ 153 (245)
T COG4555 109 -EIKARIAELSKR--------------------LQLLEYLDRRVGEF--STGMKQKVAIARALVHD------------PS 153 (245)
T ss_pred -HHHHHHHHHHHH--------------------hChHHHHHHHHhhh--chhhHHHHHHHHHHhcC------------CC
Confidence 001112222222 23333334444433 47889999999999666 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCccc
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETEE 581 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~ 581 (604)
+++|||| |+|||+.+...+.++ .++++.|.+||++||++.|++.+ +..|+|+-..+
T Consensus 154 i~vlDEP-~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 154 ILVLDEP-TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred eEEEcCC-CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 9999999 999999999999998 77888899999999999999855 68899987764
No 23
>PRK12289 GTPase RsgA; Reviewed
Probab=99.82 E-value=1.5e-19 Score=191.08 Aligned_cols=177 Identities=24% Similarity=0.347 Sum_probs=130.3
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCccc
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNL 272 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~ 272 (604)
+..+|+||+|+|+.+|.+ .+..|.+|+.. ..++|+|||+||+||+++.....|.++|... ++.++++||.
T Consensus 87 ~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~--g~~v~~iSA~----- 158 (352)
T PRK12289 87 VANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQW--GYQPLFISVE----- 158 (352)
T ss_pred hhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhc--CCeEEEEEcC-----
Confidence 788999999999998763 23356777753 3579999999999999888778898888665 4678888886
Q ss_pred ccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhh
Q psy3589 273 RNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELKK 352 (604)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (604)
++.|+.+|++.+..
T Consensus 159 -----------------------tg~GI~eL~~~L~~------------------------------------------- 172 (352)
T PRK12289 159 -----------------------TGIGLEALLEQLRN------------------------------------------- 172 (352)
T ss_pred -----------------------CCCCHHHHhhhhcc-------------------------------------------
Confidence 44566666554311
Q ss_pred hccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCCCccCC
Q psy3589 353 VDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCPGLVFP 425 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~pGl~~p 425 (604)
..++|+|+||||||||||.|.|.....+|.+++ +|++.+.+.+..+..++||||+..+
T Consensus 173 ---------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 173 ---------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred ---------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 147899999999999999999998888888888 7888888878777799999999866
Q ss_pred CCCChhhhHhhcccccccccCchHHHHHHH--HhcCHHHHhhcCCCC
Q psy3589 426 SKVPKPLQVLMGSFPIAQLREPYSTVQYLA--ERMDLIKLLHIKHPD 470 (604)
Q Consensus 426 ~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~--~~~~l~~ll~~~~p~ 470 (604)
... .... .+...+..+..++ ..|.+..|.|...|.
T Consensus 238 ~l~-~~~~---------~l~~~F~e~~~~~~~~~CrF~dC~H~~EPg 274 (352)
T PRK12289 238 DLD-CSPR---------ELAHYFPEARQRLAQGNCQFNDCLHRDEPN 274 (352)
T ss_pred ccc-cCHH---------HHHhhHHHHHHhHhhCceEccCCccCCCCC
Confidence 542 1111 1122233333332 567778888777664
No 24
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.82 E-value=2e-19 Score=175.13 Aligned_cols=162 Identities=24% Similarity=0.297 Sum_probs=120.5
Q ss_pred CCCcchhhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh----HHHHHHHH
Q psy3589 177 DLSYFELNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL----VLAWKHYF 252 (604)
Q Consensus 177 ~lt~fE~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~----~~~w~~yf 252 (604)
....|+.+..++..+...++++|+||+|+|+++|.......+... ..++|+|+|+||+||++... ...|...+
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~---~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 90 (190)
T cd01855 14 DPVEIPDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF---GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAK 90 (190)
T ss_pred ccccCChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHHh---cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHH
Confidence 345666777788999999999999999999999876666665322 24689999999999986543 33454111
Q ss_pred --Hhh-CCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhh
Q psy3589 253 --QSK-FPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMH 329 (604)
Q Consensus 253 --~~~-~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~ 329 (604)
... ++...++++||. .+.|+++|++.+...++
T Consensus 91 ~~~~~~~~~~~i~~vSA~----------------------------~~~gi~eL~~~l~~~l~----------------- 125 (190)
T cd01855 91 AAAGLGLKPKDVILISAK----------------------------KGWGVEELINAIKKLAK----------------- 125 (190)
T ss_pred HHhhcCCCcccEEEEECC----------------------------CCCCHHHHHHHHHHHhh-----------------
Confidence 111 112357888886 45678888877755311
Q ss_pred hcccchhhhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCC--------ccccCcCcc
Q psy3589 330 LEYEDVEEEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKV--------VSVSRTPGH 401 (604)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~--------~~~g~i~g~ 401 (604)
...+++++|.+|||||||||+|.+... +.++..||+
T Consensus 126 ------------------------------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gt 169 (190)
T cd01855 126 ------------------------------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGT 169 (190)
T ss_pred ------------------------------------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCe
Confidence 114699999999999999999998642 467788999
Q ss_pred cceeEEEEecCCeEEecCCCc
Q psy3589 402 TKHFQTIFLTDNIRLCDCPGL 422 (604)
Q Consensus 402 t~~~q~~~~~~~~~l~D~pGl 422 (604)
|++.+.+.+...+.++||||+
T Consensus 170 T~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 170 TLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred eeeeEEEecCCCCEEEeCcCC
Confidence 999999888778899999996
No 25
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1.8e-20 Score=194.51 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEec-CCeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFLT-DNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~~-~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|||||||||||++|+|+..++.|.+...+.+... .... ...++.+.|.+.....+...+..+..++....
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~- 110 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK- 110 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-
Confidence 3599999999999999999999999988887554433221 1111 12455565653322222333333333333221
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++... . ....-..|+|+.++..+|.+|+.+ |+
T Consensus 111 ~~~~~~~~~~l~~~~L~~~---------------------~-~~~~~~lS~G~kqrl~ia~aL~~~------------P~ 156 (293)
T COG1131 111 EEAEERIEELLELFGLEDK---------------------A-NKKVRTLSGGMKQRLSIALALLHD------------PE 156 (293)
T ss_pred hHHHHHHHHHHHHcCCchh---------------------h-CcchhhcCHHHHHHHHHHHHHhcC------------CC
Confidence 1112344455555443210 0 111223568889999999888666 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCC-CeEEEEecChhhhhhh----hhhccCCCccc
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYK-HPLVSVSDDEAEGKNV----KRKHKGEETEE 581 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g-~tVIiVTHD~~e~~~~----~~~~~~~~~~~ 581 (604)
++||||| |+|||+.++..+.++ ..+...+ .|||++||.++++..+ ...++|.....
T Consensus 157 lliLDEP-t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~ 218 (293)
T COG1131 157 LLILDEP-TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218 (293)
T ss_pred EEEECCC-CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999 999999999999988 6666666 7999999999999885 34566665553
No 26
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.82 E-value=2.1e-20 Score=185.51 Aligned_cols=167 Identities=14% Similarity=0.077 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------e-cCCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------L-TDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~-~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+..+.... . ....++.+.+.+.........+........
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence 369999999999999999999999998887755443321110 0 111233333332211111111110000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... ......+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 110 ~~~-~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LSgG~~qrv~laral~~~---------- 156 (216)
T TIGR00960 110 VPP-RDANERVSAALEKVGLEGK--------------------A--HALPMQLSGGEQQRVAIARAIVHK---------- 156 (216)
T ss_pred CCH-HHHHHHHHHHHHHcCChhh--------------------h--hCChhhCCHHHHHHHHHHHHHhcC----------
Confidence 000 0001112222222222110 0 112234679999999999999555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+.+.|||+||||++++..+
T Consensus 157 --p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 157 --PPLLLADEP-TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY 204 (216)
T ss_pred --CCEEEEeCC-CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 45555589999999999998765
No 27
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.82 E-value=4.7e-20 Score=172.37 Aligned_cols=167 Identities=17% Similarity=0.126 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC--CeEEecCCCccCCCCCChhhhHhhcccccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD--NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL- 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~--~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l- 444 (604)
-.++|+||+|+|||||||+|+|...|..|.+...+.+........ -..+++...++ .+.+....+-.|..|--.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLF--aHLtV~qNigLGl~P~LkL~ 103 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLF--AHLTVAQNIGLGLSPGLKLN 103 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccc--hhhhhhhhhcccCCcccccC
Confidence 469999999999999999999999999998866554432211110 01111111111 0111122222333332111
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++.++++..++ .+..+. +|||+.|++++||+++++ -.
T Consensus 104 a~~r~~v~~aa~~vGl~~~~--------------------~RLP~~--LSGGqRQRvALARclvR~------------~P 149 (231)
T COG3840 104 AEQREKVEAAAAQVGLAGFL--------------------KRLPGE--LSGGQRQRVALARCLVRE------------QP 149 (231)
T ss_pred HHHHHHHHHHHHHhChhhHh--------------------hhCccc--cCchHHHHHHHHHHHhcc------------CC
Confidence 11233455555555554332 222333 569999999999999777 88
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~~ 571 (604)
||+|||| ++.||+..+..+..+ ..+ .+.+.|++||||..+++..+.
T Consensus 150 ilLLDEP-FsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia 197 (231)
T COG3840 150 ILLLDEP-FSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIA 197 (231)
T ss_pred eEEecCc-hhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhh
Confidence 9999999 999999998888877 444 566899999999999998874
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.6e-20 Score=186.32 Aligned_cols=175 Identities=16% Similarity=0.018 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+. +.. .....+..+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~-~~~-tv~~~l~~~~~~ 104 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF-DSL-TVFENVAFPLRE 104 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccC-CCC-cHHHHHHHHHhh
Confidence 369999999999999999999999998887754443321110 0111 1233333322 211 111111111000
Q ss_pred ccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 441 IAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 441 i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
..... .....+..++..+++.. .. .+....+|||+.++..+|++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LSgG~~qrv~ia~al~~~-------- 154 (235)
T cd03261 105 HTRLSEEEIREIVLEKLEAVGLRG--------------------AE--DLYPAELSGGMKKRVALARALALD-------- 154 (235)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCch--------------------hh--cCChhhCCHHHHHHHHHHHHHhcC--------
Confidence 00000 00011122222222110 00 112234679999999999999555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|+++||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+ ....+|...
T Consensus 155 ----p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 155 ----PELLLYDEP-TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred ----CCEEEecCC-cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 999999999 999999999999888 44444 489999999999988764 233455544
No 29
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=4.1e-20 Score=204.29 Aligned_cols=63 Identities=27% Similarity=0.338 Sum_probs=52.9
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.-+..+|++| +.+|++|||||| |||||..++.||.++ |..+.+|||+||||+++...+
T Consensus 154 LSGG~r~Rv~LA~aL------------~~~pDlLLLDEP-TNHLD~~~i~WLe~~--L~~~~gtviiVSHDR~FLd~V 216 (530)
T COG0488 154 LSGGWRRRVALARAL------------LEEPDLLLLDEP-TNHLDLESIEWLEDY--LKRYPGTVIVVSHDRYFLDNV 216 (530)
T ss_pred cCHHHHHHHHHHHHH------------hcCCCEEEEcCC-CcccCHHHHHHHHHH--HHhCCCcEEEEeCCHHHHHHH
Confidence 445555555555555 566999999999 999999999999999 878767999999999998777
No 30
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=4.4e-20 Score=192.76 Aligned_cols=167 Identities=12% Similarity=0.022 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--e-cCCeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--L-TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~-~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+|||||||||++|+|+.+++.|.+...+..+.... . ....++.+.+.+.........+...........
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~- 98 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPK- 98 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCH-
Confidence 369999999999999999999999998887755443321100 0 011233333332211111111111110000000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++... ......++|||+.++..+|++++.+ |+
T Consensus 99 ~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LSgG~~qrv~la~al~~~------------p~ 144 (302)
T TIGR01188 99 DEAEERAEELLELFELGEA----------------------ADRPVGTYSGGMRRRLDIAASLIHQ------------PD 144 (302)
T ss_pred HHHHHHHHHHHHHcCChhH----------------------hCCchhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 0001112222333222110 1122234679999999999999655 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+.++..+.++ ..+.+.|.|||++||+++++..+
T Consensus 145 lllLDEP-t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~ 190 (302)
T TIGR01188 145 VLFLDEP-TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL 190 (302)
T ss_pred EEEEeCC-CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9999999 999999999999888 55555689999999999998765
No 31
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=6.3e-20 Score=181.43 Aligned_cols=166 Identities=19% Similarity=0.060 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+..+.... .... .++.+.+...++.. .....+..+. ....
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~-t~~~~l~~~~-~~~~ 105 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP-TVEEEVAFGL-ENLG 105 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC-cHHHHHHHHH-HHcC
Confidence 369999999999999999999999998887754443321110 0011 22333332111111 1111110000 0000
Q ss_pred cc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 LR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.. .....+..++..+++.. .. .+....+|||+.++..+|++++.+
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LSgG~~qrv~laral~~~----------- 152 (211)
T cd03225 106 LPEEEIEERVEEALELVGLEG--------------------LR--DRSPFTLSGGQKQRVAIAGVLAMD----------- 152 (211)
T ss_pred CCHHHHHHHHHHHHHHcCcHh--------------------hh--cCCcccCCHHHHHHHHHHHHHhcC-----------
Confidence 00 00011112222222111 11 112223579999999999999555
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+...+.|||+||||+.++..+
T Consensus 153 -p~llllDEP-t~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 153 -PDILLLDEP-TAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred -CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 44544588999999999998774
No 32
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.81 E-value=4.8e-20 Score=192.67 Aligned_cols=166 Identities=14% Similarity=0.057 Sum_probs=102.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--e-cCCeEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--L-TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~-~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
.+||+|||||||||||++|+|+..++.|.+...+.+..... . ....++.+.+++.........+..+...+.... .
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~-~ 113 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA-A 113 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCH-H
Confidence 69999999999999999999999998887755444332110 0 112334444443322111111111111111000 0
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..+++.+++.. . ..+....+|||+.++..+|++++.+ |++
T Consensus 114 ~~~~~~~~~l~~~~l~~--------------------~--~~~~~~~LS~G~~qrl~la~aL~~~------------P~l 159 (306)
T PRK13537 114 AARALVPPLLEFAKLEN--------------------K--ADAKVGELSGGMKRRLTLARALVND------------PDV 159 (306)
T ss_pred HHHHHHHHHHHHcCCch--------------------H--hcCchhhCCHHHHHHHHHHHHHhCC------------CCE
Confidence 00011122222222110 0 0112224678999999999988555 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+|||| |++||+.++..+.++ ..+.+.|.|||++||+++++..+
T Consensus 160 llLDEP-t~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~ 204 (306)
T PRK13537 160 LVLDEP-TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL 204 (306)
T ss_pred EEEeCC-CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 999999 999999999999988 56656689999999999999775
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6.5e-20 Score=183.45 Aligned_cols=167 Identities=17% Similarity=0.059 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE----EEecC-CeEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT----IFLTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~----~~~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.++|+|+||||||||+++|+|+..+..|.+...+..... ..+.+ -.++++.|...+-.. .....+..|.....
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g 109 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLG 109 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC-cHHHHHhhchhhcC
Confidence 4799999999999999999999999998887444433221 11111 123333332111111 01111111211100
Q ss_pred ccc-CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 443 QLR-EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 443 ~l~-~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
-.. +....+..++..+++..+ ..+....+||||.++.++|..+. .
T Consensus 110 ~~~~e~~~rv~~~l~~vgl~~~----------------------~~r~p~~LSGGqkqRvaIA~vLa------------~ 155 (235)
T COG1122 110 LPREEIEERVAEALELVGLEEL----------------------LDRPPFNLSGGQKQRVAIAGVLA------------M 155 (235)
T ss_pred CCHHHHHHHHHHHHHHcCchhh----------------------ccCCccccCCcceeeHHhhHHHH------------c
Confidence 000 111223333444333222 12233347899999999999994 4
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~ 570 (604)
.|++|||||| |++||+..+..+.++ ..+... |.|||++|||++.+..+
T Consensus 156 ~P~iliLDEP-ta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ 205 (235)
T COG1122 156 GPEILLLDEP-TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEY 205 (235)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhh
Confidence 5999999999 999999999999988 666655 68999999999999885
No 34
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=1.9e-20 Score=182.70 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCC-ChhhhHhhc-cccccc-cc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKV-PKPLQVLMG-SFPIAQ-LR 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~-~~~~~~l~g-~~~i~~-l~ 445 (604)
.++|+|++|+||||||++|.|+.+|+.|.+...+.++....-.....+...-|++|+... -..+.++.. .+|+.. ..
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~ 115 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhcc
Confidence 589999999999999999999999999999877776544322111111112233332210 000000000 011100 00
Q ss_pred CchHHHHHHH----HhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 446 EPYSTVQYLA----ERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 446 ~~~~~i~~l~----~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
-+...+..+. +.+++... ....... .+|||+..+.++||++ +.
T Consensus 116 lp~~~i~~lv~~KL~~VGL~~~-------------------~~~~~Ps--ELSGGM~KRvaLARAi------------al 162 (263)
T COG1127 116 LPESLIRELVLMKLELVGLRGA-------------------AADLYPS--ELSGGMRKRVALARAI------------AL 162 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCChh-------------------hhhhCch--hhcchHHHHHHHHHHH------------hc
Confidence 1111111111 11111100 0111111 2568888888888888 44
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
+|+++++||| |+|||+.+...+.++ ..++ ..|.|+||||||+..+..+ ....+|....
T Consensus 163 dPell~~DEP-tsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 163 DPELLFLDEP-TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred CCCEEEecCC-CCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence 5999999999 999999998888888 5554 4699999999999999877 2344444443
No 35
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.80 E-value=6.8e-20 Score=182.11 Aligned_cols=165 Identities=14% Similarity=0.077 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-------ecC-CeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-------LTD-NIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-------~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... ... ..++.+.+.+.........+.......
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 369999999999999999999999998888755443332111 011 123334343322111111111100000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++.. .+ .+...++|||+.++..+|++++.+
T Consensus 111 ~~~~-~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrv~la~al~~~--------- 158 (218)
T cd03255 111 GVPK-KERRERAEELLERVGLGD--------------------RL--NHYPSELSGGQQQRVAIARALAND--------- 158 (218)
T ss_pred CCCH-HHHHHHHHHHHHHcCCch--------------------hh--hcChhhcCHHHHHHHHHHHHHccC---------
Confidence 0000 000011222222222211 01 112234678999999999998554
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGK 568 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~ 568 (604)
|++|||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++.
T Consensus 159 ---p~lllLDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 159 ---PKIILADEP-TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred ---CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 999999999 999999999999888 45544 5899999999999876
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.80 E-value=5.6e-20 Score=194.54 Aligned_cols=167 Identities=17% Similarity=0.106 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCC-eEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+|||||||||++|+|+..++.|.+...+...... ..... .++.+.+.+.........+..+...+....
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~- 146 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMST- 146 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCH-
Confidence 46999999999999999999999999988776554433211 01111 233344433222111111111111111000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++.. . .....-.+|||+.++..+|++++.+ |+
T Consensus 147 ~~~~~~~~~ll~~~~L~~--------------------~--~~~~~~~LS~G~kqrv~lA~aL~~~------------P~ 192 (340)
T PRK13536 147 REIEAVIPSLLEFARLES--------------------K--ADARVSDLSGGMKRRLTLARALIND------------PQ 192 (340)
T ss_pred HHHHHHHHHHHHHcCCch--------------------h--hCCChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 000011112222222111 0 0112223578999999999998655 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+.++..|.++ ..+.+.|.|||++||+++++..+
T Consensus 193 lLiLDEP-t~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~ 238 (340)
T PRK13536 193 LLILDEP-TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL 238 (340)
T ss_pred EEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9999999 999999999999998 55555689999999999999775
No 37
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.9e-20 Score=191.11 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec-CCe-EEecCCCccCCCCCChhhhHhhcccccccc--
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT-DNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL-- 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~-~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l-- 444 (604)
.++|+|||||||||||++|+|+..++.|.+...++.+..+... .++ .+++...++....+ ...+..+ +...
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV--~~Niaf~---Lk~~~~ 105 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTV--YENIAFG---LKLRGV 105 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcH--HHHhhhh---hhhCCC
Confidence 5889999999999999999999999999998777766543222 223 33444443322221 1111111 1100
Q ss_pred --cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 445 --REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 445 --~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.+....+..+++.+++..++ .++.. .+||||.|++++||+|+++
T Consensus 106 ~k~ei~~rV~eva~~L~l~~lL--------------------~r~P~--~LSGGQrQRVAlaRAlVr~------------ 151 (338)
T COG3839 106 PKAEIDKRVKEVAKLLGLEHLL--------------------NRKPL--QLSGGQRQRVALARALVRK------------ 151 (338)
T ss_pred chHHHHHHHHHHHHHcCChhHH--------------------hcCcc--cCChhhHHHHHHHHHHhcC------------
Confidence 11122333444444433322 22222 3579999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| .++||...+..+... .. .++.+.|+|+||||..||+.+
T Consensus 152 P~v~L~DEP-lSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtl 200 (338)
T COG3839 152 PKVFLLDEP-LSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL 200 (338)
T ss_pred CCEEEecCc-hhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhh
Confidence 999999999 999998887766655 33 345689999999999999887
No 38
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=8.3e-20 Score=179.90 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-eEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-.++|+|+|||||||||++|+|+.++..|.+...+..+........ .++.+.+...+... .....+..+. .. ...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~-tv~e~l~~~~-~~--~~~ 102 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTD-SVREELLLGL-KE--LDA 102 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhc-cHHHHHhhhh-hh--cCc
Confidence 3699999999999999999999999988877544433211000111 12233322111110 1111110000 00 000
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..+++.+++.... .+....+|||+.++..+|++++.+ |+++
T Consensus 103 ~~~~~~~~l~~~~l~~~~----------------------~~~~~~LS~G~~qrv~laral~~~------------p~ll 148 (205)
T cd03226 103 GNEQAETVLKDLDLYALK----------------------ERHPLSLSGGQKQRLAIAAALLSG------------KDLL 148 (205)
T ss_pred cHHHHHHHHHHcCCchhc----------------------CCCchhCCHHHHHHHHHHHHHHhC------------CCEE
Confidence 111223333333221110 111224679999999999999665 9999
Q ss_pred cccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |++||+.++..+.++ ..+.+.+.|||+||||++++..+
T Consensus 149 llDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 149 IFDEP-TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred EEeCC-CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 99999 999999999999888 45545589999999999998765
No 39
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.80 E-value=9.2e-20 Score=180.64 Aligned_cols=167 Identities=14% Similarity=0.042 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+..................
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 369999999999999999999999988887754443332110 0111 223333332211111111100000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... ......+..++..+++.. .. .+....+|||+.++..+|++++.+
T Consensus 109 ~~~-~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrl~la~al~~~---------- 155 (214)
T TIGR02673 109 KKE-REIQRRVGAALRQVGLEH--------------------KA--DAFPEQLSGGEQQRVAIARAIVNS---------- 155 (214)
T ss_pred CCH-HHHHHHHHHHHHHcCChh--------------------hh--hCChhhCCHHHHHHHHHHHHHhCC----------
Confidence 000 000011122222222110 00 112234678999999999998555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+.+.|||+||||++++..+
T Consensus 156 --p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 203 (214)
T TIGR02673 156 --PPLLLADEP-TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV 203 (214)
T ss_pred --CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 45545689999999999998875
No 40
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.80 E-value=9.2e-20 Score=180.61 Aligned_cols=166 Identities=19% Similarity=0.094 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-eEEecCCCccCCCCCChhhhHhhccccccc---
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ--- 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~--- 443 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.. .... .++.+.+.+...........+..+......
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR 103 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH--HHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence 3699999999999999999999999988877544432210 0111 222333322100001111111111100000
Q ss_pred -c-cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 -L-REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 -l-~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
. ......+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LSgG~~qrv~la~al~~~----------- 150 (213)
T cd03235 104 RLSKADKAKVDEALERVGLSEL--------------------A--DRQIGELSGGQQQRVLLARALVQD----------- 150 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH--------------------H--hCCcccCCHHHHHHHHHHHHHHcC-----------
Confidence 0 0001122223333222111 1 112234679999999999999655
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+.+.|||+||||++++..+
T Consensus 151 -p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~ 198 (213)
T cd03235 151 -PDLLLLDEP-FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198 (213)
T ss_pred -CCEEEEeCC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 45544689999999999998775
No 41
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=8.1e-20 Score=183.67 Aligned_cols=177 Identities=17% Similarity=0.112 Sum_probs=106.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccc---eeEEEEec-CC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK---HFQTIFLT-DN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~---~~q~~~~~-~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.++|+|||||||||||++|+|+..|+.|.+...+. +.+..... .. .++++...+++... ....+..|.--...
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hmt--Va~NIAFGl~~~~~ 107 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMT--VADNIAFGLKVRKE 107 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccch--HHhhhhhccccccc
Confidence 59999999999999999999999999998876655 32221111 11 12222222221111 11111111100000
Q ss_pred ---ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 444 ---LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 444 ---l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
-......+..++..+.+..+ +. +--..+||||.|++++||++.-+
T Consensus 108 ~p~~~~~r~rv~elL~lvqL~~l---------------------a~-ryP~QLSGGQrQRVALARALA~e---------- 155 (345)
T COG1118 108 RPSEAEIRARVEELLRLVQLEGL---------------------AD-RYPAQLSGGQRQRVALARALAVE---------- 155 (345)
T ss_pred CCChhhHHHHHHHHHHHhcccch---------------------hh-cCchhcChHHHHHHHHHHHhhcC----------
Confidence 00011122222222222111 11 11234679999999999999444
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhhh----hhccCCCcccC
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNVK----RKHKGEETEED 582 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~~ 582 (604)
|++|||||| +++||...+..|... .. ....|.|+|+||||.+|+.++. +-.+|.+....
T Consensus 156 --P~vLLLDEP-f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 156 --PKVLLLDEP-FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred --CCeEeecCC-chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeC
Confidence 999999999 999998887777766 33 4456999999999999998884 44566555443
No 42
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.80 E-value=8.6e-20 Score=180.79 Aligned_cols=167 Identities=15% Similarity=0.066 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------e-cCCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------L-TDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~-~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... . ....++.+.+.+..................
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 369999999999999999999999988887654433321110 0 011233333332211111111110000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
.. .......+..++..+++... . ......+|||+.++..+|++++.+
T Consensus 108 ~~-~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qrv~laral~~~---------- 154 (214)
T cd03292 108 VP-PREIRKRVPAALELVGLSHK--------------------H--RALPAELSGGEQQRVAIARAIVNS---------- 154 (214)
T ss_pred CC-HHHHHHHHHHHHHHcCCHHH--------------------h--hCChhhcCHHHHHHHHHHHHHHcC----------
Confidence 00 00000112222222222110 0 111224678999999999999555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+.+.|||+||||.+++..+
T Consensus 155 --p~llllDEP-t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~ 202 (214)
T cd03292 155 --PTILIADEP-TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202 (214)
T ss_pred --CCEEEEeCC-CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999887 55555589999999999998765
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=8.5e-20 Score=180.85 Aligned_cols=167 Identities=16% Similarity=0.074 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCC-eEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+.........+........... .
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~-~ 105 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK-A 105 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH-H
Confidence 369999999999999999999999998887754443321110 0111 122232222111111010000000000000 0
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++.. .. .+....+|||+.++..+|++++.+ |++
T Consensus 106 ~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LSgG~~qrl~la~al~~~------------p~~ 151 (213)
T cd03259 106 EIRARVRELLELVGLEG--------------------LL--NRYPHELSGGQQQRVALARALARE------------PSL 151 (213)
T ss_pred HHHHHHHHHHHHcCChh--------------------hh--hcChhhCCHHHHHHHHHHHHHhcC------------CCE
Confidence 00011112222221110 00 112234678999999999999555 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
+||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+
T Consensus 152 lllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 197 (213)
T cd03259 152 LLLDEP-LSALDAKLREELREELKELQRELGITTIYVTHDQEEALAL 197 (213)
T ss_pred EEEcCC-cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence 999999 999999999999888 44443 489999999999987665
No 44
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.80 E-value=1e-19 Score=180.80 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCC-eEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+.................... .
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~ 110 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK-G 110 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC-H
Confidence 369999999999999999999999998887755443322100 0111 22333332221111111111100000000 0
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++.. .+. .....+|||+.++..+|++++.+ |+
T Consensus 111 ~~~~~~~~~~l~~~~l~~--------------------~~~--~~~~~LS~G~~qrv~laral~~~------------p~ 156 (218)
T cd03266 111 DELTARLEELADRLGMEE--------------------LLD--RRVGGFSTGMRQKVAIARALVHD------------PP 156 (218)
T ss_pred HHHHHHHHHHHHHcCCHH--------------------HHh--hhhhhcCHHHHHHHHHHHHHhcC------------CC
Confidence 000111222222222211 111 12223568999999999998555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+.++..+.++ ..+.+.+.|||+||||+.++..+
T Consensus 157 illlDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 202 (218)
T cd03266 157 VLLLDEP-TTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERL 202 (218)
T ss_pred EEEEcCC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 9999999 999999999999888 45555689999999999988765
No 45
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.80 E-value=8.4e-20 Score=181.82 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--------cCCeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--------TDNIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--------~~~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.++|+|+|||||||||++|+|+..+..|.+...+..+..... ....++.+.+.+.................
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 3699999999999999999999999988877544433221100 01122333333221111111110000000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++.. .. .+...++|||+.++..+|++++.+
T Consensus 112 ~~~~-~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrv~laral~~~--------- 159 (221)
T TIGR02211 112 KKSV-KEAKERAYEMLEKVGLEH--------------------RI--NHRPSELSGGERQRVAIARALVNQ--------- 159 (221)
T ss_pred CCCH-HHHHHHHHHHHHHcCChh--------------------hh--hCChhhCCHHHHHHHHHHHHHhCC---------
Confidence 0000 000111122222222211 01 112234679999999999999555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~ 571 (604)
|++|||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+.
T Consensus 160 ---p~illlDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d 209 (221)
T TIGR02211 160 ---PSLVLADEP-TGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLD 209 (221)
T ss_pred ---CCEEEEeCC-CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcC
Confidence 999999999 999999999999887 44443 4899999999999886554
No 46
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.80 E-value=1.3e-19 Score=181.87 Aligned_cols=175 Identities=17% Similarity=0.081 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhh-ccccccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLM-GSFPIAQLR- 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~-g~~~i~~l~- 445 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+..... ...++.+.+++.........+.... ..++ ...
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~ 88 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-DRMVVFQNYSLLPWLTVRENIALAVDRVLP--DLSK 88 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hheEEecCcccCCCCCHHHHHHHHHHhccc--CCCH
Confidence 3699999999999999999999999988877554433221100 1123444444322111111111100 0000 000
Q ss_pred -CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 -EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 -~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+..++..+++...+ ......+|||+.++..+|++++.+ |+
T Consensus 89 ~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~LSgG~~qrv~la~al~~~------------p~ 134 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEAA----------------------DKRPGQLSGGMKQRVAIARALSIR------------PK 134 (230)
T ss_pred HHHHHHHHHHHHHcCCHHHH----------------------cCChhhCCHHHHHHHHHHHHHHcC------------CC
Confidence 0001122223332221110 112234679999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
++||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+ ....+|....
T Consensus 135 lllLDEP-t~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 135 VLLLDEP-FGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred EEEEcCC-CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 9999999 999999999999887 44433 488999999999998765 2334565543
No 47
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.80 E-value=1.1e-19 Score=189.99 Aligned_cols=167 Identities=16% Similarity=0.064 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCC-eEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+|||||||||++|+|+..++.|.+...+....... .... .++.+.+.+.........+...........
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~- 109 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST- 109 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCH-
Confidence 469999999999999999999999998887754443321100 0111 233333332211111111111111000000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++... . .+....+|||+.++..+|++++.+ |+
T Consensus 110 ~~~~~~~~~ll~~~~l~~~--------------------~--~~~~~~LSgG~~qrv~la~al~~~------------p~ 155 (303)
T TIGR01288 110 REIEAVIPSLLEFARLESK--------------------A--DVRVALLSGGMKRRLTLARALIND------------PQ 155 (303)
T ss_pred HHHHHHHHHHHHHCCChhH--------------------h--cCchhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 0000111122222221110 0 111224678999999999998555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 156 lllLDEP-t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~ 201 (303)
T TIGR01288 156 LLILDEP-TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL 201 (303)
T ss_pred EEEEeCC-CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9999999 999999999999888 55555689999999999998765
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.4e-19 Score=180.24 Aligned_cols=165 Identities=15% Similarity=0.023 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-eEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+..+.. .... .++.+.+.+.........+........... ..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~-~~ 107 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK-AE 107 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCH-HH
Confidence 3699999999999999999999999888876544433221 1112 233333332211111111111000000000 00
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..++..+++... . ......+|||+.++..+|++++.+ |+++
T Consensus 108 ~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LSgG~~qrl~la~al~~~------------p~ll 153 (220)
T cd03293 108 ARERAEELLELVGLSGF--------------------E--NAYPHQLSGGMRQRVALARALAVD------------PDVL 153 (220)
T ss_pred HHHHHHHHHHHcCChhh--------------------h--hCCcccCCHHHHHHHHHHHHHHcC------------CCEE
Confidence 01112222222222111 1 111223679999999999999665 9999
Q ss_pred cccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |++||+.++..+.++ ..+. +.+.|||+||||++++..+
T Consensus 154 lLDEP-t~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~ 198 (220)
T cd03293 154 LLDEP-FSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFL 198 (220)
T ss_pred EECCC-CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence 99999 999999999999887 4443 3588999999999988665
No 49
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.1e-19 Score=179.71 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCe-EEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.. .....+ ++.+.+.+..................... ..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~-~~ 104 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKK-EE 104 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCCh-HH
Confidence 3699999999999999999999999888876544332211 001111 22233322111111111110000000000 00
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..++..+++.. .. ......+|||+.++..+|++++.+ |+++
T Consensus 105 ~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrl~la~al~~~------------p~~l 150 (210)
T cd03269 105 ARRRIDEWLERLELSE--------------------YA--NKRVEELSKGNQQKVQFIAAVIHD------------PELL 150 (210)
T ss_pred HHHHHHHHHHHcCChH--------------------HH--hCcHhhCCHHHHHHHHHHHHHhcC------------CCEE
Confidence 0011111222221110 00 112234578888999999888555 9999
Q ss_pred cccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |++||+.++..+.++ ..+.+.+.|||+||||.+++..+
T Consensus 151 llDEP-~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~ 194 (210)
T cd03269 151 ILDEP-FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL 194 (210)
T ss_pred EEeCC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 99999 999999999999888 44545588999999999998765
No 50
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=1.3e-19 Score=189.62 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC-C-eEEecCCCccCCCCCChhhhHhhccccccccc-
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD-N-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR- 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~-~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~- 445 (604)
-++|+|||||||||||++|+|+..|+.|.+...++.+..+.... . ..+++...+ ||.. +....+..|........
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL-FPHl-tV~~NVafGLk~~~~~~~ 110 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYAL-FPHM-TVEENVAFGLKVRKKLKK 110 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCccc-CCCC-cHHHHhhhhhhhcCCCCH
Confidence 47899999999999999999999999998877766654432211 1 122222222 2221 12222222211000000
Q ss_pred -CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 -EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 -~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
+....+..++..+++.. ++. +.-..+||||.|++++||+|... |+
T Consensus 111 ~~i~~rv~e~L~lV~L~~---------------------~~~-R~p~qLSGGQqQRVALARAL~~~------------P~ 156 (352)
T COG3842 111 AEIKARVEEALELVGLEG---------------------FAD-RKPHQLSGGQQQRVALARALVPE------------PK 156 (352)
T ss_pred HHHHHHHHHHHHHcCchh---------------------hhh-hChhhhChHHHHHHHHHHHhhcC------------cc
Confidence 00112233333332221 111 11223679999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| .++||...+..++.. +. .++.|.|+|+||||.+||..+
T Consensus 157 vLLLDEP-lSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~m 203 (352)
T COG3842 157 VLLLDEP-LSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAM 203 (352)
T ss_pred hhhhcCc-ccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhh
Confidence 9999999 999998887777655 32 456799999999999999877
No 51
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=1.3e-19 Score=179.34 Aligned_cols=167 Identities=13% Similarity=0.000 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--E----ecCCeEEecCCCccCCCCCChhhhHhh-cccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--F----LTDNIRLCDCPGLVFPSKVPKPLQVLM-GSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~----~~~~~~l~D~pGl~~p~~~~~~~~~l~-g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+... . .....++.+.+.+.............. ....
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 106 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG 106 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 36999999999999999999999999888775444332110 0 011123333333221111111110000 0000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... ......+..++..+++.. .. .+...++|||+.++..+|++++.+
T Consensus 107 ~~~-~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrv~la~al~~~---------- 153 (213)
T cd03262 107 MSK-AEAEERALELLEKVGLAD--------------------KA--DAYPAQLSGGQQQRVAIARALAMN---------- 153 (213)
T ss_pred CCH-HHHHHHHHHHHHHcCCHh--------------------Hh--hhCccccCHHHHHHHHHHHHHhcC----------
Confidence 000 000011112222222111 01 112234578999999999998555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+.|.|||++|||++++..+
T Consensus 154 --p~llllDEP-~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 154 --PKVMLFDEP-TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred --CCEEEEeCC-ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 55555689999999999998764
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.79 E-value=2.2e-19 Score=180.10 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCCe-EEecCCCccCCC-CCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDNI-RLCDCPGLVFPS-KVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~~-~l~D~pGl~~p~-~~~~~~~~l~g~~~i 441 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+....... ....+ ++.+.+.+ ++. ...............
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~-~~~~tv~~~l~~~~~~~~~ 105 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASI-FRKLTVEENILAVLEIRGL 105 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccc-cccCcHHHHHHHHHHhcCC
Confidence 369999999999999999999999998887654443321110 00112 22232322 111 111111100000000
Q ss_pred ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 442 AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 442 ~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.. ......+..++..+++. ... ......+|||+.++..+|++++.+
T Consensus 106 ~~-~~~~~~~~~~l~~~~l~--------------------~~~--~~~~~~LS~G~~qrl~la~al~~~----------- 151 (232)
T cd03218 106 SK-KEREEKLEELLEEFHIT--------------------HLR--KSKASSLSGGERRRVEIARALATN----------- 151 (232)
T ss_pred CH-HHHHHHHHHHHHHcCCh--------------------hhh--hCChhhCCHHHHHHHHHHHHHhcC-----------
Confidence 00 00000111122221111 001 122234678999999999999555
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|++|||||| |++||..++..+.++ ..+.+.+.|||+||||++++..+ ....+|...
T Consensus 152 -p~llllDEP-t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 152 -PKFLLLDEP-FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred -CCEEEecCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999999 999999999998887 45555689999999999988765 233455544
No 53
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.79 E-value=1.4e-19 Score=181.96 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=57.0
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 143 ~LSgG~~qrv~la~al~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 209 (236)
T cd03219 143 ELSYGQQRRLEIARALATD------------PKLLLLDEP-AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 4678999999999999555 999999999 999999999999888 44554689999999999998765
No 54
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.79 E-value=2.2e-19 Score=177.26 Aligned_cols=163 Identities=17% Similarity=0.124 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-EecCCe-EEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-FLTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-~~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+... .....+ ++.+.+.+ ++.. .....+...... ...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~-~~~~-tv~e~l~~~~~~-~~~- 102 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGF-YPNL-TARENLRLLARL-LGI- 102 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCcc-CccC-cHHHHHHHHHHh-cCC-
Confidence 46899999999999999999999998888775544332111 001111 22222222 1111 111111000000 000
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
....+..++..+++... .. +....+|||+.++..+|++++.+ |++
T Consensus 103 -~~~~~~~~l~~~~l~~~--------------------~~--~~~~~LS~G~~qrv~la~al~~~------------p~l 147 (208)
T cd03268 103 -RKKRIDEVLDVVGLKDS--------------------AK--KKVKGFSLGMKQRLGIALALLGN------------PDL 147 (208)
T ss_pred -cHHHHHHHHHHcCCHHH--------------------Hh--hhHhhCCHHHHHHHHHHHHHhcC------------CCE
Confidence 11122233333222111 11 11223568999999999988555 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+||||| |++||+.++..+..+ ..+.+.+.||||||||++++..+
T Consensus 148 lllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 192 (208)
T cd03268 148 LILDEP-TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV 192 (208)
T ss_pred EEECCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 999999 999999999999888 44555689999999999998765
No 55
>PRK10908 cell division protein FtsE; Provisional
Probab=99.79 E-value=1.7e-19 Score=179.85 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.... .... .++.+.+.+.+.......+........
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG 108 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence 469999999999999999999999998887755444332210 0111 233333332221111111100000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... ......+..++..+++.. .. .+....+|||+.++..+|++++.+
T Consensus 109 ~~~-~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrv~laral~~~---------- 155 (222)
T PRK10908 109 ASG-DDIRRRVSAALDKVGLLD--------------------KA--KNFPIQLSGGEQQRVGIARAVVNK---------- 155 (222)
T ss_pred CCH-HHHHHHHHHHHHHcCChh--------------------hh--hCCchhCCHHHHHHHHHHHHHHcC----------
Confidence 000 000011112222222111 01 112234679999999999999655
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+.+.|||+||||++++..+
T Consensus 156 --p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (222)
T PRK10908 156 --PAVLLADEP-TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR 203 (222)
T ss_pred --CCEEEEeCC-CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999888887 44545589999999999998765
No 56
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.8e-19 Score=181.16 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-------cCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-------TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-------~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
.++|+|+||||||||+++|+|+.++..|.+...+..+..... ... .++.+.+.+ ++.. .....+.....
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~-~~~~-tv~e~l~~~~~- 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL-LPDF-TALENVAMPLL- 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc-CCCC-CHHHHHHHHHH-
Confidence 699999999999999999999999988877554433221110 011 233333332 2221 11111110000
Q ss_pred ccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 441 IAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 441 i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
..... .....+..++..+++... . ......+|||+.++..+|++++.+
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~gl~~~--------------------~--~~~~~~LSgG~~qrl~la~al~~~-------- 163 (233)
T PRK11629 114 IGKKKPAEINSRALEMLAAVGLEHR--------------------A--NHRPSELSGGERQRVAIARALVNN-------- 163 (233)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchh--------------------h--hCChhhCCHHHHHHHHHHHHHhcC--------
Confidence 00000 001112223333222111 0 111223678999999999999555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~ 571 (604)
|+++||||| |++||+.++..+.++ ..+.. .|.|||+||||++++..+.
T Consensus 164 ----p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~ 213 (233)
T PRK11629 164 ----PRLVLADEP-TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS 213 (233)
T ss_pred ----CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC
Confidence 999999999 999999999999888 44443 5899999999999988764
No 57
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.8e-19 Score=170.47 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=59.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
+.+||||.|+..+||++ +.+|++|||||| |++||+.+...+.++ .+|+ ...|||||||++..|.+
T Consensus 148 ~~LSGGQQQRLcIARal------------Av~PeVlLmDEP-tSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaR 213 (253)
T COG1117 148 LGLSGGQQQRLCIARAL------------AVKPEVLLMDEP-TSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAAR 213 (253)
T ss_pred cCCChhHHHHHHHHHHH------------hcCCcEEEecCc-ccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHH
Confidence 44789999999999999 556999999999 999999999888888 4555 57899999999999998
Q ss_pred hh
Q psy3589 570 VK 571 (604)
Q Consensus 570 ~~ 571 (604)
+.
T Consensus 214 vS 215 (253)
T COG1117 214 VS 215 (253)
T ss_pred Hh
Confidence 84
No 58
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.1e-19 Score=183.12 Aligned_cols=166 Identities=16% Similarity=0.068 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||||||||+++|+|+.+++.|.+...+..+.... ....++.+.+.+.........+........... ...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~ 105 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK-MQR 105 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCH-HHH
Confidence 369999999999999999999999998887754443321100 011223333332211111111100000000000 000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++... . .+....+|||+.++..+|++++.+ |++||
T Consensus 106 ~~~~~~~l~~~gl~~~--------------------~--~~~~~~LSgGq~qrl~laral~~~------------p~lll 151 (255)
T PRK11248 106 LEIAHQMLKKVGLEGA--------------------E--KRYIWQLSGGQRQRVGIARALAAN------------PQLLL 151 (255)
T ss_pred HHHHHHHHHHcCChhH--------------------h--hCChhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 0112222333222111 0 112234679999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+.++..+.++ ..+ ++.|.|||+||||++++..+
T Consensus 152 LDEP-t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~ 195 (255)
T PRK11248 152 LDEP-FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM 195 (255)
T ss_pred EeCC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 9999 999999999999888 444 33489999999999998765
No 59
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.79 E-value=1.7e-19 Score=175.55 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-----EecCC-eEEecCCC-ccCCCCCChhhhHhhcc--c
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-----FLTDN-IRLCDCPG-LVFPSKVPKPLQVLMGS--F 439 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-----~~~~~-~~l~D~pG-l~~p~~~~~~~~~l~g~--~ 439 (604)
.+||+|+||||||||+++|+|+.++..|.+...+..+... ..... .++.+.+. ..++. .....+..+. .
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~--tv~~nl~~~~~~~ 97 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNL 97 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc--cHHHHHHHHHHHc
Confidence 6899999999999999999999999888775444332100 00111 12223221 11111 1111111000 0
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++.. .. .+....+|||+.++..+|++++.+
T Consensus 98 ~~~~-~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrv~laral~~~--------- 145 (190)
T TIGR01166 98 GLSE-AEVERRVREALTAVGASG--------------------LR--ERPTHCLSGGEKKRVAIAGAVAMR--------- 145 (190)
T ss_pred CCCH-HHHHHHHHHHHHHcCchh--------------------hh--hCChhhCCHHHHHHHHHHHHHhcC---------
Confidence 0000 000011122222222211 01 112234678999999999999555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
|+++||||| |++||+.++..+.++ ..+.+.|.|||+||||++++
T Consensus 146 ---p~llllDEP-t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 146 ---PDVLLLDEP-TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred ---CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999 999999999999888 45555589999999998764
No 60
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.3e-19 Score=181.00 Aligned_cols=168 Identities=15% Similarity=0.021 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCeEEecCCCccCCCCCChhhhHhhccccc-c--
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPI-A-- 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i-~-- 442 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... .....++.+.|.+.........+......... .
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 369999999999999999999999998887754443321110 01112333333332111111111100000000 0
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
........+..++..+++.. .. ......+|||+.++..+|++++.+
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrl~la~al~~~------------ 154 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDW--------------------LA--DRYPAQLSGGQRQRVALARALAVE------------ 154 (239)
T ss_pred CHHHHHHHHHHHHHHcCChh--------------------hh--hcChhhCCHHHHHHHHHHHHHhcC------------
Confidence 00000011122222222111 00 112234679999999999999555
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+
T Consensus 155 p~llllDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~ 203 (239)
T cd03296 155 PKVLLLDEP-FGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEV 203 (239)
T ss_pred CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 44444 488999999999987664
No 61
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=2.6e-19 Score=176.33 Aligned_cols=165 Identities=11% Similarity=0.038 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCe-EEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... ....+ ++.+.+.+.................. .
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~ 104 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c
Confidence 369999999999999999999999998887755443322110 01111 22222222111111111111000000 0
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+..++..+++.... ......+|||+.++..+|++++.+ |+
T Consensus 105 -~~~~~~~~~l~~~gl~~~~----------------------~~~~~~LS~G~~qrl~la~al~~~------------p~ 149 (204)
T PRK13538 105 -GDDEALWEALAQVGLAGFE----------------------DVPVRQLSAGQQRRVALARLWLTR------------AP 149 (204)
T ss_pred -cHHHHHHHHHHHcCCHHHh----------------------hCChhhcCHHHHHHHHHHHHHhcC------------CC
Confidence 0112223333333321110 112233678999999999998555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+++|||| |++||+.++..+.++ ..+.+.+.|||+||||..++..+.
T Consensus 150 llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 150 LWILDEP-FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred EEEEeCC-CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCC
Confidence 9999999 999999999999887 444455889999999999987653
No 62
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.79 E-value=1.6e-19 Score=190.94 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.... .... .++.+.+.+.....+............
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC
Confidence 359999999999999999999999999998765554432211 0111 223333332211111111110000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
.. .......+..+++.+++.... .+....+|||+.++..+||+++.+
T Consensus 112 ~~-~~~~~~~v~e~l~~vgL~~~~----------------------~~~~~~LSgGqkQRV~IARAL~~~---------- 158 (343)
T TIGR02314 112 TP-KDEIKRKVTELLALVGLGDKH----------------------DSYPSNLSGGQKQRVAIARALASN---------- 158 (343)
T ss_pred CC-HHHHHHHHHHHHHHcCCchhh----------------------hCChhhCCHHHHHHHHHHHHHHhC----------
Confidence 00 000011122233333221110 112234679999999999999666
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.+...+.++ ..+.+ .|.|||+||||++++..+
T Consensus 159 --P~iLLlDEP-ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~ 207 (343)
T TIGR02314 159 --PKVLLCDEA-TSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI 207 (343)
T ss_pred --CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999887 55544 589999999999999775
No 63
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.1e-19 Score=179.04 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCCe-EEecCCCccCCCC-CChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDNI-RLCDCPGLVFPSK-VPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~~-~l~D~pGl~~p~~-~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+... .....+ ++.+.+.+ ++.. ....+...........
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-~~~~tv~~~l~~~~~~~~~~~ 105 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSV-DDELTGWENLYIHARLYGVPG 105 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccc-cccCcHHHHHHHHHHHcCCCH
Confidence 36999999999999999999999998888765433222110 000111 22222222 1111 1011100000000000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+..++..+++... + ......+|||+.++..+|++++.+ |
T Consensus 106 -~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qr~~la~al~~~------------p 150 (220)
T cd03265 106 -AERRERIDELLDFVGLLEA--------------------A--DRLVKTYSGGMRRRLEIARSLVHR------------P 150 (220)
T ss_pred -HHHHHHHHHHHHHcCCHHH--------------------h--hCChhhCCHHHHHHHHHHHHHhcC------------C
Confidence 0000112222222222110 0 112234678999999999998555 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
+++||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+
T Consensus 151 ~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 198 (220)
T cd03265 151 EVLFLDEP-TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQL 198 (220)
T ss_pred CEEEEcCC-ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 99999999 999999999998887 44444 488999999999998765
No 64
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.6e-19 Score=177.08 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCC-eEEecCCCccCCC-CCChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDN-IRLCDCPGLVFPS-KVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~-~~l~D~pGl~~p~-~~~~~~~~l~g~~~i~~l 444 (604)
.++|+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+ ++. .....+...........
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-~~~~tv~~~l~~~~~~~~~~~- 104 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV-YPNFTVREFLDYIAWLKGIPS- 104 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcc-cccCCHHHHHHHHHHHhCCCH-
Confidence 79999999999999999999999998887754443321110 0111 122333322 221 11111110000000000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++... + ......+|||+.++..+|++++.+ |+
T Consensus 105 ~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qrv~la~al~~~------------p~ 150 (211)
T cd03264 105 KEVKARVDEVLELVNLGDR--------------------A--KKKIGSLSGGMRRRVGIAQALVGD------------PS 150 (211)
T ss_pred HHHHHHHHHHHHHCCCHHH--------------------H--hCchhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 0001112222222222111 0 112234678999999999998555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 151 llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~ 195 (211)
T cd03264 151 ILIVDEP-TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESL 195 (211)
T ss_pred EEEEcCC-cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHh
Confidence 9999999 999999999999888 44444 58999999999998764
No 65
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.79 E-value=3.5e-19 Score=177.45 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=57.0
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+...+.||||||||++++..+
T Consensus 132 ~LS~G~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 132 TLSGGEQQMLAIARALMSR------------PKLLLLDEP-SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred hCCHHHHHHHHHHHHHhcC------------CCEEEECCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 45555689999999999998765
No 66
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.79 E-value=1.1e-18 Score=176.59 Aligned_cols=178 Identities=23% Similarity=0.258 Sum_probs=127.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhc--cCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeeccCc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTG--TLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSYPTY 270 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~~~~ 270 (604)
.+..+|.+++|+|+++|..++.. +.+|+.. ..+.++|||+||+||.+.... ..|.++|... +..++.+||+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~--g~~v~~~SAk--- 106 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNI--GYQVLMTSSK--- 106 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHC--CCeEEEEecC---
Confidence 47789999999999999865443 6666642 357899999999999865544 4788888764 4678888886
Q ss_pred ccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhh
Q psy3589 271 NLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIEL 350 (604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (604)
++.|+++|.+.+..
T Consensus 107 -------------------------tg~gi~eLf~~l~~----------------------------------------- 120 (245)
T TIGR00157 107 -------------------------NQDGLKELIEALQN----------------------------------------- 120 (245)
T ss_pred -------------------------CchhHHHHHhhhcC-----------------------------------------
Confidence 45566666543311
Q ss_pred hhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCCCcc
Q psy3589 351 KKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCPGLV 423 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~pGl~ 423 (604)
..++++|+||||||||||.|.|.....+|.+++ +|++.+.+.+ ...+++||||+.
T Consensus 121 -----------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~ 182 (245)
T TIGR00157 121 -----------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFN 182 (245)
T ss_pred -----------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCcc
Confidence 268899999999999999999988777776653 6677777777 567999999998
Q ss_pred CCCCCChhhhHhhcccccccccCchHHHHHHHHhcCHHHHhhcCCCC
Q psy3589 424 FPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPD 470 (604)
Q Consensus 424 ~p~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~ 470 (604)
...........+... +..+..+...|.+..+.|...|.
T Consensus 183 ~~~l~~~~~~~~~~~---------f~e~~~~~~~C~f~~C~H~~ep~ 220 (245)
T TIGR00157 183 EFGLWHLEPEQLTQG---------FVEFRDYLGECKFRDCLHQSEPG 220 (245)
T ss_pred ccCCCCCCHHHHHHh---------CHHHHHHhCCCCCCCCccCCCCC
Confidence 655432221122222 23455566778787888776664
No 67
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.5e-19 Score=192.48 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCeEEecCCCccCCCCCChhhhHhhccccccccc-
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR- 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~- 445 (604)
.++|+|+|||||||||++|+|+.+++.|.+...+..+.... .....++.+.+.+ ||.. .....+..+.. .....
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l-fp~~-tv~eNi~~~~~-~~~~~~ 108 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYAL-YPHM-SVRENMAYGLK-IRGMPK 108 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccc-cCCC-CHHHHHHhHHh-hcCCCH
Confidence 58999999999999999999999999998765554332111 0112233444433 2221 11111111110 00000
Q ss_pred -CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 -EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 -~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+..+++.+++..+. .+...++|||+.|+..+||+++.+ |+
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~----------------------~~~~~~LSgGq~QRvalARAL~~~------------P~ 154 (356)
T PRK11650 109 AEIEERVAEAARILELEPLL----------------------DRKPRELSGGQRQRVAMGRAIVRE------------PA 154 (356)
T ss_pred HHHHHHHHHHHHHcCChhHh----------------------hCChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 0011233333333332111 112234679999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||...+..+... ..+. +.|.|+|+||||.+++..+
T Consensus 155 llLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l 201 (356)
T PRK11650 155 VFLFDEP-LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTL 201 (356)
T ss_pred EEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 9999999 999999999988877 4444 4589999999999999776
No 68
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.79 E-value=2e-19 Score=193.75 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhcccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIA- 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~- 442 (604)
-.+||+|||||||||||++|+|+.++..|.+...+..+.... .... .++.+.+.+.+... ....+..+..+..
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t--v~e~v~~~~~~~~~ 107 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD--VRQVVEMGRTPHRS 107 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC--HHHHHHhccchhcc
Confidence 369999999999999999999999998888765554332211 0111 23344444433322 1111222211100
Q ss_pred ccc----CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 443 QLR----EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 443 ~l~----~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
.+. .....+..+++.+++..+. .+.+..+|||+.++..+|++|+.+
T Consensus 108 ~~~~~~~~~~~~v~~~le~vgl~~~~----------------------~~~~~~LSgGerQRv~IArAL~~~-------- 157 (402)
T PRK09536 108 RFDTWTETDRAAVERAMERTGVAQFA----------------------DRPVTSLSGGERQRVLLARALAQA-------- 157 (402)
T ss_pred cccCCCHHHHHHHHHHHHHcCCchhh----------------------cCChhhCCHHHHHHHHHHHHHHcC--------
Confidence 000 0011223333333321111 123345789999999999999666
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.+.+.|||++|||++++..+ ...++|....
T Consensus 158 ----P~iLLLDEP-tsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 158 ----TPVLLLDEP-TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred ----CCEEEEECC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999998888887 55655689999999999999765 2335555443
No 69
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.79 E-value=2.5e-19 Score=177.42 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCeEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .....++.+.+.+..................... .
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~ 105 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK-D 105 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH-H
Confidence 369999999999999999999999988887754443321110 0011222333322211111111100000000000 0
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++.. .. .....++|||+.++..+|++++.+ |++
T Consensus 106 ~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qr~~laral~~~------------p~l 151 (213)
T cd03301 106 EIDERVREVAELLQIEH--------------------LL--DRKPKQLSGGQRQRVALGRAIVRE------------PKV 151 (213)
T ss_pred HHHHHHHHHHHHcCCHH--------------------HH--hCChhhCCHHHHHHHHHHHHHhcC------------CCE
Confidence 00011122222222211 01 111223578999999999999555 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
+||||| |++||+.++..+.++ ..+.. .+.||||||||+.++..+
T Consensus 152 lllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~ 197 (213)
T cd03301 152 FLMDEP-LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTM 197 (213)
T ss_pred EEEcCC-cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999 999999999999887 44443 489999999999988765
No 70
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=6.3e-19 Score=163.24 Aligned_cols=178 Identities=19% Similarity=0.145 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEE-ecCCCccCCCCCCh-hhhHhhc-cccc---
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRL-CDCPGLVFPSKVPK-PLQVLMG-SFPI--- 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l-~D~pGl~~p~~~~~-~~~~l~g-~~~i--- 441 (604)
-+++|||++|+||||||-+|+|+..+++|.+...+..+....-+....+ -...|++|+++.-. .+..+.. .+|.
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 4799999999999999999999999999987655443322211110000 11235555554210 0000000 0111
Q ss_pred -ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 442 -AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 442 -~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
+...+....+..++.++++...+. ...+ ++|||+.|++++||++ +
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~--------------------HyP~--qLSGGEQQRVAiARAf------------a 162 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLT--------------------HYPA--QLSGGEQQRVALARAF------------A 162 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccc--------------------cCcc--ccCchHHHHHHHHHHh------------c
Confidence 112233344445555555433221 1122 2579999999999999 4
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhhhhhccCCCcc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNVKRKHKGEETE 580 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~~~~~~~~~~~ 580 (604)
..|++|+.||| |.+||..+-..+.++ ...++.|+|+|+||||...+.++.|.-+-+.+.
T Consensus 163 ~~P~vLfADEP-TGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 163 GRPDVLFADEP-TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223 (228)
T ss_pred CCCCEEeccCC-CCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecce
Confidence 55999999999 999999887777776 234667999999999999999997765544443
No 71
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.7e-19 Score=179.76 Aligned_cols=167 Identities=16% Similarity=0.094 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.++........+........
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 369999999999999999999999998887755443322110 0111 223333332211111111100000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... ......+..++..+++.... ......+|||+.++..+|++++.+
T Consensus 112 ~~~-~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~LS~G~~qrv~la~al~~~---------- 158 (233)
T cd03258 112 VPK-AEIEERVLELLELVGLEDKA----------------------DAYPAQLSGGQKQRVGIARALANN---------- 158 (233)
T ss_pred CCH-HHHHHHHHHHHHHCCChhhh----------------------hcChhhCCHHHHHHHHHHHHHhcC----------
Confidence 000 00001122222222221110 112234678999999999998555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+ .|.|||+||||.+++..+
T Consensus 159 --p~lllLDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~ 207 (233)
T cd03258 159 --PKVLLCDEA-TSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI 207 (233)
T ss_pred --CCEEEecCC-CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 44444 489999999999998765
No 72
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.8e-19 Score=176.34 Aligned_cols=165 Identities=18% Similarity=0.094 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-------ecCC-eEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+.........+.......
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999998887754443321100 0111 22333333221111111110000000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.. ......+..++..+++.. .. ......+|||+.++..+|++++.+
T Consensus 104 --~~-~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrv~la~al~~~--------- 149 (214)
T cd03297 104 --RN-REDRISVDELLDLLGLDH--------------------LL--NRYPAQLSGGEKQRVALARALAAQ--------- 149 (214)
T ss_pred --CH-HHHHHHHHHHHHHcCCHh--------------------Hh--hcCcccCCHHHHHHHHHHHHHhcC---------
Confidence 00 000011122222222110 01 112234678999999999999555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+
T Consensus 150 ---p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 198 (214)
T cd03297 150 ---PELLLLDEP-FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL 198 (214)
T ss_pred ---CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHh
Confidence 999999999 999999999999888 44444 488999999999998765
No 73
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=2.8e-19 Score=190.26 Aligned_cols=167 Identities=13% Similarity=-0.023 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--------ecCCeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--------LTDNIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--------~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.++|+|+|||||||||++|+|+.+++.|.+...+.++.... .....++.+.++++....+...+.......
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999999999998866555433211 112234455555442222222111111100
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++.... .+....+|||+.++..+||+++.+
T Consensus 100 ~~~~-~~~~~~~~~~l~~vgL~~~~----------------------~~~p~~LSGGq~QRV~lARAL~~~--------- 147 (363)
T TIGR01186 100 GWPE-QERKEKALELLKLVGLEEYE----------------------HRYPDELSGGMQQRVGLARALAAE--------- 147 (363)
T ss_pred CCCH-HHHHHHHHHHHHhcCCchhh----------------------hCChhhCCHHHHHHHHHHHHHhcC---------
Confidence 0000 00112233333333332111 111223679999999999999665
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.+. ..+. ..+.||||||||++++..+
T Consensus 148 ---p~iLLlDEP-~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~ 196 (363)
T TIGR01186 148 ---PDILLMDEA-FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI 196 (363)
T ss_pred ---CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 5554 3589999999999998775
No 74
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.5e-19 Score=183.00 Aligned_cols=176 Identities=13% Similarity=0.007 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--------ecCCeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--------LTDNIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--------~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .....++.+.+.+.........+.......
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 469999999999999999999999998887755443322110 011123333333321111111111100000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++... .. .....+|||+.++..+|++++.+
T Consensus 131 ~~~~-~~~~~~~~~~l~~~~l~~~--------------------~~--~~~~~LS~Gq~qrv~lAral~~~--------- 178 (269)
T cd03294 131 GVPR-AEREERAAEALELVGLEGW--------------------EH--KYPDELSGGMQQRVGLARALAVD--------- 178 (269)
T ss_pred CCCH-HHHHHHHHHHHHHcCCHhH--------------------hh--CCcccCCHHHHHHHHHHHHHhcC---------
Confidence 0000 0000112222222222111 11 11123579999999999999655
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|++|||||| |++||+.++..+.++ ..+. +.|.||||||||++++..+ .....|...
T Consensus 179 ---p~illLDEP-t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 179 ---PDILLMDEA-FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240 (269)
T ss_pred ---CCEEEEcCC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999 999999999999887 4443 3489999999999988665 233455544
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.8e-19 Score=189.82 Aligned_cols=167 Identities=16% Similarity=0.080 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.... .... .++.+.+.+.........+........
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG 111 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence 369999999999999999999999998887755444332110 0111 233343432211111111111000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... ......+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 112 ~~~-~~~~~~~~~~l~~~gL~~~--------------------~--~~~~~~LSgGq~qRv~lAraL~~~---------- 158 (343)
T PRK11153 112 TPK-AEIKARVTELLELVGLSDK--------------------A--DRYPAQLSGGQKQRVAIARALASN---------- 158 (343)
T ss_pred CCH-HHHHHHHHHHHHHcCCchh--------------------h--hCChhhCCHHHHHHHHHHHHHHcC----------
Confidence 000 0000112222222222110 0 112234679999999999999555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+
T Consensus 159 --p~iLlLDEP-ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~ 207 (343)
T PRK11153 159 --PKVLLCDEA-TSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI 207 (343)
T ss_pred --CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 44443 489999999999998764
No 76
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.78 E-value=3.4e-19 Score=183.04 Aligned_cols=166 Identities=16% Similarity=0.034 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+. +.. .....+..+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~-~~~-tv~enl~~~~~~ 111 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF-TDM-NVFDNVAYPLRE 111 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccC-CCC-CHHHHHHHHHHH
Confidence 369999999999999999999999998887754443321110 0111 2233333322 211 111111100000
Q ss_pred cccccC--chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 441 IAQLRE--PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 441 i~~l~~--~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
...... ....+..++..+++.. .. ......+|||+.++..+|++++.+
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~gl~~--------------------~~--~~~~~~LSgGq~qrv~laral~~~-------- 161 (269)
T PRK11831 112 HTQLPAPLLHSTVMMKLEAVGLRG--------------------AA--KLMPSELSGGMARRAALARAIALE-------- 161 (269)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChh--------------------hh--hCChhhCCHHHHHHHHHHHHHhcC--------
Confidence 000000 0011112222222111 00 112234679999999999999555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+
T Consensus 162 ----p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~ 210 (269)
T PRK11831 162 ----PDLIMFDEP-FVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSI 210 (269)
T ss_pred ----CCEEEEcCC-CccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence 999999999 999999999988887 44443 488999999999988765
No 77
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.78 E-value=6.1e-19 Score=176.04 Aligned_cols=173 Identities=18% Similarity=0.077 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+||+|||||+++|+|+.++..|.+...+..+.........++.+.+.+.................. ..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~-----~~ 101 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLG-----LP 101 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcC-----CC
Confidence 3699999999999999999999999988876544332211100111122222222111111011100000000 00
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..+++.+++... . ......+|||+.++..+|++++.+ |+++|
T Consensus 102 ~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~~rv~laral~~~------------p~lll 147 (223)
T TIGR03740 102 DSRIDEVLNIVDLTNT--------------------G--KKKAKQFSLGMKQRLGIAIALLNH------------PKLLI 147 (223)
T ss_pred HHHHHHHHHHcCCcHH--------------------H--hhhHhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 1122222222222110 0 112233568888888888888555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|||| |++||+.++..+.++ ..+.+.|.|||+||||.+++..+ . ...+|....
T Consensus 148 lDEP-~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 148 LDEP-TNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred ECCC-ccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 9999 999999999999888 45555688999999999998764 2 334555443
No 78
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.78 E-value=3.3e-19 Score=178.45 Aligned_cols=166 Identities=16% Similarity=0.065 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--------cCCeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--------TDNIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--------~~~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.+||+|+||+|||||+++|+|+.++..|.+...+..+..... ....++.+.+.+. +.. .....+..+..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~-~~~-tv~~~l~~~~~ 114 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI-PTL-NALENVELPAL 114 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC-CCc-CHHHHHHHHHH
Confidence 3699999999999999999999999988877544433221100 0112233333332 111 11111110000
Q ss_pred cccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 440 PIAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 440 ~i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
..... .....+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 115 -~~~~~~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~Ge~qrl~la~al~~~------- 164 (228)
T PRK10584 115 -LRGESSRQSRNGAKALLEQLGLGKR--------------------L--DHLPAQLSGGEQQRVALARAFNGR------- 164 (228)
T ss_pred -hcCCCHHHHHHHHHHHHHHcCCHhH--------------------h--hCChhhCCHHHHHHHHHHHHHhcC-------
Confidence 00000 001112222222222111 1 112224678999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhhh
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~~ 571 (604)
|+++||||| |++||+.+...+.++ ..+. +.+.|||+||||++++..+.
T Consensus 165 -----p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d 214 (228)
T PRK10584 165 -----PDVLFADEP-TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCD 214 (228)
T ss_pred -----CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 999999999 999999999999887 4443 35889999999999876543
No 79
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.1e-19 Score=178.66 Aligned_cols=176 Identities=11% Similarity=0.022 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... ....+ ++.+.+.+. +.. .....+........
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~-~~~-tv~enl~~~~~~~~ 107 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIF-RRL-SVYDNLMAVLQIRD 107 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCccc-ccC-cHHHHHhhhhhccc
Confidence 469999999999999999999999998887754443321100 00111 222222221 110 11111100000000
Q ss_pred cccC--chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLRE--PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~~--~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
.... ....+..++..+++. ... ......+|||+.++..+|++++.+
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~--------------------~~~--~~~~~~LS~G~~qrv~laral~~~---------- 155 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIE--------------------HLR--DSMGQSLSGGERRRVEIARALAAN---------- 155 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCH--------------------HHh--hcchhhCCHHHHHHHHHHHHHhcC----------
Confidence 0000 000111122221111 000 122234678999999999988555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh----hhccCCCcc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK----RKHKGEETE 580 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||++|||++++..+. ..++|....
T Consensus 156 --p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 156 --PKFILLDEP-FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred --CCEEEEcCC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 999999999 999999999888877 455556899999999998887652 345565443
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.78 E-value=4.8e-19 Score=179.77 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=61.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.+.|||+||||..++..+
T Consensus 144 ~LS~Gq~qrv~la~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~ 210 (250)
T PRK11264 144 RLSGGQQQRVAIARALAMR------------PEVILFDEP-TSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV 210 (250)
T ss_pred hCChHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 4679999999999999555 999999999 999999999999887 45555689999999999998764
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
. ...+|....
T Consensus 211 ~d~i~~l~~G~i~~ 224 (250)
T PRK11264 211 ADRAIFMDQGRIVE 224 (250)
T ss_pred cCEEEEEECCEEEE
Confidence 2 335555443
No 81
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.78 E-value=5.5e-19 Score=173.95 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-------ecCCe-EEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-------LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-------~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.+||+|+||+|||||+++|+|+.++..|.+...+..+..+. ....+ ++.+.+.+.................
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 369999999999999999999999998887755444321110 01112 2223332211111111110000000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 105 ~~~~-~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~lS~G~~qr~~laral~~~--------- 152 (206)
T TIGR03608 105 KLSK-KEKREKKKEALEKVGLNLK--------------------L--KQKIYELSGGEQQRVALARAILKD--------- 152 (206)
T ss_pred CCCH-HHHHHHHHHHHHHcCchhh--------------------h--cCChhhCCHHHHHHHHHHHHHHcC---------
Confidence 0000 0001111222222221110 0 111223568888899999888555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
|+++||||| |++||+.++..+.++ ..+.+.+.|||+|||+++.+.
T Consensus 153 ---p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 153 ---PPLILADEP-TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred ---CCEEEEeCC-cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 999999999 999999999999988 445445899999999998764
No 82
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.78 E-value=5.9e-19 Score=176.44 Aligned_cols=169 Identities=18% Similarity=0.098 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ec-CCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LT-DNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~-~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+|||||||||++|+|+.++..|.+...+..+.... .. ...++.+.+.+.+.........+..+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 369999999999999999999999998887755443322111 01 11233333322111111111111100000
Q ss_pred cccccC--chHH-HHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 441 IAQLRE--PYST-VQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 441 i~~l~~--~~~~-i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
...... .... +..++..+++. ..+ .......+|||+.++..+|++++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~--------------------~~~-~~~~~~~LS~G~~qrv~laral~~~------- 163 (228)
T cd03257 112 HGKLSKKEARKEAVLLLLVGVGLP--------------------EEV-LNRYPHELSGGQRQRVAIARALALN------- 163 (228)
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCC--------------------hhH-hhCCchhcCHHHHHHHHHHHHHhcC-------
Confidence 000000 0000 01111111110 000 0112233679999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+. |.|||+||||++++..+
T Consensus 164 -----p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 212 (228)
T cd03257 164 -----PKLLIADEP-TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212 (228)
T ss_pred -----CCEEEecCC-CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 444443 89999999999988754
No 83
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=7e-19 Score=174.63 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCe-EEecCCCccCCCC-CChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNI-RLCDCPGLVFPSK-VPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~-~l~D~pGl~~p~~-~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+..+........+ ++.+.+++. +.. ........... ...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~-~~~t~~e~l~~~~~~---~~~- 112 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLK-ADLSTLENLHFLCGL---HGR- 112 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccc-cCCcHHHHHHHHHHh---cCC-
Confidence 36999999999999999999999999888775544332211011112 223333321 111 11111010000 000
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++... + ......+|||+.++..+|++++.+ |++
T Consensus 113 ~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qrv~laral~~~------------p~l 158 (214)
T PRK13543 113 RAKQMPGSALAIVGLAGY--------------------E--DTLVRQLSAGQKKRLALARLWLSP------------APL 158 (214)
T ss_pred cHHHHHHHHHHHcCChhh--------------------c--cCChhhCCHHHHHHHHHHHHHhcC------------CCE
Confidence 001111222222221110 0 112234678999999999999655 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+||||| |++||+.++..+.++ ..+.+.+.||||+|||++++..+.
T Consensus 159 lllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 159 WLLDEP-YANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVR 204 (214)
T ss_pred EEEeCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhc
Confidence 999999 999999999999888 445556899999999999987763
No 84
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=4.9e-19 Score=173.13 Aligned_cols=162 Identities=14% Similarity=0.023 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.........++.+.+++.+.......+....... ..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~------~~ 100 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY------NS 100 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc------cc
Confidence 369999999999999999999999998887654443321110000111222222222111111111000000 00
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. .. .+....+|||+.++..+|++++.+ |+++|
T Consensus 101 ~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~~rl~la~al~~~------------p~~ll 146 (195)
T PRK13541 101 AETLYAAIHYFKLHD--------------------LL--DEKCYSLSSGMQKIVAIARLIACQ------------SDLWL 146 (195)
T ss_pred HHHHHHHHHHcCCHh--------------------hh--ccChhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 111222222222110 01 112234578999999999988555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+.++..+.++ ......+.|||+||||..++...
T Consensus 147 lDEP-~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 147 LDEV-ETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred EeCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence 9999 999999999999888 33345689999999999987653
No 85
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.78 E-value=1.8e-18 Score=179.12 Aligned_cols=179 Identities=22% Similarity=0.260 Sum_probs=125.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhh--ccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVT--GTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYN 271 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~--~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~ 271 (604)
++..+|++|+|+|+++|.+ ....+++|+. ...++|+|+|+||+||+++.....|..++... +..++++||.
T Consensus 75 i~anvD~vllV~d~~~p~~-s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~--g~~v~~vSA~---- 147 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFF-NPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALAL--GYPVLAVSAK---- 147 (287)
T ss_pred EEEeCCEEEEEEEcCCCCC-CHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhC--CCeEEEEECC----
Confidence 6899999999999999983 2345677764 24578999999999999876656677766553 4678888886
Q ss_pred cccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhh
Q psy3589 272 LRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELK 351 (604)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (604)
++.|+++|...+.
T Consensus 148 ------------------------~g~gi~~L~~~L~------------------------------------------- 160 (287)
T cd01854 148 ------------------------TGEGLDELREYLK------------------------------------------- 160 (287)
T ss_pred ------------------------CCccHHHHHhhhc-------------------------------------------
Confidence 3455555543221
Q ss_pred hhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCCCccC
Q psy3589 352 KVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
+ .+++++|+||||||||||+|+|.....+|.+.. +|++.+.+.+.....++|+||+..
T Consensus 161 --------------~-k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 161 --------------G-KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred --------------c-ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 0 368999999999999999999998877776643 566667777766778999999964
Q ss_pred CCCCChhhhHhhcccccccccCchHHHHHHHHhcCHHHHhhcCCCC
Q psy3589 425 PSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPD 470 (604)
Q Consensus 425 p~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~ 470 (604)
........ ..+...+..+..++..|.+..|.|...|.
T Consensus 226 ~~~~~~~~---------~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~ 262 (287)
T cd01854 226 FGLLHIDP---------EELAHYFPEFRELAGQCKFRDCTHTNEPG 262 (287)
T ss_pred cCCccCCH---------HHHHHHhHHHHHHhCCCCCCCCcCCCCCC
Confidence 33111101 11112233455566777777777776554
No 86
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.1e-19 Score=181.93 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-----ecC-CeEEecCCCccCCCCCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-----LTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-----~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... ... ..++.+.+...+... .....+.... ..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~-~~~~~l~~~~-~~ 105 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT-DIDSDIAFSL-RN 105 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc-cHHHHHHHHH-HH
Confidence 369999999999999999999999998887755444321000 001 112233222111110 0000000000 00
Q ss_pred cccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 442 AQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 442 ~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... .....+..++..+++.. + ..+....+|||+.++..+|++++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~---------------------~-~~~~~~~LSgG~~qrl~laraL~~~--------- 154 (271)
T PRK13638 106 LGVPEAEITRRVDEALTLVDAQH---------------------F-RHQPIQCLSHGQKKRVAIAGALVLQ--------- 154 (271)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHh---------------------H-hcCCchhCCHHHHHHHHHHHHHHcC---------
Confidence 0000 00011111222221110 0 0122234679999999999999655
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 155 ---p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 202 (271)
T PRK13638 155 ---ARYLLLDEP-TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEI 202 (271)
T ss_pred ---CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 45545589999999999998764
No 87
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.78 E-value=3.6e-19 Score=178.06 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=55.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+. .|||+||||++++..+
T Consensus 141 ~LSgG~~qrv~la~al~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~ 206 (227)
T cd03260 141 GLSGGQQQRLCLARALANE------------PEVLLLDEP-TSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARV 206 (227)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 455444 8999999999988764
No 88
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6e-19 Score=177.97 Aligned_cols=66 Identities=9% Similarity=0.041 Sum_probs=57.0
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..
T Consensus 144 ~LS~G~~qrv~la~al~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 210 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQ------------PKLILADEP-VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210 (241)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCc-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 4679999999999999665 999999999 999999999998887 44443 48999999999999876
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 211 ~ 211 (241)
T cd03256 211 Y 211 (241)
T ss_pred h
Confidence 5
No 89
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.9e-19 Score=184.25 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-----e-cCCeEEecCCCcc-CCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-----L-TDNIRLCDCPGLV-FPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-----~-~~~~~l~D~pGl~-~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+..+.... . ....++.+.|... ++..+ ...+..+...
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv--~e~l~~~~~~ 111 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI--EKDIAFGPIN 111 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH--HHHHHhHHHH
Confidence 369999999999999999999999999888755444332110 0 1112333333211 11111 1111111000
Q ss_pred ccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 441 IAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 441 i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
..+. .....+..++..+++.. ..+ ..+....+|||+.++..+|++++.+
T Consensus 112 -~~~~~~~~~~~~~~~l~~~gL~~-------------------~~~-~~~~~~~LSgGq~qrv~iAraL~~~-------- 162 (287)
T PRK13637 112 -LGLSEEEIENRVKRAMNIVGLDY-------------------EDY-KDKSPFELSGGQKRRVAIAGVVAME-------- 162 (287)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCc-------------------hhh-ccCCcccCCHHHHHHHHHHHHHHcC--------
Confidence 0000 00111222333322210 000 1122234679999999999999665
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..|.++ ..+.+ .|.|||+||||++++..+ . ...+|....
T Consensus 163 ----P~llllDEP-t~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 163 ----PKILILDEP-TAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred ----CCEEEEECC-ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 45544 489999999999998664 3 335565544
No 90
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=7.8e-19 Score=173.68 Aligned_cols=166 Identities=19% Similarity=0.091 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCeEEecCCCccCCCCCChhhhHhhcccccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL- 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l- 444 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .....++.+.+.+ ++.. .....+..+.......
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~-~~~~-tv~enl~~~~~~~~~~~ 102 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL-FAHL-TVEQNVGLGLSPGLKLT 102 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccccc-CCCC-cHHHHHhcccccccCcc
Confidence 469999999999999999999999998887755443321110 0111233333432 2211 1111111111000000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++.... . .....+|||+.++..+|++++.+ |+
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~--------------------~--~~~~~LS~G~~qrv~ia~al~~~------------p~ 148 (211)
T cd03298 103 AEDRQAIEVALARVGLAGLE--------------------K--RLPGELSGGERQRVALARVLVRD------------KP 148 (211)
T ss_pred HHHHHHHHHHHHHcCCHHHH--------------------h--CCcccCCHHHHHHHHHHHHHhcC------------CC
Confidence 00011223333333321111 1 11224679999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
++||||| |++||+.++..+.++ ..+. +.+.|||+||||++++..+
T Consensus 149 llllDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 195 (211)
T cd03298 149 VLLLDEP-FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195 (211)
T ss_pred EEEEcCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh
Confidence 9999999 999999999999888 4443 3589999999999998764
No 91
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=5e-19 Score=178.61 Aligned_cols=176 Identities=13% Similarity=0.061 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-----EecCC-eEEecCCCccCCCCCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-----FLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-----~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
-.+||+|+||+|||||+++|+|+..+..|.+...+..+... ..... .++.+.+.+.........+ ..+....
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l--~~~~~~~ 105 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENV--MFGPLRV 105 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHH--HhHHHHh
Confidence 36999999999999999999999999888775544332210 00111 2233333322111111111 0000000
Q ss_pred cccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 442 AQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 442 ~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... .....+..++..+++.. .+ ......+|||+.++..+|++++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~--------------------~~--~~~~~~LS~G~~qrv~la~al~~~--------- 154 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAE--------------------RA--HHYPSELSGGQQQRVAIARALAVK--------- 154 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChH--------------------HH--hcChhhcCHHHHHHHHHHHHHhcC---------
Confidence 0000 00011122222222111 11 112223578999999999999555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|+++||||| |++||+.++..+.++ ..+.+.+.|||+||||++++..+ ...++|....
T Consensus 155 ---p~llllDEP-~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 155 ---PKLMLFDEP-TSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred ---CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999 999999999999888 44555689999999999998764 2335565543
No 92
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=4.3e-19 Score=172.78 Aligned_cols=183 Identities=16% Similarity=0.080 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-------cCCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-------TDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-------~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.|+|||++||||||||++|.|+..++.|.+.+.+..+....- .+..++++.+.++... .....++.|.+.
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~--sv~~NVl~grl~ 108 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL--SVLENVLLGRLG 108 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccccc--HHHHHHHhhhcc
Confidence 3699999999999999999999999999988766654433221 1112233333332111 122223333221
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHH------HHHHHHHhcchhhhccCcccHHHHHHHHHHhhccc
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMD------ICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEG 514 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~e------ll~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG 514 (604)
. ...+..++..+.. .+...+++ +++....+.+. +||||.|++.+||+|+++
T Consensus 109 ~------~s~~~slfglfsk-----------~dk~~Al~aLervgi~~~A~qra~~--LSGGQQQRVaIARaL~Q~---- 165 (258)
T COG3638 109 Y------TSTWRSLFGLFSK-----------EDKAQALDALERVGILDKAYQRAST--LSGGQQQRVAIARALVQQ---- 165 (258)
T ss_pred c------chHHHHHhCCCCH-----------HHHHHHHHHHHHcCcHHHHHHHhcc--CCcchhHHHHHHHHHhcC----
Confidence 1 1111111111110 01111222 23333333444 569999999999999555
Q ss_pred eeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh----hhhccCCCcccCcC
Q psy3589 515 RICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV----KRKHKGEETEEDEG 584 (604)
Q Consensus 515 ~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~~~~ 584 (604)
|+++|.||| ++.||+.+...+.++ .. ..+.|.|||++.|+++.|.++ +-..+|..+=+...
T Consensus 166 --------pkiILADEP-vasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 166 --------PKIILADEP-VASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred --------CCEEecCCc-ccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999 999999998888777 33 355699999999999999766 34455555554433
No 93
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=8.7e-19 Score=173.05 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-eEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-.+||+|+||+|||||+++|+|+..+..|.+...+........... .++.+.+.+.+................ .
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~ 103 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG-----G 103 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC-----C
Confidence 4699999999999999999999999888876544332210000111 111111111111010011100000000 0
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..++..+++... . ......+|||+.++..+|++++.+ |+++
T Consensus 104 ~~~~~~~~l~~~~l~~~---------------------~-~~~~~~LS~G~~qrl~la~al~~~------------p~ll 149 (207)
T PRK13539 104 EELDIAAALEAVGLAPL---------------------A-HLPFGYLSAGQKRRVALARLLVSN------------RPIW 149 (207)
T ss_pred cHHHHHHHHHHcCCHHH---------------------H-cCChhhcCHHHHHHHHHHHHHhcC------------CCEE
Confidence 01112223333222111 0 111223578999999999999555 9999
Q ss_pred cccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhhccCCC
Q psy3589 527 SKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRKHKGEE 578 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~~~~~~ 578 (604)
||||| |++||+.++..+.++ ..+.+.+.|||+|||+.+++.. .+...-+.
T Consensus 150 llDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 150 ILDEP-TAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEeCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999 999999999999888 4454568999999999999887 55544443
No 94
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4e-19 Score=190.25 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCC-eEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|+|||||||||++|+|+..++.|.+...+..+..... ... .++.+.+.+. +.. .....+..+.. .....
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~-~~~-tv~eni~~~~~-~~~~~ 106 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALY-PHL-SVAENMSFGLK-LAGAK 106 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccC-CCC-CHHHHHHhHHh-hcCCC
Confidence 3699999999999999999999999988887554443321100 111 2333333322 211 11111111100 00000
Q ss_pred --CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 446 --EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 446 --~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++...+ .+....+|||+.++..+|++|+.+ |
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~----------------------~~~~~~LSgGq~QRvaLAraL~~~------------P 152 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLL----------------------DRKPKALSGGQRQRVAIGRTLVAE------------P 152 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhh----------------------cCChhhCCHHHHHHHHHHHHHhcC------------C
Confidence 0011222233333221111 122234679999999999999665 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||||| |++||+..+..+.++ ..+. +.|.|||+||||++++..+
T Consensus 153 ~lLLLDEP-ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~ 200 (369)
T PRK11000 153 SVFLLDEP-LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200 (369)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHh
Confidence 99999999 999999999888877 4443 3589999999999998765
No 95
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.77 E-value=3.7e-19 Score=189.64 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccc--cCcCcccceeEEEE--ecCCeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSV--SRTPGHTKHFQTIF--LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~--g~i~g~t~~~q~~~--~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
.++|+|+|||||||||++|+|+..++. |.+...+..+.... .....++.+.+.++....+...+.......... .
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~-~ 111 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMP-K 111 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCC-H
Confidence 699999999999999999999999988 87755444331110 011123344443321111111111100000000 0
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++..++ .+....+|||+.++..+||+|+.+ |+
T Consensus 112 ~~~~~~v~~~l~~~gL~~~~----------------------~~~~~~LSgGq~QRvaLARAL~~~------------P~ 157 (362)
T TIGR03258 112 ADIAERVADALKLVGLGDAA----------------------AHLPAQLSGGMQQRIAIARAIAIE------------PD 157 (362)
T ss_pred HHHHHHHHHHHHhcCCCchh----------------------hCChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 00011222333333221111 122234679999999999999665 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCC--CCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPY--KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~--g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+..+..|... ..+.+. |.|+|+||||++++..+
T Consensus 158 llLLDEP-~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l 205 (362)
T TIGR03258 158 VLLLDEP-LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL 205 (362)
T ss_pred EEEEcCc-cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence 9999999 999999999998887 445443 78999999999998775
No 96
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5e-19 Score=182.30 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCC-ccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPG-LVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pG-l~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.... .... .++.+.|. ..+... ....+..+... .
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t--v~e~l~~~~~~-~ 108 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST--VWDDVAFGPVN-M 108 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc--HHHHHHhhHHH-c
Confidence 469999999999999999999999998887755443322110 0011 12233322 111111 11111111000 0
Q ss_pred ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
.+. .....+..+++.+++... ..+....+|||+.++..+|++++.+
T Consensus 109 ~~~~~~~~~~~~~~l~~~~L~~~----------------------~~~~~~~LSgG~~qrv~laraL~~~---------- 156 (274)
T PRK13647 109 GLDKDEVERRVEEALKAVRMWDF----------------------RDKPPYHLSYGQKKRVAIAGVLAMD---------- 156 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHH----------------------hcCChhhCCHHHHHHHHHHHHHHcC----------
Confidence 000 000112222222222111 0112234679999999999999665
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+++.|.|||+||||++++.++ + ..++|....
T Consensus 157 --p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (274)
T PRK13647 157 --PDVIVLDEP-MAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218 (274)
T ss_pred --CCEEEEECC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 55555589999999999998664 2 335565543
No 97
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=1.1e-18 Score=176.85 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+|||||||||++|+|+.++..|.+...+..+ .++.+.+.+.+...+.. .+..... .....
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i--------~~~~q~~~~~~~~tv~e---~l~~~~~--~~~~~ 92 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV--------SYKPQYIKADYEGTVRD---LLSSITK--DFYTH 92 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceE--------EEecccccCCCCCCHHH---HHHHHhh--hcccc
Confidence 36999999999999999999999999888764333211 11122222211111111 1110000 00000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. .+. ...-.+|||+.++..+|++++.+ |+++|
T Consensus 93 ~~~~~~~l~~l~l~~--------------------~~~--~~~~~LSgGe~qrv~iaraL~~~------------p~lll 138 (246)
T cd03237 93 PYFKTEIAKPLQIEQ--------------------ILD--REVPELSGGELQRVAIAACLSKD------------ADIYL 138 (246)
T ss_pred HHHHHHHHHHcCCHH--------------------Hhh--CChhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 011122222222211 111 12223579999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+..+..+.++ ..+. +.+.||||||||++++..+
T Consensus 139 lDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 139 LDEP-SAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred EeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 9999 999999999988887 4443 3489999999999998865
No 98
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.77 E-value=7e-19 Score=183.60 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecC-CeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+|||||||||++|+|+..++.|.+...+..+... .... ..++.+.+.+.........+......+....
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~- 107 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKG- 107 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCH-
Confidence 35999999999999999999999999988775444332210 0011 1233333332211111111111111110000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++... . .+..-.+|||+.++..+|++++.+ |+
T Consensus 108 ~~~~~~~~~~l~~~gl~~~--------------------~--~~~~~~LS~G~~qrv~la~al~~~------------p~ 153 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPE--------------------Q--HKKIGQLSKGYRQRVGLAQALIHD------------PK 153 (301)
T ss_pred HHHHHHHHHHHHHCCCchH--------------------h--cCchhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 0001112222222222111 1 112223568999999999999665 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+.++..+.++ ..+.+ +.|||++||+++++.++
T Consensus 154 lliLDEP-t~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 154 VLILDEP-TTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAI 198 (301)
T ss_pred EEEEcCC-cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHh
Confidence 9999999 999999999999988 55544 79999999999998875
No 99
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.77 E-value=7.9e-19 Score=174.72 Aligned_cols=165 Identities=14% Similarity=0.058 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCC-eEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
.++|+|+||||||||+++|+|+.+++.|.+...+....... .... .++.+.+.+.........+........... .
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~-~ 108 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPK-S 108 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCH-H
Confidence 69999999999999999999999998887654433221100 0111 122233322111111111100000000000 0
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++.. .. ......+|||+.++..+|++++.+ |++
T Consensus 109 ~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrv~la~al~~~------------p~l 154 (220)
T cd03263 109 EIKEEVELLLRVLGLTD--------------------KA--NKRARTLSGGMKRKLSLAIALIGG------------PSV 154 (220)
T ss_pred HHHHHHHHHHHHcCCHH--------------------HH--hChhhhCCHHHHHHHHHHHHHhcC------------CCE
Confidence 00011122222222111 00 111233578999999999988555 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+||||| |++||+.+...+.++ ..+.+ +.|||++|||++++..+
T Consensus 155 lllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 155 LLLDEP-TSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEAL 198 (220)
T ss_pred EEECCC-CCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHh
Confidence 999999 999999999999888 44444 58999999999998765
No 100
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5.9e-19 Score=187.47 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCC-eEEecCCCccCCCCCChhhhHhhcccccccc--
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL-- 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l-- 444 (604)
.++|+|+|||||||||++|+|+..++.|.+...+..+..... ... .++.+.+.+ ||.. .....+..+.. ....
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~l-fp~~-tv~eNi~~~l~-~~~~~~ 110 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYAL-FPHM-SLGENVGYGLK-MLGVPK 110 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccc-CCCC-CHHHHHHHHHh-HcCCCH
Confidence 699999999999999999999999999987655443321111 111 233444433 2221 11111111100 0000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.+....+..++..+++..+. .+....+|||+.++..+||+++.+ |+
T Consensus 111 ~~~~~~v~~~l~~~gl~~~~----------------------~r~~~~LSgGq~QRVaLARaL~~~------------P~ 156 (351)
T PRK11432 111 EERKQRVKEALELVDLAGFE----------------------DRYVDQISGGQQQRVALARALILK------------PK 156 (351)
T ss_pred HHHHHHHHHHHHHcCCchhh----------------------cCChhhCCHHHHHHHHHHHHHHcC------------CC
Confidence 00011223333333321111 112234679999999999999666 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| +++||...+..+... ..+ ++.+.|+|+||||.+++..+
T Consensus 157 lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 157 VLLFDEP-LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred EEEEcCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 9999999 999999999988877 444 34589999999999998776
No 101
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.77 E-value=8.5e-19 Score=178.83 Aligned_cols=160 Identities=17% Similarity=0.096 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||||||||+++|+|+.+++.|.+...+...... .....++.+.+.+. +.. .....+..+... ..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~i~~v~q~~~l~-~~~-tv~enl~~~~~~-----~~ 110 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEA-REDTRLMFQDARLL-PWK-KVIDNVGLGLKG-----QW 110 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHh-hCceEEEecCccCC-CCC-cHHHHHHhcccc-----hH
Confidence 36999999999999999999999999888764332221100 01112333333322 211 111111111100 00
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++... . ......+|||+.++..+|++++.+ |+++|
T Consensus 111 ~~~~~~~l~~~gl~~~--------------------~--~~~~~~LSgGqkqrl~laraL~~~------------p~lll 156 (257)
T PRK11247 111 RDAALQALAAVGLADR--------------------A--NEWPAALSGGQKQRVALARALIHR------------PGLLL 156 (257)
T ss_pred HHHHHHHHHHcCChhH--------------------h--cCChhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 1122233333322111 1 112234679999999999999665 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+.++..+.++ ..+ ++.+.||||||||++++..+
T Consensus 157 LDEP-t~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~ 200 (257)
T PRK11247 157 LDEP-LGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAM 200 (257)
T ss_pred EeCC-CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9999 999999999998887 444 34589999999999987664
No 102
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.77 E-value=5.5e-19 Score=178.50 Aligned_cols=175 Identities=15% Similarity=0.043 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecC-CeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... ... ..++.+.+.+...... ...+..+...
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv--~~~l~~~~~~ 106 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV--LENVLHGRLG 106 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccH--HHHHhhcccc
Confidence 369999999999999999999999998887754443321110 011 1223333333211111 1111111000
Q ss_pred cc-------cc--cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhh
Q psy3589 441 IA-------QL--REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMA 511 (604)
Q Consensus 441 i~-------~l--~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dl 511 (604)
.. .. ......+..++..+++.. .. ......+|||+.++..+|++++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LSgG~~qrv~la~al~~~- 163 (243)
T TIGR02315 107 YKPTWRSLLGRFSEEDKERALSALERVGLAD--------------------KA--YQRADQLSGGQQQRVAIARALAQQ- 163 (243)
T ss_pred cccchhhhhccccHHHHHHHHHHHHHcCcHh--------------------hh--cCCcccCCHHHHHHHHHHHHHhcC-
Confidence 00 00 000011122222222111 00 122234679999999999999555
Q ss_pred ccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 512 TEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 512 SgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|++|||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+ ....+|...
T Consensus 164 -----------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 164 -----------PDLILADEP-IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred -----------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999999999 999999999998887 44433 488999999999998665 233555544
No 103
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.77 E-value=8.7e-19 Score=176.46 Aligned_cols=175 Identities=16% Similarity=0.103 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--cCCe-EEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+..... ...+ ++.+.+.+.+.......+...........
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~- 106 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSR- 106 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCH-
Confidence 4699999999999999999999999988877544433211100 0112 22232322211111111100000000000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++.. .+ ......+|||+.++..+|++++.+ |+
T Consensus 107 ~~~~~~~~~~l~~~gl~~--------------------~~--~~~~~~LS~G~~qrl~laral~~~------------p~ 152 (236)
T TIGR03864 107 AEARERIAALLARLGLAE--------------------RA--DDKVRELNGGHRRRVEIARALLHR------------PA 152 (236)
T ss_pred HHHHHHHHHHHHHcCChh--------------------hh--cCChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 000011112222221110 01 122234679999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhhhhh---ccCCC
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNVKRK---HKGEE 578 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~~~~---~~~~~ 578 (604)
++||||| |++||+.++..+.++ ..+. +.|.|||+||||++++..+.+. .+|..
T Consensus 153 llllDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i 210 (236)
T TIGR03864 153 LLLLDEP-TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210 (236)
T ss_pred EEEEcCC-ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeE
Confidence 9999999 999999999999887 4444 3589999999999998755433 44544
No 104
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.77 E-value=5.8e-19 Score=187.74 Aligned_cols=165 Identities=18% Similarity=0.121 Sum_probs=102.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCC-eEEecCCCccCCCCCChhhhHhhccc--cc-cc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDN-IRLCDCPGLVFPSKVPKPLQVLMGSF--PI-AQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~--~i-~~ 443 (604)
.++|+|+|||||||||++|+|+.+++.|.+...+..+..... ... .++.+.+.++ |.. .....+..+.. +. ..
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~-p~~-tv~eni~~~~~~~~~~~~ 107 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALF-RHM-TVFDNIAFGLTVLPRRER 107 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccC-CCC-cHHHHHHhhhhhcccccC
Confidence 689999999999999999999999998887655543321110 111 2333433332 221 11111111110 00 00
Q ss_pred c--cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 L--REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 l--~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
. ......+..+++.+++... . .+....+|||+.++..+||+++.+
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~~--------------------~--~~~~~~LSgGq~QRvalArAL~~~----------- 154 (353)
T PRK10851 108 PNAAAIKAKVTQLLEMVQLAHL--------------------A--DRYPAQLSGGQKQRVALARALAVE----------- 154 (353)
T ss_pred CCHHHHHHHHHHHHHHcCCchh--------------------h--hCChhhCCHHHHHHHHHHHHHhcC-----------
Confidence 0 0001122233333322111 0 112234679999999999999665
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+..+..+.+. ..+. +.+.|+|+||||++++..+
T Consensus 155 -P~llLLDEP-~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~ 203 (353)
T PRK10851 155 -PQILLLDEP-FGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV 203 (353)
T ss_pred -CCEEEEeCC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999888877 4444 3489999999999998876
No 105
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.77 E-value=1.2e-18 Score=192.59 Aligned_cols=156 Identities=22% Similarity=0.226 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcC-cccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTP-GHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~-g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
..-+||||||||+||||||++|+|...+..|.+. |.+ +...++++...-.+ +.. .....+....+..
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~~l~------~~~--t~~d~l~~~~~~~-- 414 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRDELD------PDK--TVLEELSEGFPDG-- 414 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhhhcC------ccC--cHHHHHHhhCccc--
Confidence 3358999999999999999999999888766553 333 33333333221100 000 1111111111100
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
....+..++.++++..- .. ....-++|||+.-+..+|..+ +.+|.
T Consensus 415 --~e~~~r~~L~~f~F~~~-------------------~~--~~~v~~LSGGEk~Rl~La~ll------------~~~pN 459 (530)
T COG0488 415 --DEQEVRAYLGRFGFTGE-------------------DQ--EKPVGVLSGGEKARLLLAKLL------------LQPPN 459 (530)
T ss_pred --cHHHHHHHHHHcCCChH-------------------HH--hCchhhcCHhHHHHHHHHHHh------------ccCCC
Confidence 01223333333322110 00 111123457777777777666 56799
Q ss_pred cccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+|||||| |||||+.++..|.+. +..+.+|||+||||+.++..+.
T Consensus 460 vLiLDEP-TNhLDi~s~~aLe~a--L~~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 460 LLLLDEP-TNHLDIESLEALEEA--LLDFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred EEEEcCC-CccCCHHHHHHHHHH--HHhCCCeEEEEeCCHHHHHhhc
Confidence 9999999 999999999999999 9999999999999999998874
No 106
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=5.9e-18 Score=179.29 Aligned_cols=170 Identities=29% Similarity=0.352 Sum_probs=133.6
Q ss_pred hhhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceE
Q psy3589 182 ELNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTI 261 (604)
Q Consensus 182 E~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~v 261 (604)
+.--.++.|...+++.||+||+|||++..++..+..+.+++. ..+||+|||+||+|-...+ ..-.+||.-.+ -.+
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-~~~kpviLvvNK~D~~~~e--~~~~efyslG~--g~~ 142 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-RSKKPVILVVNKIDNLKAE--ELAYEFYSLGF--GEP 142 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCCEEEEEEcccCchhh--hhHHHHHhcCC--CCc
Confidence 455678999999999999999999999999999999999998 6679999999999987433 22346665554 367
Q ss_pred EEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhh
Q psy3589 262 LCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEK 341 (604)
Q Consensus 262 v~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~ 341 (604)
+++||. ++.|+.+|++++...++ ..+ +. .++
T Consensus 143 ~~ISA~----------------------------Hg~Gi~dLld~v~~~l~-~~e----------------~~-~~~--- 173 (444)
T COG1160 143 VPISAE----------------------------HGRGIGDLLDAVLELLP-PDE----------------EE-EEE--- 173 (444)
T ss_pred eEeehh----------------------------hccCHHHHHHHHHhhcC-Ccc----------------cc-ccc---
Confidence 889985 78899999999988654 110 00 000
Q ss_pred hhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEec
Q psy3589 342 VEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCD 418 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D 418 (604)
....+++++|||.||+|||||+|+|+|...+-++.++|+|++.-...+ .+...++|
T Consensus 174 ---------------------~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liD 232 (444)
T COG1160 174 ---------------------EETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLID 232 (444)
T ss_pred ---------------------ccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEE
Confidence 002458999999999999999999999999999999999998654332 45578999
Q ss_pred CCCccCCC
Q psy3589 419 CPGLVFPS 426 (604)
Q Consensus 419 ~pGl~~p~ 426 (604)
|.|+.-..
T Consensus 233 TAGiRrk~ 240 (444)
T COG1160 233 TAGIRRKG 240 (444)
T ss_pred CCCCCccc
Confidence 99987543
No 107
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=9.3e-19 Score=176.86 Aligned_cols=176 Identities=17% Similarity=0.077 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE---E------Ee-cCCeEEecCCCccCCCCCChhhhHh-h
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT---I------FL-TDNIRLCDCPGLVFPSKVPKPLQVL-M 436 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~---~------~~-~~~~~l~D~pGl~~p~~~~~~~~~l-~ 436 (604)
-.++|+|+||||||||+++|+|+..+..|.+...+..+.. . .. ....++.+.+.+.........+... .
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 3699999999999999999999999988877554433210 0 00 0112233333322111111111000 0
Q ss_pred cccccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhcccee
Q psy3589 437 GSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRI 516 (604)
Q Consensus 437 g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l 516 (604)
....... ......+..++..+++.. .+ ......+|||+.++..+|++++.+
T Consensus 109 ~~~~~~~-~~~~~~~~~~l~~~gl~~--------------------~~--~~~~~~LS~G~~qrv~laral~~~------ 159 (242)
T PRK11124 109 RVLGLSK-DQALARAEKLLERLRLKP--------------------YA--DRFPLHLSGGQQQRVAIARALMME------ 159 (242)
T ss_pred HHcCCCH-HHHHHHHHHHHHHcCChh--------------------hh--hCChhhCCHHHHHHHHHHHHHhcC------
Confidence 0000000 000011111222222111 01 111224678999999999999555
Q ss_pred eeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 517 CLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 517 ~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|+++||||| |++||+.++..+.++ ..+.+.+.|||+||||..++..+ ....+|...
T Consensus 160 ------p~llilDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 160 ------PQVLLFDEP-TAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred ------CCEEEEcCC-CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999 999999999999888 45555689999999999998764 233455544
No 108
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.77 E-value=1.1e-18 Score=171.49 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCCe-EEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+||+|||||+++|+|+.++..|.+...+...... .....+ ++.+.+++.+... ....+.... . .
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t--v~e~l~~~~-~---~ 100 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS--VLENLRFWH-A---D 100 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcC--HHHHHHhhc-c---c
Confidence 47999999999999999999999999888775443332110 011112 2223333221111 111110000 0 0
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
. ....+..++..+++.... ......+|||+.++..+|++++.+ |+
T Consensus 101 ~-~~~~~~~~l~~~~l~~~~----------------------~~~~~~LS~G~~qrl~laral~~~------------p~ 145 (201)
T cd03231 101 H-SDEQVEEALARVGLNGFE----------------------DRPVAQLSAGQQRRVALARLLLSG------------RP 145 (201)
T ss_pred c-cHHHHHHHHHHcCChhhh----------------------cCchhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 0 112223333333221110 112234678999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++||||| |++||+..+..+.++ ..+.+.|.|+||||||..+...+
T Consensus 146 llllDEP-t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 191 (201)
T cd03231 146 LWILDEP-TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEA 191 (201)
T ss_pred EEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhc
Confidence 9999999 999999999999888 44555689999999998876554
No 109
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.77 E-value=4.9e-19 Score=188.32 Aligned_cols=165 Identities=14% Similarity=0.092 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCC-eEEecCCCccCCCCCChhhhHhhcccccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL- 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l- 444 (604)
-.++|+|||||||||||++|+|+..++.|.+...++.+..... ... .++.+.+.++ |.. +....+..+... ...
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lf-p~~-tv~eNi~~~~~~-~~~~ 107 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALF-PNL-TVADNIAYGLKN-RGMG 107 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccC-CCC-cHHHHHHHHHHh-cCCC
Confidence 3699999999999999999999999998887655544321110 111 2333433332 221 111111111100 000
Q ss_pred -cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 445 -REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 445 -~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+..+++.+++..++ .+....+|||+.++.++||+|+.+ |
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~----------------------~~~~~~LSgGq~QRvaLARaL~~~------------P 153 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSE----------------------RKYPGQLSGGQQQRVALARALATS------------P 153 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchh----------------------hCChhhCCHHHHHHHHHHHHHhcC------------C
Confidence 00011223333333321111 122234679999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~ 570 (604)
+++||||| +++||...+..+... ..+ ++.+.|+|+||||.+++..+
T Consensus 154 ~llLLDEP-~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l 201 (353)
T TIGR03265 154 GLLLLDEP-LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSM 201 (353)
T ss_pred CEEEEcCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 99999999 999999999888877 444 34589999999999999776
No 110
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.4e-19 Score=180.06 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC-CeEEecCCCccCCCCCChhhhHhhcccc---ccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFP---IAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~---i~~ 443 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+....... ..++.+.+.+.+.........+..+.+. ...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 469999999999999999999999998887754443321100011 1222233322111100000011101000 000
Q ss_pred cc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 LR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.. .....+..++..+++... . ......+|||+.++..+|++++.+
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~--------------------~--~~~~~~LSgG~~qrv~laraL~~~----------- 160 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEF--------------------R--HRQIGELSGGQKKRVFLARAIAQQ----------- 160 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhH--------------------h--cCCcccCCHHHHHHHHHHHHHhcC-----------
Confidence 00 001112222333222111 1 112234679999999999999555
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+...|.|||+||||++++..+
T Consensus 161 -p~llllDEP-t~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 161 -GQVILLDEP-FTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF 208 (272)
T ss_pred -CCEEEEeCC-CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 45555689999999999988765
No 111
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.77 E-value=1.3e-18 Score=173.77 Aligned_cols=167 Identities=15% Similarity=0.093 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhccccc-ccc--
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPI-AQL-- 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i-~~l-- 444 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+...... .....++.+.+.+.+.........+..+.... ...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-WRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHh-hCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 36999999999999999999999999888776554432110 01112333333332111111111111111000 000
Q ss_pred c--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 445 R--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 445 ~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+..+++.+++... . ....-.+|||+.++..+|++++.+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qrv~laral~~~------------ 131 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTEL--------------------A--DRPVGELSGGQRQRVLVARALATR------------ 131 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchh--------------------h--cCChhhCCHHHHHHHHHHHHHhcC------------
Confidence 0 001112223333222110 0 111123568999999999999555
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+.+.||||||||++++..+
T Consensus 132 p~llilDEP-~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~ 179 (223)
T TIGR03771 132 PSVLLLDEP-FTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMAT 179 (223)
T ss_pred CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 55555689999999999988765
No 112
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=7.3e-19 Score=181.06 Aligned_cols=175 Identities=19% Similarity=0.135 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCC-eEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.++|+|+||+||||||++|+|+.++..|.+...+..+.... .... .++.+.|...+... .....+..+....
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~enl~~~~~~~- 106 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR-TVEEDLAFGPENL- 106 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc-hHHHHHHhhHHHc-
Confidence 369999999999999999999999998887755444322110 0111 22333332211110 1111110000000
Q ss_pred ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... .....+..++..+++... . ......+|||+.++..+|++++.+
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~--------------------~--~~~~~~LS~G~~qrv~laral~~~---------- 154 (274)
T PRK13644 107 CLPPIEIRKRVDRALAEIGLEKY--------------------R--HRSPKTLSGGQGQCVALAGILTME---------- 154 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHH--------------------h--cCCcccCCHHHHHHHHHHHHHHcC----------
Confidence 000 000112222222222111 0 111223568999999999999655
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEET 579 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~ 579 (604)
|+++||||| |++||+.++..+.++ ..+...|.|||++|||++++..+++ ..+|...
T Consensus 155 --p~lllLDEP-t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 155 --PECLIFDEV-TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214 (274)
T ss_pred --CCEEEEeCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEE
Confidence 999999999 999999999888887 4555568999999999999865433 3455543
No 113
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.77 E-value=1.5e-18 Score=172.00 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCCeEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+.++... ......++.+.+.+........ .+.....+.....
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e--n~~~~~~~~~~~~ 102 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ--NIGLGLHPGLKLN 102 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH--HHHhHhhccCCcc
Confidence 46999999999999999999999999888776544432111 0011223344444322111111 1111100000000
Q ss_pred -CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 -EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 -~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+..++..+++.... .+....+|||+.++..+|++++.+ |+
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~LS~G~~qrl~laral~~~------------p~ 148 (213)
T TIGR01277 103 AEQQEKVVDAAQQVGIADYL----------------------DRLPEQLSGGQRQRVALARCLVRP------------NP 148 (213)
T ss_pred HHHHHHHHHHHHHcCcHHHh----------------------hCCcccCCHHHHHHHHHHHHHhcC------------CC
Confidence 0011122233332221110 112224678999999999999554 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
++||||| |++||..++..+.++ ..+.+ .+.|||+|||+.+++..+
T Consensus 149 llllDEP-t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~ 195 (213)
T TIGR01277 149 ILLLDEP-FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI 195 (213)
T ss_pred EEEEcCC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 9999999 999999999988887 44443 488999999999998764
No 114
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=6.6e-19 Score=189.54 Aligned_cols=167 Identities=14% Similarity=-0.010 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--------cCCeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--------TDNIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--------~~~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.++|+|+|||||||||++|+|+..++.|.+...+..+..... ....++.+.++++........+.......
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 3599999999999999999999999998887655443321100 11234444444332212111111100000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++.... .+....+|||+.++..+|++++.+
T Consensus 135 ~~~~-~~~~~~~~e~L~~~gL~~~~----------------------~~~~~~LSgGq~QRv~LArAL~~~--------- 182 (400)
T PRK10070 135 GINA-EERREKALDALRQVGLENYA----------------------HSYPDELSGGMRQRVGLARALAIN--------- 182 (400)
T ss_pred CCCH-HHHHHHHHHHHHHcCCChhh----------------------hcCcccCCHHHHHHHHHHHHHhcC---------
Confidence 0000 00011122233333221110 111223679999999999999665
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+. +.+.||||||||++++..+
T Consensus 183 ---P~iLLLDEP-ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 183 ---PDILLMDEA-FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred ---CCEEEEECC-CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 999999999 999999999999887 4443 3589999999999998765
No 115
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.77 E-value=7.1e-19 Score=188.23 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cC-CeEEecCCCccCCCCCChhhhHhhccccccccc-
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR- 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~- 445 (604)
.++|+|+|||||||||++|+|+.+++.|.+...+..+..... .. ..++.+.+.+ ||.. .....+..+.. .....
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~l-fp~l-tv~eNi~~~l~-~~~~~~ 118 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYAL-FPHM-TVFENVAFGLR-MQKTPA 118 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccc-CCCC-CHHHHHHHHHh-hcCCCH
Confidence 689999999999999999999999998887655554321110 11 1233333333 2221 11111111110 00000
Q ss_pred -CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 -EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 -~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+..+++.+++..++ .+...++|||+.++..+||+|+.+ |+
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~----------------------~~~p~~LSgGq~QRVaLARaL~~~------------P~ 164 (375)
T PRK09452 119 AEITPRVMEALRMVQLEEFA----------------------QRKPHQLSGGQQQRVAIARAVVNK------------PK 164 (375)
T ss_pred HHHHHHHHHHHHHcCCchhh----------------------hCChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 0011222333333222111 112224679999999999999666 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| +++||...+..|... ..+. +.|.|+|+||||..++..+
T Consensus 165 llLLDEP-~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~l 211 (375)
T PRK09452 165 VLLLDES-LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM 211 (375)
T ss_pred EEEEeCC-CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 9999999 999999999888877 4443 4589999999999998776
No 116
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.77 E-value=1.5e-18 Score=174.86 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCCeE-Ee-cCCCccCCCC-CChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDNIR-LC-DCPGLVFPSK-VPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~~~-l~-D~pGl~~p~~-~~~~~~~l~g~~~i~ 442 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+...... .....+. +. +.+.+ ++.. ...............
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~tv~e~l~~~~~~~~~~ 126 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL-WWDLPVIDSFYLLAAIYDLP 126 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcccc-CCCCcHHHHHHHHHHHcCCC
Confidence 46999999999999999999999999888775444322110 0011122 22 21222 1111 111111111100000
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. ......+..++..+++... . ......+|||+.++..+|++++.+
T Consensus 127 ~-~~~~~~~~~~l~~~gl~~~--------------------~--~~~~~~LS~G~~qrl~la~al~~~------------ 171 (236)
T cd03267 127 P-ARFKKRLDELSELLDLEEL--------------------L--DTPVRQLSLGQRMRAEIAAALLHE------------ 171 (236)
T ss_pred H-HHHHHHHHHHHHHcCChhH--------------------h--cCChhhCCHHHHHHHHHHHHHhcC------------
Confidence 0 0000111222222221110 0 111223568889999999888555
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+
T Consensus 172 p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 172 PEILFLDEP-TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL 220 (236)
T ss_pred CCEEEEcCC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence 999999999 999999999999988 44433 478999999999998765
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8e-19 Score=177.39 Aligned_cols=177 Identities=15% Similarity=0.051 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
.+||+|+||+|||||+++|+|+.++..|.+...+..+.... .... .++.+.+++.........+...........
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~- 107 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK- 107 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH-
Confidence 58999999999999999999999998887654443321110 0111 223333332211111111110000000000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++.. . .+ .......+|||+.++..+|++++.. |+
T Consensus 108 ~~~~~~~~~~l~~l~l~~---------------~----~~-~~~~~~~LS~G~~qrv~laral~~~------------p~ 155 (242)
T cd03295 108 EKIRERADELLALVGLDP---------------A----EF-ADRYPHELSGGQQQRVGVARALAAD------------PP 155 (242)
T ss_pred HHHHHHHHHHHHHcCCCc---------------H----HH-HhcChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 000011122222222110 0 00 1122234678999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
++||||| |++||+.++..+.++ ..+.. .|.||||||||..++..+ ....+|...
T Consensus 156 llllDEP-t~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 156 LLLMDEP-FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215 (242)
T ss_pred EEEecCC-cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 999999999998887 44443 489999999999987654 344555543
No 118
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8.8e-19 Score=181.65 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-------EecCC-eEEecCCC-ccCCCCCChhhhHhhcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-------FLTDN-IRLCDCPG-LVFPSKVPKPLQVLMGS 438 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-------~~~~~-~~l~D~pG-l~~p~~~~~~~~~l~g~ 438 (604)
-.+||+|+||+||||||++|+|+.+++.|.+...+..+... ..... .++.+.|. ..++. .....+..+.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~--tv~e~l~~~~ 111 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN--TVLKDVEFGP 111 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc--hHHHHHHHHH
Confidence 36999999999999999999999999988776554433110 00011 22333321 11111 1111111000
Q ss_pred ccccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhcccee
Q psy3589 439 FPIAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRI 516 (604)
Q Consensus 439 ~~i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l 516 (604)
.. .... .....+..++..+++. ..+ ..+....+|||+.++..+|++++.+
T Consensus 112 ~~-~~~~~~~~~~~~~~~l~~~gL~--------------------~~~-~~~~~~~LSgGq~qrl~laral~~~------ 163 (287)
T PRK13641 112 KN-FGFSEDEAKEKALKWLKKVGLS--------------------EDL-ISKSPFELSGGQMRRVAIAGVMAYE------ 163 (287)
T ss_pred HH-cCCCHHHHHHHHHHHHHHcCCC--------------------hhH-hhCCcccCCHHHHHHHHHHHHHHcC------
Confidence 00 0000 0001111222222110 000 1122234679999999999999665
Q ss_pred eeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 517 CLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 517 ~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ ...++|....
T Consensus 164 ------p~lLlLDEP-t~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 164 ------PEILCLDEP-AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred ------CCEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 55555689999999999998765 2335665543
No 119
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.2e-18 Score=182.00 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=62.5
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |++|||||| |++||+..+..+.++ ..+++.|.||||||||++++..
T Consensus 164 ~~LSgGqkqrvalA~aL~~~------------P~lLlLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 164 FELSGGQKRRVALAGILAME------------PDFLVFDEP-TAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhC------------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 34679999999999999666 999999999 999999999998887 5555568999999999998866
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ....+|....
T Consensus 231 ~adrv~vl~~G~i~~ 245 (305)
T PRK13651 231 WTKRTIFFKDGKIIK 245 (305)
T ss_pred hCCEEEEEECCEEEE
Confidence 4 2335565543
No 120
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.76 E-value=1e-18 Score=178.17 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=63.5
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+.|.|||+||||+.++..
T Consensus 151 ~~LS~G~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAME------------PEVLLFDEP-TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 217 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34679999999999999665 999999999 999999999999888 5565568999999999999886
Q ss_pred h-h---hhccCCCcc
Q psy3589 570 V-K---RKHKGEETE 580 (604)
Q Consensus 570 ~-~---~~~~~~~~~ 580 (604)
+ . ...+|....
T Consensus 218 ~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 218 VSSHVIFLHQGKIEE 232 (257)
T ss_pred hcCEEEEEECCEEEE
Confidence 5 3 335665553
No 121
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.76 E-value=1.5e-18 Score=185.13 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-------EecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-------FLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-------~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
.++|+|+|||||||||++|+|+.+++.|.+...+..+... ..... .++.+.+.++ +.. .....+..+...
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~-~~~-tv~enl~~~~~~ 102 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLF-PHL-SVRGNLRYGMKR 102 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccC-CCC-cHHHHHHHHhhc
Confidence 6899999999999999999999999888875544433210 00111 2333444332 211 111111111000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
. ........+..++..+++.... .+...++|||+.++..+|++++.+
T Consensus 103 ~-~~~~~~~~~~~~l~~~gL~~~~----------------------~~~~~~LSgGqkqRvalAraL~~~---------- 149 (354)
T TIGR02142 103 A-RPSERRISFERVIELLGIGHLL----------------------GRLPGRLSGGEKQRVAIGRALLSS---------- 149 (354)
T ss_pred c-ChhHHHHHHHHHHHHcCChhHh----------------------cCChhhCCHHHHHHHHHHHHHHcC----------
Confidence 0 0000011122233332221111 122234679999999999999665
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+
T Consensus 150 --p~lllLDEP-ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~ 198 (354)
T TIGR02142 150 --PRLLLMDEP-LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL 198 (354)
T ss_pred --CCEEEEcCC-CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 999999999 999999999888887 44444 489999999999998765
No 122
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-18 Score=174.60 Aligned_cols=175 Identities=17% Similarity=0.088 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCeEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+..+.... .....++.+.+++. +.. .....+..+..+.....
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~-~~~-tv~e~l~~~~~~~~~~~ 103 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLF-SHL-TVAQNIGLGLNPGLKLN 103 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccc-cCC-cHHHHHhcccccccCCC
Confidence 369999999999999999999999998887755443322110 01112333334322 211 11111111110000000
Q ss_pred -CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 -EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 -~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+..++..+++... . ......+|||+.++..+|++++.+ |+
T Consensus 104 ~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qrv~laral~~~------------p~ 149 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDL--------------------L--ARLPGQLSGGQRQRVALARCLVRE------------QP 149 (232)
T ss_pred HHHHHHHHHHHHHcCcHHH--------------------H--hCCcccCCHHHHHHHHHHHHHhcC------------CC
Confidence 001112223333322111 1 111223679999999999999655 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh-h---hhccCCCc
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV-K---RKHKGEET 579 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~-~---~~~~~~~~ 579 (604)
++||||| |++||+.++..+.++ ..+. +.|.|||+||||++++..+ . ..++|...
T Consensus 150 lllLDEP-~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 150 ILLLDEP-FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred EEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 999999999888887 4443 3488999999999998765 2 33555544
No 123
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.76 E-value=1.5e-18 Score=176.57 Aligned_cols=75 Identities=12% Similarity=0.048 Sum_probs=59.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.. |+++||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..
T Consensus 146 ~LS~G~~qrv~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMR------------PKVMLFDEV-TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE 212 (252)
T ss_pred hcCHHHHHHHHHHHHHHcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 4678999999999998555 999999999 999999999988887 44443 48999999999999865
Q ss_pred h----hhhccCCCc
Q psy3589 570 V----KRKHKGEET 579 (604)
Q Consensus 570 ~----~~~~~~~~~ 579 (604)
+ ....+|...
T Consensus 213 ~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 213 FADRVCFFDKGRIV 226 (252)
T ss_pred hcCEEEEEECCEEE
Confidence 4 233555543
No 124
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.76 E-value=1.6e-18 Score=176.96 Aligned_cols=182 Identities=19% Similarity=0.170 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+.+... ....+..+......
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t--v~e~l~~~~~~~~~ 106 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT--VEEVVAMGRAPHGL 106 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC--HHHHHHhhhcccCC
Confidence 369999999999999999999999998887754443321110 0011 12233333222111 11111111100000
Q ss_pred -ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 444 -LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 444 -l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.......+..++..+++... . .....++|||+.++..+|++++.... --.+
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LSgGe~qrv~la~al~~~~~------~~~~ 158 (258)
T PRK13548 107 SRAEDDALVAAALAQVDLAHL--------------------A--GRDYPQLSGGEQQRVQLARVLAQLWE------PDGP 158 (258)
T ss_pred CcHHHHHHHHHHHHHcCCHhH--------------------h--cCCcccCCHHHHHHHHHHHHHhcccc------cCCC
Confidence 00001112222222222110 0 11223467999999999999952000 0024
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+. +.+.||||||||++++..+ ...++|....
T Consensus 159 p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 159 PRWLLLDEP-TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999 999999999888887 4454 5689999999999998765 2335666543
No 125
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.76 E-value=1.8e-18 Score=169.54 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCe-EEecCCCccCCCC-CChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNI-RLCDCPGLVFPSK-VPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~-~l~D~pGl~~p~~-~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||+|||||+++|+|..++..|.+...+..+.... ....+ ++.+.+.+ ++.. .............
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-~~~~tv~~~l~~~~~~~~--- 102 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGL-KPELSALENLHFWAAIHG--- 102 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCccc-ccCCcHHHHHHHHHHHcC---
Confidence 469999999999999999999999998887654443322111 00111 22222222 1111 0111110000000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++.... ......+|||+.++..+|++++.+ |
T Consensus 103 --~~~~~~~~~l~~~~l~~~~----------------------~~~~~~LS~G~~qrv~la~al~~~------------p 146 (198)
T TIGR01189 103 --GAQRTIEDALAAVGLTGFE----------------------DLPAAQLSAGQQRRLALARLWLSR------------A 146 (198)
T ss_pred --CcHHHHHHHHHHcCCHHHh----------------------cCChhhcCHHHHHHHHHHHHHhcC------------C
Confidence 0011122233332221110 111223568999999999998555 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
++++|||| |++||..++..+.++ ..+.+.|.|||+|||+...+.
T Consensus 147 ~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 147 PLWILDEP-TTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred CEEEEeCC-CcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 99999999 999999999999888 444456889999999986543
No 126
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2e-18 Score=175.74 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=61.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ .|.|||+|||++.++..
T Consensus 153 ~LS~G~~qrv~la~al~~~------------p~llllDEP-t~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQ------------PEILMLDEP-AAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred hCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH
Confidence 3578999999999988555 999999999 999999999999887 44544 48999999999999877
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ....+|....
T Consensus 220 ~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 220 ISDRIYVVNQGTPLA 234 (255)
T ss_pred hCCEEEEEECCeEEe
Confidence 5 2335565544
No 127
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.76 E-value=1.2e-18 Score=183.91 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------e-cCCeEEecCCC-ccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------L-TDNIRLCDCPG-LVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~-~~~~~l~D~pG-l~~p~~~~~~~~~l~g~~ 439 (604)
-.+||+|+||||||||+++|+|+..++.|.+...+.++.... + ....++.+.|. ..+|.. .....+.....
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~-tv~~~i~~~l~ 126 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM-TIGEIIAEPLR 126 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC-CHHHHHHHHHH
Confidence 369999999999999999999999998887765554432111 0 11223344442 122221 11111110000
Q ss_pred ccc-ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhcccee
Q psy3589 440 PIA-QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRI 516 (604)
Q Consensus 440 ~i~-~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l 516 (604)
... .+. .....+..+++.+++. ..+. .+....+|||+.++..+|++++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~vgl~--------------------~~~~-~~~p~~LSgG~~QRv~iArAL~~~------ 179 (331)
T PRK15079 127 TYHPKLSRQEVKDRVKAMMLKVGLL--------------------PNLI-NRYPHEFSGGQCQRIGIARALILE------ 179 (331)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCC--------------------hHHh-cCCcccCCHHHHHHHHHHHHHhcC------
Confidence 000 000 0011122222222220 0001 112224679999999999999655
Q ss_pred eeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 517 CLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 517 ~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++||+||| |++||+.++..+.++ ..+.+ .+.||||||||+.++..+ ..-++|...+
T Consensus 180 ------P~llilDEP-ts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 180 ------PKLIICDEP-VSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred ------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999888887 45544 589999999999999875 2335565544
No 128
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.76 E-value=2.1e-18 Score=172.91 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCC-eEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+....... .... .++.+.+.+ ++.. .....+..+.....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~-~~~~-tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREI-FPRL-TVEENLLTGLAALP 104 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcc-cCCC-cHHHHHHHHHHhcC
Confidence 469999999999999999999999998887654433221100 0011 122233322 1111 00000000000000
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+..++.. .+.+... .......+|||+.++..+|++++.+
T Consensus 105 -~-~~~~~~~~~l~~--------------------~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~~------------ 149 (230)
T TIGR03410 105 -R-RSRKIPDEIYEL--------------------FPVLKEM-LGRRGGDLSGGQQQQLAIARALVTR------------ 149 (230)
T ss_pred -c-chHHHHHHHHHH--------------------HHhHHHH-hhCChhhCCHHHHHHHHHHHHHhcC------------
Confidence 0 000000111111 1101111 1223334679999999999999555
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|+++||||| |++||+.++..+.++ ..+.+ .+.||||||||++++..+ . ...+|....
T Consensus 150 p~illlDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 150 PKLLLLDEP-TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212 (230)
T ss_pred CCEEEecCC-cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999887 44444 489999999999998764 2 334555443
No 129
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-18 Score=180.23 Aligned_cols=175 Identities=15% Similarity=0.094 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe----cCCeEEecCCC-ccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL----TDNIRLCDCPG-LVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~----~~~~~l~D~pG-l~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+..+..... ....++.+.|. .++.... ...+..+... .
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv--~eni~~~~~~-~ 110 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV--EDDVAFGLEN-K 110 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH--HHHHHhhHHh-C
Confidence 3699999999999999999999999988877555443321100 01122333321 1111111 1111111000 0
Q ss_pred ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
.+. .....+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~--------------------~--~~~~~~LSgGq~qrv~lAral~~~---------- 158 (279)
T PRK13650 111 GIPHEEMKERVNEALELVGMQDF--------------------K--EREPARLSGGQKQRVAIAGAVAMR---------- 158 (279)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhH--------------------h--hCCcccCCHHHHHHHHHHHHHHcC----------
Confidence 000 000112222222222111 1 112234679999999999999666
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhhh---hccCCCcc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVKR---KHKGEETE 580 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~~---~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.. .|.|||+||||++++..+.+ .++|....
T Consensus 159 --p~lLlLDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~ 220 (279)
T PRK13650 159 --PKIIILDEA-TSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVES 220 (279)
T ss_pred --CCEEEEECC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999998887 55544 48999999999999854433 35665543
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.6e-18 Score=179.16 Aligned_cols=75 Identities=17% Similarity=0.026 Sum_probs=60.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.+.||||||||++++..+
T Consensus 145 ~LSgG~~qrv~la~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~ 211 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAME------------PKILVLDEP-TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY 211 (280)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence 4679999999999999655 999999999 999999999999888 44545589999999999988765
Q ss_pred ----hhhccCCCc
Q psy3589 571 ----KRKHKGEET 579 (604)
Q Consensus 571 ----~~~~~~~~~ 579 (604)
....+|...
T Consensus 212 ~d~i~~l~~G~i~ 224 (280)
T PRK13649 212 ADFVYVLEKGKLV 224 (280)
T ss_pred CCEEEEEECCEEE
Confidence 234455543
No 131
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=9.7e-19 Score=181.44 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-------EecC-CeEEecCCC-ccCCCCCChhhhHhhcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-------FLTD-NIRLCDCPG-LVFPSKVPKPLQVLMGS 438 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-------~~~~-~~~l~D~pG-l~~p~~~~~~~~~l~g~ 438 (604)
-.++|+|+||||||||+++|+|+..++.|.+...+..+... .... ..++.+.|. ..++.. ....+..+.
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~t--v~~~l~~~~ 110 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEET--VLKDVAFGP 110 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccch--HHHHHHhHH
Confidence 36999999999999999999999999988775544432110 0011 122333331 111111 111111110
Q ss_pred ccccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhcccee
Q psy3589 439 FPIAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRI 516 (604)
Q Consensus 439 ~~i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l 516 (604)
... ... .....+..++..+++. ..+ ..+....+|||+.++..+|++++.+
T Consensus 111 ~~~-~~~~~~~~~~~~~~l~~~~L~--------------------~~~-~~~~~~~LSgGqkqrvaiA~aL~~~------ 162 (288)
T PRK13643 111 QNF-GIPKEKAEKIAAEKLEMVGLA--------------------DEF-WEKSPFELSGGQMRRVAIAGILAME------ 162 (288)
T ss_pred HHc-CCCHHHHHHHHHHHHHHcCCC--------------------hhh-ccCCcccCCHHHHHHHHHHHHHHhC------
Confidence 000 000 0000111122222110 000 0122334679999999999999665
Q ss_pred eeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 517 CLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 517 ~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..|.++ ..+++.|.|||+||||++++..+ .....|....
T Consensus 163 ------p~illLDEP-t~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 163 ------PEVLVLDEP-TAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred ------CCEEEEECC-ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 55555689999999999988654 3335555543
No 132
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.76 E-value=1.8e-18 Score=177.33 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCc-cCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGL-VFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl-~~p~~~~~~~~~l~g~~ 439 (604)
-.+||+|+|||||||||++|+|+.++..|.+...+..+.... .... .++.+.+.. +++.. .....+.....
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~-tv~~~l~~~~~ 116 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM-TVRQIIGEPLR 116 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC-CHHHHHHHHHH
Confidence 369999999999999999999999998887755443322110 0111 223333321 11111 11111100000
Q ss_pred cccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 440 PIAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 440 ~i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
....+. .....+..+++.+++. ..+ .......+|||+.++..+|++++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~l~~~gl~--------------------~~~-~~~~~~~LSgGe~qrv~laral~~~------- 168 (265)
T TIGR02769 117 HLTSLDESEQKARIAELLDMVGLR--------------------SED-ADKLPRQLSGGQLQRINIARALAVK------- 168 (265)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCC--------------------hhh-hhCChhhCCHHHHHHHHHHHHHhcC-------
Confidence 000000 0001112222222110 000 0112223679999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.+...+.++ ..+.+ .|.||||||||++++..+ ....+|....
T Consensus 169 -----p~illLDEP-t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 169 -----PKLIVLDEA-VSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred -----CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 999999999 999999998888877 44443 489999999999998764 2335555543
No 133
>KOG2485|consensus
Probab=99.76 E-value=1.3e-17 Score=168.07 Aligned_cols=212 Identities=24% Similarity=0.288 Sum_probs=148.3
Q ss_pred CCCCCcch-hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHH
Q psy3589 175 WKDLSYFE-LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQ 253 (604)
Q Consensus 175 ~~~lt~fE-~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~ 253 (604)
....+||. |+-...|++..-+..+|+||.|.|||.|++++++.+.+++. .|+.|||+||+||+++.+.....+||.
T Consensus 23 ~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~---~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485|consen 23 NMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP---PKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred CCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC---CCceEEEEecccccCchhhhHHHHHHH
Confidence 45689999 88899999999999999999999999999999999999886 689999999999999877788888887
Q ss_pred hhCCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhccc
Q psy3589 254 SKFPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYE 333 (604)
Q Consensus 254 ~~~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~ 333 (604)
.+. ...+++.++... ...++..++..+..+.. +..
T Consensus 100 ~~~-~~~~~~~~c~~~--------------------------~~~~v~~l~~il~~~~~----------~l~-------- 134 (335)
T KOG2485|consen 100 WQN-LESYIKLDCNKD--------------------------CNKQVSPLLKILTILSE----------ELV-------- 134 (335)
T ss_pred hhc-ccchhhhhhhhh--------------------------hhhccccHHHHHHHHHH----------HHH--------
Confidence 763 112222222100 11122233322211100 000
Q ss_pred chhhhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCC-----CCccccCcCcccceeEE-
Q psy3589 334 DVEEEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGR-----KVVSVSRTPGHTKHFQT- 407 (604)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~-----~~~~~g~i~g~t~~~q~- 407 (604)
...+.......+.+||-||+|||||||++... ....+|..||.|+.++.
T Consensus 135 -------------------------r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~ 189 (335)
T KOG2485|consen 135 -------------------------RFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER 189 (335)
T ss_pred -------------------------HhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh
Confidence 00011234578999999999999999998643 35678999999998865
Q ss_pred EE--ecCCeEEecCCCccCCCCCChhhh---HhhcccccccccCchHHHHHHHHhcCH
Q psy3589 408 IF--LTDNIRLCDCPGLVFPSKVPKPLQ---VLMGSFPIAQLREPYSTVQYLAERMDL 460 (604)
Q Consensus 408 ~~--~~~~~~l~D~pGl~~p~~~~~~~~---~l~g~~~i~~l~~~~~~i~~l~~~~~l 460 (604)
+. -...++++||||+..|+....... .++|+.. +.+......+++++..++.
T Consensus 190 iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vk-d~~V~~~~~adylL~~lN~ 246 (335)
T KOG2485|consen 190 IRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVK-DHLVGEETIADYLLYLLNS 246 (335)
T ss_pred eEeccCCceEEecCCCcCCCCCCCHHHhhhhhhccccc-ccccCHHHHHHHHHHHHhc
Confidence 33 345689999999999987654433 3455543 4455566677777766553
No 134
>PRK00098 GTPase RsgA; Reviewed
Probab=99.76 E-value=6.9e-18 Score=175.73 Aligned_cols=143 Identities=22% Similarity=0.272 Sum_probs=108.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHhh--ccCCCcEEEEEeCCCCC-CHHhHHHHHHHHHhhCCCceEEEEeeccC
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYVT--GTLGKDMILVMNKIDLA-PAPLVLAWKHYFQSKFPKLTILCFTSYPT 269 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~--~~~~K~~ILVlNK~DLv-~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~ 269 (604)
.++..+|++|+|+|+.+|.++ ...+++|+. ...++|+|+|+||+||+ .......|..++... +..++++||.
T Consensus 76 ~iaaniD~vllV~d~~~p~~~-~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~--g~~v~~vSA~-- 150 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFS-TDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAI--GYDVLELSAK-- 150 (298)
T ss_pred ceeecCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC--CCeEEEEeCC--
Confidence 357999999999999988644 233556653 24578999999999997 444556788887654 3578888886
Q ss_pred cccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhh
Q psy3589 270 YNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIE 349 (604)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (604)
++.|+++|.+.+.
T Consensus 151 --------------------------~g~gi~~L~~~l~----------------------------------------- 163 (298)
T PRK00098 151 --------------------------EGEGLDELKPLLA----------------------------------------- 163 (298)
T ss_pred --------------------------CCccHHHHHhhcc-----------------------------------------
Confidence 4456666654321
Q ss_pred hhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCCCc
Q psy3589 350 LKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCPGL 422 (604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~pGl 422 (604)
+ ..++|+|+||||||||||+|+|.....+|.+++ +|++.+.+.+....+++|+||+
T Consensus 164 ----------------g-k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~ 226 (298)
T PRK00098 164 ----------------G-KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGF 226 (298)
T ss_pred ----------------C-ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCc
Confidence 1 368999999999999999999999888888875 5566666667777899999999
Q ss_pred cC
Q psy3589 423 VF 424 (604)
Q Consensus 423 ~~ 424 (604)
..
T Consensus 227 ~~ 228 (298)
T PRK00098 227 SS 228 (298)
T ss_pred Cc
Confidence 73
No 135
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.8e-18 Score=184.29 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=99.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-------EecCCe-EEecCCCccCCCCCChhhhHhhcccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-------FLTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-------~~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
.++|+|+||||||||+++|+|+..++.|.+...+..+... .....+ ++.+.+.+ ++.. .....+..+..
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l-~~~~-tv~enl~~~~~- 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL-FPHY-KVRGNLRYGMA- 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCccc-CCCC-cHHHHHHhhhh-
Confidence 6999999999999999999999999888775544332110 001112 23333332 2211 11111111100
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
. .....+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 103 --~--~~~~~~~~~l~~~gl~~~--------------------~--~~~~~~LSgGq~qRvalaraL~~~---------- 146 (352)
T PRK11144 103 --K--SMVAQFDKIVALLGIEPL--------------------L--DRYPGSLSGGEKQRVAIGRALLTA---------- 146 (352)
T ss_pred --h--hhHHHHHHHHHHcCCchh--------------------h--hCCcccCCHHHHHHHHHHHHHHcC----------
Confidence 0 011122333333322111 1 112234679999999999999665
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+..+..+.++ ..+.+ .+.|||+||||++++..+
T Consensus 147 --p~llLLDEP-ts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~ 195 (352)
T PRK11144 147 --PELLLMDEP-LASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRL 195 (352)
T ss_pred --CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHh
Confidence 999999999 999999999988887 44443 489999999999998765
No 136
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.75 E-value=1.8e-18 Score=173.46 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc----cccCcCcccceeEEEEe--cCCeEEecCCCccCCCCCChhhhHhhc--cc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV----SVSRTPGHTKHFQTIFL--TDNIRLCDCPGLVFPSKVPKPLQVLMG--SF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~----~~g~i~g~t~~~q~~~~--~~~~~l~D~pGl~~p~~~~~~~~~l~g--~~ 439 (604)
-.++|+|+||+|||||+++|+|+.++ ..|.+...+..+..... ..-.++.+.+...+.........+... ..
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 92 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL 92 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence 36999999999999999999999988 67776544433221110 011233333321121111111110000 00
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... ......+..++..+++... ..+ .......+|||+.++..+|++++.+
T Consensus 93 ~~~~-~~~~~~~~~~l~~~~l~~~------------------~~~-~~~~~~~LS~G~~qrv~laral~~~--------- 143 (230)
T TIGR02770 93 GKLS-KQARALILEALEAVGLPDP------------------EEV-LKKYPFQLSGGMLQRVMIALALLLE--------- 143 (230)
T ss_pred CccH-HHHHHHHHHHHHHcCCCch------------------HHH-HhCChhhcCHHHHHHHHHHHHHhcC---------
Confidence 0000 0001112222222221100 000 1122234679999999999999555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|+++||||| |++||+.++..+.++ ..+.+ .+.|||+|||+++++..+ .....|...
T Consensus 144 ---p~vllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 144 ---PPFLIADEP-TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred ---CCEEEEcCC-ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999 999999999888887 44444 488999999999998764 233455544
No 137
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.3e-18 Score=179.60 Aligned_cols=173 Identities=15% Similarity=0.090 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cC-CeEEecCCC-ccCCCCCChhhhHhhccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TD-NIRLCDCPG-LVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~-~~~l~D~pG-l~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.+||+|+||+|||||+++|+|+.++..|.+...+..+..... .. ..++.+.+. +.+... ....+..+... ..
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t--v~enl~~~~~~-~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT--VQDDVAFGLEN-IG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc--HHHHHhhhHhh-CC
Confidence 599999999999999999999999998887655544321100 11 122333331 111111 11111111000 00
Q ss_pred cc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 LR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.. .....+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~--------------------~--~~~~~~LS~G~~qrv~laral~~~----------- 158 (279)
T PRK13635 112 VPREEMVERVDQALRQVGMEDF--------------------L--NREPHRLSGGQKQRVAIAGVLALQ----------- 158 (279)
T ss_pred CCHHHHHHHHHHHHHHcCChhh--------------------h--hCCcccCCHHHHHHHHHHHHHHcC-----------
Confidence 00 001112222232222111 1 111224678999999999999555
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
|++|||||| |++||+.++..|.++ ..+.+ .|.|||+||||++++..+.++ ..|...
T Consensus 159 -p~lllLDEP-t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~ 219 (279)
T PRK13635 159 -PDIIILDEA-TSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEIL 219 (279)
T ss_pred -CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 999999999 999999999999887 45544 489999999999998755433 445443
No 138
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=2.7e-19 Score=175.45 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC-----CeEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD-----NIRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~-----~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+|||||||+|||||+|+|+|.++|+.|.+...++++......+ -..-++.+-+ |+.. +....++.+...
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl-F~~l-TVlENv~va~~~-- 106 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL-FPGL-TVLENVAVGAHA-- 106 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccc-cCCC-cHHHHHHHHhhh--
Confidence 368999999999999999999999999998877666554332111 0111111111 1111 111111111000
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCC---CCcccccHHHHHHHH------HHhcchhhhccCcccHHHHHHHHHHhhcc
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHP---DDDEYWCAMDICDGW------AQKRSYMTAKTGRYDSYRAANELLRMATE 513 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p---~~~~~~~~~ell~~~------a~~rg~ls~sGG~~d~~~~Ar~ll~dlSg 513 (604)
+..+...+..... ..+....+.++++.. ....+- +++|++.+..+||+|
T Consensus 107 --------------~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~--LsyG~qR~LEIArAL------ 164 (250)
T COG0411 107 --------------RLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN--LSYGQQRRLEIARAL------ 164 (250)
T ss_pred --------------hhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc--CChhHhHHHHHHHHH------
Confidence 0000011100000 000011122222221 111222 346777777778777
Q ss_pred ceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhh
Q psy3589 514 GRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 514 G~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~ 571 (604)
+..|++|+|||| .+||.+.....+.++ ..+++ .|.||++|.||+..++.+.
T Consensus 165 ------a~~P~lLLLDEP-aAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~ 217 (250)
T COG0411 165 ------ATQPKLLLLDEP-AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLA 217 (250)
T ss_pred ------hcCCCEEEecCc-cCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhc
Confidence 555999999999 999999999888888 66665 5799999999999998873
No 139
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.5e-18 Score=167.38 Aligned_cols=65 Identities=18% Similarity=0.068 Sum_probs=56.6
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+. +.|+|+||||+.++..+
T Consensus 101 lS~G~~qr~~la~al~~~------------p~llilDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 101 LSGGQQQRVALARALAMD------------PDVLLLDEP-TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CCHHHHHHHHHHHHHHCC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 469999999999999665 999999999 999999999999887 445444 78999999999998754
No 140
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.9e-18 Score=181.51 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=63.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+...|.||||||||++++..
T Consensus 175 ~~LSgGqkqRvaiAraL~~~------------p~iLLLDEP-tsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQ------------PEILIFDEP-TAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLE 241 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcC------------CCEEEEECC-ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 34679999999999999665 999999999 999999999999888 4455568999999999998765
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ....+|....
T Consensus 242 ~adri~vl~~G~i~~ 256 (320)
T PRK13631 242 VADEVIVMDKGKILK 256 (320)
T ss_pred hCCEEEEEECCEEEE
Confidence 3 4555666554
No 141
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.4e-18 Score=183.25 Aligned_cols=179 Identities=15% Similarity=0.074 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCC-ccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPG-LVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pG-l~~p~~~~~~~~~l~g~~ 439 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+.++.... +... .++.+.|. ...|.. .....+.....
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~-~v~~~l~~~~~ 120 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRK-KVGQILEEPLL 120 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCcc-CHHHHHHHHHH
Confidence 369999999999999999999999988887755444332110 0111 22233332 111111 11111100000
Q ss_pred cccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 440 PIAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 440 ~i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
....+. .....+..+++.+++.. ..+ .+....+|||+.++..+|++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~gL~~-------------------~~~--~~~p~~LSgGq~QRv~iArAL~~~------- 172 (327)
T PRK11308 121 INTSLSAAERREKALAMMAKVGLRP-------------------EHY--DRYPHMFSGGQRQRIAIARALMLD------- 172 (327)
T ss_pred HccCCCHHHHHHHHHHHHHHCCCCh-------------------HHh--cCCCccCCHHHHHHHHHHHHHHcC-------
Confidence 000000 00112223333332210 001 111223679999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCccc
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETEE 581 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~ 581 (604)
|++||+||| |++||...+..+.++ ..+.+ .|.||||||||+.++..+ ..-+.|...+.
T Consensus 173 -----P~lLilDEP-ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 173 -----PDVVVADEP-VSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred -----CCEEEEECC-CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999 999999999988887 44544 589999999999999765 34466666543
No 142
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.75 E-value=2.9e-18 Score=173.20 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=57.0
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+.+.|||+||||++++..+
T Consensus 145 LS~G~~qrl~la~al~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~ 210 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLE------------PKLAILDEI-DSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210 (243)
T ss_pred cCHHHHHHHHHHHHHhcC------------CCEEEecCC-cccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhh
Confidence 679999999999999555 999999999 999999999999888 55555689999999999998764
No 143
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.75 E-value=2.6e-18 Score=173.51 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=60.5
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.. |++|||||| |++||+.++..+.++ ..+.+ +.||||||||++++..+
T Consensus 143 ~LS~Ge~qrv~laral~~~------------p~~lllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~ 208 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQD------------PKLLLLDEP-VAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSI 208 (242)
T ss_pred hCCHHHHHHHHHHHHHhcC------------CCEEEecCC-ccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHh
Confidence 4678999999999988555 999999999 999999999999888 44444 68999999999998764
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
...++|....
T Consensus 209 ~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 209 ADKVTVLHQGSVLA 222 (242)
T ss_pred CCEEEEEECCeEEe
Confidence 2345565543
No 144
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.2e-18 Score=171.56 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=62.4
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+.|.|||++|||++++..
T Consensus 136 ~~LS~G~~qrl~la~al~~~------------p~illlDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (237)
T PRK11614 136 GTMSGGEQQMLAIGRALMSQ------------PRLLLLDEP-SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALK 202 (237)
T ss_pred hhCCHHHHHHHHHHHHHHhC------------CCEEEEcCc-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHh
Confidence 34679999999999999666 999999999 999999999998887 5555568999999999998876
Q ss_pred hh----hhccCCCcc
Q psy3589 570 VK----RKHKGEETE 580 (604)
Q Consensus 570 ~~----~~~~~~~~~ 580 (604)
+. ...+|....
T Consensus 203 ~~d~i~~l~~G~i~~ 217 (237)
T PRK11614 203 LADRGYVLENGHVVL 217 (237)
T ss_pred hCCEEEEEeCCEEEe
Confidence 52 335565543
No 145
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.2e-18 Score=165.35 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=56.7
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.. |+++||||| |++||..++..+.++ ..+.+.|.|||++|||..++..+
T Consensus 96 LS~G~~qrv~laral~~~------------p~illlDEP-t~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 96 LSGGMKQRLALAQALLHD------------PELLILDEP-TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred cCHHHHHHHHHHHHHHcC------------CCEEEEeCC-ccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 469999999999999555 999999999 999999999999888 55544588999999999988755
No 146
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.8e-18 Score=185.38 Aligned_cols=164 Identities=18% Similarity=0.153 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCC-eEEecCCCccCCCCCChhhhHhhccccccccc-
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR- 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~- 445 (604)
.++|+|+|||||||||++|+|+..++.|.+...+..+.... .... .++.+.+.+ ||.. +....+..+... ....
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~l-fp~l-tv~eNi~~~l~~-~~~~~ 123 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYAL-FPHM-TVEQNIAFGLKQ-DKLPK 123 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCcc-CCCC-CHHHHHHHHHHH-cCCCH
Confidence 68999999999999999999999999888765544332110 0111 233344433 2221 111111111000 0000
Q ss_pred -CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 -EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 -~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
+....+..+++.+++..+ . .+....+|||+.++.++||+++.+ |+
T Consensus 124 ~~~~~~v~~~l~~l~L~~~--------------------~--~~~~~~LSgGq~QRVaLARAL~~~------------P~ 169 (377)
T PRK11607 124 AEIASRVNEMLGLVHMQEF--------------------A--KRKPHQLSGGQRQRVALARSLAKR------------PK 169 (377)
T ss_pred HHHHHHHHHHHHHcCCchh--------------------h--cCChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 001112222222222111 0 112224679999999999999665 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| +++||...+..+... .. +++.|.|+|+||||.+++..+
T Consensus 170 lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l 216 (377)
T PRK11607 170 LLLLDEP-MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM 216 (377)
T ss_pred EEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 9999999 999999998888765 33 345689999999999998776
No 147
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.75 E-value=2.3e-18 Score=176.64 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=56.7
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..
T Consensus 149 ~LS~G~~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~ 215 (267)
T PRK15112 149 MLAPGQKQRLGLARALILR------------PKVIIADEA-LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKH 215 (267)
T ss_pred hcCHHHHHHHHHHHHHHhC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence 3578999999999999665 999999999 999999999999887 44443 48999999999999887
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 216 ~ 216 (267)
T PRK15112 216 I 216 (267)
T ss_pred h
Confidence 5
No 148
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.4e-18 Score=175.37 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=57.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+...+.|||+||||++++.++
T Consensus 138 ~LS~G~~qrv~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~ 204 (255)
T PRK11231 138 DLSGGQRQRAFLAMVLAQD------------TPVVLLDEP-TTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY 204 (255)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence 4679999999999999666 999999999 999999999999888 45555689999999999998765
No 149
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.7e-18 Score=177.77 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+..+.... .... .++.+.|...++... ....+..+... ..
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~-v~~~~~~~~~~-~~ 113 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI-VKYDVAFGLEN-HA 113 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc-HHHHHHhhHHh-cC
Confidence 369999999999999999999999998887755443321110 0111 223333321121111 00111111000 00
Q ss_pred cc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 LR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.. .....+..++..+++.. .. ......+|||+.++..+|++++.+
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~qrl~laral~~~----------- 160 (269)
T PRK13648 114 VPYDEMHRRVSEALKQVDMLE--------------------RA--DYEPNALSGGQKQRVAIAGVLALN----------- 160 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCch--------------------hh--hCCcccCCHHHHHHHHHHHHHHcC-----------
Confidence 00 00011112222222110 00 112234678999999999999655
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
|+++||||| |++||+.++..+.++ ..+.+ .|.|||+|||+++++..+.+. .+|...
T Consensus 161 -p~lllLDEP-t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~ 221 (269)
T PRK13648 161 -PSVIILDEA-TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVY 221 (269)
T ss_pred -CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEE
Confidence 999999999 999999999999887 44443 489999999999998754433 445443
No 150
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.75 E-value=4e-18 Score=173.76 Aligned_cols=176 Identities=18% Similarity=0.143 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cC-CeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+..+..... .. ..++.+.+.+.+... ....+..+......
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t--v~e~l~~~~~~~~~ 105 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT--VRDVVALGRIPHRS 105 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC--HHHHHHhcchhhhh
Confidence 4699999999999999999999999988876544433221110 01 122233332221111 11111111000000
Q ss_pred c---c--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 444 L---R--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 444 l---~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
. . .....+..++..+++... .......+|||+.++..+|++++.+
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LS~G~~qrl~la~al~~~-------- 155 (256)
T TIGR03873 106 LWAGDSPHDAAVVDRALARTELSHL----------------------ADRDMSTLSGGERQRVHVARALAQE-------- 155 (256)
T ss_pred hccCCCHHHHHHHHHHHHHcCcHhh----------------------hcCCcccCCHHHHHHHHHHHHHhcC--------
Confidence 0 0 000111222222221110 0122234679999999999999555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|+++||||| |++||..++..+.++ ..+.+.+.|||+||||++++..+ + ...+|....
T Consensus 156 ----p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 156 ----PKLLLLDEP-TNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred ----CCEEEEcCc-cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 999999999 999999999999888 55555589999999999998664 2 334565543
No 151
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.4e-18 Score=178.26 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=62.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGK 568 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~ 568 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.. .|.|||+||||++++.
T Consensus 144 ~~LSgGq~qrv~laraL~~~------------p~illlDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMN------------PDIIVLDEP-TAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVA 210 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhC------------CCEEEEECC-cccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 34679999999999999666 999999999 999999999999888 45543 5899999999999986
Q ss_pred hh-h---hhccCCCcc
Q psy3589 569 NV-K---RKHKGEETE 580 (604)
Q Consensus 569 ~~-~---~~~~~~~~~ 580 (604)
++ . .-.+|....
T Consensus 211 ~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 211 RYADEVIVMKEGSIVS 226 (286)
T ss_pred HhCCEEEEEECCEEEE
Confidence 65 2 334555543
No 152
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.9e-18 Score=162.62 Aligned_cols=183 Identities=20% Similarity=0.179 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec----CCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT----DNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~----~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++||||||+||||||++|+|...++.|.+...+......... ....+.+...+.||..+. .-+..|..|...
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~--eVV~mGr~p~~~ 105 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ--EVVQMGRIPHRS 105 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHH--HHHHhccccccc
Confidence 35899999999999999999999999888765444433221110 011222222223332211 112223222211
Q ss_pred ccCch---HHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 444 LREPY---STVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 444 l~~~~---~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
-.++. ..+...+.++.+ ..+ ..|.|.++|||+.+++.+||.+.+-|-. .
T Consensus 106 g~~~~e~~~i~~~ala~~d~---------------------~~l-a~R~y~~LSGGEqQRVqlARvLaQl~~~------v 157 (259)
T COG4559 106 GREPEEDERIAAQALAATDL---------------------SGL-AGRDYRTLSGGEQQRVQLARVLAQLWPP------V 157 (259)
T ss_pred CCCchhhHHHHHHHHHHcCh---------------------hhh-hccchhhcCchHHHHHHHHHHHHHccCC------C
Confidence 11100 011111111111 011 1356777899999999999999665322 2
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCccc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETEE 581 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~ 581 (604)
..+.+|+|||| |+.||+..+..+.++ +.+...|..|+.|-||++.+..+ ..-|+|...+.
T Consensus 158 ~~~r~L~LDEP-tsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 158 PSGRWLFLDEP-TSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred CCCceEEecCC-ccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence 33469999999 999999998888887 77888899999999999998766 34466665553
No 153
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.3e-18 Score=178.66 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=60.7
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ .+.||||||||++++..
T Consensus 150 ~LS~Gq~qrv~laral~~~------------p~lLlLDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~ 216 (289)
T PRK13645 150 ELSGGQKRRVALAGIIAMD------------GNTLVLDEP-TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLR 216 (289)
T ss_pred hCCHHHHHHHHHHHHHHhC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 4679999999999999666 999999999 999999999998887 44433 48999999999998866
Q ss_pred h----hhhccCCCc
Q psy3589 570 V----KRKHKGEET 579 (604)
Q Consensus 570 ~----~~~~~~~~~ 579 (604)
+ ....+|...
T Consensus 217 ~~d~i~~l~~G~i~ 230 (289)
T PRK13645 217 IADEVIVMHEGKVI 230 (289)
T ss_pred hCCEEEEEECCEEE
Confidence 5 233555544
No 154
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.8e-18 Score=179.65 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-------EecCC-eEEecCCC-ccCCCCCChhhhHhhcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-------FLTDN-IRLCDCPG-LVFPSKVPKPLQVLMGS 438 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-------~~~~~-~~l~D~pG-l~~p~~~~~~~~~l~g~ 438 (604)
-.++|+|+||||||||+++|+|+..++.|.+...+..+... ..... .++.+.|. ..++.. ....+..+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~t--v~eni~~~~ 111 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEET--VEKDICFGP 111 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhh--HHHHHHHHH
Confidence 36999999999999999999999999888775544433110 00011 22333331 111111 111111110
Q ss_pred cccc-cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 439 FPIA-QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 439 ~~i~-~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
.... ........+..++..+++.. .+ ..+....+|||+.++..+|++++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~--------------------~~-~~~~~~~LSgGq~qrv~lAraL~~~------- 163 (290)
T PRK13634 112 MNFGVSEEDAKQKAREMIELVGLPE--------------------EL-LARSPFELSGGQMRRVAIAGVLAME------- 163 (290)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCCh--------------------hh-hhCCcccCCHHHHHHHHHHHHHHcC-------
Confidence 0000 00000011222222222210 00 0122234679999999999999665
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.. .|.||||||||+.++..+ ....+|....
T Consensus 164 -----P~llllDEP-t~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 164 -----PEVLVLDEP-TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred -----CCEEEEECC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999998887 45543 589999999999998764 3445565543
No 155
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.74 E-value=2.9e-18 Score=183.41 Aligned_cols=175 Identities=17% Similarity=0.048 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccc----eeEEEE--------ecCCeEEecCCCccCCCCCChhhhHh
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK----HFQTIF--------LTDNIRLCDCPGLVFPSKVPKPLQVL 435 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~----~~q~~~--------~~~~~~l~D~pGl~~p~~~~~~~~~l 435 (604)
-.++|+|+|||||||||++|+|+..++.|.+...+. .+.... .....++.+.+++........ .+.
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e--Ni~ 128 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE--NVA 128 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH--HHH
Confidence 368999999999999999999999999888755442 111100 011223344444332111111 111
Q ss_pred hccccccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhcc
Q psy3589 436 MGSFPIAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATE 513 (604)
Q Consensus 436 ~g~~~i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSg 513 (604)
.+. ....+. .....+..+++.+++.... ......+|||+.++..+||+|+.+
T Consensus 129 ~~~-~~~g~~~~~~~~~a~e~le~vgL~~~~----------------------~~~~~~LSgGq~QRV~LARALa~~--- 182 (382)
T TIGR03415 129 FGL-EMQGMPEAERRKRVDEQLELVGLAQWA----------------------DKKPGELSGGMQQRVGLARAFAMD--- 182 (382)
T ss_pred HHH-HhcCCCHHHHHHHHHHHHHHcCCchhh----------------------cCChhhCCHHHHHHHHHHHHHhcC---
Confidence 110 000000 0011222233333221110 111223679999999999999655
Q ss_pred ceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 514 GRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 514 G~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+..+..+.+. ..+.+ .+.||||||||++++.++ ....+|....
T Consensus 183 ---------P~ILLlDEP-ts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 183 ---------ADILLMDEP-FSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred ---------CCEEEEECC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999887 45544 489999999999998765 2334555443
No 156
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.74 E-value=2.8e-18 Score=173.97 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=60.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 144 ~LSgG~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~ 209 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVE------------PEVLLLDEP-TSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARI 209 (247)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHh
Confidence 4679999999999999555 999999999 999999999998888 44444 48999999999988765
Q ss_pred h----hhccCCCcc
Q psy3589 571 K----RKHKGEETE 580 (604)
Q Consensus 571 ~----~~~~~~~~~ 580 (604)
. ..++|....
T Consensus 210 ~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 210 SDRTAFFYDGELVE 223 (247)
T ss_pred CCEEEEEECCEEEE
Confidence 2 335555443
No 157
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.5e-18 Score=172.69 Aligned_cols=173 Identities=18% Similarity=0.146 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+. +. .....+..+.. ...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~-~~--tv~e~l~~~~~-~~~ 105 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLF-EG--TVKDNIEYGPM-LKG 105 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhc-hh--hHHHHHhcchh-hcC
Confidence 369999999999999999999999998887755443322110 0111 1223333221 11 11111110000 000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++. ..+ ..+....+|||+.++..+|++++.+ |
T Consensus 106 --~~~~~~~~~l~~~~l~--------------------~~~-~~~~~~~LS~G~~qrl~la~al~~~------------p 150 (241)
T PRK14250 106 --EKNVDVEYYLSIVGLN--------------------KEY-ATRDVKNLSGGEAQRVSIARTLANN------------P 150 (241)
T ss_pred --cHHHHHHHHHHHcCCC--------------------HHH-hhCCcccCCHHHHHHHHHHHHHhcC------------C
Confidence 0011122222222221 000 1122334679999999999999555 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
+++||||| |++||..++..+.++ ..+.+ .|.|||+||||++++..+ ....+|....
T Consensus 151 ~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 151 EVLLLDEP-TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999 999999999998887 44444 489999999999998764 2334555443
No 158
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.1e-18 Score=176.71 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecC-CeEEecCCC-ccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTD-NIRLCDCPG-LVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~-~~~l~D~pG-l~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+||+|+||+|||||+++|+|+..++.|.+...+..+.... ... ..++.+.+. ..+.... ...+..+... .
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv--~~~l~~~~~~-~ 107 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV--EQDIAFGPIN-L 107 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH--HHHHHhHHHH-c
Confidence 469999999999999999999999998887654333221100 001 112222221 1111111 1111000000 0
Q ss_pred cccC--chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLRE--PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~~--~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
.... ....+..++..+++... . .+....+|||+.++..+|++++.+
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~Gq~qrl~laraL~~~---------- 155 (277)
T PRK13652 108 GLDEETVAHRVSSALHMLGLEEL--------------------R--DRVPHHLSGGEKKRVAIAGVIAME---------- 155 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCChhH--------------------h--cCCcccCCHHHHHHHHHHHHHHcC----------
Confidence 0000 00111222222222110 1 112234679999999999999665
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.+ .|.|||++|||++++.++ ...++|....
T Consensus 156 --p~llilDEP-t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 156 --PQVLVLDEP-TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred --CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999 999999999998887 44544 489999999999998655 3346666554
No 159
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.74 E-value=3.4e-18 Score=170.90 Aligned_cols=66 Identities=20% Similarity=0.020 Sum_probs=56.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+.+.|||+||||.+++..+
T Consensus 142 ~LSgG~~qrv~laral~~~------------p~llllDEP-~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~ 208 (224)
T cd03220 142 TYSSGMKARLAFAIATALE------------PDILLIDEV-LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRL 208 (224)
T ss_pred hCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 4678999999999998555 999999999 999999998888877 44444588999999999998765
No 160
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=3.2e-18 Score=164.58 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||||||||+++|+|+..++.|.+...+.. + ++.++..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---------i------~~~~q~~-------------------- 70 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---------P------VYKPQYI-------------------- 70 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---------E------EEEcccC--------------------
Confidence 3699999999999999999999999887765322211 0 0000000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
. +|||+.++..+|++++.+ |++++
T Consensus 71 ------------------------------~--------------LSgGq~qrv~laral~~~------------p~lll 94 (177)
T cd03222 71 ------------------------------D--------------LSGGELQRVAIAAALLRN------------ATFYL 94 (177)
T ss_pred ------------------------------C--------------CCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 0 358999999999999655 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+..+..+.++ ..+... +.|||+||||+.++..+
T Consensus 95 LDEP-ts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 95 FDEP-SAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred EECC-cccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 9999 999999999888877 444444 48999999999998865
No 161
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=2.6e-18 Score=168.72 Aligned_cols=162 Identities=10% Similarity=-0.010 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCCe-EEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+||+|||||+++|+|+.++..|.+...+..+... .....+ ++.+.+.+.+....... +..+... .
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~--~~~~~~~-~-- 102 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN--CLYDIHF-S-- 102 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH--HHHHHhc-C--
Confidence 46999999999999999999999999888765444332110 001112 22222222111111111 1111000 0
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
. ....+..++..+++.. .. .+....+|||+.++..+|++++.+ |+
T Consensus 103 ~-~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LS~G~~~rv~laral~~~------------p~ 147 (200)
T PRK13540 103 P-GAVGITELCRLFSLEH--------------------LI--DYPCGLLSSGQKRQVALLRLWMSK------------AK 147 (200)
T ss_pred c-chHHHHHHHHHcCCch--------------------hh--hCChhhcCHHHHHHHHHHHHHhcC------------CC
Confidence 0 0011222222221110 01 112223579999999999999665 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++||||| |++||..++..+.++ ..+.+.+.|||+|||+...+..+
T Consensus 148 ~lilDEP-~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 148 LWLLDEP-LVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred EEEEeCC-CcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 9999999 999999999999888 44545689999999999887553
No 162
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.3e-18 Score=175.31 Aligned_cols=176 Identities=15% Similarity=0.051 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+++.+... ....+..+......
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t--v~e~l~~~~~~~~~ 115 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT--VRELVAIGRYPWHG 115 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc--HHHHHHhCcccccc
Confidence 469999999999999999999999988887755443321110 0111 22233333322111 11111111100000
Q ss_pred ---ccC--chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 444 ---LRE--PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 444 ---l~~--~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
... ....+..++..+++...+ . +..-.+|||+.++..+|++++.+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------~--~~~~~LSgG~~qrv~laral~~~-------- 165 (265)
T PRK10575 116 ALGRFGAADREKVEEAISLVGLKPLA--------------------H--RLVDSLSGGERQRAWIAMLVAQD-------- 165 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHh--------------------c--CCcccCCHHHHHHHHHHHHHhcC--------
Confidence 000 011122233332221110 1 11123579999999999999555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.. .+.|||+||||++++..+ ....+|....
T Consensus 166 ----p~lllLDEP-t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 166 ----SRCLLLDEP-TSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred ----CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999 999999999888887 44443 489999999999998764 2335666543
No 163
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=3.6e-18 Score=165.21 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=56.7
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+...+.|||++|||+.++..+
T Consensus 105 LS~G~~qrl~la~al~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 170 (182)
T cd03215 105 LSGGNQQKVVLARWLARD------------PRVLILDEP-TRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGL 170 (182)
T ss_pred cCHHHHHHHHHHHHHccC------------CCEEEECCC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 469999999999999555 999999999 999999999999888 44544589999999999988775
No 164
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.74 E-value=8e-18 Score=171.15 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||||||||+++|+|+.++..|.+...... ...++.+.+.+ ++.........+ ...+ .. .
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~-------~i~~v~q~~~~-~~~l~~~~~~~~-~~~~--~~--~ 97 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL-------RIGYVPQKLYL-DTTLPLTVNRFL-RLRP--GT--K 97 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc-------CEEEecccccc-ccccChhHHHHH-hccc--cc--c
Confidence 4699999999999999999999999888866432210 11122222222 111100000000 0000 00 0
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.... ......+|||+.++..+|++++.. |+++|
T Consensus 98 ~~~~~~~l~~~gl~~~~----------------------~~~~~~LSgGq~qrv~laral~~~------------p~lll 143 (251)
T PRK09544 98 KEDILPALKRVQAGHLI----------------------DAPMQKLSGGETQRVLLARALLNR------------PQLLV 143 (251)
T ss_pred HHHHHHHHHHcCChHHH----------------------hCChhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 11223333333321111 112234679999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+
T Consensus 144 LDEP-t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 144 LDEP-TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred EeCC-CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 9999 999999999998887 44443 389999999999998765
No 165
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.9e-18 Score=178.84 Aligned_cols=175 Identities=17% Similarity=0.097 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EE---ecC-CeEEecCCCc-cCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IF---LTD-NIRLCDCPGL-VFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~---~~~-~~~l~D~pGl-~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||+|||||+++|+|+.++..|.+...+..+.. .. ... ..++.+.+.. .++.. ....+..+...
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t--v~e~l~~~~~~ 110 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS--VYQDVSFGAVN 110 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc--HHHHHHhHHHH
Confidence 3699999999999999999999999988877655443310 00 011 1233333321 11111 11111111000
Q ss_pred ccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 441 IAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 441 i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
. ... .....+..++..+++... ..+....+|||+.++..+|++++.+
T Consensus 111 ~-~~~~~~~~~~~~~~l~~~gL~~~----------------------~~~~~~~LS~G~~qrl~laraL~~~-------- 159 (283)
T PRK13636 111 L-KLPEDEVRKRVDNALKRTGIEHL----------------------KDKPTHCLSFGQKKRVAIAGVLVME-------- 159 (283)
T ss_pred c-CCCHHHHHHHHHHHHHHCCChhh----------------------hhCCcccCCHHHHHHHHHHHHHHcC--------
Confidence 0 000 001112222233222110 1122334679999999999999665
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+ . ..+.|....
T Consensus 160 ----p~lLilDEP-t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 160 ----PKVLVLDEP-TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred ----CCEEEEeCC-ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999988887 44443 489999999999998754 3 335666544
No 166
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.7e-18 Score=175.96 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-----ecCC-eEEecCCC-ccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-----LTDN-IRLCDCPG-LVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-----~~~~-~~l~D~pG-l~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+. ..++.. ....+..+...
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t--v~e~i~~~~~~ 106 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT--VEEDVAFGPLN 106 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc--HHHHHHHHHHH
Confidence 369999999999999999999999998887755444331000 0111 12233321 112111 11111111000
Q ss_pred ccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 441 IAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 441 i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
. ... .....+..++..+++.. +. .+....+|||+.++..+|++++.+
T Consensus 107 ~-~~~~~~~~~~~~~~l~~~~L~~---------------------~~-~~~~~~LS~Gq~qrv~laral~~~-------- 155 (275)
T PRK13639 107 L-GLSKEEVEKRVKEALKAVGMEG---------------------FE-NKPPHHLSGGQKKRVAIAGILAMK-------- 155 (275)
T ss_pred c-CCCHHHHHHHHHHHHHHCCCch---------------------hh-cCChhhCCHHHHHHHHHHHHHhcC--------
Confidence 0 000 00011122222222110 11 112234678999999999988555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|+++||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ . .-.+|....
T Consensus 156 ----p~llllDEP-t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 156 ----PEIIVLDEP-TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred ----CCEEEEeCC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 55554589999999999998764 3 234565544
No 167
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4.3e-18 Score=174.52 Aligned_cols=176 Identities=15% Similarity=0.068 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecC-CeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+|||||||||++|+|+.++..|.+...+..+.... ... ..++.+.+.+.+... ....+..+..+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t--v~~~~~~~~~~~~~ 111 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT--VQELVARGRYPHQP 111 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc--HHHHHHhCcccccc
Confidence 369999999999999999999999988887654433321110 001 122233332221111 11111111111000
Q ss_pred c----cC-chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 444 L----RE-PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 444 l----~~-~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
. .. ....+..++..+++... ..+....+|||+.++..+|++++..
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LS~Gq~qrv~laral~~~-------- 161 (265)
T PRK10253 112 LFTRWRKEDEEAVTKAMQATGITHL----------------------ADQSVDTLSGGQRQRAWIAMVLAQE-------- 161 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHH----------------------hcCCcccCChHHHHHHHHHHHHhcC--------
Confidence 0 00 00112222232222110 1122334679999999999999555
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|+++||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++..+ ....+|....
T Consensus 162 ----p~llllDEP-t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 162 ----TAIMLLDEP-TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred ----CCEEEEeCc-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999998887 44444 488999999999988765 2345565543
No 168
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.74 E-value=4.8e-18 Score=169.63 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=56.7
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.+...+.++ ..++..|.|||+||||.+++..+
T Consensus 149 ~LS~G~~qrl~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~ 215 (224)
T TIGR02324 149 TFSGGEQQRVNIARGFIAD------------YPILLLDEP-TASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV 215 (224)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 4678999999999998555 999999999 999999999999888 55555689999999999988754
No 169
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.6e-18 Score=181.52 Aligned_cols=76 Identities=16% Similarity=0.066 Sum_probs=62.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++|+.+ |++|||||| |++||+.++..+.++ ..+.+ .|.||||||||+.++..
T Consensus 158 ~LSgG~~QRv~iArAL~~~------------P~llilDEP-ts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~ 224 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQ------------PRLLIADEP-TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQ 224 (330)
T ss_pred hCCHHHHHHHHHHHHHHCC------------CCEEEEeCC-CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 4679999999999999555 999999999 999999999998888 55554 58999999999999976
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ..-++|...+
T Consensus 225 ~~dri~vm~~G~ive 239 (330)
T PRK15093 225 WADKINVLYCGQTVE 239 (330)
T ss_pred hCCEEEEEECCEEEE
Confidence 5 2345565544
No 170
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.74 E-value=2.8e-18 Score=164.63 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=56.2
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+.|.|||+||||..++..+
T Consensus 97 LS~G~~qrv~la~al~~~------------p~~lllDEP-t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 162 (173)
T cd03246 97 LSGGQRQRLGLARALYGN------------PRILVLDEP-NSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASA 162 (173)
T ss_pred cCHHHHHHHHHHHHHhcC------------CCEEEEECC-ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 469999999999999555 999999999 999999999999888 55555688999999999987543
No 171
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.74 E-value=1.1e-18 Score=168.40 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+.++.. ..........+..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~-------------------~~~~~~~~~i~~~-------- 78 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-------------------LSPKELARKIAYV-------- 78 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-------------------CCHHHHHHHHhHH--------
Confidence 4699999999999999999999998877754322211100 0000000000000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
..++..+++.... ......+|||+.++..+|++++.+ |+++|
T Consensus 79 ----~q~l~~~gl~~~~----------------------~~~~~~LS~G~~qrl~laral~~~------------p~lll 120 (180)
T cd03214 79 ----PQALELLGLAHLA----------------------DRPFNELSGGERQRVLLARALAQE------------PPILL 120 (180)
T ss_pred ----HHHHHHcCCHhHh----------------------cCCcccCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 0023333221111 112223679999999999999655 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||..++..+.++ ..+.+. +.|||+|||+++++..+
T Consensus 121 lDEP-~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 121 LDEP-TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred EeCC-ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 9999 999999999999888 444444 78999999999998665
No 172
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=2.1e-18 Score=168.20 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+|++|+|||||||++++|+|++.++.|.+...+..+.........++...-|++....+.
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~------------------ 90 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVE------------------ 90 (300)
T ss_pred eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHH------------------
Confidence 45899999999999999999999999999876555443322112223333333433221111
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccce------eeeecC
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGR------ICLCLM 521 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~------l~al~~ 521 (604)
..+.|++..-++.. ..+..-+..|..+... ...-...+.+||.|+ |+++++
T Consensus 91 -dql~yla~LkGm~~------------~e~~~~~~~wLer~~i----------~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 91 -DQLKYLAELKGMPK------------AEIQKKLQAWLERLEI----------VGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred -HHHHHHHHhcCCcH------------HHHHHHHHHHHHhccc----------cccccchHHHhhhhhhHHHHHHHHHhc
Confidence 12222222111100 0011111222221110 001112234445554 446677
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.|+++||||| ++|||+.....|.+. ..+++.|.|||++||.|+.|.++
T Consensus 148 ePeLlILDEP-FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeL 196 (300)
T COG4152 148 EPELLILDEP-FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL 196 (300)
T ss_pred CCCEEEecCC-ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHH
Confidence 8999999999 999999999999988 78899999999999999999887
No 173
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2.6e-18 Score=177.31 Aligned_cols=175 Identities=16% Similarity=0.106 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecC-CeEEecCCC-ccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTD-NIRLCDCPG-LVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~-~~~l~D~pG-l~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+..+.... ... ..++.+.|. +++.... ...+..+... .
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv--~eni~~~~~~-~ 110 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV--EDDVAFGMEN-Q 110 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH--HHHHHhhHHH-c
Confidence 369999999999999999999999998887755443322100 011 122333332 1211111 1111111000 0
Q ss_pred ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... .....+..++..+++.. +. ......+|||+.++..+|++++.+
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~---------------------~~-~~~~~~LS~G~~qrv~lAraL~~~---------- 158 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLD---------------------FK-TREPARLSGGQKQRVAVAGIIALR---------- 158 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHh---------------------Hh-hCCcccCCHHHHHHHHHHHHHHcC----------
Confidence 000 00011122222222211 11 112234679999999999999665
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
|+++||||| |++||+.++..|.++ ..+.+ .|.|||+||||+.++..+.++ ++|....
T Consensus 159 --p~llllDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 159 --PEIIILDES-TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIK 220 (277)
T ss_pred --CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 44544 489999999999998654433 5565543
No 174
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.4e-18 Score=176.63 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCC-eEEecCCCc-cCCCCCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDN-IRLCDCPGL-VFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~-~~l~D~pGl-~~p~~~~~~~~~l~g~~~i 441 (604)
-.++|+|+||+|||||+++|+|+..+..|.+...+..+.... .... .++.+.|.. .+... ....+..+...
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~--v~~~l~~~~~~- 113 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI--VEEDVAFGPEN- 113 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc--HHHHHHhhHhh-
Confidence 359999999999999999999999998888755444332110 0111 223333321 11111 11111000000
Q ss_pred cccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 442 AQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 442 ~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
..+. .....+..++..+++... + .+....+|||+.++..+|++++..
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~--------------------~--~~~~~~LS~G~~qrv~laral~~~--------- 162 (280)
T PRK13633 114 LGIPPEEIRERVDESLKKVGMYEY--------------------R--RHAPHLLSGGQKQRVAIAGILAMR--------- 162 (280)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHhH--------------------h--hCCcccCCHHHHHHHHHHHHHHcC---------
Confidence 0000 001112223333222111 1 112234679999999999999665
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhh---hhccCCCcc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVK---RKHKGEETE 580 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~---~~~~~~~~~ 580 (604)
|+++||||| |++||+.++..|.++ ..+.+ .|.|||+||||++++..+. ..+.|....
T Consensus 163 ---p~llllDEP-t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~ 224 (280)
T PRK13633 163 ---PECIIFDEP-TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVM 224 (280)
T ss_pred ---CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEE
Confidence 999999999 999999999999888 44543 5899999999999986543 335555443
No 175
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.74 E-value=3.5e-18 Score=170.22 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.++|+|+||+|||||+++|+|..++..|.+...+..+.... .... .++.+.+.+..................
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 469999999999999999999999998887754443321110 0011 223333332211111111110000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
..........+..++..+++.... .......|+|+.++..+|++++.+
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~lS~G~~qrv~laral~~~---------- 159 (220)
T TIGR02982 112 NLSYQEARERARAMLEAVGLGDHL----------------------DYYPHNLSGGQKQRVAIARALVHR---------- 159 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhh----------------------hcChhhCCHHHHHHHHHHHHHhcC----------
Confidence 000000011122222222221110 112224568888999999988555
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEG 567 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~ 567 (604)
|+++||||| |++||..++..+.++ ..+.+ .+.|||+||||++.+
T Consensus 160 --p~illlDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 160 --PKLVLADEP-TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred --CCEEEEeCC-CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999 999999999888887 44443 589999999999854
No 176
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.74 E-value=3.7e-18 Score=185.90 Aligned_cols=179 Identities=18% Similarity=0.089 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE-------EEecCCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT-------IFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~-------~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-++||||.+|||||||.++|+|+..|+.|.+...+..+.. ....-.+.+.|......|.. ... ..+..-+.
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~-tV~-~~i~epL~ 395 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM-TVG-DILAEPLR 395 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc-cHH-HHHHhHHh
Confidence 4799999999999999999999999988887655543110 00011122333222222221 111 11111110
Q ss_pred ccc---ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 441 IAQ---LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 441 i~~---l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
+.. .......+..+++.+++..- .+.++..- .||||.|+.++||+|...
T Consensus 396 ~~~~~~~~~~~~rv~~ll~~VgL~~~-------------------~l~ryP~e--lSGGQrQRvaIARALa~~------- 447 (539)
T COG1123 396 IHGGGSGAERRARVAELLELVGLPPE-------------------FLDRYPHE--LSGGQRQRVAIARALALE------- 447 (539)
T ss_pred hhcccchHHHHHHHHHHHHHcCCCHH-------------------HHhcCchh--cCcchhHHHHHHHHHhcC-------
Confidence 000 01111234445555444321 11122222 569999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhhh----hhccCCCcccC
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNVK----RKHKGEETEED 582 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~~ 582 (604)
|+++++||| |+.||+..+..+.++ ..+ .+.|.|+||||||+..+..+. .-++|.++++.
T Consensus 448 -----P~lli~DEp-~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 448 -----PKLLILDEP-VSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred -----CCEEEecCC-ccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999 999999998888887 444 456999999999999998873 56778887754
No 177
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.2e-18 Score=176.02 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... +... .++.+.|...++.. .....+..+... ..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~enl~~~~~~-~~ 113 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA-TVEDDIAFGLEN-KK 113 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc-cHHHHHHhHHHH-cC
Confidence 369999999999999999999999998887754443322110 0111 22233332111111 111111100000 00
Q ss_pred cc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 LR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.. .....+..++..+++... . ......+|||+.++..+|++++.+
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qrl~laral~~~----------- 160 (271)
T PRK13632 114 VPPKKMKDIIDDLAKKVGMEDY--------------------L--DKEPQNLSGGQKQRVAIASVLALN----------- 160 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHHH--------------------h--hCCcccCCHHHHHHHHHHHHHHcC-----------
Confidence 00 000112222222222111 1 112234679999999999999655
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
|++|||||| |++||+.++..+.++ ..+... +.||||||||++++..+. ...+|...
T Consensus 161 -p~lllLDEP-~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 221 (271)
T PRK13632 161 -PEIIIFDES-TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221 (271)
T ss_pred -CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEE
Confidence 999999999 999999999988888 444444 589999999999886433 23455543
No 178
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.74 E-value=2.4e-18 Score=181.40 Aligned_cols=163 Identities=14% Similarity=0.075 Sum_probs=97.4
Q ss_pred EEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCC-eEEecCCCccCCCCCChhhhHhhcccccccccCchH
Q psy3589 372 CVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPYS 449 (604)
Q Consensus 372 LVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~~~ 449 (604)
|+|+|||||||||++|+|+.+++.|.+...+..+.... .... .++.+.+.++........+........... .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~-~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR-AEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCH-HHHHH
Confidence 58999999999999999999998888765444331110 0111 233344433211111111111000000000 00001
Q ss_pred HHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccccc
Q psy3589 450 TVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQ 529 (604)
Q Consensus 450 ~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLD 529 (604)
.+..++..+++...+ .+....+|||+.++..+|++++.+ |+++|||
T Consensus 80 ~~~~~l~~~~l~~~~----------------------~~~~~~LSgGq~qRvalaraL~~~------------p~lllLD 125 (325)
T TIGR01187 80 RVLEALRLVQLEEFA----------------------DRKPHQLSGGQQQRVALARALVFK------------PKILLLD 125 (325)
T ss_pred HHHHHHHHcCCcchh----------------------cCChhhCCHHHHHHHHHHHHHHhC------------CCEEEEe
Confidence 122222222221100 112234679999999999999666 9999999
Q ss_pred CCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 530 EYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 530 EP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|| |++||+..+..+.++ ..+. +.|.|||+||||++++..+
T Consensus 126 EP-~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~ 167 (325)
T TIGR01187 126 EP-LSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167 (325)
T ss_pred CC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 99 999999999998887 4443 3589999999999998765
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.74 E-value=6.1e-18 Score=172.63 Aligned_cols=67 Identities=16% Similarity=0.093 Sum_probs=57.0
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGK 568 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~ 568 (604)
..+|||+.++..+|++++.+ |++|||||| |++||+.+...+.++ ..+.. .|.|||+||||++++.
T Consensus 150 ~~LS~Gq~qrl~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTH------------PRLVFMDEP-TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 34679999999999999555 999999999 999999999998887 44433 4899999999999997
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 217 ~~ 218 (258)
T PRK11701 217 LL 218 (258)
T ss_pred Hh
Confidence 64
No 180
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.74 E-value=2.8e-18 Score=191.31 Aligned_cols=176 Identities=14% Similarity=0.066 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCC-eEEecCCCccCCCCCChhhhHhhccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPI- 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i- 441 (604)
-.+||+|+|||||||||++|+|+.+++.|.+...+..+.... .... .++.+.+.+. +.. .....+..+....
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~-~~~-tv~e~l~~~~~~~~ 108 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLI-PQL-TIAENIFLGREFVN 108 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhcc-CCC-cHHHHhhhcccccc
Confidence 469999999999999999999999998887754433221100 0111 2333333322 111 1111111110000
Q ss_pred --ccc--cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 442 --AQL--REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 442 --~~l--~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
... ......+..++..+++... . .+..-++|||+.++..+|++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LSgG~~qrv~la~al~~~------- 159 (501)
T PRK10762 109 RFGRIDWKKMYAEADKLLARLNLRFS--------------------S--DKLVGELSIGEQQMVEIAKVLSFE------- 159 (501)
T ss_pred ccCccCHHHHHHHHHHHHHHcCCCCC--------------------c--cCchhhCCHHHHHHHHHHHHHhcC-------
Confidence 000 0000112222222222100 0 111224679999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+..+..+.++ ..+.+.|.|||+||||++++..+ ...++|....
T Consensus 160 -----p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 160 -----SKVIIMDEP-TDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred -----CCEEEEeCC-cCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999 999999999999887 55555689999999999998765 2344555443
No 181
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.73 E-value=5.6e-18 Score=169.45 Aligned_cols=165 Identities=15% Similarity=0.063 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecC-CeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... ... ..++.+.+.+ ++. .....+..... ...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l-~~~--tv~enl~~~~~-~~~ 109 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTL-FGD--TVYDNLIFPWQ-IRN 109 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccc-ccc--cHHHHHHhHHh-hcC
Confidence 369999999999999999999999998887754443321110 001 1222333322 121 11111100000 000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.......+..++..+++. +.. .......+|||+.++..+|++++.+ |
T Consensus 110 ~~~~~~~~~~~l~~~~l~--------------------~~~-~~~~~~~LS~G~~qrv~laral~~~------------p 156 (225)
T PRK10247 110 QQPDPAIFLDDLERFALP--------------------DTI-LTKNIAELSGGEKQRISLIRNLQFM------------P 156 (225)
T ss_pred CChHHHHHHHHHHHcCCC--------------------hHH-hcCCcccCCHHHHHHHHHHHHHhcC------------C
Confidence 000011112222222211 000 0122234678999999999999655 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+++||||| |++||+.++..+.++ ..+. +.+.|||+||||++++..+
T Consensus 157 ~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~ 204 (225)
T PRK10247 157 KVLLLDEI-TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHA 204 (225)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhC
Confidence 99999999 999999999999887 4443 3588999999999998644
No 182
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.5e-18 Score=176.72 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=61.0
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..|.++ ..+.. .|.|||+||||++++..
T Consensus 143 ~LS~G~~qrv~laral~~~------------P~llllDEP-t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~ 209 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAVE------------PKIIILDES-TSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM 209 (282)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEECC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 3578999999999999655 999999999 999999999998888 44443 48999999999999864
Q ss_pred hh---hhccCCCcc
Q psy3589 570 VK---RKHKGEETE 580 (604)
Q Consensus 570 ~~---~~~~~~~~~ 580 (604)
+. ...+|....
T Consensus 210 ~d~i~~l~~G~i~~ 223 (282)
T PRK13640 210 ADQVLVLDDGKLLA 223 (282)
T ss_pred CCEEEEEECCEEEE
Confidence 43 335565554
No 183
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.73 E-value=4.5e-18 Score=161.69 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=56.8
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.+ |+++||||| |++||..++..+.++ ..+.+.+.|||++|||++++..+
T Consensus 83 LS~G~~qrl~laral~~~------------p~illlDEP-~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 83 LSVGERQMVEIARALARN------------ARLLILDEP-TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred cCHHHHHHHHHHHHHhcC------------CCEEEEECC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 468999999999999665 999999999 999999999999888 45555589999999999988764
No 184
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=4.1e-18 Score=179.61 Aligned_cols=77 Identities=17% Similarity=0.049 Sum_probs=62.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.|+..+|++++.+ |++||+||| |++||+.++..+.++ ..+.+ .|.||||||||+.++..
T Consensus 153 ~LSgGq~QRv~iArAL~~~------------P~llilDEP-ts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~ 219 (326)
T PRK11022 153 QLSGGMSQRVMIAMAIACR------------PKLLIADEP-TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219 (326)
T ss_pred hCCHHHHHHHHHHHHHHhC------------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 4679999999999999666 999999999 999999999888887 55544 58999999999999876
Q ss_pred h----hhhccCCCccc
Q psy3589 570 V----KRKHKGEETEE 581 (604)
Q Consensus 570 ~----~~~~~~~~~~~ 581 (604)
+ ..-+.|...+.
T Consensus 220 ~adri~vm~~G~ive~ 235 (326)
T PRK11022 220 AAHKIIVMYAGQVVET 235 (326)
T ss_pred hCCEEEEEECCEEEEE
Confidence 5 23356665543
No 185
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.73 E-value=8.2e-18 Score=171.10 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=56.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+. +.+.||||||||++++..
T Consensus 148 ~LSgG~~qrv~laral~~~------------p~vlllDEP-~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTR------------PRLVFMDEP-TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARL 214 (253)
T ss_pred hcCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3578999999999999555 999999999 999999999999887 4433 358999999999999876
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 215 ~ 215 (253)
T TIGR02323 215 L 215 (253)
T ss_pred h
Confidence 4
No 186
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=8.7e-18 Score=156.77 Aligned_cols=186 Identities=17% Similarity=0.125 Sum_probs=113.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHh----hcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVL----MGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l----~g~~~i~~l 444 (604)
.|.|||.+|+||||+|+||.-+..|..|.+...+..+.... |..|-..+.. ...++.+ .-+|.--++
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~--------~~~G~l~~ad-~~q~~r~Rs~L~mVFQ~FNL 104 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKR--------DKDGQLKPAD-KRQLQRLRTRLGMVFQHFNL 104 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeee--------CCCCCeeeCC-HHHHHHHHHHhhHhhhhcch
Confidence 58899999999999999999999999988766555444332 1122221111 1111111 111111122
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHH------HHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGW------AQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~------a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
-..+..+..+.+. ++.. + ..+..+....+..++... .....+ ++||+.|+.++||+|
T Consensus 105 WsHmtvLeNViEa-PvhV-L--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~--LSGGQQQR~aIARaL----------- 167 (256)
T COG4598 105 WSHMTVLENVIEA-PVHV-L--GVSKAEAIERAEKYLAKVGIAEKADAYPAH--LSGGQQQRVAIARAL----------- 167 (256)
T ss_pred hHHHHHHHHHHhc-chHh-h--cCCHHHHHHHHHHHHHHhCchhhhhcCccc--cCchHHHHHHHHHHH-----------
Confidence 2222222222221 1100 0 001111111222222221 111223 469999999999999
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh----hhccCCCcccC
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK----RKHKGEETEED 582 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~~ 582 (604)
+..|.++|+||| |++||++....+... ..+++.|.|+++|||.+.++.++. =-|+|-..++.
T Consensus 168 -ameP~vmLFDEP-TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 168 -AMEPEVMLFDEP-TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred -hcCCceEeecCC-cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 555999999999 999999998888777 778889999999999999998884 45777766543
No 187
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.3e-18 Score=183.50 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=117.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
+.-+++|||+||||||||+++|+|+.+++.|.+...+...+.+. +.+.+..+..-++.|+...... +..+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN--i~l~----- 418 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN--ILLA----- 418 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH--hhcc-----
Confidence 34579999999999999999999999999998876655544332 2233444443344444332221 2222
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
........+...+++.++.+++.- |.. +-..+. ..|.. +||||.|+..+||++++.
T Consensus 419 ~~~~s~e~i~~al~~a~l~~~v~~--p~G--------Ldt~ig-e~G~~-LSgGQ~QRlaLARAll~~------------ 474 (559)
T COG4988 419 RPDASDEEIIAALDQAGLLEFVPK--PDG--------LDTVIG-EGGAG-LSGGQAQRLALARALLSP------------ 474 (559)
T ss_pred CCcCCHHHHHHHHHHhcHHHhhcC--CCc--------ccchhc-cCCCC-CCHHHHHHHHHHHHhcCC------------
Confidence 111224556667777777665532 221 001111 22322 579999999999999554
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhhc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRKH 574 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~~ 574 (604)
++++|+||| |+|||.++...+.+. .++. .+.|||||||++..+...+++.
T Consensus 475 ~~l~llDEp-TA~LD~etE~~i~~~l~~l~-~~ktvl~itHrl~~~~~~D~I~ 525 (559)
T COG4988 475 ASLLLLDEP-TAHLDAETEQIILQALQELA-KQKTVLVITHRLEDAADADRIV 525 (559)
T ss_pred CCEEEecCC-ccCCCHhHHHHHHHHHHHHH-hCCeEEEEEcChHHHhcCCEEE
Confidence 999999999 999999998888777 3333 3599999999999998886554
No 188
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=7.2e-18 Score=169.41 Aligned_cols=167 Identities=15% Similarity=0.092 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCCe-EEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.+||+|+||+|||||+++|+|..++..|.+...+....... ....+ ++.+.+.++........+........... .
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~-~ 105 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-A 105 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCH-H
Confidence 469999999999999999999999998887654433221110 01111 22233322211111111100000000000 0
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++...+ .+.....|+|+.++..+|++++.+ |++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~----------------------~~~~~~lS~G~~qrl~laral~~~------------p~l 151 (232)
T cd03300 106 EIKERVAEALDLVQLEGYA----------------------NRKPSQLSGGQQQRVAIARALVNE------------PKV 151 (232)
T ss_pred HHHHHHHHHHHHcCCchhh----------------------cCChhhCCHHHHHHHHHHHHHhcC------------CCE
Confidence 0001122222222221110 112234678999999999998555 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
+||||| |++||+.++..|.++ ..+.+ .|.|||++||++.++..+
T Consensus 152 lllDEP-~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~ 197 (232)
T cd03300 152 LLLDEP-LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM 197 (232)
T ss_pred EEEcCC-cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999 999999999999888 44444 489999999999998765
No 189
>PRK12288 GTPase RsgA; Reviewed
Probab=99.73 E-value=3e-17 Score=173.57 Aligned_cols=178 Identities=24% Similarity=0.277 Sum_probs=125.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhh--ccCCCcEEEEEeCCCCCCHH---hHHHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVT--GTLGKDMILVMNKIDLAPAP---LVLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~--~~~~K~~ILVlNK~DLv~~~---~~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
+..++|.+++|.+. .|.+++ ..|.+|+. +..++++|||+||+||++.. ....|..+|... ++.++++||.
T Consensus 117 iaANvD~vlIV~s~-~p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~--g~~v~~vSA~- 191 (347)
T PRK12288 117 IAANIDQIVIVSAV-LPELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI--GYRVLMVSSH- 191 (347)
T ss_pred EEEEccEEEEEEeC-CCCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC--CCeEEEEeCC-
Confidence 57899998888876 454333 34677765 24578999999999999854 356787777654 4678888986
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhh
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETI 348 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 348 (604)
++.|+++|.+.+..
T Consensus 192 ---------------------------tg~GideL~~~L~~--------------------------------------- 205 (347)
T PRK12288 192 ---------------------------TGEGLEELEAALTG--------------------------------------- 205 (347)
T ss_pred ---------------------------CCcCHHHHHHHHhh---------------------------------------
Confidence 45677777654421
Q ss_pred hhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCCC
Q psy3589 349 ELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCPG 421 (604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~pG 421 (604)
..++|+|+||||||||||+|+|.....+|.+++ +|++.+.+.+..+..++||||
T Consensus 206 -------------------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPG 266 (347)
T PRK12288 206 -------------------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPG 266 (347)
T ss_pred -------------------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCC
Confidence 137899999999999999999998888888865 455666777777778999999
Q ss_pred ccCCCCCChhhhHhhcccccccccCchHHHHHHHHhcCHHHHhhcCCCC
Q psy3589 422 LVFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPD 470 (604)
Q Consensus 422 l~~p~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~ 470 (604)
+.......... ..+...+..+..++..|.+..|.|...|.
T Consensus 267 ir~~~l~~~~~---------~~l~~~F~ei~~~~~~CrF~dC~H~~Epg 306 (347)
T PRK12288 267 VREFGLWHLEP---------EQVTQGFVEFRDYLGTCKFRDCKHDDDPG 306 (347)
T ss_pred CCcccCCCCCH---------HHHHHhhHHHHHHhcCCCCCCCccCCCCC
Confidence 97443321111 11222344556667778888888877664
No 190
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.2e-18 Score=166.43 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCC-------CCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFP-------SKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p-------~~~~~~~~~l~g~~~ 440 (604)
-+++|+|+|||||||||++|+|...++.|.+...++.+...... ..+....|++.+ ........++.|.+.
T Consensus 58 e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~--~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~ 135 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI--FELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135 (257)
T ss_pred CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch--HHHHHHhCccCHHHHhhcccccccceeeeecccc
Confidence 37899999999999999999999999866654333322111000 011112233321 111111112233222
Q ss_pred ccccc------CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccc
Q psy3589 441 IAQLR------EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEG 514 (604)
Q Consensus 441 i~~l~------~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG 514 (604)
...+. .....+..+++.+++.. ...+.|-++|-|+.++..+||+++.+
T Consensus 136 siG~y~~~~~~~~~~~a~~lle~~g~~~----------------------la~r~~~~LS~Ge~rrvLiaRALv~~---- 189 (257)
T COG1119 136 SIGIYQEDLTAEDLAAAQWLLELLGAKH----------------------LADRPFGSLSQGEQRRVLIARALVKD---- 189 (257)
T ss_pred cccccccCCCHHHHHHHHHHHHHcchhh----------------------hccCchhhcCHhHHHHHHHHHHHhcC----
Confidence 11110 01111222222222111 11244556778999999999999777
Q ss_pred eeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCC--CCeEEEEecChhhhhhh
Q psy3589 515 RICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY--KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 515 ~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~--g~tVIiVTHD~~e~~~~ 570 (604)
|.+|||||| ++|||...+..+.+. ..+... +.++|+|||..+++..+
T Consensus 190 --------P~LLiLDEP-~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~ 239 (257)
T COG1119 190 --------PELLILDEP-AQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239 (257)
T ss_pred --------CCEEEecCc-cccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccc
Confidence 999999999 999999999777776 444433 67899999999998765
No 191
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=5.1e-18 Score=189.65 Aligned_cols=163 Identities=15% Similarity=0.053 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe----cCC-eEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL----TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~----~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+||+|+|||||||||++|+|+..+..|.+...+..+..... ... .++.+.+.+. +.. .....+..+...
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~-~~~-tv~e~l~~~~~~-- 113 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF-PNL-SVKENILFGLPK-- 113 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccC-CCC-cHHHHhhccccc--
Confidence 3599999999999999999999999988877544433211100 011 1333333322 111 111111111100
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.......+..++..+++.. .+ .+....+|||+.++..+|++++.+
T Consensus 114 -~~~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~LSgG~~qrv~la~aL~~~------------ 158 (510)
T PRK15439 114 -RQASMQKMKQLLAALGCQL--------------------DL--DSSAGSLEVADRQIVEILRGLMRD------------ 158 (510)
T ss_pred -chHHHHHHHHHHHHcCCCc--------------------cc--cCChhhCCHHHHHHHHHHHHHHcC------------
Confidence 0000111222222222210 00 122234679999999999999555
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+..+.++.++ ..+.+.|.|||+||||++++..+
T Consensus 159 p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~ 206 (510)
T PRK15439 159 SRILILDEP-TASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQL 206 (510)
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 55555689999999999998765
No 192
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=1e-17 Score=163.13 Aligned_cols=167 Identities=14% Similarity=0.137 Sum_probs=109.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec----CCeEE-ecCCCccCCCCCChhhhHhhccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT----DNIRL-CDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~----~~~~l-~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.++|+|+|||||||||++|+|+.++..|.+...+.++...... .++.+ .+... +||.. +.......|.+....
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~-iF~~L-TVeENL~~g~~~~~~ 108 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR-IFPRL-TVEENLLLGAYARRD 108 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc-chhhC-cHHHHHhhhhhcccc
Confidence 5899999999999999999999999999887777665443211 12222 22222 23433 222333333222211
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.......++.+.+.+| .+.+...+..|. +|||+.|..++||+|+.. |
T Consensus 109 ~~~~~~~~e~v~~lFP-------------------~Lker~~~~aG~--LSGGEQQMLAiaRALm~~------------P 155 (237)
T COG0410 109 KEAQERDLEEVYELFP-------------------RLKERRNQRAGT--LSGGEQQMLAIARALMSR------------P 155 (237)
T ss_pred cccccccHHHHHHHCh-------------------hHHHHhcCcccC--CChHHHHHHHHHHHHhcC------------C
Confidence 0000000222222221 122233334454 469999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~~ 571 (604)
++|+|||| |.||-|.-+..+.+. ..+++. +.||++|.++...|.++.
T Consensus 156 klLLLDEP-s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~ia 204 (237)
T COG0410 156 KLLLLDEP-SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIA 204 (237)
T ss_pred CEEEecCC-ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhh
Confidence 99999999 999999998888877 667644 779999999999998884
No 193
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=7e-18 Score=171.31 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=60.7
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..
T Consensus 145 ~~LSgG~~qrv~laral~~~------------p~lllLDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQ------------PEVLLADEP-TANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAAR 210 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence 34679999999999999555 999999999 999999999999888 44443 7899999999998865
Q ss_pred h-h---hhccCCCcc
Q psy3589 570 V-K---RKHKGEETE 580 (604)
Q Consensus 570 ~-~---~~~~~~~~~ 580 (604)
+ . ...+|....
T Consensus 211 ~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 211 ISDYVAFLYKGQIVE 225 (250)
T ss_pred hcCEEEEEECCeEEE
Confidence 4 2 334555543
No 194
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.73 E-value=9.2e-18 Score=170.97 Aligned_cols=178 Identities=15% Similarity=0.044 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc----cccCcCcccceeEEEEe-cC-CeEEecCCCccCCCCCChhhhHh--hccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV----SVSRTPGHTKHFQTIFL-TD-NIRLCDCPGLVFPSKVPKPLQVL--MGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~----~~g~i~g~t~~~q~~~~-~~-~~~l~D~pGl~~p~~~~~~~~~l--~g~~ 439 (604)
-.++|+|+||||||||+++|+|+.++ +.|.+...+..+..... .. ..++.+.+...+........... ...+
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL 109 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence 36999999999999999999999988 77766544433221111 11 12333333322211111000000 0000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
. .......+..++..+++... ...+ ......+|||+.++..+|++++.+
T Consensus 110 ~---~~~~~~~~~~~l~~~~l~~~-----------------~~~~--~~~~~~LS~Gq~qrv~laral~~~--------- 158 (254)
T PRK10418 110 G---KPADDATLTAALEAVGLENA-----------------ARVL--KLYPFEMSGGMLQRMMIALALLCE--------- 158 (254)
T ss_pred C---CChHHHHHHHHHHHcCCCCh-----------------hhhh--hcCCcccCHHHHHHHHHHHHHhcC---------
Confidence 0 00000112222222221100 0000 112234679999999999999555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh-h---hhccCCCcc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV-K---RKHKGEETE 580 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~-~---~~~~~~~~~ 580 (604)
|++|||||| |++||..++..+.++ ..+. +.|.|||||||+++++..+ . ...+|....
T Consensus 159 ---p~lLlLDEP-t~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 159 ---APFIIADEP-TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred ---CCEEEEeCC-CcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999998888877 4443 3489999999999998764 2 335555543
No 195
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.73 E-value=9.6e-18 Score=168.87 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+..+.... ....+ ++.+.+.+ ++. .....+.... . .
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-~~~--tv~~nl~~~~-~--~ 102 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVL-FNR--SIRDNIALAD-P--G 102 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchh-ccc--hHHHHhhccC-C--C
Confidence 369999999999999999999999998887755443321110 01112 22222222 221 1111111110 0 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+....+...+.. .+. .+-..+. .....+|||+.++..+|++++.+ |
T Consensus 103 --~~~~~~~~~~~~~~~~~~l~~-l~~--------~~~~~~~--~~~~~LSgG~~qrv~laral~~~------------p 157 (237)
T cd03252 103 --MSMERVIEAAKLAGAHDFISE-LPE--------GYDTIVG--EQGAGLSGGQRQRIAIARALIHN------------P 157 (237)
T ss_pred --CCHHHHHHHHHHcCcHHHHHh-Ccc--------cccchhh--cCCCcCCHHHHHHHHHHHHHhhC------------C
Confidence 001112222222222111100 000 0000011 12234679999999999999665 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
+++||||| |++||+.++..+.++ ..+.+ |.|||++|||++++..+. .-+.|...
T Consensus 158 ~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 215 (237)
T cd03252 158 RILIFDEA-TSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIV 215 (237)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999999999888 45544 899999999999986443 33555544
No 196
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=9e-18 Score=169.04 Aligned_cols=174 Identities=18% Similarity=0.138 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCCe-EEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.+||+|+||+|||||+++|+|+.+++.|.+...+....... ....+ ++.+.+.+ ++... ....+..+. ......
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~-~~~~t-~~e~l~~~~-~~~~~~ 102 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYAL-FPHMT-VYKNIAYGL-KKRKVD 102 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCcc-CCCcc-HHHHHHHHH-HHcCCC
Confidence 479999999999999999999999998887654443321100 01112 22222222 11110 111110000 000000
Q ss_pred --CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 446 --EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 446 --~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++... + .+...++|||+.++..+|++++.+ |
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~--------------------~--~~~~~~LS~G~~qrl~laral~~~------------p 148 (235)
T cd03299 103 KKEIERKVLEIAEMLGIDHL--------------------L--NRKPETLSGGEQQRVAIARALVVN------------P 148 (235)
T ss_pred HHHHHHHHHHHHHHcCChhH--------------------H--hcCcccCCHHHHHHHHHHHHHHcC------------C
Confidence 000111122222222110 1 112234678999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh-h---hhccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV-K---RKHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~-~---~~~~~~~~ 579 (604)
++++|||| |++||+.++..+.++ ..+.. .+.|||++||++.++..+ . ...+|...
T Consensus 149 ~llllDEP-t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 149 KILLLDEP-FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred CEEEECCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999999999887 44433 489999999999998765 2 33455554
No 197
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=4.6e-18 Score=189.83 Aligned_cols=176 Identities=14% Similarity=0.057 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc--cccCcCcccceeEEEEe----cC-CeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV--SVSRTPGHTKHFQTIFL----TD-NIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~--~~g~i~g~t~~~q~~~~----~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.++ +.|.+...+..+..... .. -.++.+.+.+. +.. .....+..+...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~-~~~-tv~e~l~~~~~~ 109 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALV-KEL-SVLENIFLGNEI 109 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccC-CCC-cHHHHhhhcccc
Confidence 46999999999999999999999886 67776544333211100 01 12333333322 111 111111111000
Q ss_pred c--cccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhcccee
Q psy3589 441 I--AQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRI 516 (604)
Q Consensus 441 i--~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l 516 (604)
. .... .....+..++..+++... ..+...++|||+.++..+|++++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LSgGqkqrv~la~al~~~------ 161 (506)
T PRK13549 110 TPGGIMDYDAMYLRAQKLLAQLKLDIN----------------------PATPVGNLGLGQQQLVEIAKALNKQ------ 161 (506)
T ss_pred cccCCcCHHHHHHHHHHHHHHcCCCCC----------------------cccchhhCCHHHHHHHHHHHHHhcC------
Confidence 0 0000 001112222332222100 0112234679999999999999655
Q ss_pred eeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 517 CLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 517 ~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+..+..+.++ ..+.+.|.||||||||++++..+ ...++|....
T Consensus 162 ------p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 162 ------ARLLILDEP-TASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred ------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999 999999999999888 55555689999999999998765 2345555443
No 198
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=7.5e-18 Score=171.37 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=60.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 149 ~LSgGq~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~ 214 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVE------------PEVLLMDEP-ASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARV 214 (253)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 44543 78999999999998764
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
. ...+|....
T Consensus 215 ~d~v~~l~~G~i~~ 228 (253)
T PRK14242 215 SDVTAFFYMGKLIE 228 (253)
T ss_pred CCEEEEEECCEEEE
Confidence 2 335555543
No 199
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.73 E-value=8.8e-18 Score=170.53 Aligned_cols=83 Identities=14% Similarity=0.010 Sum_probs=61.5
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.... +.-.+|+++||||| |++||+..+..+.++ ..+.+.+.|||+||||++++..+
T Consensus 126 ~LS~G~~qrv~la~al~~~~~-----~~~p~p~llllDEP-t~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~ 199 (248)
T PRK03695 126 QLSGGEWQRVRLAAVVLQVWP-----DINPAGQLLLLDEP-MNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRH 199 (248)
T ss_pred cCCHHHHHHHHHHHHHhcccc-----ccCCCCCEEEEcCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 357999999999999954000 00014799999999 999999999999888 45555689999999999988665
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
...++|....
T Consensus 200 ~d~i~~l~~G~i~~ 213 (248)
T PRK03695 200 ADRVWLLKQGKLLA 213 (248)
T ss_pred CCEEEEEECCEEEE
Confidence 2345565543
No 200
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.73 E-value=8.6e-18 Score=169.43 Aligned_cols=176 Identities=18% Similarity=0.078 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCCe-EEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+.+..... ....+ ++.+.+.++........+........... .
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~-~ 105 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPK-A 105 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCH-H
Confidence 469999999999999999999999988887644333321110 01112 22233322211111111100000000000 0
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++.. .. .......|+|+.++..+|++++.+ |++
T Consensus 106 ~~~~~~~~~l~~~~l~~--------------------~~--~~~~~~lS~G~~qrl~laral~~~------------p~l 151 (237)
T TIGR00968 106 KIKARVEELLELVQLEG--------------------LG--DRYPNQLSGGQRQRVALARALAVE------------PQV 151 (237)
T ss_pred HHHHHHHHHHHHcCCHh--------------------Hh--hCChhhCCHHHHHHHHHHHHHhcC------------CCE
Confidence 00011112222221110 00 111223568888888888888555 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh-h---hhccCCCc
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV-K---RKHKGEET 579 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~-~---~~~~~~~~ 579 (604)
+||||| |++||..+...+.++ ..+.+. +.|||++||++.++..+ . ....|...
T Consensus 152 lllDEP-~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 152 LLLDEP-FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred EEEcCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 999999 999999999999888 444443 79999999999998764 3 33555544
No 201
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=5.8e-18 Score=169.50 Aligned_cols=170 Identities=18% Similarity=0.139 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
.++|+|+|||||||||++|+|+.++..|.+...+..+.... ....+ ++.+.+.+ ++. .....+.... .
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-~~~--tv~~~~~~~~-~---- 102 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFL-FSG--TIMENIRLGR-P---- 102 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchh-hhh--HHHHHHhccC-C----
Confidence 59999999999999999999999998887654433221100 01111 12222211 111 0100110000 0
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+...+..+++...+... |. .+...+. .....+|||+.++..+|++++.+ |+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~-~~--------~~~~~~~--~~~~~LS~G~~~rv~la~al~~~------------p~ 159 (229)
T cd03254 103 NATDEEVIEAAKEAGAHDFIMKL-PN--------GYDTVLG--ENGGNLSQGERQLLAIARAMLRD------------PK 159 (229)
T ss_pred CCCHHHHHHHHHHhChHHHHHhC-cc--------cccCHhh--cCCCcCCHHHHHHHHHHHHHhcC------------CC
Confidence 00111222222222222211100 00 0000111 11234679999999999999555 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
++||||| |++||+.++..+.++ ..+. .+.|||+|||++.++..+.
T Consensus 160 llllDEP-~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d 205 (229)
T cd03254 160 ILILDEA-TSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNAD 205 (229)
T ss_pred EEEEeCc-cccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCC
Confidence 9999999 999999999999888 4454 4889999999999986543
No 202
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6.1e-18 Score=159.87 Aligned_cols=162 Identities=15% Similarity=0.043 Sum_probs=102.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhh---Hhhccccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQ---VLMGSFPIAQLR 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~---~l~g~~~i~~l~ 445 (604)
.+.++||+|||||||||+++|+..|+.|.+....+.+..-- .....+++.+++........... .+.|+-+.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~---- 107 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA---- 107 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-ccceeEeccCccchhhHHHHHHHHHHHhcCCCHH----
Confidence 58899999999999999999999998887754444332111 12334455555543322111111 11121110
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++.. +. ......+|||+.|+..+||++ +.+|++
T Consensus 108 ~R~~~a~q~l~~VgL~~---------------------~~-~~~i~qLSGGmrQRvGiARAL------------a~eP~~ 153 (259)
T COG4525 108 QRREIAHQMLALVGLEG---------------------AE-HKYIWQLSGGMRQRVGIARAL------------AVEPQL 153 (259)
T ss_pred HHHHHHHHHHHHhCccc---------------------cc-ccceEeecchHHHHHHHHHHh------------hcCcce
Confidence 00111222222222211 11 112234679999999999999 445999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-h-hhcCCCCeEEEEecChhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-T-KEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~-~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+|||| +..||.-+++.++.+ . ..+..|+.+++||||.+|+.-+
T Consensus 154 LlLDEP-fgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 154 LLLDEP-FGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred EeecCc-hhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 999999 999999998888877 2 3466799999999999998665
No 203
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.73 E-value=4.4e-18 Score=179.55 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=61.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++||+||| |++||+.++..+.++ ..+.+ .|.||||||||+.++..
T Consensus 161 ~LSgG~~QRv~IArAL~~~------------P~llilDEP-ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~ 227 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCR------------PKLLIADEP-TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAG 227 (330)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 3579999999999999555 999999999 999999999988887 45543 58999999999999876
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ..-+.|...+
T Consensus 228 ~~Dri~vm~~G~ive 242 (330)
T PRK09473 228 ICDKVLVMYAGRTME 242 (330)
T ss_pred hCCEEEEEECCEEEE
Confidence 5 2335555544
No 204
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1e-17 Score=171.02 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=56.5
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+. .+.|||+||||++++..
T Consensus 147 ~~LS~G~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~ 212 (258)
T PRK14241 147 GGLSGGQQQRLCIARAIAVE------------PDVLLMDEP-CSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAAR 212 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHH
Confidence 34679999999999999555 999999999 999999999999888 4454 36899999999999876
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 213 ~ 213 (258)
T PRK14241 213 V 213 (258)
T ss_pred h
Confidence 5
No 205
>PRK13796 GTPase YqeH; Provisional
Probab=99.72 E-value=9.4e-17 Score=171.62 Aligned_cols=152 Identities=30% Similarity=0.387 Sum_probs=114.4
Q ss_pred HHHHHHhhhcC-EEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCH----HhHHHHHHHHHhhCC--CceE
Q psy3589 189 RQLWRVLEMSD-IILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPA----PLVLAWKHYFQSKFP--KLTI 261 (604)
Q Consensus 189 RQlwrviE~sD-iVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~----~~~~~w~~yf~~~~p--~~~v 261 (604)
+.+.+.+..+| +|++|||+.++..+..+.|.+++. ++++|+|+||+||++. .....|..++...+. ...+
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v 136 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG---NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDV 136 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC---CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcE
Confidence 33445555555 999999999988888888887764 6899999999999864 345668776654431 1257
Q ss_pred EEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhh
Q psy3589 262 LCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEK 341 (604)
Q Consensus 262 v~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~ 341 (604)
+++||. .+.|+.+|++.+.+..
T Consensus 137 ~~vSAk----------------------------~g~gI~eL~~~I~~~~------------------------------ 158 (365)
T PRK13796 137 VLISAQ----------------------------KGHGIDELLEAIEKYR------------------------------ 158 (365)
T ss_pred EEEECC----------------------------CCCCHHHHHHHHHHhc------------------------------
Confidence 788886 4567777777664310
Q ss_pred hhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCC-----CccccCcCcccceeEEEEecCCeEE
Q psy3589 342 VEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRK-----VVSVSRTPGHTKHFQTIFLTDNIRL 416 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~-----~~~~g~i~g~t~~~q~~~~~~~~~l 416 (604)
....+.+||.+|||||||||+|.+.. .++++..||+|.+.+.+.+..+..+
T Consensus 159 ------------------------~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l 214 (365)
T PRK13796 159 ------------------------EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFL 214 (365)
T ss_pred ------------------------CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEE
Confidence 01368899999999999999998643 4567899999999999888888899
Q ss_pred ecCCCccCC
Q psy3589 417 CDCPGLVFP 425 (604)
Q Consensus 417 ~D~pGl~~p 425 (604)
+||||+..+
T Consensus 215 ~DTPGi~~~ 223 (365)
T PRK13796 215 YDTPGIIHR 223 (365)
T ss_pred EECCCcccc
Confidence 999999743
No 206
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=7.7e-19 Score=166.64 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=112.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-----eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-----IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-----~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-|||+||||+||||.+++++|+.+++.|.+.....++....+... .++.+.|.++-.-.+...+.....+...+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~ 111 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL 111 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcch
Confidence 599999999999999999999999999988777666654433221 223333322211111111111111000000
Q ss_pred c-cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 444 L-REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 444 l-~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. ......+..+++.+.+ ..+. .....++|||+..+..+||+|.. +
T Consensus 112 ~~~~~~~~l~~LL~ef~i---------------------~hlr-~~~a~sLSGGERRR~EIARaLa~------------~ 157 (243)
T COG1137 112 KKAERKEELDALLEEFHI---------------------THLR-DSKAYSLSGGERRRVEIARALAA------------N 157 (243)
T ss_pred hHHHHHHHHHHHHHHhch---------------------HHHh-cCcccccccchHHHHHHHHHHhc------------C
Confidence 0 0000001111111111 1111 12234578999999999999944 4
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh----hhccCCCcccC
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK----RKHKGEETEED 582 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~~ 582 (604)
|.++||||| ++|.||.++..++.+ ..|+..|..|+|+-|+..|...+. .+++|..-++.
T Consensus 158 P~fiLLDEP-FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G 221 (243)
T COG1137 158 PKFILLDEP-FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEG 221 (243)
T ss_pred CCEEEecCC-ccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecC
Confidence 999999999 999999999999888 778899999999999999987774 45677665543
No 207
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=9.9e-18 Score=170.67 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=56.5
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..++ .+.|||+||||++++..+
T Consensus 150 ~LSgG~~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~ 215 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIE------------PNVILMDEP-TSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRI 215 (254)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHh
Confidence 4679999999999999665 999999999 999999999999888 4554 378999999999998765
No 208
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.8e-18 Score=192.22 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCC-ccCCCCCChhhhHhhcc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPG-LVFPSKVPKPLQVLMGS- 438 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pG-l~~p~~~~~~~~~l~g~- 438 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.... .... .++.+.|. ..++.. .....+....
T Consensus 351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~-tv~~~l~~~~~ 429 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ-TVGDSIMEPLR 429 (623)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCC-CHHHHHHHHHH
Confidence 469999999999999999999999998888765443322110 0111 22333331 112211 1111111000
Q ss_pred -cccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 439 -FPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 439 -~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
.....-......+..++..+++.. ..+ .+....+|||+.++..+|++++.+
T Consensus 430 ~~~~~~~~~~~~~~~~~L~~~gL~~-------------------~~~--~~~~~~LSgGqrQRv~iAraL~~~------- 481 (623)
T PRK10261 430 VHGLLPGKAAAARVAWLLERVGLLP-------------------EHA--WRYPHEFSGGQRQRICIARALALN------- 481 (623)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCCH-------------------HHh--hCCcccCCHHHHHHHHHHHHHhcC-------
Confidence 000000000111222333322210 001 112234679999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+..+..+.++ ..+.+ .|.||||||||++++..+ ....+|...+
T Consensus 482 -----p~llllDEP-ts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~ 544 (623)
T PRK10261 482 -----PKVIIADEA-VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544 (623)
T ss_pred -----CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 45544 589999999999998775 2334555443
No 209
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.72 E-value=2e-17 Score=169.42 Aligned_cols=75 Identities=11% Similarity=-0.010 Sum_probs=60.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.+...+.++ ..+.+.|.|||+|||++.++..+
T Consensus 143 ~LS~Gq~qrv~Laral~~~------------p~iLlLDEP-t~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~ 209 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVN------------PDILVIDEA-LSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQF 209 (264)
T ss_pred cCCHHHHHHHHHHHHHhhC------------CCEEEEeCc-cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 4678999999999988655 999999999 999999998888877 44555689999999999998765
Q ss_pred ----hhhccCCCc
Q psy3589 571 ----KRKHKGEET 579 (604)
Q Consensus 571 ----~~~~~~~~~ 579 (604)
...+.|...
T Consensus 210 ~d~i~~l~~G~i~ 222 (264)
T PRK13546 210 CTKIAWIEGGKLK 222 (264)
T ss_pred cCEEEEEECCEEE
Confidence 233455544
No 210
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.5e-18 Score=189.44 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCC-eEEecCCCccCCCCCChhhhHhhccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPI- 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i- 441 (604)
-.+||+|+||||||||+++|+|+..++.|.+...+..+.... .... .++.+.+.+. +.. .....+..+....
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~-~~~-tv~e~l~~~~~~~~ 109 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVI-DEL-TVLENLYIGRHLTK 109 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccccc-CCC-cHHHHhhhcccccc
Confidence 469999999999999999999999988887754443321110 0011 2223333221 111 1111111111000
Q ss_pred --ccc-----cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccc
Q psy3589 442 --AQL-----REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEG 514 (604)
Q Consensus 442 --~~l-----~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG 514 (604)
... ......+..++..+++... ..+...++|||+.++..+|++++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------------------~~~~~~~LSgG~~qrv~ia~al~~~---- 163 (510)
T PRK09700 110 KVCGVNIIDWREMRVRAAMMLLRVGLKVD----------------------LDEKVANLSISHKQMLEIAKTLMLD---- 163 (510)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCC----------------------cccchhhCCHHHHHHHHHHHHHhcC----
Confidence 000 0000111222222221100 0112234679999999999999555
Q ss_pred eeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 515 RICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 515 ~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 164 --------p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~ 211 (510)
T PRK09700 164 --------AKVIIMDEP-TSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRI 211 (510)
T ss_pred --------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 55655689999999999998765
No 211
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1e-17 Score=170.98 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=61.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..
T Consensus 153 ~~LSgG~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~ 218 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAVK------------PKIILFDEP-TSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAAR 218 (258)
T ss_pred hhCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHH
Confidence 34679999999999999555 999999999 999999999999888 44543 7899999999999876
Q ss_pred h-h---hhccCCCcc
Q psy3589 570 V-K---RKHKGEETE 580 (604)
Q Consensus 570 ~-~---~~~~~~~~~ 580 (604)
+ . ..+.|....
T Consensus 219 ~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 219 ISDYTGFFLMGELIE 233 (258)
T ss_pred hCCEEEEEECCEEEE
Confidence 5 2 335565543
No 212
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.72 E-value=1.7e-17 Score=168.11 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=57.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+...+.|||+||||+.++..+
T Consensus 145 ~LS~G~~qrv~laral~~~------------p~illLDEP-t~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~ 211 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLE------------PELCILDES-DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYI 211 (248)
T ss_pred CCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 3679999999999999665 999999999 999999999999887 45556689999999999998774
No 213
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.72 E-value=1.8e-17 Score=169.49 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=61.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.. |++|||||| |++||+.++..|.++ ..+.+ .|.|||+||||++++..
T Consensus 152 ~LS~G~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~ 218 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQ------------AKVILADEP-IASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR 218 (262)
T ss_pred ccCHHHHHHHHHHHHHhcC------------CCEEEecCc-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3579999999999999555 999999999 999999999999888 44443 48999999999998766
Q ss_pred h----hhhccCCCccc
Q psy3589 570 V----KRKHKGEETEE 581 (604)
Q Consensus 570 ~----~~~~~~~~~~~ 581 (604)
+ ...++|.....
T Consensus 219 ~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 219 YCERIVALRQGHVFYD 234 (262)
T ss_pred hCCEEEEEECCEEEEe
Confidence 5 23356665443
No 214
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.72 E-value=1.6e-17 Score=170.89 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=62.1
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGK 568 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~ 568 (604)
.++|||+.++..+|++++..+.-- -...+|++|||||| |++||+.++..+.++ ..+.+ .+.|||+||||++++.
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~---~~~~~p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~ 219 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPH---DAAQPPRYLLLDEP-TAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA 219 (272)
T ss_pred ccCCHHHHHHHHHHHHHhcccccc---ccCCCCCEEEEcCc-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 346799999999999995300000 00035999999999 999999999999888 44444 4899999999999986
Q ss_pred hh----hhhccCCCcc
Q psy3589 569 NV----KRKHKGEETE 580 (604)
Q Consensus 569 ~~----~~~~~~~~~~ 580 (604)
.+ ....+|....
T Consensus 220 ~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 220 RHADRIAMLADGAIVA 235 (272)
T ss_pred HhCCEEEEEECCeEEE
Confidence 54 2335666544
No 215
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.72 E-value=2.1e-17 Score=164.32 Aligned_cols=170 Identities=16% Similarity=0.066 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-------ecCCe-EEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-------LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-------~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.++|+|+|||||||||++|+|+..+..|.+...+..+.... ....+ ++.+.+.+. +. .....+....
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~--t~~~nl~~~~- 103 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NA--TVEENITFGS- 103 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cc--cHHHHHhhcC-
Confidence 469999999999999999999999988887755444332111 01112 233333221 21 1111111110
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.. ....+..++..+++...+... |.. .-..+ ......+|||+.++..+|++++..
T Consensus 104 ~~-----~~~~~~~~~~~~~l~~~~~~~-~~~--------~~~~~--~~~~~~LS~G~~qrv~laral~~~--------- 158 (218)
T cd03290 104 PF-----NKQRYKAVTDACSLQPDIDLL-PFG--------DQTEI--GERGINLSGGQRQRICVARALYQN--------- 158 (218)
T ss_pred cC-----CHHHHHHHHHHhCcHHHHHhC-cCc--------cccCc--ccCCCcCCHHHHHHHHHHHHHhhC---------
Confidence 00 011112222332222111100 000 00000 011234679999999999999665
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHH--h-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQA--R-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~--~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+++||||| |++||+.++..+.+ + ..+++.+.|||++||+..++..+
T Consensus 159 ---p~illlDEP-t~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~ 208 (218)
T cd03290 159 ---TNIVFLDDP-FSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHA 208 (218)
T ss_pred ---CCEEEEeCC-ccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhC
Confidence 999999999 99999999887776 4 34556689999999999987644
No 216
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.7e-18 Score=187.83 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCC-eEEecCCCccCCCCCChhhhHhhccccc-
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPI- 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i- 441 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+. +.. .....+..+....
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~-~~~-tv~~~l~~~~~~~~ 108 (501)
T PRK11288 31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLV-PEM-TVAENLYLGQLPHK 108 (501)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhcc-CCC-CHHHHHHhcccccc
Confidence 369999999999999999999999998888754443321100 0111 2233333322 111 1111111111000
Q ss_pred ccccC---chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 442 AQLRE---PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 442 ~~l~~---~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
..... ....+..++..+++... ..+...++|||+.++..+|++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LSgGq~qrv~laral~~~-------- 158 (501)
T PRK11288 109 GGIVNRRLLNYEAREQLEHLGVDID----------------------PDTPLKYLSIGQRQMVEIAKALARN-------- 158 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCC----------------------cCCchhhCCHHHHHHHHHHHHHHhC--------
Confidence 00000 00112222222221100 0112234679999999999999666
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 159 ----p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~ 206 (501)
T PRK11288 159 ----ARVIAFDEP-TSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFAL 206 (501)
T ss_pred ----CCEEEEcCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 999999999 999999999999888 55555689999999999998765
No 217
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.72 E-value=1.5e-17 Score=170.73 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------ecCC-eEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.++|+|+||+|||||+++|+|+..+..|.+...+..+.... .... .++.+.+...+.........+......
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 369999999999999999999999988887754443322110 0111 223333321111111111000000000
Q ss_pred cccccC--chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 441 IAQLRE--PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 441 i~~l~~--~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
...... ....+..++..+++.. .. .......+|||+.++..+|++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~gl~~-------------------~~--~~~~~~~LS~Ge~qrl~laral~~~-------- 169 (268)
T PRK10419 119 LLSLDKAERLARASEMLRAVDLDD-------------------SV--LDKRPPQLSGGQLQRVCLARALAVE-------- 169 (268)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCh-------------------hH--hhCCCccCChHHHHHHHHHHHHhcC--------
Confidence 000000 0001112222211100 00 0122234679999999999999655
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||..++..+.++ ..+.+ .+.|||+||||++++..+
T Consensus 170 ----p~lllLDEP-t~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~ 218 (268)
T PRK10419 170 ----PKLLILDEA-VSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF 218 (268)
T ss_pred ----CCEEEEeCC-CcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh
Confidence 999999999 999999998888877 44443 489999999999998765
No 218
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7e-18 Score=187.74 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCC-eEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+.... .....+..+.+...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l~~~~~~~~ 102 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR--SVMDNMWLGRYPTK 102 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC--CHHHHhhccccccc
Confidence 369999999999999999999999998887754443321100 0111 2333333322111 11111111111100
Q ss_pred cc-cCc---hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 443 QL-REP---YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 443 ~l-~~~---~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
.. ... ...+..++..+++... ..+...++|||+.++..+|++++.+
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LSgGq~qrv~lA~al~~~-------- 152 (491)
T PRK10982 103 GMFVDQDKMYRDTKAIFDELDIDID----------------------PRAKVATLSVSQMQMIEIAKAFSYN-------- 152 (491)
T ss_pred ccccCHHHHHHHHHHHHHHcCCCCC----------------------ccCchhhCCHHHHHHHHHHHHHHhC--------
Confidence 00 000 0111222222211000 0112234679999999999999665
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 153 ----p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~ 200 (491)
T PRK10982 153 ----AKIVIMDEP-TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQL 200 (491)
T ss_pred ----CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 999999999 999999999999888 55556689999999999998765
No 219
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.72 E-value=1.5e-17 Score=166.46 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=56.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecCh-hhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDE-AEGK 568 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~-~e~~ 568 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+.+.|||++||+. .++.
T Consensus 142 ~~LS~G~~qrl~laral~~~------------p~illlDEP-~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~ 208 (226)
T cd03234 142 KGISGGERRRVSIAVQLLWD------------PKVLILDEP-TSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLF 208 (226)
T ss_pred cCcCHHHHHHHHHHHHHHhC------------CCEEEEeCC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHH
Confidence 34679999999999999665 999999999 999999999999888 44545588999999998 4665
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 209 ~~ 210 (226)
T cd03234 209 RL 210 (226)
T ss_pred Hh
Confidence 54
No 220
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.72 E-value=9e-18 Score=167.10 Aligned_cols=168 Identities=16% Similarity=0.167 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+..+.... ....+ ++.+.+.+. +. .....+.... ..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~--tv~e~l~~~~-~~-- 104 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF-YG--TLRDNITLGA-PL-- 104 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccc-cc--hHHHHhhcCC-CC--
Confidence 369999999999999999999999988887654443221100 01111 222333221 11 1111111110 00
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++...+.. .|.. .+ .. .......+|||+.++..+|++++.+ |
T Consensus 105 --~~~~~~~~~l~~~~l~~~~~~-~~~~------~~--~~--~~~~~~~LSgG~~qrl~la~al~~~------------p 159 (220)
T cd03245 105 --ADDERILRAAELAGVTDFVNK-HPNG------LD--LQ--IGERGRGLSGGQRQAVALARALLND------------P 159 (220)
T ss_pred --CCHHHHHHHHHHcCcHHHHHh-cccc------cc--ce--ecCCCccCCHHHHHHHHHHHHHhcC------------C
Confidence 011122333333333222110 0000 00 00 0011224679999999999999555 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
+++||||| |++||+.++..+.++ ..+.+ +.||||||||++++.
T Consensus 160 ~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~ 203 (220)
T cd03245 160 PILLLDEP-TSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLLD 203 (220)
T ss_pred CEEEEeCc-cccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH
Confidence 99999999 999999999999988 44444 389999999999864
No 221
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.2e-17 Score=171.38 Aligned_cols=75 Identities=17% Similarity=0.098 Sum_probs=60.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||++|||+.++..+
T Consensus 164 ~LSgGq~qrl~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~ 229 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMK------------PAVLLLDEP-ASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRV 229 (268)
T ss_pred cCCHHHHHHHHHHHHHhCC------------CCEEEEcCC-CcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHh
Confidence 4579999999999999555 999999999 999999999999888 44443 68999999999988765
Q ss_pred h----hhccCCCcc
Q psy3589 571 K----RKHKGEETE 580 (604)
Q Consensus 571 ~----~~~~~~~~~ 580 (604)
. ...+|....
T Consensus 230 ~d~v~~l~~G~i~~ 243 (268)
T PRK14248 230 SDRTAFFLNGDLVE 243 (268)
T ss_pred CCEEEEEECCEEEE
Confidence 2 235555543
No 222
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.6e-17 Score=168.84 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=61.1
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
...+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++.
T Consensus 145 ~~~LS~Gq~qr~~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~ 210 (251)
T PRK14251 145 AQAFSGGQQQRICIARALAVR------------PKVVLLDEP-TSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAG 210 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcC------------CCEEEecCC-CccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHH
Confidence 345679999999999999555 999999999 999999999999888 44433 689999999999987
Q ss_pred hh-h---hhccCCCcc
Q psy3589 569 NV-K---RKHKGEETE 580 (604)
Q Consensus 569 ~~-~---~~~~~~~~~ 580 (604)
.+ . .-.+|....
T Consensus 211 ~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 211 RISDQTAFLMNGDLIE 226 (251)
T ss_pred hhcCEEEEEECCEEEE
Confidence 65 2 234555543
No 223
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.9e-17 Score=169.93 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=60.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.. |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 163 ~LSgGq~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~ 228 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVS------------PEVILMDEP-CSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARV 228 (267)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhh
Confidence 4679999999999999555 999999999 999999999999888 44444 68999999999998665
Q ss_pred ----hhhccCCCc
Q psy3589 571 ----KRKHKGEET 579 (604)
Q Consensus 571 ----~~~~~~~~~ 579 (604)
....+|...
T Consensus 229 ~d~v~~l~~G~i~ 241 (267)
T PRK14235 229 SQRTAFFHLGNLV 241 (267)
T ss_pred CCEEEEEECCEEE
Confidence 233455544
No 224
>KOG0062|consensus
Probab=99.72 E-value=1.1e-17 Score=177.66 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=54.1
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.|||-.-+.++||++ +..||+|||||| |||||+.++.||.++ |..++.|+|+||||+.+...+
T Consensus 199 lSGGWrMrlaLARAl------------f~~pDlLLLDEP-TNhLDv~av~WLe~y--L~t~~~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 199 LSGGWRMRLALARAL------------FAKPDLLLLDEP-TNHLDVVAVAWLENY--LQTWKITSLIVSHDRNFLNTV 261 (582)
T ss_pred cCcchhhHHHHHHHH------------hcCCCEEeecCC-cccchhHHHHHHHHH--HhhCCceEEEEeccHHHHHHH
Confidence 456666666666666 555999999999 999999999999999 999999999999999998766
No 225
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.2e-17 Score=167.82 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=60.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+. .+.|||+||||+.++..+
T Consensus 147 ~LS~Gq~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIE------------PEVILMDEP-CSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARA 212 (251)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhh
Confidence 4679999999999999555 999999999 999999999999888 4443 478999999999998765
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
...++|....
T Consensus 213 ~d~i~~l~~G~i~~ 226 (251)
T PRK14249 213 SDWTGFLLTGDLVE 226 (251)
T ss_pred CCEEEEEeCCeEEE
Confidence 2344555543
No 226
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=1.1e-17 Score=167.40 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-++||||.||||||||-++|+|+..|+.|.+...++++..+. ....
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~----------------------------------~~~~ 85 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS----------------------------------KEER 85 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc----------------------------------hhHH
Confidence 479999999999999999999999999887765544321110 0011
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++..-.....| .. .||||.|+..+||+++-+ |++++
T Consensus 86 ~~~v~elL~~Vgl~~~~~~ryP-------------------he--lSGGQrQRi~IARALal~------------P~liV 132 (268)
T COG4608 86 RERVLELLEKVGLPEEFLYRYP-------------------HE--LSGGQRQRIGIARALALN------------PKLIV 132 (268)
T ss_pred HHHHHHHHHHhCCCHHHhhcCC-------------------cc--cCchhhhhHHHHHHHhhC------------CcEEE
Confidence 2234455555544322212222 22 469999999999999554 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh----hhhccCCCcccCcCc
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV----KRKHKGEETEEDEGE 585 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~~~~~ 585 (604)
+||| +++||...+..+.++ ..++ +.|.|.++||||+..+..+ ..-+.|.+++++..+
T Consensus 133 ~DEp-vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 133 ADEP-VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred ecCc-hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHH
Confidence 9999 999999998888887 4444 4599999999999999877 466778887765444
No 227
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.2e-17 Score=186.85 Aligned_cols=76 Identities=16% Similarity=0.040 Sum_probs=63.0
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.||||||||++++..+
T Consensus 409 ~LSgGq~qrv~lAral~~~------------p~lLlLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~ 475 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCC------------PEVIIFDEP-TRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITV 475 (510)
T ss_pred cCChHHHHHHHHHHHHhcC------------CCEEEECCC-CCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh
Confidence 4679999999999999555 999999999 999999999999888 55555689999999999998765
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 476 ~d~i~~l~~G~i~~ 489 (510)
T PRK09700 476 CDRIAVFCEGRLTQ 489 (510)
T ss_pred CCEEEEEECCEEEE
Confidence 3445666554
No 228
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.8e-17 Score=189.53 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=56.4
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.++|||+.++..+|++|+ .+|++|||||| |||||+.++.+|.++ +..+++||||||||+.++..+
T Consensus 148 ~~LSgGerqRv~LA~aL~------------~~P~lLLLDEP-tn~LD~~~~~~L~~~--L~~~~~tviivsHd~~~l~~~ 212 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALI------------CRSDLLLLDEP-TNHLDLDAVIWLEKW--LKSYQGTLILISHDRDFLDPI 212 (638)
T ss_pred hhcCHHHHHHHHHHHHHc------------cCCCEEEEcCC-CCcCCHHHHHHHHHH--HHhCCCeEEEEeCCHHHHHHh
Confidence 345688888888888884 45999999999 999999999999999 777788999999999998766
No 229
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.6e-17 Score=166.83 Aligned_cols=179 Identities=18% Similarity=0.145 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+.++..|.+...+..+.... ....+ ++.+.+.+ ++. .....+..... .
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~-~~~--tv~enl~~~~~---~ 102 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFL-FND--TVAENIAYGRP---G 102 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCee-ccc--cHHHHhhccCC---C
Confidence 369999999999999999999999998887754443221110 01111 22222222 121 11111111100 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+........+...+... +. . +... .......+|||+.++..+|++++.. |
T Consensus 103 --~~~~~~~~~~~~~~~~~~~~~l-~~--------~-l~~~-~~~~~~~LS~G~~qrv~la~al~~~------------p 157 (234)
T cd03251 103 --ATREEVEEAARAANAHEFIMEL-PE--------G-YDTV-IGERGVKLSGGQRQRIAIARALLKD------------P 157 (234)
T ss_pred --CCHHHHHHHHHHcCcHHHHHhc-cc--------C-ccee-eccCCCcCCHHHHHHHHHHHHHhcC------------C
Confidence 0011122222222221111000 00 0 0000 0112234679999999999999555 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
+++||||| |++||+.+...+.++ ..+.+ +.|||+||||+.++..+.+. +.|...
T Consensus 158 ~lllLDEP-~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~ 215 (234)
T cd03251 158 PILILDEA-TSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIV 215 (234)
T ss_pred CEEEEeCc-cccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEe
Confidence 99999999 999999999999888 44543 88999999999998765433 555554
No 230
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.9e-17 Score=168.19 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=60.3
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.. |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..
T Consensus 145 ~~LS~Gq~qr~~la~al~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~ 210 (250)
T PRK14262 145 TRLSGGQQQRLCIARALAVE------------PEVILLDEP-TSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIR 210 (250)
T ss_pred hhcCHHHHHHHHHHHHHhCC------------CCEEEEeCC-ccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHH
Confidence 34678999999999998555 999999999 999999999999888 44443 6899999999998766
Q ss_pred h-h---hhccCCCcc
Q psy3589 570 V-K---RKHKGEETE 580 (604)
Q Consensus 570 ~-~---~~~~~~~~~ 580 (604)
+ . ...+|....
T Consensus 211 ~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 211 IADYIAFMYRGELIE 225 (250)
T ss_pred hCCEEEEEECCEEEE
Confidence 4 2 334555543
No 231
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.9e-17 Score=168.34 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=60.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 148 ~LS~G~~qrl~laral~~~------------p~llllDEP-~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~ 213 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVK------------PEVILMDEP-ASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARV 213 (252)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhh
Confidence 4679999999999999555 999999999 999999999999887 45544 58999999999998764
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
+ ....|....
T Consensus 214 ~d~i~~l~~G~i~~ 227 (252)
T PRK14256 214 SDYTAFFYMGDLVE 227 (252)
T ss_pred CCEEEEEECCEEEE
Confidence 2 334555443
No 232
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.71 E-value=1.6e-17 Score=184.80 Aligned_cols=66 Identities=17% Similarity=0.039 Sum_probs=58.0
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 135 ~LSgG~~qrv~la~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~ 201 (490)
T PRK10938 135 YLSTGETRKTLLCQALMSE------------PDLLILDEP-FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDF 201 (490)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhh
Confidence 4679999999999999665 999999999 999999999999988 55555589999999999998765
No 233
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.8e-17 Score=168.31 Aligned_cols=75 Identities=19% Similarity=0.123 Sum_probs=60.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 146 ~LS~G~~qrv~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~ 211 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVE------------PEVLLMDEP-TSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRI 211 (250)
T ss_pred CCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhh
Confidence 4679999999999999555 999999999 999999999999888 44543 78999999999988764
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 212 ~d~v~~l~~G~i~~ 225 (250)
T PRK14240 212 SDKTAFFLNGEIVE 225 (250)
T ss_pred CCEEEEEECCEEEE
Confidence 2335565543
No 234
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.2e-17 Score=167.81 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=61.3
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.||||||||+.++..
T Consensus 147 ~~LS~G~~qrv~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~ 212 (252)
T PRK14272 147 TGLSGGQQQRLCIARALAVE------------PEILLMDEP-TSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAAR 212 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHH
Confidence 34679999999999999655 999999999 999999999999888 44443 6999999999999887
Q ss_pred h-h---hhccCCCcc
Q psy3589 570 V-K---RKHKGEETE 580 (604)
Q Consensus 570 ~-~---~~~~~~~~~ 580 (604)
+ + ....|....
T Consensus 213 ~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 213 VSDTTSFFLVGDLVE 227 (252)
T ss_pred hCCEEEEEECCEEEE
Confidence 5 3 335555543
No 235
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=7.9e-18 Score=169.64 Aligned_cols=164 Identities=17% Similarity=0.092 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec--------CCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT--------DNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~--------~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
.+.|+|-+|||||||+++|.++..|+.|.+...++++..+... ....+++.-|+.....+-. .+..|. .
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~--Nv~fGL-e 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLE--NVAFGL-E 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhh--hhhcce-e
Confidence 4679999999999999999999999999987777654332211 0111122222221111000 000000 0
Q ss_pred cccc--cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHh-cchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 441 IAQL--REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQK-RSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 441 i~~l--~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~-rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
+..+ .+....+...++.+++. .|+.+ .. .+|||+.|++.+||+|..+
T Consensus 133 v~Gv~~~er~~~a~~~l~~VgL~---------------------~~~~~yp~--eLSGGMqQRVGLARAla~~------- 182 (386)
T COG4175 133 VQGVPKAEREERALEALELVGLE---------------------GYADKYPN--ELSGGMQQRVGLARALAND------- 182 (386)
T ss_pred ecCCCHHHHHHHHHHHHHHcCch---------------------hhhhcCcc--cccchHHHHHHHHHHHccC-------
Confidence 0000 00011122222222221 12211 22 2579999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhhh
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~~ 571 (604)
|++||+||| +|+|||--+..+++. ..+ .+.++||||||||++||.++.
T Consensus 183 -----~~IlLMDEa-FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 183 -----PDILLMDEA-FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----CCEEEecCc-hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 999999999 999998887777765 333 456899999999999999983
No 236
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.71 E-value=1.5e-17 Score=158.63 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=54.1
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~ 568 (604)
+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ +.+.+.|+|+||||...+.
T Consensus 92 LS~G~~~rv~laral~~~------------p~~lllDEP-t~~LD~~~~~~l~~~--l~~~~~tiiivsh~~~~~~ 152 (166)
T cd03223 92 LSGGEQQRLAFARLLLHK------------PKFVFLDEA-TSALDEESEDRLYQL--LKELGITVISVGHRPSLWK 152 (166)
T ss_pred CCHHHHHHHHHHHHHHcC------------CCEEEEECC-ccccCHHHHHHHHHH--HHHhCCEEEEEeCChhHHh
Confidence 579999999999999665 999999999 999999999999988 5555799999999987654
No 237
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.3e-17 Score=168.68 Aligned_cols=75 Identities=17% Similarity=0.064 Sum_probs=60.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||..++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 156 ~LS~Gq~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~ 221 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIR------------PEVLLLDEP-CSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARC 221 (260)
T ss_pred CCCHHHHHHHHHHHHHHCC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh
Confidence 4679999999999999655 999999999 999999999998888 44443 68999999999988664
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 222 ~d~i~~l~~G~i~~ 235 (260)
T PRK10744 222 SDYTAFMYLGELIE 235 (260)
T ss_pred CCEEEEEECCEEEE
Confidence 2345565544
No 238
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-17 Score=186.46 Aligned_cols=76 Identities=14% Similarity=-0.020 Sum_probs=63.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |+|||+.++..+.++ ..+.+.|.||||||||++++..+
T Consensus 396 ~LSgGq~qrl~la~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~ 462 (501)
T PRK11288 396 NLSGGNQQKAILGRWLSED------------MKVILLDEP-TRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGV 462 (501)
T ss_pred cCCHHHHHHHHHHHHHccC------------CCEEEEcCC-CCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhh
Confidence 4679999999999999555 999999999 999999999999888 56667799999999999999776
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 463 ~d~i~~l~~g~i~~ 476 (501)
T PRK11288 463 ADRIVVMREGRIAG 476 (501)
T ss_pred CCEEEEEECCEEEE
Confidence 2444555444
No 239
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.71 E-value=2.3e-17 Score=188.79 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-++||+|+|||||||||++|+|..+++.|.+.. +..+...+ +.+.+...++.. .....+..+..... ....
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y------~~q~~~~l~~~~-tv~e~l~~~~~~~~-~~~~ 416 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAY------FDQHRAELDPEK-TVMDNLAEGKQEVM-VNGR 416 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEE------EeCcccccCCCC-CHHHHHHhhccccc-ccch
Confidence 469999999999999999999999988887643 22221111 112111112211 11111111100000 0000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. ... .....++|||+.++..+|++++.. |++||
T Consensus 417 ~~~~~~~l~~~~l~~-------------------~~~--~~~~~~LSgGekqRl~la~al~~~------------p~lLl 463 (635)
T PRK11147 417 PRHVLGYLQDFLFHP-------------------KRA--MTPVKALSGGERNRLLLARLFLKP------------SNLLI 463 (635)
T ss_pred HHHHHHHHHhcCCCH-------------------HHH--hChhhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 111222222221100 001 112234679999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |+|||+.++..|.++ +..+++|||+||||+.++..+
T Consensus 464 LDEP-t~~LD~~~~~~l~~~--l~~~~~tvi~vSHd~~~~~~~ 503 (635)
T PRK11147 464 LDEP-TNDLDVETLELLEEL--LDSYQGTVLLVSHDRQFVDNT 503 (635)
T ss_pred EcCC-CCCCCHHHHHHHHHH--HHhCCCeEEEEECCHHHHHHh
Confidence 9999 999999999999998 777778999999999998765
No 240
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.7e-17 Score=168.75 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=60.4
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..
T Consensus 148 ~~LS~G~~qrv~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~ 213 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMK------------PKILLMDEP-TANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAAR 213 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHh
Confidence 34679999999999999555 999999999 999999999999888 44443 6899999999999876
Q ss_pred h-h---hhccCCCcc
Q psy3589 570 V-K---RKHKGEETE 580 (604)
Q Consensus 570 ~-~---~~~~~~~~~ 580 (604)
+ + ...+|....
T Consensus 214 ~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 214 VSDYVAFLYLGKLIE 228 (253)
T ss_pred hCCEEEEEECCEEEE
Confidence 4 2 335555543
No 241
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.9e-17 Score=165.23 Aligned_cols=180 Identities=16% Similarity=0.092 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+..+.... .... .++.+.+.+ ++. .....+..+.. .
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~-~~~--tv~~nl~~~~~---~ 101 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVL-FND--TIGYNIRYGRP---D 101 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChh-hcc--hHHHHHhhcCC---C
Confidence 369999999999999999999999998887754443321110 0011 122222222 121 11111111100 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+....+...+... +. .+...+ ......+|||+.++..+|++++.+ |
T Consensus 102 --~~~~~~~~~~~~~~l~~~~~~l-~~--------~~~~~~--~~~~~~LS~G~~~rl~la~aL~~~------------p 156 (236)
T cd03253 102 --ATDEEVIEAAKAAQIHDKIMRF-PD--------GYDTIV--GERGLKLSGGEKQRVAIARAILKN------------P 156 (236)
T ss_pred --CCHHHHHHHHHHcCcHHHHHhc-cc--------cccchh--hcCCCcCCHHHHHHHHHHHHHhcC------------C
Confidence 0011122222222221111000 00 000000 111234679999999999999555 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
+++||||| |++||+.++..+.++ ..+.+ +.|||||||+.+++..+.+. ++|....
T Consensus 157 ~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~ 215 (236)
T cd03253 157 PILLLDEA-TSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215 (236)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence 99999999 999999999988887 45555 88999999999998665433 4555443
No 242
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.71 E-value=2.9e-17 Score=160.56 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=56.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh-hhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA-EGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~-e~~~ 569 (604)
.+|||+.++..+|++++.+ |+++||||| |++||..++..+.++ ..+.+.+.|||+||||.. ++..
T Consensus 111 ~LS~G~~qrv~laral~~~------------p~illlDEP-~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 177 (194)
T cd03213 111 GLSGGERKRVSIALELVSN------------PSLLFLDEP-TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFE 177 (194)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHH
Confidence 4679999999999999666 999999999 999999999999888 455555899999999996 5554
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 178 ~ 178 (194)
T cd03213 178 L 178 (194)
T ss_pred h
Confidence 3
No 243
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.71 E-value=2.1e-17 Score=153.88 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=55.0
Q ss_pred ccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 494 KTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 494 sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|+|+.++..+|++++.+ |+++||||| +++||..++..+.++ +++.+.|||+|||+.+++..+
T Consensus 72 S~G~~~rv~laral~~~------------p~illlDEP-~~~LD~~~~~~l~~~--l~~~~~til~~th~~~~~~~~ 133 (144)
T cd03221 72 SGGEKMRLALAKLLLEN------------PNLLLLDEP-TNHLDLESIEALEEA--LKEYPGTVILVSHDRYFLDQV 133 (144)
T ss_pred CHHHHHHHHHHHHHhcC------------CCEEEEeCC-ccCCCHHHHHHHHHH--HHHcCCEEEEEECCHHHHHHh
Confidence 58889999999999665 999999999 999999999999988 555568999999999998765
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.71 E-value=1.1e-17 Score=186.44 Aligned_cols=76 Identities=16% Similarity=0.036 Sum_probs=62.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 141 ~LSgG~~qrv~iA~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~ 207 (500)
T TIGR02633 141 DYGGGQQQLVEIAKALNKQ------------ARLLILDEP-SSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAV 207 (500)
T ss_pred hCCHHHHHHHHHHHHHhhC------------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHh
Confidence 4679999999999999665 999999999 999999999999888 55556689999999999998765
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 208 ~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 208 CDTICVIRDGQHVA 221 (500)
T ss_pred CCEEEEEeCCeEee
Confidence 2344555433
No 245
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.71 E-value=3.9e-17 Score=178.66 Aligned_cols=165 Identities=16% Similarity=0.088 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhH-hhccc-cccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQV-LMGSF-PIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~-l~g~~-~i~~l~ 445 (604)
-.+||+|+|||||||||++|+|+.++..|.+...+.... +...+++. +. ......+ +...+ .... .
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---------i~~~~~l~-~~-lTV~EnL~l~~~~~~~~~-~ 118 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---------IAISSGLN-GQ-LTGIENIELKGLMMGLTK-E 118 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---------EEeccccC-CC-CcHHHHHHhhhhhcCCCH-H
Confidence 369999999999999999999999998887644332210 00011111 11 1111111 10000 0000 0
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..++..+++.. .+ .+....+|||+.++..+|++++.+ |++
T Consensus 119 e~~e~i~elLe~lgL~~--------------------~l--d~~~~~LSGGQrQRVaLArAL~~~------------P~L 164 (549)
T PRK13545 119 KIKEIIPEIIEFADIGK--------------------FI--YQPVKTYSSGMKSRLGFAISVHIN------------PDI 164 (549)
T ss_pred HHHHHHHHHHHHcCChh--------------------Hh--hCCcccCCHHHHHHHHHHHHHHhC------------CCE
Confidence 00011112222222111 11 112234679999999999999665 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ ...+.|...
T Consensus 165 LLLDEP-TsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 165 LVIDEA-LSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred EEEECC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999 999999998888887 45555689999999999998764 233455543
No 246
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3e-17 Score=166.84 Aligned_cols=75 Identities=13% Similarity=0.043 Sum_probs=60.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 148 ~LS~G~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~ 213 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATS------------PKIILLDEP-TSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRI 213 (252)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-ccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 44443 68999999999988764
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
. ...+|....
T Consensus 214 ~d~i~~l~~G~i~~ 227 (252)
T PRK14239 214 SDRTGFFLDGDLIE 227 (252)
T ss_pred CCEEEEEECCEEEE
Confidence 3 335555543
No 247
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.3e-17 Score=167.16 Aligned_cols=75 Identities=21% Similarity=0.153 Sum_probs=61.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.+. ..+.. +.|||+||||++++..+
T Consensus 142 ~LS~G~~qrv~laral~~~------------p~lllLDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~ 207 (246)
T PRK14269 142 ALSGGQQQRLCIARALAIK------------PKLLLLDEP-TSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRV 207 (246)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhh
Confidence 4679999999999999655 999999999 999999999999888 44444 88999999999988655
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 208 ~d~i~~l~~G~i~~ 221 (246)
T PRK14269 208 ADYTAFFHLGELIE 221 (246)
T ss_pred CcEEEEEECCEEEE
Confidence 2445565544
No 248
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=1.6e-17 Score=186.59 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=57.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..|.++ ..+.. .|.|||+||||++++..
T Consensus 156 ~LSgGe~qrv~iAraL~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~ 222 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTR------------PELLIADEP-TTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK 222 (529)
T ss_pred ccCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 4679999999999999555 999999999 999999999999888 44543 48999999999999876
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 223 ~ 223 (529)
T PRK15134 223 L 223 (529)
T ss_pred h
Confidence 5
No 249
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.9e-17 Score=187.79 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCc-cCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGL-VFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl-~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-++||+|+|||||||||++|+|...++.|.+..... ....++.+. +.. ..+.. .....+....+ ..
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-~~igy~~Q~------~~~~l~~~~--~~~~~~~~~~~----~~ 405 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-IKLGYFAQH------QLEFLRADE--SPLQHLARLAP----QE 405 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-EEEEEecCc------chhhCCccc--hHHHHHHHhCc----hh
Confidence 479999999999999999999999998887643211 111111111 100 00000 00000110000 00
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..++..+++.. .. ......++|||+.++..+|++++.. |++|
T Consensus 406 ~~~~~~~~L~~~~l~~-------------------~~--~~~~~~~LSgGekqRl~La~~l~~~------------p~lL 452 (638)
T PRK10636 406 LEQKLRDYLGGFGFQG-------------------DK--VTEETRRFSGGEKARLVLALIVWQR------------PNLL 452 (638)
T ss_pred hHHHHHHHHHHcCCCh-------------------hH--hcCchhhCCHHHHHHHHHHHHHhcC------------CCEE
Confidence 0111222222222110 00 0112234679999999999998555 9999
Q ss_pred cccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |+|||+.++..|.++ +.++++||||||||++++..+
T Consensus 453 lLDEP-t~~LD~~~~~~l~~~--L~~~~gtvi~vSHd~~~~~~~ 493 (638)
T PRK10636 453 LLDEP-TNHLDLDMRQALTEA--LIDFEGALVVVSHDRHLLRST 493 (638)
T ss_pred EEcCC-CCCCCHHHHHHHHHH--HHHcCCeEEEEeCCHHHHHHh
Confidence 99999 999999999999999 666677999999999998775
No 250
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.3e-17 Score=159.68 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=55.1
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.+ |+++||||| |++||..++..+.++ ..+.+ +.|||++|||++++..+
T Consensus 97 LS~G~~~rl~la~al~~~------------p~llllDEP-~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~ 161 (171)
T cd03228 97 LSGGQRQRIAIARALLRD------------PPILILDEA-TSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDA 161 (171)
T ss_pred hCHHHHHHHHHHHHHhcC------------CCEEEEECC-CcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhC
Confidence 468999999999999555 999999999 999999999998888 44443 68999999999998654
No 251
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.8e-17 Score=170.33 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=56.4
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.. +.||||||||.+++..
T Consensus 181 ~~LSgGq~qrv~LAraL~~~------------p~lllLDEP-t~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~ 246 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVE------------PEILLLDEP-TSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASR 246 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHH
Confidence 44679999999999999555 999999999 999999999999888 44443 5899999999999876
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 247 ~ 247 (286)
T PRK14275 247 V 247 (286)
T ss_pred h
Confidence 5
No 252
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.71 E-value=2.1e-17 Score=166.51 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=59.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+..+..+.++ ..+. .|.||||+|||++++..+
T Consensus 139 ~LS~G~~qrv~la~al~~~------------p~llllDEP-~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~ 204 (238)
T cd03249 139 QLSGGQKQRIAIARALLRN------------PKILLLDEA-TSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNA 204 (238)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCc-cccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhC
Confidence 4678999999999998555 999999999 999999999999888 4454 688999999999998744
Q ss_pred hhh---ccCCC
Q psy3589 571 KRK---HKGEE 578 (604)
Q Consensus 571 ~~~---~~~~~ 578 (604)
++. .+|..
T Consensus 205 d~v~~l~~G~i 215 (238)
T cd03249 205 DLIAVLQNGQV 215 (238)
T ss_pred CEEEEEECCEE
Confidence 332 44544
No 253
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.3e-17 Score=163.70 Aligned_cols=161 Identities=21% Similarity=0.191 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE----EEecC----CeEEecCCCccCCCC-CChhhhHhhcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT----IFLTD----NIRLCDCPGLVFPSK-VPKPLQVLMGS 438 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~----~~~~~----~~~l~D~pGl~~p~~-~~~~~~~l~g~ 438 (604)
-.++|.|++|+|||||||+|+|+..|+.|.+...++.+.. +++.. ..++++..-+ ||.. +...+ ..|.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL-FpH~tVrgNL--~YG~ 101 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL-FPHYTVRGNL--RYGM 101 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc-ccceEEecch--hhhh
Confidence 4589999999999999999999999999987554433211 11110 1122222221 2211 11111 1111
Q ss_pred cccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 439 FPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 439 ~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
.. .....++.+...+++..++. +.. .++|||+.|+++++|+++..
T Consensus 102 ~~-----~~~~~fd~iv~lLGI~hLL~--------------------R~P--~~LSGGEkQRVAIGRALLt~-------- 146 (352)
T COG4148 102 WK-----SMRAQFDQLVALLGIEHLLD--------------------RYP--GTLSGGEKQRVAIGRALLTA-------- 146 (352)
T ss_pred cc-----cchHhHHHHHHHhCcHHHHh--------------------hCC--CccCcchhhHHHHHHHHhcC--------
Confidence 11 01223444444444443331 122 24679999999999999777
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~~ 571 (604)
|++|+|||| .+.||......+.-+ ..+ .+.+..|++|||.++|+.++.
T Consensus 147 ----P~LLLmDEP-LaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLA 196 (352)
T COG4148 147 ----PELLLMDEP-LASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196 (352)
T ss_pred ----CCeeeecCc-hhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhh
Confidence 999999999 999998888877777 334 456899999999999999884
No 254
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=1.5e-17 Score=169.49 Aligned_cols=66 Identities=17% Similarity=0.058 Sum_probs=56.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.++||+.++..+|++++.+ |+++||||| |++||+..+..+..+ ..+.+.+.|||+||||++++..+
T Consensus 139 ~LS~G~~qrv~laral~~~------------p~illlDEP-ts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ 205 (255)
T cd03236 139 QLSGGELQRVAIAAALARD------------ADFYFFDEP-SSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYL 205 (255)
T ss_pred hCCHHHHHHHHHHHHHHhC------------CCEEEEECC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 4568888999999988665 999999999 999999998888877 45555689999999999998864
No 255
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.1e-17 Score=170.66 Aligned_cols=78 Identities=17% Similarity=0.105 Sum_probs=61.0
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.|++.+|.++ +.+|++||.||| |++||+..+..+.++ ..++ +.|.|+|+||||+..|.++
T Consensus 154 lSGGMrQRV~IAmal------------a~~P~LlIADEP-TTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~ 220 (316)
T COG0444 154 LSGGMRQRVMIAMAL------------ALNPKLLIADEP-TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEI 220 (316)
T ss_pred cCCcHHHHHHHHHHH------------hCCCCEEEeCCC-cchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 456666666666666 556999999999 999999999888888 5554 4799999999999998877
Q ss_pred h----hhccCCCcccCc
Q psy3589 571 K----RKHKGEETEEDE 583 (604)
Q Consensus 571 ~----~~~~~~~~~~~~ 583 (604)
. .-+.|...+...
T Consensus 221 aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 221 ADRVAVMYAGRIVEEGP 237 (316)
T ss_pred cceEEEEECcEEEEeCC
Confidence 3 445666666543
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.70 E-value=9.8e-18 Score=161.55 Aligned_cols=66 Identities=11% Similarity=-0.046 Sum_probs=56.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+. .+.|||++|||.+++...
T Consensus 98 ~LS~G~~qrv~laral~~~------------p~~lllDEP-~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~ 163 (178)
T cd03247 98 RFSGGERQRLALARILLQD------------APIVLLDEP-TVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHM 163 (178)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEECC-cccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhC
Confidence 3579999999999999665 999999999 999999999988888 4444 478999999999998644
Q ss_pred h
Q psy3589 571 K 571 (604)
Q Consensus 571 ~ 571 (604)
.
T Consensus 164 d 164 (178)
T cd03247 164 D 164 (178)
T ss_pred C
Confidence 3
No 257
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.70 E-value=3.4e-17 Score=166.43 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=61.1
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV- 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~- 570 (604)
+|||+.++..+|++++.+ |+++||||| |++||..++..+.++ ..+.+.|.||||||||++++..+
T Consensus 152 LSgG~~qrv~la~al~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~ 218 (252)
T CHL00131 152 FSGGEKKRNEILQMALLD------------SELAILDET-DSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIK 218 (252)
T ss_pred CCHHHHHHHHHHHHHHcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhh
Confidence 579999999999999665 999999999 999999999999888 45555689999999999988763
Q ss_pred -hh---hccCCCcc
Q psy3589 571 -KR---KHKGEETE 580 (604)
Q Consensus 571 -~~---~~~~~~~~ 580 (604)
.+ .++|....
T Consensus 219 ~d~i~~l~~G~i~~ 232 (252)
T CHL00131 219 PDYVHVMQNGKIIK 232 (252)
T ss_pred CCEEEEEeCCEEEE
Confidence 33 24555543
No 258
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.2e-17 Score=168.90 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=56.7
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..
T Consensus 179 ~~LSgGe~qrv~LAraL~~~------------p~lLLLDEP-ts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~ 244 (285)
T PRK14254 179 LDLSGGQQQRLCIARAIAPD------------PEVILMDEP-ASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAAR 244 (285)
T ss_pred ccCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh
Confidence 34679999999999999665 999999999 999999999999888 44444 4799999999999877
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 245 ~ 245 (285)
T PRK14254 245 I 245 (285)
T ss_pred h
Confidence 5
No 259
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=1.7e-17 Score=153.36 Aligned_cols=173 Identities=17% Similarity=0.144 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---c-CCeEEecCCCccCCCCCChhhhHhhcccc--c
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---T-DNIRLCDCPGLVFPSKVPKPLQVLMGSFP--I 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~-~~~~l~D~pGl~~p~~~~~~~~~l~g~~~--i 441 (604)
-.++|+||+|||||||+++++.+..++.|.+...+..+..... . +-.++.++|.++ +..+...+ +|| +
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf-g~tVeDNl-----ifP~~~ 103 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF-GDTVEDNL-----IFPWQI 103 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc-ccchhhcc-----ccchHH
Confidence 4689999999999999999999999999988777766554321 1 112334455443 22211111 011 1
Q ss_pred ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 442 AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 442 ~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.+-+.....+..++.++.+.... +. ...-.+|||+.|+.+++|.|...
T Consensus 104 r~rr~dr~aa~~llar~~l~~~~----------------L~-----k~it~lSGGE~QriAliR~Lq~~----------- 151 (223)
T COG4619 104 RNRRPDRAAALDLLARFALPDSI----------------LT-----KNITELSGGEKQRIALIRNLQFM----------- 151 (223)
T ss_pred hccCCChHHHHHHHHHcCCchhh----------------hc-----chhhhccchHHHHHHHHHHhhcC-----------
Confidence 11111122222333333322111 10 11122579999999999998544
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |+.||+...+.+.++ +-.+..+.+|+.||||.+++.+. ++...|..++
T Consensus 152 -P~ILLLDE~-TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 152 -PKILLLDEI-TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred -CceEEecCc-hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999 999999999988887 23457789999999999995543 4455554443
No 260
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.70 E-value=1.6e-17 Score=166.16 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=56.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.. |+++||||| |++||+.++..+.++ ..+.+ +.||||||||++++..+
T Consensus 150 ~LSgG~~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~ 215 (226)
T cd03248 150 QLSGGQKQRVAIARALIRN------------PQVLILDEA-TSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERA 215 (226)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhC
Confidence 4678999999999999555 999999999 999999999999888 44544 68999999999998654
Q ss_pred h
Q psy3589 571 K 571 (604)
Q Consensus 571 ~ 571 (604)
.
T Consensus 216 d 216 (226)
T cd03248 216 D 216 (226)
T ss_pred C
Confidence 3
No 261
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.70 E-value=1.7e-17 Score=185.43 Aligned_cols=76 Identities=21% Similarity=0.121 Sum_probs=62.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.||||||||++++..+
T Consensus 403 ~LSgG~kqrl~la~al~~~------------p~lLlLDEP-t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~ 469 (510)
T PRK15439 403 TLSGGNQQKVLIAKCLEAS------------PQLLIVDEP-TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQM 469 (510)
T ss_pred cCCcHHHHHHHHHHHHhhC------------CCEEEECCC-CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 4679999999999999655 999999999 999999999999888 55555689999999999999776
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
...++|....
T Consensus 470 ~d~i~~l~~G~i~~ 483 (510)
T PRK15439 470 ADRVLVMHQGEISG 483 (510)
T ss_pred CCEEEEEECCEEEE
Confidence 2345555543
No 262
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.6e-17 Score=166.21 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=60.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.. |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 147 ~LS~G~~qrv~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~ 212 (251)
T PRK14270 147 KLSGGQQQRLCIARTIAVK------------PDVILMDEP-TSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRV 212 (251)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHh
Confidence 4678999999999999555 999999999 999999999999888 44444 58999999999998764
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
.....|....
T Consensus 213 ~d~v~~l~~G~i~~ 226 (251)
T PRK14270 213 SDYTAFFLMGDLIE 226 (251)
T ss_pred cCEEEEEECCeEEE
Confidence 3445566544
No 263
>PRK13409 putative ATPase RIL; Provisional
Probab=99.70 E-value=3.3e-17 Score=185.15 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+||+|||||+++|+|+.+++.|.+... ... .++.+.+.+.+.. .....+..+... .. .
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~~i------~y~~Q~~~~~~~~--tv~e~l~~~~~~---~~-~ 430 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKI------SYKPQYIKPDYDG--TVEDLLRSITDD---LG-S 430 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---eeE------EEecccccCCCCC--cHHHHHHHHhhh---cC-h
Confidence 3699999999999999999999999888766432 111 1122222211111 111111111000 00 0
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. .. .+...++|||+.++..+|++++.+ |++||
T Consensus 431 ~~~~~~~L~~l~l~~--------------------~~--~~~~~~LSGGe~QRvaiAraL~~~------------p~llL 476 (590)
T PRK13409 431 SYYKSEIIKPLQLER--------------------LL--DKNVKDLSGGELQRVAIAACLSRD------------ADLYL 476 (590)
T ss_pred HHHHHHHHHHCCCHH--------------------HH--hCCcccCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 011222333322211 11 122334679999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |+|||+.++..+.++ ..+.. .|.|||+||||++++..+
T Consensus 477 LDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 477 LDEP-SAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred EeCC-ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 9999 999999999999888 44433 489999999999998876
No 264
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.70 E-value=1.7e-17 Score=185.16 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=62.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.||||||||++++..+
T Consensus 403 ~LSgGqkqrv~la~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~ 469 (500)
T TIGR02633 403 RLSGGNQQKAVLAKMLLTN------------PRVLILDEP-TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGL 469 (500)
T ss_pred cCCHHHHHHHHHHHHHhhC------------CCEEEEcCC-CCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 3679999999999999665 999999999 999999999998877 55666789999999999999775
Q ss_pred h----hhccCCCcc
Q psy3589 571 K----RKHKGEETE 580 (604)
Q Consensus 571 ~----~~~~~~~~~ 580 (604)
. ....|....
T Consensus 470 ~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 470 SDRVLVIGEGKLKG 483 (500)
T ss_pred CCEEEEEECCEEEE
Confidence 2 334555544
No 265
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3e-17 Score=166.75 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=60.7
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+. .+.|||+||||+.++.++
T Consensus 146 ~LS~G~~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~ 211 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVS------------PSVLLMDEP-ASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARV 211 (250)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhh
Confidence 4679999999999999555 999999999 999999999999888 4453 378999999999998664
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
...++|....
T Consensus 212 ~d~v~~l~~G~~~~ 225 (250)
T PRK14245 212 SDKTAFFYMGEMVE 225 (250)
T ss_pred CCEEEEEECCEEEE
Confidence 2345555543
No 266
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3e-17 Score=168.63 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=56.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 154 ~LS~G~~qrl~laral~~~------------p~lllLDEP-t~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~ 219 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIE------------PEVILMDEP-CSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRV 219 (269)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 44443 68999999999998776
No 267
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.70 E-value=3.1e-17 Score=183.81 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=57.5
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~ 568 (604)
.++|||+.++..+|++++.+ |++|||||| |++||+.++.++.++ ..+ ++.|.||||||||++++.
T Consensus 167 ~~LSgGq~qrv~iA~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKE------------PFLFLADEP-TGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEeeCC-cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 34679999999999999555 999999999 999999999999887 445 345899999999999987
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 234 ~~ 235 (520)
T TIGR03269 234 DL 235 (520)
T ss_pred Hh
Confidence 65
No 268
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.9e-17 Score=161.57 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=54.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
.+|||+.++..+|++++.. |+++||||| |++||+.++..+.++ ..+.+.+.|||+|||+.++
T Consensus 108 ~LSgGe~qrv~la~al~~~------------p~vlllDEP-~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAK------------PSILFLDEP-TSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred cCCHHHhHHHHHHHHHhcC------------CcEEEEeCC-CcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 4679999999999999555 999999999 999999999999888 4555568999999999873
No 269
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.9e-17 Score=168.02 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=57.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~ 568 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.+...+.++ ..++ ..+.|||+||||+.++.
T Consensus 149 ~~LSgGq~qrv~laral~~~------------p~vllLDEP-~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~ 215 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVK------------PKVLLMDEP-CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVS 215 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 34679999999999999655 999999999 999999999998887 4443 35899999999999987
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 216 ~~ 217 (261)
T PRK14258 216 RL 217 (261)
T ss_pred Hh
Confidence 66
No 270
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.7e-17 Score=183.56 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=55.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++. +|++|||||| |++||+.++.+|.++ +.+.++||||||||++++..+
T Consensus 155 ~LSgGq~qrv~lA~aL~~------------~p~lLlLDEP-t~~LD~~~~~~l~~~--l~~~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 155 EVAPGWKLRVLLAQALFS------------NPDILLLDEP-TNNLDINTIRWLEDV--LNERNSTMIIISHDRHFLNSV 218 (530)
T ss_pred hcCHHHHHHHHHHHHHhc------------CCCEEEEcCC-CcccCHHHHHHHHHH--HHhCCCeEEEEeCCHHHHHhh
Confidence 456888888888888854 4999999999 999999999999999 666789999999999998765
No 271
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.8e-17 Score=168.52 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=60.5
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||..++..|.++ ..+.+ +.||||||||+.++..+
T Consensus 163 ~LSgGq~qrl~LAral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~ 228 (276)
T PRK14271 163 RLSGGQQQLLCLARTLAVN------------PEVLLLDEP-TSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARI 228 (276)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 4679999999999999555 999999999 999999999998887 44444 58999999999998765
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 229 ~dri~~l~~G~i~~ 242 (276)
T PRK14271 229 SDRAALFFDGRLVE 242 (276)
T ss_pred CCEEEEEECCEEEE
Confidence 2335555543
No 272
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.70 E-value=3.2e-16 Score=167.26 Aligned_cols=157 Identities=28% Similarity=0.401 Sum_probs=117.5
Q ss_pred hHHHHHH-HHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH----hHHHHHH-HHHhhC-
Q psy3589 184 NLETWRQ-LWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP----LVLAWKH-YFQSKF- 256 (604)
Q Consensus 184 Nle~wRQ-lwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~----~~~~w~~-yf~~~~- 256 (604)
+-+-++. +-.....+|+||+|+|+.++..+..+.|.+++. ++|+|+|+||+||++.. ....|.. +++...
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~---~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG---GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC---CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 3343444 444557889999999999988888888888764 68999999999998653 4556654 444332
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchh
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVE 336 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~ 336 (604)
+...++++||+ .+.|+.+|++.+.++.
T Consensus 126 ~~~~i~~vSAk----------------------------~g~gv~eL~~~l~~~~------------------------- 152 (360)
T TIGR03597 126 KPVDIILVSAK----------------------------KGNGIDELLDKIKKAR------------------------- 152 (360)
T ss_pred CcCcEEEecCC----------------------------CCCCHHHHHHHHHHHh-------------------------
Confidence 11247778886 4567788877664310
Q ss_pred hhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCC-----CccccCcCcccceeEEEEec
Q psy3589 337 EEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRK-----VVSVSRTPGHTKHFQTIFLT 411 (604)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~-----~~~~g~i~g~t~~~q~~~~~ 411 (604)
.+ ..+++||.+|||||||||+|++.. .+.++..||+|...+.+.+.
T Consensus 153 ----------------------------~~-~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~ 203 (360)
T TIGR03597 153 ----------------------------NK-KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD 203 (360)
T ss_pred ----------------------------CC-CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC
Confidence 01 479999999999999999999864 35788899999999888887
Q ss_pred CCeEEecCCCccCC
Q psy3589 412 DNIRLCDCPGLVFP 425 (604)
Q Consensus 412 ~~~~l~D~pGl~~p 425 (604)
....++||||+..+
T Consensus 204 ~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 204 DGHSLYDTPGIINS 217 (360)
T ss_pred CCCEEEECCCCCCh
Confidence 78899999999754
No 273
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.3e-17 Score=182.37 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+||||||||+++|+|+..+..|.+...+.. .. .++.+.+...++........ +.. +. .....
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~-~i------~~~~q~~~~~~~~~~t~~~~-~~~-~~--~~~~~ 414 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA-NI------GYYAQDHAYDFENDLTLFDW-MSQ-WR--QEGDD 414 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce-EE------EEEcccccccCCCCCcHHHH-HHH-hc--cCCcc
Confidence 4699999999999999999999999888876433211 01 12222222111111111111 100 00 00001
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. .. ..+...++|||+.++..+|++++.. |++||
T Consensus 415 ~~~~~~~l~~~~l~~-------------------~~--~~~~~~~LSgGq~qrv~la~al~~~------------p~lll 461 (530)
T PRK15064 415 EQAVRGTLGRLLFSQ-------------------DD--IKKSVKVLSGGEKGRMLFGKLMMQK------------PNVLV 461 (530)
T ss_pred HHHHHHHHHHcCCCh-------------------hH--hcCcccccCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 112233333332200 00 1122334679999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 528 KQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|||| |++||+.++..+.++ +.+.++|||+||||++++..+ ...++|...
T Consensus 462 LDEP-t~~LD~~~~~~l~~~--l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 462 MDEP-TNHMDMESIESLNMA--LEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred EcCC-CCCCCHHHHHHHHHH--HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999 999999999999998 666678999999999998765 234455543
No 274
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=2.7e-17 Score=162.29 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||+|||||+++|+|+..+..|.+...+..+.... ....+ ++.+.|.+ ++. ..... +. .+. .
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-~~~--tv~~~-l~-~~~--~ 107 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTL-FSG--TIRSN-LD-PFD--E 107 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcc-cCc--cHHHH-hc-ccC--C
Confidence 369999999999999999999999998887654433221110 01112 22233322 111 11000 00 000 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
. .... ..+.++ .......+|||+.++..+|++++.+ |
T Consensus 108 ~--~~~~--------------------------~~~~l~---~~~~~~~LS~G~~qrv~laral~~~------------p 144 (207)
T cd03369 108 Y--SDEE--------------------------IYGALR---VSEGGLNLSQGQRQLLCLARALLKR------------P 144 (207)
T ss_pred C--CHHH--------------------------HHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhC------------C
Confidence 0 0000 011111 1222334679999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+++||||| |++||+.++..+.++ ..+. .+.|+|++||+.+++...+
T Consensus 145 ~llllDEP-~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d 191 (207)
T cd03369 145 RVLVLDEA-TASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYD 191 (207)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCC
Confidence 99999999 999999999998888 4443 3889999999999986544
No 275
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=3e-17 Score=183.29 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=63.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 405 ~LSgG~kqrv~lA~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~ 471 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLN------------PKILILDEP-TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGL 471 (506)
T ss_pred cCCHHHHHHHHHHHHHhhC------------CCEEEEcCC-CCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 4679999999999999665 999999999 999999999998888 55656689999999999998765
Q ss_pred ----hhhccCCCccc
Q psy3589 571 ----KRKHKGEETEE 581 (604)
Q Consensus 571 ----~~~~~~~~~~~ 581 (604)
..-.+|.....
T Consensus 472 ~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 472 SDRVLVMHEGKLKGD 486 (506)
T ss_pred CCEEEEEECCEEEEE
Confidence 34456665543
No 276
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.2e-17 Score=167.40 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=56.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 155 ~LS~Gq~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~ 220 (259)
T PRK14274 155 SLSGGQQQRLCIARALATN------------PDVLLMDEP-TSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARV 220 (259)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 45544 78999999999998765
No 277
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.1e-17 Score=165.61 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=60.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+|||+++++..+
T Consensus 145 ~LS~G~~qrv~laral~~~------------p~llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~ 210 (249)
T PRK14253 145 GLSGGQQQRLCIARTIAME------------PDVILMDEP-TSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRI 210 (249)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 44544 58999999999998775
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 211 ~d~i~~l~~G~i~~ 224 (249)
T PRK14253 211 SDRTAFFLMGELVE 224 (249)
T ss_pred CCEEEEEECCEEEE
Confidence 2335555543
No 278
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.2e-17 Score=188.50 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=57.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~ 569 (604)
++|||+.++..+|++++.+ |++|||||| |++||+..+..+.++ ..+. +.|+|||+||||++++..
T Consensus 168 ~LSgGq~QRv~iA~AL~~~------------P~lLllDEP-t~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~ 234 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCR------------PAVLIADEP-TTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAE 234 (623)
T ss_pred cCCHHHHHHHHHHHHHhCC------------CCEEEEeCC-CCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 4679999999999999555 999999999 999999999988888 5554 358999999999999876
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 235 ~ 235 (623)
T PRK10261 235 I 235 (623)
T ss_pred h
Confidence 5
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.69 E-value=2.6e-17 Score=183.63 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=63.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+...|.||||||||++++..+
T Consensus 395 ~LSgGekqrv~lA~al~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~ 461 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTR------------PKVLILDEP-TRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGM 461 (501)
T ss_pred hCCHHHHHHHHHHHHHhhC------------CCEEEEcCC-CCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh
Confidence 4679999999999999655 999999999 999999999999888 55555689999999999998765
Q ss_pred ----hhhccCCCccc
Q psy3589 571 ----KRKHKGEETEE 581 (604)
Q Consensus 571 ----~~~~~~~~~~~ 581 (604)
....+|.....
T Consensus 462 ~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 462 SDRILVMHEGRISGE 476 (501)
T ss_pred CCEEEEEECCEEEEE
Confidence 34456665443
No 280
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.69 E-value=4.1e-17 Score=186.76 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=60.4
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.++|||+.++..+|++++.+ |++|||||| |||||+.++.+|.++ +...++||||||||+.++..+
T Consensus 155 ~~LSgGekqRv~LAraL~~~------------P~lLLLDEP-t~~LD~~~~~~L~~~--L~~~~~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSN------------PDVLLLDEP-TNHLDIETIEWLEGF--LKTFQGSIIFISHDRSFIRNM 219 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CCccCHHHHHHHHHH--HHhCCCEEEEEeCCHHHHHHh
Confidence 45678888888888888555 999999999 999999999999999 766678999999999998765
Q ss_pred ----hhhccCCC
Q psy3589 571 ----KRKHKGEE 578 (604)
Q Consensus 571 ----~~~~~~~~ 578 (604)
...++|..
T Consensus 220 ~d~i~~L~~G~i 231 (635)
T PRK11147 220 ATRIVDLDRGKL 231 (635)
T ss_pred cCeEEEEECCEE
Confidence 23445544
No 281
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.2e-17 Score=167.75 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=60.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 167 ~LSgGe~qrv~laraL~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~ 232 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIE------------PDVILMDEP-TSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARI 232 (271)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHh
Confidence 3579999999999999555 999999999 999999999999888 44544 68999999999998764
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
+ ..++|....
T Consensus 233 ~d~i~~l~~G~i~~ 246 (271)
T PRK14238 233 SDKTAFFLNGYVNE 246 (271)
T ss_pred CCEEEEEECCEEEE
Confidence 2 335565544
No 282
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=6.6e-17 Score=164.53 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=60.8
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||++|||+.++..
T Consensus 148 ~~LS~G~~qrv~laral~~~------------p~lllLDEP-~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~ 213 (253)
T PRK14261 148 LSLSGGQQQRLCIARTLAVN------------PEVILMDEP-CSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAAR 213 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHh
Confidence 34679999999999999555 999999999 999999999999888 44444 5899999999999876
Q ss_pred h-h---hhccCCCcc
Q psy3589 570 V-K---RKHKGEETE 580 (604)
Q Consensus 570 ~-~---~~~~~~~~~ 580 (604)
+ . ...+|....
T Consensus 214 ~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 214 VSDYTGFMYLGKLIE 228 (253)
T ss_pred hCCEEEEEECCEEEE
Confidence 4 2 335555443
No 283
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3.2e-17 Score=182.44 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=62.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.+ |++|||||| |+|||+.++..+.++ ..+.+.|.||||||||++++..+
T Consensus 391 ~LSgGq~qrv~la~al~~~------------p~illLDEP-t~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~ 457 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQ------------PEILMLDEP-TRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI 457 (491)
T ss_pred cCCcHHHHHHHHHHHHhcC------------CCEEEEcCC-CcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhh
Confidence 4679999999999999555 999999999 999999999999888 55566799999999999999765
Q ss_pred ----hhhccCCCc
Q psy3589 571 ----KRKHKGEET 579 (604)
Q Consensus 571 ----~~~~~~~~~ 579 (604)
...+.|...
T Consensus 458 ~d~v~~l~~g~i~ 470 (491)
T PRK10982 458 TDRILVMSNGLVA 470 (491)
T ss_pred CCEEEEEECCEEE
Confidence 344455554
No 284
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.69 E-value=6e-17 Score=161.31 Aligned_cols=169 Identities=19% Similarity=0.150 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
.++|+|+||||||||+++|+|...+..|.+...+..+.... ....+ ++.+.+.+ ++.. ... .+. .+ ..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l-~~~t--v~e-nl~-~~--~~- 103 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVL-FSGT--IRS-NLD-PF--GE- 103 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcc-ccch--HHH-HhC-cC--CC-
Confidence 59999999999999999999999998887754443321100 01112 22233322 1211 111 111 00 00
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+...+..+++...+... +. .+.... ......+|||+.++..+|++++.+ |+
T Consensus 104 -~~~~~~~~~~~~~~l~~~~~~l-~~--------~l~~~~--~~~~~~LS~G~~qr~~laral~~~------------p~ 159 (221)
T cd03244 104 -YSDEELWQALERVGLKEFVESL-PG--------GLDTVV--EEGGENLSVGQRQLLCLARALLRK------------SK 159 (221)
T ss_pred -CCHHHHHHHHHHhCcHHHHHhc-cc--------cccccc--ccCCCcCCHHHHHHHHHHHHHhcC------------CC
Confidence 0112222333333332211000 00 000000 112234679999999999999655 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
++||||| |++||+.++..+.++ ..+.+ +.|||++||+.+++..+.
T Consensus 160 llllDEP-~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d 205 (221)
T cd03244 160 ILVLDEA-TASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSD 205 (221)
T ss_pred EEEEeCc-cccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCC
Confidence 9999999 999999999999888 44433 689999999999987654
No 285
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.69 E-value=7.2e-17 Score=158.85 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+ . -.++.+.|.+. +. .....+.... . . .
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~------i~~~~q~~~l~-~~--t~~enl~~~~-~---~--~ 93 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---S------IAYVSQEPWIQ-NG--TIRENILFGK-P---F--D 93 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---E------EEEEecCchhc-cC--cHHHHhccCC-C---c--C
Confidence 36999999999999999999999999888764333 1 12233333332 21 1111111110 0 0 0
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+......+.+...+... |.. +.... ......+|+|+.++..+|++++.+ |+++|
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~-~~~--------~~~~~--~~~~~~lS~G~~qrv~laral~~~------------p~lll 150 (204)
T cd03250 94 EERYEKVIKACALEPDLEIL-PDG--------DLTEI--GEKGINLSGGQKQRISLARAVYSD------------ADIYL 150 (204)
T ss_pred HHHHHHHHHHcCcHHHHHhc-cCc--------cccee--cCCCCcCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 11122222222221111100 000 00000 112234679999999999999655 99999
Q ss_pred ccCCCcCCCCHHHHHHHHH-h-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQA-R-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~-~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
|||| |++||+.....+.+ + ..+...+.|||+|||+..++....
T Consensus 151 lDEP-~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d 195 (204)
T cd03250 151 LDDP-LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHAD 195 (204)
T ss_pred EeCc-cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCC
Confidence 9999 99999999887766 3 334445899999999999887643
No 286
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=7.1e-17 Score=165.17 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=56.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+. .+.|||+||||++++..+
T Consensus 149 ~LS~G~~qrv~laral~~~------------p~llllDEP-tsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~ 214 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATE------------PEVLLLDEP-CSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRV 214 (261)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHh
Confidence 4679999999999999555 999999999 999999999999888 4454 368999999999998765
No 287
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=6e-17 Score=165.34 Aligned_cols=74 Identities=23% Similarity=0.153 Sum_probs=59.2
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV- 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~- 570 (604)
+|+|+.++..+|++++.+ |+++||||| |++||..+...+.++ ..+.+ +.|||+|||++.++..+
T Consensus 154 LS~G~~qrl~laral~~~------------P~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~ 219 (257)
T PRK14246 154 LSGGQQQRLTIARALALK------------PKVLLMDEP-TSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVA 219 (257)
T ss_pred CCHHHHHHHHHHHHHHcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhC
Confidence 568999999999998555 999999999 999999999999888 44443 68999999999998654
Q ss_pred h---hhccCCCcc
Q psy3589 571 K---RKHKGEETE 580 (604)
Q Consensus 571 ~---~~~~~~~~~ 580 (604)
. ...+|....
T Consensus 220 d~v~~l~~g~i~~ 232 (257)
T PRK14246 220 DYVAFLYNGELVE 232 (257)
T ss_pred CEEEEEECCEEEE
Confidence 2 335555443
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=4.7e-17 Score=182.74 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=62.5
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ .|.||||||||++++..
T Consensus 425 ~LSgG~~qrv~la~al~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~ 491 (529)
T PRK15134 425 EFSGGQRQRIAIARALILK------------PSLIILDEP-TSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRA 491 (529)
T ss_pred cCCHHHHHHHHHHHHHhCC------------CCEEEeeCC-ccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH
Confidence 4679999999999999555 999999999 999999999999888 44544 48999999999999876
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ...++|....
T Consensus 492 ~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 492 LCHQVIVLRQGEVVE 506 (529)
T ss_pred hcCeEEEEECCEEEE
Confidence 5 3445666543
No 289
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=8.7e-17 Score=165.66 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=56.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||+.++..+
T Consensus 161 ~LSgGq~qrv~LAraL~~~------------p~lllLDEP-t~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~ 226 (274)
T PRK14265 161 ALSGGQQQRLCIARAIAMK------------PDVLLMDEP-CSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRV 226 (274)
T ss_pred cCCHHHHHHHHHHHHHhhC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 3679999999999999666 999999999 999999999999888 44443 68999999999999766
No 290
>PRK13409 putative ATPase RIL; Provisional
Probab=99.69 E-value=3e-17 Score=185.47 Aligned_cols=66 Identities=18% Similarity=0.094 Sum_probs=57.8
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
-.+|||+.++..+|++++.+ |++|||||| |++||+..+.++.++ ..+.+ |.|||+||||++++..
T Consensus 211 ~~LSgGe~qrv~ia~al~~~------------p~lllLDEP-ts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 211 SELSGGELQRVAIAAALLRD------------ADFYFFDEP-TSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDY 276 (590)
T ss_pred hhCCHHHHHHHHHHHHHhcC------------CCEEEEECC-CCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 34679999999999998555 999999999 999999999999988 55666 9999999999999877
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 277 ~ 277 (590)
T PRK13409 277 L 277 (590)
T ss_pred h
Confidence 6
No 291
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.8e-17 Score=164.56 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=61.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+|||++.++..
T Consensus 145 ~~LS~Gq~qrv~laral~~~------------p~llllDEP-~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVS------------PEVILMDEP-CSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATR 210 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHh
Confidence 34679999999999999655 999999999 999999999999888 44443 7899999999999987
Q ss_pred hhh----hccCCCc
Q psy3589 570 VKR----KHKGEET 579 (604)
Q Consensus 570 ~~~----~~~~~~~ 579 (604)
+.. ...|...
T Consensus 211 ~~~~i~~l~~G~i~ 224 (250)
T PRK14266 211 VSKYTSFFLNGEII 224 (250)
T ss_pred hcCEEEEEECCeEE
Confidence 642 3455544
No 292
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.7e-17 Score=164.78 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=60.5
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.+...+.++ ..+.+ +.|||+||||+.++..+
T Consensus 149 ~LS~Gq~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~ 214 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVK------------PTMLLMDEP-CSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKV 214 (251)
T ss_pred hCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhh
Confidence 4678999999999999555 999999999 999999999998888 44543 79999999999998764
Q ss_pred ----hhhccCCCcc
Q psy3589 571 ----KRKHKGEETE 580 (604)
Q Consensus 571 ----~~~~~~~~~~ 580 (604)
....+|....
T Consensus 215 ~d~i~~l~~G~i~~ 228 (251)
T PRK14244 215 SDRVAFFQSGRIVE 228 (251)
T ss_pred cCEEEEEECCEEEE
Confidence 2335565543
No 293
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=6.9e-17 Score=164.20 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=60.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.+...+.++ ..+.+ +.|||+||||++++..+
T Consensus 148 ~LS~Gq~qrv~laral~~~------------p~llllDEP-t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~ 213 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVK------------PDVILLDEP-TSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRI 213 (252)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHh
Confidence 4579999999999999555 999999999 999999999999887 44443 58999999999998765
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
. ....|....
T Consensus 214 ~d~i~~l~~G~i~~ 227 (252)
T PRK14255 214 SDKTAFFLTGNLIE 227 (252)
T ss_pred CCEEEEEECCEEEE
Confidence 2 234555443
No 294
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.68 E-value=8.4e-17 Score=181.54 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+|||||||||++|+|+.++..|.+... ..... .++.+.+...++.. .....+..+. ........
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i------~~v~q~~~~~~~~~-tv~e~l~~~~-~~~~~~~~ 419 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKL------AYVDQSRDALDPNK-TVWEEISGGL-DIIQLGKR 419 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEE------EEEeCCccccCCCC-cHHHHHHhhc-cccccCcc
Confidence 4699999999999999999999999888876431 11111 12222221112211 1111111111 00000000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. . ......-++|||+.++..+|++++.+ |++||
T Consensus 420 ~~~~~~~l~~~~l~~--------------------~-~~~~~~~~LSgGe~qrv~la~al~~~------------p~lll 466 (552)
T TIGR03719 420 EVPSRAYVGRFNFKG--------------------S-DQQKKVGQLSGGERNRVHLAKTLKSG------------GNVLL 466 (552)
T ss_pred hHHHHHHHHhCCCCh--------------------h-HhcCchhhCCHHHHHHHHHHHHHhhC------------CCEEE
Confidence 011122233322210 0 00112234679999999999999655 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |+|||+.++..|.++ +.+.++||||||||++++..+
T Consensus 467 LDEP-t~~LD~~~~~~l~~~--l~~~~~~viivsHd~~~~~~~ 506 (552)
T TIGR03719 467 LDEP-TNDLDVETLRALEEA--LLEFAGCAVVISHDRWFLDRI 506 (552)
T ss_pred EeCC-CCCCCHHHHHHHHHH--HHHCCCeEEEEeCCHHHHHHh
Confidence 9999 999999999999998 655556999999999998775
No 295
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=6.1e-17 Score=166.60 Aligned_cols=76 Identities=20% Similarity=0.132 Sum_probs=61.5
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..
T Consensus 167 ~~LS~Gq~qrv~laral~~~------------p~lllLDEP-t~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~ 232 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIE------------PEVLLLDEP-TSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAAR 232 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHh
Confidence 34679999999999999555 999999999 999999999999888 44544 6899999999999876
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ....+|....
T Consensus 233 ~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 233 VSDYTAFMYMGKLVE 247 (272)
T ss_pred hCCEEEEEECCEEEe
Confidence 4 2335666543
No 296
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=5.9e-17 Score=166.28 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=60.8
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.. |+++||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..
T Consensus 162 ~~LS~G~~qrl~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~ 227 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVK------------PDILLMDEP-ASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAAR 227 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHH
Confidence 34679999999999999555 999999999 999999999998887 44543 6899999999999866
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ .....|....
T Consensus 228 ~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 228 ASDYTAFFYLGDLIE 242 (267)
T ss_pred hcCEEEEEECCEEEE
Confidence 4 2445555544
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=5.2e-17 Score=182.03 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=57.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+. +.|.||||||||++++..
T Consensus 427 ~LSgGq~qrv~laral~~~------------p~lLllDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 493 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKE------------PRIVILDEP-TGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD 493 (520)
T ss_pred hCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence 4679999999999999555 999999999 999999999999888 4443 458999999999999877
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 494 ~ 494 (520)
T TIGR03269 494 V 494 (520)
T ss_pred h
Confidence 5
No 298
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=7.3e-17 Score=164.83 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=56.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.+...+.++ ..+.+ +.|||+||||++++..+
T Consensus 150 ~LS~G~~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~ 215 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIK------------PKVLLMDEP-CSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRV 215 (259)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 4679999999999999655 999999999 999999999999888 44444 58999999999998776
No 299
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1e-16 Score=164.29 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=56.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+ +.|||+||||++++..+
T Consensus 151 ~LSgGq~qrv~laral~~~------------p~lllLDEP-t~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~ 216 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQ------------PEVILMDEP-CSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARV 216 (264)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHh
Confidence 4679999999999999665 999999999 999999999999888 44444 58999999999998776
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.68 E-value=9.6e-17 Score=181.18 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+||||||||+++|+|+.+++.|.+... ..... .++.+.+...++.. .....+..+. ........
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i------~~v~q~~~~~~~~~-tv~e~l~~~~-~~~~~~~~ 421 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKL------AYVDQSRDALDPNK-TVWEEISGGL-DIIKVGNR 421 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEE------EEEeCchhhcCCCC-CHHHHHHhhc-cccccccc
Confidence 3699999999999999999999999888876431 11111 12222221111211 1111111110 00000000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. ....+...++|||+.++..+|++++.. |++||
T Consensus 422 ~~~~~~~l~~~~l~~---------------------~~~~~~~~~LSgG~~qrv~la~al~~~------------p~lll 468 (556)
T PRK11819 422 EIPSRAYVGRFNFKG---------------------GDQQKKVGVLSGGERNRLHLAKTLKQG------------GNVLL 468 (556)
T ss_pred HHHHHHHHHhCCCCh---------------------hHhcCchhhCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 011112222222110 001112234679999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |+|||+.++..|.++ +.+.++|||+||||++++..+
T Consensus 469 LDEP-t~~LD~~~~~~l~~~--l~~~~~tvi~vtHd~~~~~~~ 508 (556)
T PRK11819 469 LDEP-TNDLDVETLRALEEA--LLEFPGCAVVISHDRWFLDRI 508 (556)
T ss_pred EcCC-CCCCCHHHHHHHHHH--HHhCCCeEEEEECCHHHHHHh
Confidence 9999 999999999999998 555556999999999998765
No 301
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=6.9e-17 Score=148.28 Aligned_cols=182 Identities=19% Similarity=0.136 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC---CeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-++.++||+|+||||||+.|.-+..+.+|....-..++....... ...+....|++|+.+ ++
T Consensus 29 etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy---------------~l 93 (242)
T COG4161 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY---------------NL 93 (242)
T ss_pred CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh---------------cc
Confidence 478899999999999999999888887776543332221110000 001111223333221 22
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHh----cchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQK----RSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~----rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
-..+..+..+.+.- . ..+ ..+.......+.+++..+... +--+.++||+.+++++||++ +
T Consensus 94 wphltv~enlieap-~-kv~--gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaral------------m 157 (242)
T COG4161 94 WPHLTVQENLIEAP-C-RVL--GLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL------------M 157 (242)
T ss_pred CchhHHHHHHHhhh-H-HHh--CCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHH------------h
Confidence 22223333322210 0 000 001111112233333332111 22345789999999999999 4
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh----hhccCCCccc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK----RKHKGEETEE 581 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~ 581 (604)
..|++|++||| |+.||++....+..+ +++...|.|-++|||..+.+..+. --.+|.+.+-
T Consensus 158 mkpqvllfdep-taaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 158 MEPQVLLFDEP-TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred cCCcEEeecCc-ccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 55999999999 999999998888888 778889999999999999998774 2235555543
No 302
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=4.2e-17 Score=156.56 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=106.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCe----EEecCCCcc-CCCCCChhhhHhhccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNI----RLCDCPGLV-FPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~----~l~D~pGl~-~p~~~~~~~~~l~g~~~i~~ 443 (604)
-|.+||.||+|||||+|+|+|...++.|.+...+.++......... .+++.|-.. ++.. ..+..+..
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l-TieENl~l------- 105 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL-TIEENLAL------- 105 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc-cHHHHHHH-------
Confidence 3669999999999999999999999999887666554433221111 111111100 1111 01111000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCC---cccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDD---DEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~---~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
+..--++.++...+....... ........+...+....|++ ||||.|...++.+. +
T Consensus 106 -------a~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglL--SGGQRQalsL~MAt------------l 164 (263)
T COG1101 106 -------AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLL--SGGQRQALSLLMAT------------L 164 (263)
T ss_pred -------HHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhc--cchHHHHHHHHHHh------------c
Confidence 000000000000000000000 00000122333344445555 37777766666665 6
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcccC
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETEED 582 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~~ 582 (604)
.+|++|+|||- |++|||.....+.++ ..+.+.+.|.+||||+++.|..+ +.-|.|.+.=+-
T Consensus 165 ~~pkiLLLDEH-TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 165 HPPKILLLDEH-TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred CCCcEEEecch-hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 67999999999 999999999888887 45677899999999999999877 577888877653
No 303
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.68 E-value=5.7e-17 Score=159.26 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
+|||+.++..+|++++.+ |+++||||| |++||..+...+.++ ..+.+.+.||||+||+++++..
T Consensus 105 LS~G~~qrv~laral~~~------------p~illlDEP-t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 105 FSGGEKKRNEILQLLLLE------------PDLAILDEP-DSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred CCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 569999999999999555 999999999 999999999998887 4455558899999999999875
No 304
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=9.8e-17 Score=181.09 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=55.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++. +|++|||||| |++||+.++.++.++ +.+.+.|||+||||++++..+
T Consensus 163 ~LSgGqkqrv~la~al~~------------~p~vlLLDEP-t~~LD~~~~~~l~~~--L~~~~~tviiisHd~~~~~~~ 226 (556)
T PRK11819 163 KLSGGERRRVALCRLLLE------------KPDMLLLDEP-TNHLDAESVAWLEQF--LHDYPGTVVAVTHDRYFLDNV 226 (556)
T ss_pred hcCHHHHHHHHHHHHHhC------------CCCEEEEcCC-CCcCChHHHHHHHHH--HHhCCCeEEEEeCCHHHHHhh
Confidence 466888888888888844 4999999999 999999999999998 666667999999999998765
No 305
>PLN03073 ABC transporter F family; Provisional
Probab=99.67 E-value=2.1e-16 Score=181.99 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChh-hhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKP-LQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~-~~~l~g~~~i~~l~~ 446 (604)
-++||+|+|||||||||++|+|+.++..|.+..... ....+ +.+.+ ......... ...+...++ . .
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-~~igy------v~Q~~--~~~l~~~~~~~~~~~~~~~--~--~ 602 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-VRMAV------FSQHH--VDGLDLSSNPLLYMMRCFP--G--V 602 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-eeEEE------Eeccc--cccCCcchhHHHHHHHhcC--C--C
Confidence 379999999999999999999999998887643221 11111 11111 000000000 000100010 0 0
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..++..+++.. .. ..+....+|||+.++..+|++++.+ |++|
T Consensus 603 ~~~~i~~~L~~~gl~~--------------------~~-~~~~~~~LSgGqkqRvaLAraL~~~------------p~lL 649 (718)
T PLN03073 603 PEQKLRAHLGSFGVTG--------------------NL-ALQPMYTLSGGQKSRVAFAKITFKK------------PHIL 649 (718)
T ss_pred CHHHHHHHHHHCCCCh--------------------HH-hcCCccccCHHHHHHHHHHHHHhcC------------CCEE
Confidence 1122233333332210 00 0112234679999999999999555 9999
Q ss_pred cccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |+|||+.++..|.+. +..+++||||||||+.++..+
T Consensus 650 LLDEP-T~~LD~~s~~~l~~~--L~~~~gtvIivSHd~~~i~~~ 690 (718)
T PLN03073 650 LLDEP-SNHLDLDAVEALIQG--LVLFQGGVLMVSHDEHLISGS 690 (718)
T ss_pred EEcCC-CCCCCHHHHHHHHHH--HHHcCCEEEEEECCHHHHHHh
Confidence 99999 999999999988887 555556999999999998865
No 306
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.4e-16 Score=163.28 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=55.7
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++.. |+++||||| |++||+.++..+.++ ..+.. +.|||+||||++++..+
T Consensus 161 ~LS~G~~qrv~laral~~~------------p~llllDEP-t~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~ 226 (265)
T PRK14252 161 NLSGGQQQRLCIARALATD------------PEILLFDEP-TSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARV 226 (265)
T ss_pred cCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHh
Confidence 4568999999999998555 999999999 999999999999888 44544 68999999999998764
No 307
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.66 E-value=4.5e-17 Score=185.74 Aligned_cols=182 Identities=14% Similarity=0.155 Sum_probs=113.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-+|||||.||||||||+++|+|++.|..|.+...+.+...+. +.+.+.++....+.|...... .+..+. |
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~e--Ni~l~~-p--- 572 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRE--NIALGN-P--- 572 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHH--HHhcCC-C---
Confidence 3579999999999999999999999999999877666544332 233344443333333322111 111111 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
....+.+...+...+....+. ..|. .+...... .|. .+||||.|+..+||+++++ |
T Consensus 573 -~~~~e~i~~A~~~ag~~~fI~-~lP~--------gy~t~v~E-~G~-~LSGGQrQrlalARaLl~~------------P 628 (709)
T COG2274 573 -EATDEEIIEAAQLAGAHEFIE-NLPM--------GYDTPVGE-GGA-NLSGGQRQRLALARALLSK------------P 628 (709)
T ss_pred -CCCHHHHHHHHHHhCcHHHHH-hccc--------cccccccc-CCC-CCCHHHHHHHHHHHHhccC------------C
Confidence 111222333333322222211 0011 11111111 222 2579999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHhhhhcC--CCCeEEEEecChhhhhhhh---hhccCCCccc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQARTKEEP--YKHPLVSVSDDEAEGKNVK---RKHKGEETEE 581 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~~~l~~--~g~tVIiVTHD~~e~~~~~---~~~~~~~~~~ 581 (604)
.+|||||| ||+||..+...+.+. +.+ .|.|+|+|||.+..+...+ .-.+|...+.
T Consensus 629 ~ILlLDEa-TSaLD~~sE~~I~~~--L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 629 KILLLDEA-TSALDPETEAIILQN--LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred CEEEEeCc-ccccCHhHHHHHHHH--HHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 99999999 999999998888877 433 3699999999999987775 4466666653
No 308
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.9e-17 Score=171.90 Aligned_cols=182 Identities=16% Similarity=0.117 Sum_probs=115.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+|+|+|++|||||||++.|+|...++.|.+...+..+..+.- .+.+ .+.+.+.++ . ..+...+...
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF-~-------~Tlr~NL~lA 435 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF-S-------GTLRDNLRLA 435 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH-H-------HHHHHHHhhc
Confidence 35899999999999999999999999999987655443322211 0011 011111111 0 1111111222
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
........+..+++.+++.+++.-. | .. ++.+-...|. ..|||+.++.++||.++++
T Consensus 436 ~~~AsDEel~~aL~qvgL~~l~~~~-p--------~g-l~t~lge~G~-~LSGGE~rRLAlAR~LL~d------------ 492 (573)
T COG4987 436 NPDASDEELWAALQQVGLEKLLESA-P--------DG-LNTWLGEGGR-RLSGGERRRLALARALLHD------------ 492 (573)
T ss_pred CCCCCHHHHHHHHHHcCHHHHHHhC-h--------hh-hhchhccCCC-cCCchHHHHHHHHHHHHcC------------
Confidence 2222335566677777776655210 1 11 1222222222 2579999999999999888
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhhh---hccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~~ 580 (604)
..++||||| |.|||+.+...+..+..-+-.++|+|||||++..+..+.+ ...|....
T Consensus 493 apl~lLDEP-TegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie 552 (573)
T COG4987 493 APLWLLDEP-TEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552 (573)
T ss_pred CCeEEecCC-cccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeee
Confidence 999999999 9999999988887771112348999999999999988865 44555444
No 309
>KOG0057|consensus
Probab=99.66 E-value=1e-16 Score=171.90 Aligned_cols=172 Identities=15% Similarity=0.097 Sum_probs=114.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCC----hhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVP----KPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~----~~~~~l~g~~~i~ 442 (604)
.-+|||||.|||||||+||+|.+... ..|.+...+.++..+.... +..+.|++++...- ....+.-|+
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S---lR~~Ig~VPQd~~LFndTIl~NI~YGn---- 449 (591)
T KOG0057|consen 378 GEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES---LRQSIGVVPQDSVLFNDTILYNIKYGN---- 449 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH---hhhheeEeCCcccccchhHHHHhhcCC----
Confidence 45899999999999999999999998 7888877776665543221 11122222222110 111122222
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.......+-.++++.++.+.+.- .|. ..... .-.+|.+ +||||.|+..+||+++++
T Consensus 450 -~sas~eeV~e~~k~a~~hd~i~~-l~~--------GY~T~-VGerG~~-LSGGekQrvslaRa~lKd------------ 505 (591)
T KOG0057|consen 450 -PSASDEEVVEACKRAGLHDVISR-LPD--------GYQTL-VGERGLM-LSGGEKQRVSLARAFLKD------------ 505 (591)
T ss_pred -CCcCHHHHHHHHHHcCcHHHHHh-ccc--------cchhh-Hhhcccc-cccchHHHHHHHHHHhcC------------
Confidence 22334556667777776554311 111 11112 2235544 579999999999999888
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR 572 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~ 572 (604)
|+++++||| |++||.++-..+.+. .. ...+.|+|||-|++..+..+++
T Consensus 506 a~Il~~DEa-TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~Dk 554 (591)
T KOG0057|consen 506 APILLLDEA-TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDK 554 (591)
T ss_pred CCeEEecCc-ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCE
Confidence 999999999 999999988777776 22 2358999999999999998853
No 310
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.66 E-value=1.1e-16 Score=164.59 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-++||+|+||+|||||+++|+|+.. ..|.+...+..+..+. +...+ ++.+.|.+ |+... . ..+. +...
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~l-f~~tv--~-~nl~---~~~~ 102 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFI-FSGTF--R-KNLD---PYGK 102 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCccc-chhhH--H-HHhh---hccC
Confidence 4799999999999999999999987 5677655444332211 11122 22333333 22111 1 1110 1110
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++...+.. .|.. +...... +...+|||+.++..+||+++.+ |
T Consensus 103 --~~~~~~~~~l~~~gL~~~~~~-~p~~--------l~~~~~~--~g~~LS~G~~qrl~LaRall~~------------p 157 (275)
T cd03289 103 --WSDEEIWKVAEEVGLKSVIEQ-FPGQ--------LDFVLVD--GGCVLSHGHKQLMCLARSVLSK------------A 157 (275)
T ss_pred --CCHHHHHHHHHHcCCHHHHHh-Cccc--------ccceecC--CCCCCCHHHHHHHHHHHHHhcC------------C
Confidence 012233344444444332211 0100 0000000 1123679999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
+++||||| |++||+.+...+.+. ..+ ..++|||+|||+++++..+.|+ .+|....
T Consensus 158 ~illlDEp-ts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~ 216 (275)
T cd03289 158 KILLLDEP-SAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQ 216 (275)
T ss_pred CEEEEECc-cccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEee
Confidence 99999999 999999999999888 333 2479999999999988766543 4555544
No 311
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.66 E-value=1.6e-16 Score=152.63 Aligned_cols=65 Identities=9% Similarity=0.025 Sum_probs=55.8
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCC--CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMP--PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p--P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
++||+.++..+|+++ +.+ |+++||||| |++||......+.++ ..+.+.|.|||+|||+++++..
T Consensus 88 LSgGq~qrl~laral------------~~~~~p~llLlDEP-t~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 88 LSGGELQRVKLASEL------------FSEPPGTLFILDEP-STGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred CCHHHHHHHHHHHHH------------hhCCCCCEEEEeCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 578999999999998 455 999999999 999999999988887 4455568999999999998754
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
.
T Consensus 155 ~ 155 (176)
T cd03238 155 A 155 (176)
T ss_pred C
Confidence 4
No 312
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.7e-16 Score=167.46 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=61.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+||+++.+ |++|||||| |++||+.+...+.+. ..+.+ +.|||+|||+++++.++
T Consensus 225 ~LSgGqkqRl~LARAl~~~------------p~IlLLDEP-ts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~ 290 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALE------------PEVLLMDEP-TSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRI 290 (329)
T ss_pred cCCHHHHHHHHHHHHHHhC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 4679999999999999666 999999999 999999999888887 44444 68999999999998773
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
. .-..|...+
T Consensus 291 ~Driivl~~G~i~e 304 (329)
T PRK14257 291 SDETVFFYQGWIEE 304 (329)
T ss_pred CCEEEEEECCEEEE
Confidence 3 334555443
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.66 E-value=1.4e-16 Score=179.76 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=55.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.++..+|++++. +|++|||||| |++||+.++.+|.++ +.+.+.|||+||||++++..+
T Consensus 161 ~LSgGqkqrv~la~al~~------------~p~lLLLDEP-t~~LD~~~~~~l~~~--L~~~~~tvIiisHd~~~~~~~ 224 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLS------------KPDMLLLDEP-TNHLDAESVAWLEQH--LQEYPGTVVAVTHDRYFLDNV 224 (552)
T ss_pred hcCHHHHHHHHHHHHHhc------------CCCEEEEcCC-CCCCChHHHHHHHHH--HHhCCCeEEEEeCCHHHHHhh
Confidence 456888888888888844 4999999999 999999999999998 666667999999999998765
No 314
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.66 E-value=1.5e-16 Score=177.12 Aligned_cols=66 Identities=14% Similarity=0.012 Sum_probs=56.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCC-CeEEEEecChhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYK-HPLVSVSDDEAEGK 568 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g-~tVIiVTHD~~e~~ 568 (604)
.++|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.+ .|||+||||++++.
T Consensus 400 ~~LSgGq~qrv~la~al~~~------------p~lllLDEP-t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKH------------PTLLILDEP-LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAP 466 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcC------------CCEEEEcCc-cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhh
Confidence 34679999999999999555 999999999 999999999999988 5555444 57999999999987
Q ss_pred h
Q psy3589 569 N 569 (604)
Q Consensus 569 ~ 569 (604)
.
T Consensus 467 ~ 467 (490)
T PRK10938 467 A 467 (490)
T ss_pred h
Confidence 6
No 315
>KOG0927|consensus
Probab=99.66 E-value=1.6e-16 Score=169.89 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
.-+|++||||||||||||++++|.+.|..|.+.-+....-. +..++. .+.-++.. .....+...++- ..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~-~y~Qh~--~e~ldl~~-----s~le~~~~~~~~---~~ 484 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLP-RYNQHL--AEQLDLDK-----SSLEFMMPKFPD---EK 484 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccch-hhhhhh--HhhcCcch-----hHHHHHHHhccc---cc
Confidence 35799999999999999999999999988765322111000 001000 00000000 000011111110 01
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..++.++++..- +....+-++|+|+.-++..|+.+++ +|.+|
T Consensus 485 ~~e~~r~ilgrfgLtgd---------------------~q~~p~~~LS~Gqr~rVlFa~l~~k------------qP~lL 531 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGD---------------------AQVVPMSQLSDGQRRRVLFARLAVK------------QPHLL 531 (614)
T ss_pred hHHHHHHHHHHhCCCcc---------------------ccccchhhcccccchhHHHHHHHhc------------CCcEE
Confidence 12233333444333110 0112223356777777777777744 59999
Q ss_pred cccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||| |||||+.++..+.++ ++++.++||+||||...+..+
T Consensus 532 lLDEP-tnhLDi~tid~laea--iNe~~Ggvv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 532 LLDEP-TNHLDIETIDALAEA--INEFPGGVVLVSHDFRLISQV 572 (614)
T ss_pred EecCC-CcCCCchhHHHHHHH--HhccCCceeeeechhhHHHHH
Confidence 99999 999999999999999 999999999999999988766
No 316
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=3.4e-17 Score=162.17 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHhhccce------eeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 499 DSYRAANELLRMATEGR------ICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 499 d~~~~Ar~ll~dlSgG~------l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+.....+.-++.+|.|+ +++++++|++|+|||| |-+||+..+..+.++ ++ ...++.||+++||+++.+..+
T Consensus 145 dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp-TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~l 223 (325)
T COG4586 145 DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP-TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATL 223 (325)
T ss_pred cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC-ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHh
Confidence 34444455555567777 4477889999999999 999999999988888 33 345689999999999987665
Q ss_pred ----hhhccCCCccc
Q psy3589 571 ----KRKHKGEETEE 581 (604)
Q Consensus 571 ----~~~~~~~~~~~ 581 (604)
..+++|...-+
T Consensus 224 c~rv~~I~~Gqlv~d 238 (325)
T COG4586 224 CDRVLLIDQGQLVFD 238 (325)
T ss_pred hhheEEeeCCcEeec
Confidence 46677766543
No 317
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.66 E-value=9.4e-17 Score=185.73 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=115.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-++||+|+||||||||+++|+|++.|..|.+...+.++..+.. ...+ ++.+.|-+ |+... ...+..+. +
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI--~eNi~~~~-~-- 552 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-MSGSI--FENIAGGA-P-- 552 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc-CcccH--HHHHhcCC-C--
Confidence 35799999999999999999999999999988766665543321 1222 23333322 33221 11222221 1
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.....+...++..++...+.- .|.. +-.... ..| ..+||||.|+..+||+++++
T Consensus 553 ---~~~e~i~~al~~a~l~~~i~~-lp~G--------~dt~ig-e~G-~~LSGGQrQRialARAll~~------------ 606 (686)
T TIGR03797 553 ---LTLDEAWEAARMAGLAEDIRA-MPMG--------MHTVIS-EGG-GTLSGGQRQRLLIARALVRK------------ 606 (686)
T ss_pred ---CCHHHHHHHHHHcCcHHHHHh-cccc--------cccccc-CCC-CCCCHHHHHHHHHHHHHhcC------------
Confidence 123345556666665544321 1111 000111 122 23679999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhhh---hccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~~ 580 (604)
|++|||||| |++||..+...+.+. +.+.+.|+|+|||++..+..+++ -.+|...+
T Consensus 607 p~iLiLDEp-TS~LD~~te~~i~~~--L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 607 PRILLFDEA-TSALDNRTQAIVSES--LERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQ 664 (686)
T ss_pred CCEEEEeCC-ccCCCHHHHHHHHHH--HHHhCCeEEEEecChHHHHcCCEEEEEECCEEEE
Confidence 999999999 999999998888887 55557899999999998877654 34555543
No 318
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.65 E-value=5e-16 Score=154.12 Aligned_cols=74 Identities=15% Similarity=-0.040 Sum_probs=55.6
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV- 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~- 570 (604)
.|+|+.++..+|++++.+ |+++||||| +++||......+..+ .... .+.|+|+|||++.++..+
T Consensus 105 lS~G~~qrv~la~al~~~------------p~llllDEP-~~~lD~~~~~~~~~~l~~~~-~~~~ii~vsH~~~~~~~~~ 170 (213)
T PRK15177 105 YSVTMKTHLAFAINLLLP------------CRLYIADGK-LYTGDNATQLRMQAALACQL-QQKGLIVLTHNPRLIKEHC 170 (213)
T ss_pred cCHHHHHHHHHHHHHhcC------------CCEEEECCC-CccCCHHHHHHHHHHHHHHh-hCCcEEEEECCHHHHHHhc
Confidence 457888888888888554 999999999 999999998887775 2211 246899999999998754
Q ss_pred ---hhhccCCCcc
Q psy3589 571 ---KRKHKGEETE 580 (604)
Q Consensus 571 ---~~~~~~~~~~ 580 (604)
...+.|....
T Consensus 171 d~i~~l~~G~i~~ 183 (213)
T PRK15177 171 HAFGVLLHGKITM 183 (213)
T ss_pred CeeEEEECCeEEE
Confidence 2335555543
No 319
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.4e-16 Score=155.04 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=52.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEe-cChhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVS-DDEAEGK 568 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVT-HD~~e~~ 568 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+.++ ..+.+. +.|+||+| |+.+++.
T Consensus 118 ~LS~Ge~qrl~laral~~~------------p~llllDEP-t~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~ 184 (202)
T cd03233 118 GISGGERKRVSIAEALVSR------------ASVLCWDNS-TRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIY 184 (202)
T ss_pred hCCHHHHHHHHHHHHHhhC------------CCEEEEcCC-CccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHH
Confidence 3679999999999999666 999999999 999999999988887 444433 66766655 5566665
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
++
T Consensus 185 ~~ 186 (202)
T cd03233 185 DL 186 (202)
T ss_pred Hh
Confidence 54
No 320
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.65 E-value=1.2e-16 Score=174.08 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=63.6
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.|+..+|++++. +|++||+||| |.+||+..+..+.++ +.+ ++.|+++|+||||+..+.++
T Consensus 155 LSGG~rQRv~iAmALa~------------~P~LLIaDEP-TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~ 221 (539)
T COG1123 155 LSGGMRQRVMIAMALAL------------KPKLLIADEP-TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221 (539)
T ss_pred cCchHHHHHHHHHHHhC------------CCCEEEECCC-ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHh
Confidence 56888888888888854 4999999999 999999999888887 444 46799999999999999877
Q ss_pred h----hhccCCCcccC
Q psy3589 571 K----RKHKGEETEED 582 (604)
Q Consensus 571 ~----~~~~~~~~~~~ 582 (604)
. .-++|..++..
T Consensus 222 aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 222 ADRVVVMYKGEIVETG 237 (539)
T ss_pred cCeEEEEECCEEEEec
Confidence 3 55677766654
No 321
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.65 E-value=1.7e-16 Score=180.57 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=114.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-++||||++|||||||+++|+|++ |..|.+...+.++..+.. ...+.++......|.... ...+..+. + .
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI--~eNI~~g~-~--~ 449 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL--RDNVLLGN-P--D 449 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH--HHHhhcCC-C--C
Confidence 3579999999999999999999999 888887666555433221 123333332223343322 22222221 1 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+..+++...+.- .|.. +....+. +|. .+||||.|+..+||+++++ |
T Consensus 450 --~~~eei~~al~~a~l~~~i~~-lp~G--------~dT~vge-~G~-~LSGGQrQRialARAll~~------------~ 504 (588)
T PRK11174 450 --ASDEQLQQALENAWVSEFLPL-LPQG--------LDTPIGD-QAA-GLSVGQAQRLALARALLQP------------C 504 (588)
T ss_pred --CCHHHHHHHHHHhCHHHHHHh-cccc--------ccccccc-CCC-CCCHHHHHHHHHHHHHhcC------------C
Confidence 123445556666665544321 1111 0011111 222 2679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
++|||||| |++||..+...+.+. ..+ ..+.|+|+|||++..+...+++ .+|...
T Consensus 505 ~IliLDE~-TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 505 QLLLLDEP-TASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CEEEEeCC-ccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 99999999 999999998888876 333 2479999999999888776543 445444
No 322
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.65 E-value=3.1e-16 Score=169.90 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=105.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe----cCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL----TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~----~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.++|+|.||||||||+|+|+|.+.++.|.+...++....... ..++ .+.+.+.++ |. .+....++.|..|...
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~-p~-LsVaeNifLgre~~~~ 113 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV-PN-LSVAENIFLGREPTRR 113 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhcc-CC-ccHHHHhhcccccccC
Confidence 589999999999999999999999999988666554322110 1112 222333322 22 2233344444433221
Q ss_pred --ccCc---hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 444 --LREP---YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 444 --l~~~---~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
+.+. ...+..++.++++. . . .....+ .++.|+.|.+.+|+++..
T Consensus 114 ~g~id~~~m~~~A~~~l~~lg~~----~---------------~-~~~~v~--~LsiaqrQ~VeIArAl~~--------- 162 (500)
T COG1129 114 FGLIDRKAMRRRARELLARLGLD----I---------------D-PDTLVG--DLSIAQRQMVEIARALSF--------- 162 (500)
T ss_pred CCccCHHHHHHHHHHHHHHcCCC----C---------------C-hhhhhh--hCCHHHHHHHHHHHHHhc---------
Confidence 1110 11112222222110 0 0 011112 245788899999999844
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+++++||||| |+.|+......|.++ ..+++.|.+||+|||.++|+.++
T Consensus 163 ---~arllIlDEP-TaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i 211 (500)
T COG1129 163 ---DARVLILDEP-TAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEI 211 (500)
T ss_pred ---CCCEEEEcCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHh
Confidence 4999999999 999999999999888 78899999999999999999988
No 323
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.65 E-value=8.4e-17 Score=186.85 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=113.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-++||||+||||||||+++|+|++.|+.|.+...+.++..+. +...+ ++.+.|.+ |.... ...+..+. +
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTi--~eNi~l~~-~-- 578 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL-FEGTV--RDNLTLWD-P-- 578 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh-hhccH--HHHhhCCC-C--
Confidence 3579999999999999999999999999998866555443221 11222 22233322 22221 11111111 1
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
......+...++..++...+.- .|.. +-.... ..| ..+||||.|+..+||+++++
T Consensus 579 --~~~~~~i~~al~~~~l~~~i~~-lp~g--------l~t~i~-e~G-~~LSGGQrQRiaLARall~~------------ 633 (710)
T TIGR03796 579 --TIPDADLVRACKDAAIHDVITS-RPGG--------YDAELA-EGG-ANLSGGQRQRLEIARALVRN------------ 633 (710)
T ss_pred --CCCHHHHHHHHHHhCCHHHHHh-CcCc--------ccceec-cCC-CCCCHHHHHHHHHHHHHhhC------------
Confidence 1123344455555555443311 1111 000111 123 23679999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhhh---hccCCCc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEET 579 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~ 579 (604)
|+++||||| |++||..+...+.+. +.+.++|+|+|||++..+..+++ -.+|...
T Consensus 634 p~iliLDEp-tS~LD~~te~~i~~~--l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 634 PSILILDEA-TSALDPETEKIIDDN--LRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCEEEEECc-cccCCHHHHHHHHHH--HHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999 999999999888887 55568999999999998876654 3444444
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.65 E-value=2.4e-16 Score=194.92 Aligned_cols=167 Identities=14% Similarity=0.040 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCCe-EEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-.+||+|+|||||||||++|+|+..++.|.+...+..+... .....+ ++.+.+++.........+........+..
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~- 2044 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPA- 2044 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCH-
Confidence 46999999999999999999999999999876555443210 001112 22333333211111111111111111000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++.. .. .+..-.+|||+.++..+|++++.+ |+
T Consensus 2045 ~~~~~~v~~lLe~lgL~~--------------------~~--dk~~~~LSGGqKqRLslA~ALi~~------------P~ 2090 (2272)
T TIGR01257 2045 EEIEKVANWSIQSLGLSL--------------------YA--DRLAGTYSGGNKRKLSTAIALIGC------------PP 2090 (2272)
T ss_pred HHHHHHHHHHHHHcCCHH--------------------Hh--cCChhhCCHHHHHHHHHHHHHhcC------------CC
Confidence 000111222333322211 11 111223569999999999999665 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+++|||| |+|||+.++..+.++ ..+.+.|.|||++||+++++..+
T Consensus 2091 VLLLDEP-TsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~l 2136 (2272)
T TIGR01257 2091 LVLLDEP-TTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEAL 2136 (2272)
T ss_pred EEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 9999999 999999999999988 55555689999999999999765
No 325
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.65 E-value=1.9e-16 Score=177.88 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec---CCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT---DNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~---~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-+++|||++|||||||+++|+|+..++.|.+...+.++..+ .. ..+.++....+.|+.... ..+..+. +
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~--eNI~~g~-~--- 433 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR--DNLRLGR-P--- 433 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH--HHHhccC-C---
Confidence 357999999999999999999999999999886665544332 11 122222222222332211 1222221 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...++..++.+.+.- .|.. +-...+ .+|. .+||||.|+..+||+++++ |
T Consensus 434 -~~~~e~i~~al~~a~l~~~i~~-lp~G--------ldT~ig-e~G~-~LSGGQrQRiaiARall~~------------~ 489 (529)
T TIGR02868 434 -DATDEELWAALERVGLADWLRS-LPDG--------LDTVLG-EGGA-RLSGGERQRLALARALLAD------------A 489 (529)
T ss_pred -CCCHHHHHHHHHHcCCHHHHHh-Cccc--------ccchhc-cccC-cCCHHHHHHHHHHHHHhcC------------C
Confidence 0123345556666655443311 1111 111111 1232 3679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecCh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDE 564 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~ 564 (604)
+++||||| |++||..+...+.+. ..+ ..++|+|+|||++
T Consensus 490 ~iliLDE~-TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEP-TEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 99999999 999999998888877 222 2478999999974
No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3e-16 Score=148.00 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=55.8
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++||+.++..+|++++.+ |++++|||| |++||..++..+.++ ..+...+.|+|++||++.++..+
T Consensus 81 lS~G~~~r~~l~~~l~~~------------~~i~ilDEp-~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 81 LSGGQRQRVALARALLLN------------PDLLLLDEP-TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCHHHHHHHHHHHHHhcC------------CCEEEEeCC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 468999999999999555 999999999 999999999999887 44444468999999999998876
No 327
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.8e-16 Score=161.93 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=60.8
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+|||+.++..+|++++.. |++|||||| |++||+.++..|.++ ..+.+ +.||||||||+.++..
T Consensus 199 ~~LSgGq~qrv~LAraL~~~------------p~lLLLDEP-tsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~ 264 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVD------------PEVILMDEP-ASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAAR 264 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcC------------CCEEEEeCC-cccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHH
Confidence 34679999999999999555 999999999 999999999999888 44444 5899999999999876
Q ss_pred h-hhh----ccCCCcc
Q psy3589 570 V-KRK----HKGEETE 580 (604)
Q Consensus 570 ~-~~~----~~~~~~~ 580 (604)
+ .++ .+|....
T Consensus 265 ~~d~i~~~l~~G~i~~ 280 (305)
T PRK14264 265 ISDQTAVFLTGGELVE 280 (305)
T ss_pred hcCEEEEEecCCEEEE
Confidence 4 332 4565544
No 328
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.64 E-value=3e-16 Score=160.15 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||+|||||+++|+|+.++..|.+...+..+.... ....+ ++.+.+.+ ++.. ... .+ .+...
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l-~~~t--v~~-nl---~~~~~ 120 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPIL-FSGS--IRF-NL---DPECK 120 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcc-cccH--HHH-hc---CcCCC
Confidence 369999999999999999999999988887654443321110 01112 22333322 1111 000 00 00000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++....+...+... |.. +-... ......++||+.++..+|++++.+ |
T Consensus 121 --~~~~~~~~~l~~~~l~~~~~~~-~~~--------l~~~~--~~~~~~LS~G~~qrl~laral~~~------------p 175 (257)
T cd03288 121 --CTDDRLWEALEIAQLKNMVKSL-PGG--------LDAVV--TEGGENFSVGQRQLFCLARAFVRK------------S 175 (257)
T ss_pred --CCHHHHHHHHHHhCcHHHHhhc-ccc--------cCcEe--ccCCCcCCHHHHHHHHHHHHHhcC------------C
Confidence 0011122222222222221100 000 00000 011224679999999999999555 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
+++||||| |++||+.+...+.++ ..+. .+.|||+|||++.++..+.+. +.|...
T Consensus 176 ~llllDEP-t~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~ 233 (257)
T cd03288 176 SILIMDEA-TASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILV 233 (257)
T ss_pred CEEEEeCC-ccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEE
Confidence 99999999 999999999988887 3343 489999999999999765443 455544
No 329
>PLN03211 ABC transporter G-25; Provisional
Probab=99.64 E-value=3.6e-16 Score=178.86 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=56.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh-hhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA-EGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~-e~~~ 569 (604)
.+|||+.++..+|++++.+ |++|+|||| |+|||..+...+.++ ..+.+.|.|||++||++. ++.+
T Consensus 206 ~LSgGerqRv~ia~aL~~~------------P~iLlLDEP-tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 206 GISGGERKRVSIAHEMLIN------------PSLLILDEP-TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred CcChhhhhHHHHHHHHHhC------------CCEEEEeCC-CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 3679999999999999776 999999999 999999999998888 556667899999999987 4544
No 330
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=1.9e-15 Score=153.91 Aligned_cols=178 Identities=21% Similarity=0.281 Sum_probs=122.8
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHhh--ccCCCcEEEEEeCCCCCCHHhHH--HHHHHHHhhCCCceEEEEeeccCc
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYVT--GTLGKDMILVMNKIDLAPAPLVL--AWKHYFQSKFPKLTILCFTSYPTY 270 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv~--~~~~K~~ILVlNK~DLv~~~~~~--~w~~yf~~~~p~~~vv~~Sa~~~~ 270 (604)
+...|-+++|+-+-.|-+. ...|++|+. +..+...|+||||+||++.+... ++...|... ++.++++|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~--gy~v~~~s~~--- 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFN-TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI--GYPVLFVSAK--- 150 (301)
T ss_pred ccccceEEEEEeccCCCCC-HHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhC--CeeEEEecCc---
Confidence 3448889999999999753 455788876 35678889999999999887766 566666665 4778888876
Q ss_pred ccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhh
Q psy3589 271 NLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIEL 350 (604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (604)
++.|+++|.+.+.
T Consensus 151 -------------------------~~~~~~~l~~~l~------------------------------------------ 163 (301)
T COG1162 151 -------------------------NGDGLEELAELLA------------------------------------------ 163 (301)
T ss_pred -------------------------CcccHHHHHHHhc------------------------------------------
Confidence 3345555443321
Q ss_pred hhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCCCcc
Q psy3589 351 KKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCPGLV 423 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~pGl~ 423 (604)
+ .++.|+|++|||||||||.|.+.....+|.+.. +|++...+.+..+..++||||+.
T Consensus 164 ---------------~-~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~ 227 (301)
T COG1162 164 ---------------G-KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFR 227 (301)
T ss_pred ---------------C-CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCC
Confidence 1 257899999999999999999987766666632 44555666777789999999997
Q ss_pred CCCCCChhhhHhhcccccccccCchHHHHHHHHhcCHHHHhhcCCCC
Q psy3589 424 FPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPD 470 (604)
Q Consensus 424 ~p~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~ 470 (604)
........ .+.+...+..+..++..|.+..|.|...|.
T Consensus 228 ~~~l~~~~---------~e~l~~~F~ef~~~~~~CkFr~C~H~~EPg 265 (301)
T COG1162 228 SLGLAHLE---------PEDLVQAFPEFAELARQCKFRDCTHTHEPG 265 (301)
T ss_pred ccCcccCC---------HHHHHHHhHHHHHHhcCCCCCCCCCCCCCC
Confidence 44331111 112222344555666677777777776664
No 331
>KOG0055|consensus
Probab=99.64 E-value=2.2e-16 Score=183.81 Aligned_cols=184 Identities=17% Similarity=0.185 Sum_probs=118.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec---CCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT---DNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~---~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+|+|||+|||||||++++|.+++.|..|.+...+.+++.+... ..+ .+.+.| +.|... ....+..|.-.
T Consensus 379 G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP-vlF~~t--I~eNI~~G~~d-- 453 (1228)
T KOG0055|consen 379 GQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP-VLFATT--IRENIRYGKPD-- 453 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech-hhhccc--HHHHHhcCCCc--
Confidence 357999999999999999999999999999998877776655332 122 222333 222211 12222323111
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.....+...++..+....+. ..| +-.+...-.+|. ++||||.||.++||+++++
T Consensus 454 ---at~~~i~~a~k~ana~~fi~-~lp---------~g~~T~vge~g~-qLSGGQKQRIAIARalv~~------------ 507 (1228)
T KOG0055|consen 454 ---ATREEIEEAAKAANAHDFIL-KLP---------DGYDTLVGERGV-QLSGGQKQRIAIARALVRN------------ 507 (1228)
T ss_pred ---ccHHHHHHHHHHccHHHHHH-hhH---------HhhcccccCCCC-CCChHHHHHHHHHHHHHhC------------
Confidence 11223333333332222210 000 001111112333 2689999999999999888
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhh---hhccCCCcccC
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEETEED 582 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~~~~ 582 (604)
|++|||||| |++||.++...+++.......|.|.|+|+|++..++..+ ..++|..++..
T Consensus 508 P~ILLLDEa-TSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 508 PKILLLDEA-TSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CCEEEecCc-ccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 999999999 999999999999988433456899999999999988764 55677766653
No 332
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3e-16 Score=148.76 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=42.5
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.++++.++++|||| .|+||......+... +. ..+.|+|||+|-||.++|..+
T Consensus 149 VlaQdTdyvlLDEP-LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 149 VLAQDTDYVLLDEP-LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred eeeccCcEEEecCc-ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 44677999999999 999998776666555 33 456799999999999999776
No 333
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.64 E-value=2.3e-16 Score=179.13 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=112.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-+++|+|+||+|||||+++|+|+..|..|.+...+.+...+.. ...+.++....+.|+... ...+..+..+ .
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti--~~Ni~~~~~~--~ 444 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI--ANNIAYARTE--Q 444 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchH--HHHHhcCCCC--C
Confidence 35799999999999999999999999999988666554433211 122222222222333221 1122222111 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+...++...+.- .|.. +-...+ ..| ..+||||.|+..+||+++++ |
T Consensus 445 --~~~~~i~~al~~~~l~~~i~~-lp~G--------ldt~ig-~~g-~~LSGGqrQRi~LARall~~------------~ 499 (582)
T PRK11176 445 --YSREQIEEAARMAYAMDFINK-MDNG--------LDTVIG-ENG-VLLSGGQRQRIAIARALLRD------------S 499 (582)
T ss_pred --CCHHHHHHHHHHhCcHHHHHh-cccc--------cCceeC-CCC-CcCCHHHHHHHHHHHHHHhC------------C
Confidence 112344555555555443211 1111 000011 122 23679999999999999887 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~ 579 (604)
+++||||| |++||..+...+.+. ..+ ..++|+|+|||++..+..+++ ..+|...
T Consensus 500 ~ililDEp-tsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 500 PILILDEA-TSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557 (582)
T ss_pred CEEEEECc-cccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 99999999 999999998888777 333 247999999999988877654 3445443
No 334
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.63 E-value=3.5e-16 Score=175.71 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEE-ecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRL-CDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l-~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|+|+||||||||+++|+|+.++..|.+...+.++..+.. ...+.+ .+.| ..|+.. ....+..+. +
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~t--i~~Ni~~~~-~-- 421 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP-FLFAGT--IAENIRLAR-P-- 421 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC-cccCcC--HHHHHhccC-C--
Confidence 35799999999999999999999999999988655544332211 112222 2323 233322 111222221 1
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+...++..++...+.- .|.. +-..... .| ..+||||.|+..+||+++++
T Consensus 422 ~--~~~~~i~~a~~~~~l~~~i~~-lp~G--------ldt~v~e-~g-~~LSgGq~qri~laRal~~~------------ 476 (529)
T TIGR02857 422 D--ASDAEIRRALERAGLDEFVAA-LPQG--------LDTLIGE-GG-AGLSGGQAQRLALARAFLRD------------ 476 (529)
T ss_pred C--CCHHHHHHHHHHcCcHHHHHh-Cccc--------ccchhcc-cc-ccCCHHHHHHHHHHHHHhcC------------
Confidence 0 112344555555555443311 1110 0011111 22 23679999999999999776
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR 572 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~ 572 (604)
|+++||||| |++||..+...+.+. ..+. .++|+|+|||++..+...++
T Consensus 477 ~~ililDE~-ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ 525 (529)
T TIGR02857 477 APLLLLDEP-TAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADR 525 (529)
T ss_pred CCEEEEeCc-ccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCE
Confidence 999999999 999999998888877 3332 47999999999988766544
No 335
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.63 E-value=6.9e-16 Score=159.38 Aligned_cols=66 Identities=12% Similarity=-0.050 Sum_probs=54.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.+|||+.++..+|++++.+ |+++||||| |++||+.++..+... ..+. .+.|||+||||+.++..
T Consensus 159 ~LSgGq~qrv~lAraL~~~------------p~iLiLDEP-t~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~ 224 (282)
T cd03291 159 TLSGGQRARISLARAVYKD------------ADLYLLDSP-FGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK 224 (282)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEECC-CccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHh
Confidence 4679999999999999655 999999999 999999998877653 2333 47899999999998864
Q ss_pred hh
Q psy3589 570 VK 571 (604)
Q Consensus 570 ~~ 571 (604)
+.
T Consensus 225 ~d 226 (282)
T cd03291 225 AD 226 (282)
T ss_pred CC
Confidence 43
No 336
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.63 E-value=4.4e-16 Score=192.61 Aligned_cols=164 Identities=12% Similarity=0.020 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCCe-EEecCCCccCCCC-CChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDNI-RLCDCPGLVFPSK-VPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~~-~l~D~pGl~~p~~-~~~~~~~l~g~~~i~~l 444 (604)
.+||+|+|||||||||++|+|+.+|+.|.+...+.++... .....+ ++.+.+.+ ++.. +...+...........
T Consensus 958 i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L-~~~LTV~E~L~f~~~lkg~~~- 1035 (2272)
T TIGR01257 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL-FHHLTVAEHILFYAQLKGRSW- 1035 (2272)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcC-CCCCCHHHHHHHHHHhcCCCH-
Confidence 5899999999999999999999999988876555443210 001122 22233322 2221 1111111111100000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..++..+++... . .....++|||+.++..+|++++.+ |+
T Consensus 1036 ~~~~~~v~~lL~~vgL~~~--------------------~--~~~~~~LSGGqKQRLsLArALi~~------------Pk 1081 (2272)
T TIGR01257 1036 EEAQLEMEAMLEDTGLHHK--------------------R--NEEAQDLSGGMQRKLSVAIAFVGD------------AK 1081 (2272)
T ss_pred HHHHHHHHHHHHHcCCchh--------------------h--cCChhhCCHHHHHHHHHHHHHHcC------------CC
Confidence 0001122233333322111 1 112234679999999999999665 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++||||| |++||+.++..+.++ .+++ .|.|||++|||++++..+
T Consensus 1082 VLLLDEP-TSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~l 1126 (2272)
T TIGR01257 1082 VVVLDEP-TSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLL 1126 (2272)
T ss_pred EEEEECC-CcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHh
Confidence 9999999 999999999999988 4554 489999999999999765
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.63 E-value=8.3e-16 Score=176.51 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccc--ccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIA--QLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~--~l~ 445 (604)
-+++|+|+||||||||+++|+|+.++..|.+....+ ..-.++.+.|.+ ++. .....+..+..... ...
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~-------~~i~~v~Q~~~l-~~~--tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK-------GKLFYVPQRPYM-TLG--TLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC-------CcEEEECCCCCC-CCc--CHHHHHhcCCChhhhhccC
Confidence 469999999999999999999999887776532211 011122333322 222 12222222110000 000
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..+++.+++...+.. |.. ++.. ....+ .+|||+.++..+||+++.+ |++
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~--~~g------~~~~---~~~~~--~LSgGqkQRl~iARal~~~------------p~i 603 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER--EGG------WSAV---QDWMD--VLSGGEKQRIAMARLFYHK------------PQF 603 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh--cCC------cccc---ccccc--CCCHHHHHHHHHHHHHHcC------------CCE
Confidence 112334455555555443321 110 0000 01112 3679999999999999666 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKR 572 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~~ 572 (604)
+||||| |++||+.+...+.+. +++.|.|+|+|||++..+...++
T Consensus 604 llLDEp-ts~LD~~~~~~l~~~--l~~~~~tvI~isH~~~~~~~~d~ 647 (659)
T TIGR00954 604 AILDEC-TSAVSVDVEGYMYRL--CREFGITLFSVSHRKSLWKYHEY 647 (659)
T ss_pred EEEeCC-ccCCCHHHHHHHHHH--HHHcCCEEEEEeCchHHHHhCCE
Confidence 999999 999999999999888 66678999999999998765543
No 338
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.63 E-value=3.1e-16 Score=178.48 Aligned_cols=181 Identities=18% Similarity=0.202 Sum_probs=115.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-++||+|+||||||||+++|+|+..|..|.+...+.++..+. +...+.++......|+.... ..+..+. +
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~--~NI~~~~-~--- 440 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL--ANVTLGR-D--- 440 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH--HHHHhCC-C---
Confidence 3579999999999999999999999999998866655443321 11223332222223333211 1222221 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..+++..++...+.- .|.. +-.... ..|. .+||||.|+..+||+++++ |
T Consensus 441 --~~d~~i~~a~~~~gl~~~i~~-lp~G--------ldt~i~-e~g~-~LSGGqrQRialARaLl~~------------~ 495 (592)
T PRK10790 441 --ISEEQVWQALETVQLAELARS-LPDG--------LYTPLG-EQGN-NLSVGQKQLLALARVLVQT------------P 495 (592)
T ss_pred --CCHHHHHHHHHHcCcHHHHHh-cccc--------cccccc-CCCC-CCCHHHHHHHHHHHHHHhC------------C
Confidence 123445566666666544321 1111 000111 1222 2679999999999999877 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
+++||||| |++||..+...+.+. ..+. .++|+|+|||++..+..++++ .+|...+
T Consensus 496 ~illlDEp-ts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 496 QILILDEA-TANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 99999999 999999998888777 3332 368999999999988877543 4555443
No 339
>KOG0066|consensus
Probab=99.63 E-value=5.3e-16 Score=161.30 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-+|+|||||||||||||.+|.|.+.|..|...-..+ +.+ |++ ..... . .+...
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----L~i----------G~F-dQh~~---E---------~L~~E 666 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----LRI----------GWF-DQHAN---E---------ALNGE 666 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----eee----------ech-hhhhH---H---------hhccc
Confidence 479999999999999999999999988776532111 110 111 11100 0 11111
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHH-----HHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICD-----GWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~-----~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
..++.|+...+++..- .+...+. ..+....+..++||+.-++.+|..- +..
T Consensus 667 etp~EyLqr~FNlpyq------------~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa------------l~~ 722 (807)
T KOG0066|consen 667 ETPVEYLQRKFNLPYQ------------EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA------------LGG 722 (807)
T ss_pred cCHHHHHHHhcCCChH------------HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh------------cCC
Confidence 2344555544443210 0111111 1111122223456766666665544 445
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| ||+||++++..|.+. ++.+++.|||||||...+.+-
T Consensus 723 PDvlILDEP-TNNLDIESIDALaEA--Iney~GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 723 PDVLILDEP-TNNLDIESIDALAEA--INEYNGGVIMVSHDERLIVET 767 (807)
T ss_pred CCEEEecCC-CCCcchhhHHHHHHH--HHhccCcEEEEecccceeeec
Confidence 999999999 999999999999999 999999999999998876544
No 340
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.62 E-value=7.3e-16 Score=159.70 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=119.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe------cC--CeEEecCCCccCCCCCChhhhHhhcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL------TD--NIRLCDCPGLVFPSKVPKPLQVLMGS 438 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~------~~--~~~l~D~pGl~~p~~~~~~~~~l~g~ 438 (604)
.-++||||.+|||||||=.+|++++.+. |.+.+.+..+..... .. .+.+.|..|...|...-. +++..-
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~--qII~EG 389 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVG--QIIEEG 389 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHH--HHhhhh
Confidence 3589999999999999999999999886 888766665543221 11 245556555554443211 111111
Q ss_pred ccccc----ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccc
Q psy3589 439 FPIAQ----LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEG 514 (604)
Q Consensus 439 ~~i~~----l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG 514 (604)
+.+.+ -.+....+...+..+++.......+|.. -||||.|+.++||++
T Consensus 390 L~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE---------------------FSGGQRQRIAIARAl------- 441 (534)
T COG4172 390 LRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE---------------------FSGGQRQRIAIARAL------- 441 (534)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc---------------------cCcchhhHHHHHHHH-------
Confidence 11111 1111223334444444433322222221 369999999999999
Q ss_pred eeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh----hhhccCCCcccCcCc
Q psy3589 515 RICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV----KRKHKGEETEEDEGE 585 (604)
Q Consensus 515 ~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~~~~~ 585 (604)
+..|.+++|||| |+.||...+..+.++ +.+ +++|.+-+|||||+..+..+ +.-++|..++..+.+
T Consensus 442 -----iLkP~~i~LDEP-TSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~ 512 (534)
T COG4172 442 -----ILKPELILLDEP-TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTE 512 (534)
T ss_pred -----hcCCcEEEecCC-chHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHH
Confidence 445999999999 999999988888877 444 45699999999999999876 466778887755443
No 341
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.62 E-value=6.1e-16 Score=174.35 Aligned_cols=173 Identities=14% Similarity=0.070 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeE-EecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIR-LCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~-l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|+|+||||||||+++|+|...+..|.+...+.++..+. ....+. +.+.|.+ |+.. ....+..+. +
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l-f~~t--i~~Ni~~~~-~-- 417 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL-FPGT--VAENIARFG-E-- 417 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccc-cccc--HHHHHhccC-C--
Confidence 3579999999999999999999999999888755444332211 111222 2233322 2221 111111110 0
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+...+...++...+.. .|.. +..... .+...+||||.|+..+||+++++
T Consensus 418 ~--~~~~~~~~~~~~~~~~~~i~~-l~~g--------l~t~~~--~~g~~LSgGq~qrl~lARall~~------------ 472 (544)
T TIGR01842 418 N--ADPEKIIEAAKLAGVHELILR-LPDG--------YDTVIG--PGGATLSGGQRQRIALARALYGD------------ 472 (544)
T ss_pred C--CCHHHHHHHHHHhChHHHHHh-Cccc--------cccccC--CCcCCCCHHHHHHHHHHHHHhcC------------
Confidence 0 112223333444443332210 0110 000011 11223679999999999999776
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
|+++||||| |++||..+...+.+. ..+...+.|+|+|||+...+..++
T Consensus 473 ~~ililDEp-ts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d 521 (544)
T TIGR01842 473 PKLVVLDEP-NSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVD 521 (544)
T ss_pred CCEEEEeCC-ccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 999999999 999999999988877 344345789999999998776554
No 342
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.62 E-value=4.9e-16 Score=176.73 Aligned_cols=171 Identities=19% Similarity=0.217 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-+++|+|+||||||||+++|+|+..|..|.+...+.++..+.. ... .++.+.|.+ |.... ...+..+. + .
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~Ti--~~Ni~~~~-~--~ 435 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL-FNRSI--EDNIRVGR-P--D 435 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc-ccccH--HHHHhcCC-C--C
Confidence 4699999999999999999999999998887655544332211 112 233344433 22221 11222221 1 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+..+++...+.- .|.. ++......| ..+||||.|+..+||+++++ |
T Consensus 436 --~~d~~i~~al~~~~l~~~i~~-lp~g---------ldt~i~~~g-~~LSgGq~QRialARall~~------------~ 490 (588)
T PRK13657 436 --ATDEEMRAAAERAQAHDFIER-KPDG---------YDTVVGERG-RQLSGGERQRLAIARALLKD------------P 490 (588)
T ss_pred --CCHHHHHHHHHHhCHHHHHHh-Cccc---------ccchhcCCC-CCCCHHHHHHHHHHHHHhcC------------C
Confidence 112344555566555443321 1111 011111122 22579999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+++||||| |++||..+...+.+. ..+ ..++|+|+|||+...+...+
T Consensus 491 ~iliLDEp-ts~LD~~t~~~i~~~l~~~-~~~~tvIiitHr~~~~~~~D 537 (588)
T PRK13657 491 PILILDEA-TSALDVETEAKVKAALDEL-MKGRTTFIIAHRLSTVRNAD 537 (588)
T ss_pred CEEEEeCC-ccCCCHHHHHHHHHHHHHH-hcCCEEEEEEecHHHHHhCC
Confidence 99999999 999999998888776 223 23799999999999887664
No 343
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.62 E-value=6e-16 Score=164.71 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=105.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe----cCCe-EEecCCCccCCCCCChhhhHhhccccc--
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL----TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPI-- 441 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~----~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i-- 441 (604)
..||+|.||+|||||+++|.|.+.|+.|.+...++....-.. ..++ .+.+.+.++ +.+ +....++.|.-+.
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv-~~l-TV~ENiiLg~e~~~~ 109 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV-PTL-TVAENIILGLEPSKG 109 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccc-ccc-chhhhhhhcCccccc
Confidence 478999999999999999999999999998766655432110 0111 111111111 111 1222333332211
Q ss_pred --ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 442 --AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 442 --~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
-........+..+++++++.- +. ....+- ++-|+.|++.+.++|.++
T Consensus 110 ~~~~~~~~~~~i~~l~~~yGl~v------dp--------------~~~V~d--LsVG~qQRVEIlKaLyr~--------- 158 (501)
T COG3845 110 GLIDRRQARARIKELSERYGLPV------DP--------------DAKVAD--LSVGEQQRVEILKALYRG--------- 158 (501)
T ss_pred cccCHHHHHHHHHHHHHHhCCCC------Cc--------------cceeec--CCcchhHHHHHHHHHhcC---------
Confidence 011112223334444433310 00 001122 346889999999988655
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |+.|-+.....|... +.+++.|+|||+|||-+.|++++
T Consensus 159 ---a~iLILDEP-TaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~i 206 (501)
T COG3845 159 ---ARLLILDEP-TAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAI 206 (501)
T ss_pred ---CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence 999999999 999999999998888 77888999999999999999987
No 344
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.62 E-value=6.7e-16 Score=175.37 Aligned_cols=172 Identities=15% Similarity=0.132 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeE-EecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIR-LCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~-l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|+|+||+|||||+++|+|...+..|.+...+.++..+. +...+. +.+.|. .|+.. ....+..+. +
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-lf~~t--i~~Ni~~~~-~-- 434 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG-LFNRS--IRENIRLGR-E-- 434 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCc-cCccc--HHHHHhcCC-C--
Confidence 3579999999999999999999999999888765444332211 111222 222232 22221 111121111 1
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.. ....+...+...++...+. ..|.. +..... ..| ..+||||.++..+||+++++
T Consensus 435 ~~--~~~~~~~a~~~~~~~~~i~-~l~~g--------~~t~~~-~~~-~~LSgGq~qrl~lARall~~------------ 489 (585)
T TIGR01192 435 GA--TDEEVYEAAKAAAAHDFIL-KRSNG--------YDTLVG-ERG-NRLSGGERQRLAIARAILKN------------ 489 (585)
T ss_pred CC--CHHHHHHHHHHhCcHHHHH-hcccc--------ccchhc-CCC-CCCCHHHHHHHHHHHHHhcC------------
Confidence 00 1122333333333322210 00100 000111 112 23679999999999999776
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
|+++||||| |++||..+...+.+. ..+ ..+.|||+|||+...+..++
T Consensus 490 p~ililDEp-ts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~~d 537 (585)
T TIGR01192 490 APILVLDEA-TSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVRNAD 537 (585)
T ss_pred CCEEEEECC-ccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHHcCC
Confidence 999999999 999999999988877 333 24799999999998886654
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.62 E-value=4.5e-16 Score=179.21 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=54.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|+++ +.+|++|||||| |+|||+.++.+|.++ +..++.||||||||++++..+
T Consensus 344 ~LSgG~k~rv~LA~aL------------~~~p~lLlLDEP-t~~LD~~~~~~l~~~--L~~~~~tviivsHd~~~l~~~ 407 (718)
T PLN03073 344 TFSGGWRMRIALARAL------------FIEPDLLLLDEP-TNHLDLHAVLWLETY--LLKWPKTFIVVSHAREFLNTV 407 (718)
T ss_pred hCCHHHHHHHHHHHHH------------hcCCCEEEEECC-CCCCCHHHHHHHHHH--HHHcCCEEEEEECCHHHHHHh
Confidence 4567777777777777 445999999999 999999999999999 777789999999999998765
No 346
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.61 E-value=4.8e-16 Score=180.27 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=112.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|||+||+|||||+++|+|++.+..|.+...+.++..+. +...+ ++.+.|- .|.... ...+..+. +
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~-lF~gTI--reNI~~g~-~-- 580 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV-LFSGSV--RENIAYGL-T-- 580 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc-ccccCH--HHHHhcCC-C--
Confidence 3579999999999999999999999999998866555443221 11222 2223332 233221 11222221 1
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+..+++..++...+.- .|.. +-.... ..| ..+||||.|+..+||+++++
T Consensus 581 ~--~~~e~i~~al~~a~l~~~i~~-lp~G--------ldT~ig-e~G-~~LSGGQkQRlalARALl~~------------ 635 (711)
T TIGR00958 581 D--TPDEEIMAAAKAANAHDFIME-FPNG--------YDTEVG-EKG-SQLSGGQKQRIAIARALVRK------------ 635 (711)
T ss_pred C--CCHHHHHHHHHHcCCHHHHHh-CCCc--------cCCccc-CCC-CcCCHHHHHHHHHHHHHhcC------------
Confidence 0 113345556666555443321 1110 000111 122 23679999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhhh---hccCCCc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEET 579 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~ 579 (604)
|+++||||| |++||..+...+.+. ....++|+|+|||++..+...++ ...|...
T Consensus 636 p~ILILDEp-TSaLD~~te~~i~~~--~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 636 PRVLILDEA-TSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred CCEEEEEcc-ccccCHHHHHHHHHh--hccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 999999999 999999998888774 44457999999999998776654 3445444
No 347
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.61 E-value=9.2e-16 Score=175.92 Aligned_cols=180 Identities=16% Similarity=0.076 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-------cCC-eEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-------TDN-IRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-------~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.++|+|+||+|||||+++|+|+.++..|.+...+.+...... ... .++.+.+.++................
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 3699999999999999999999999988877655443322110 111 23334343221111111111000000
Q ss_pred ccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 440 PIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 440 ~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
... ..+....+..+++.+++... . ......+|+|+.++..+|++++.+
T Consensus 115 ~~~-~~~~~~~~~~~l~~lgl~~~--------------------~--~~~~~~LS~Gq~qrv~LAraL~~~--------- 162 (648)
T PRK10535 115 GLE-RKQRLLRAQELLQRLGLEDR--------------------V--EYQPSQLSGGQQQRVSIARALMNG--------- 162 (648)
T ss_pred CCC-HHHHHHHHHHHHHHCCChhh--------------------h--cCCcccCCHHHHHHHHHHHHHhcC---------
Confidence 000 00001112222222222111 0 111223578999999999999655
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcccCc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETEEDE 583 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~~~~ 583 (604)
|+++||||| |++||+.++..+.++ ..+.+.+.|+|+|||+++.+..+++. ++|.......
T Consensus 163 ---P~lLllDEP-~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 163 ---GQVILADEP-TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPP 226 (648)
T ss_pred ---CCEEEEECC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999 999999999999888 55555689999999999988765544 5566554433
No 348
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.61 E-value=9.6e-16 Score=173.75 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-+++|+|+||+|||||+++|+|+..+..|.+...+.++..+.. ...+ ++.+.|. .|+.. ....+..+. +
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~t--i~~Ni~~~~-~--- 439 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH-LFSAT--LRDNLLLAA-P--- 439 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch-hhccc--HHHHhhcCC-C---
Confidence 5799999999999999999999999999988665554433211 1122 2223332 22221 111121111 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...++..++...+.- |... -...+. .| ..+||||.|+..+||+++++ |
T Consensus 440 -~~~~~~i~~al~~~~l~~~i~~--p~Gl--------dT~vge-~g-~~LSgGqrqRialARall~~------------~ 494 (574)
T PRK11160 440 -NASDEALIEVLQQVGLEKLLED--DKGL--------NAWLGE-GG-RQLSGGEQRRLGIARALLHD------------A 494 (574)
T ss_pred -ccCHHHHHHHHHHcCCHHHHcC--cccc--------CchhcC-CC-CCCCHHHHHHHHHHHHHhcC------------C
Confidence 1123345556666666554432 3220 011111 12 23679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
+++||||| |++||..+...+.+. ..+. .+.|+|+|||++..+..++++ .+|...
T Consensus 495 ~ililDE~-ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~ 552 (574)
T PRK11160 495 PLLLLDEP-TEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQII 552 (574)
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEE
Confidence 99999999 999999998888877 3332 478999999999988766543 455544
No 349
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.61 E-value=7.2e-16 Score=174.70 Aligned_cols=175 Identities=14% Similarity=0.092 Sum_probs=110.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|+|+||+|||||+++|+|+..+..|.+...+.++..+.. ...+ ++.+.|.+ |.... ...+..+...
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-f~~Ti--~~Ni~~~~~~-- 432 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL-FNDTI--ANNIAYGRTE-- 432 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc-ccccH--HHHHhcCCCC--
Confidence 35799999999999999999999999999988666554432211 1122 23333322 22221 1111211100
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
......+..++..+++...+.- .|.+ +-.... ..| ..+||||.|+..+||+++++
T Consensus 433 --~~~~~~i~~~l~~~~l~~~i~~-lp~g--------ldt~i~-~~g-~~LSgGqrQRiaLARall~~------------ 487 (571)
T TIGR02203 433 --QADRAEIERALAAAYAQDFVDK-LPLG--------LDTPIG-ENG-VLLSGGQRQRLAIARALLKD------------ 487 (571)
T ss_pred --CCCHHHHHHHHHHcChHHHHHh-CcCc--------ccceec-CCC-CcCCHHHHHHHHHHHHHhcC------------
Confidence 1123445566666666544311 1111 000011 112 12679999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK 573 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~ 573 (604)
|++++|||| |++||..+...+.+. ..+ ..++|+|+|||+...+..+++.
T Consensus 488 ~~illLDEp-ts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~~~D~i 537 (571)
T TIGR02203 488 APILILDEA-TSALDNESERLVQAALERL-MQGRTTLVIAHRLSTIEKADRI 537 (571)
T ss_pred CCEEEEeCc-cccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHHHhCCEE
Confidence 999999999 999999998888777 332 2368999999999887766543
No 350
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.61 E-value=6.6e-16 Score=178.93 Aligned_cols=181 Identities=19% Similarity=0.163 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-+++|+|+||||||||+++|+|++.+..|.+...+.++..+.. ...+.++......|... ....+..+. +
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~T--I~eNi~~~~-~--- 564 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGT--LRDNIALGA-P--- 564 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhh--HHHHHhCCC-C---
Confidence 35799999999999999999999999999988665554433211 11222222111222221 111121111 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...+..+++...+.- .|.. +-.... ..| ..+||||.|+..+||+++++ |
T Consensus 565 -~~~~~~i~~a~~~~~l~~~i~~-lp~g--------l~T~i~-e~G-~~LSgGQrQRlalARall~~------------p 620 (694)
T TIGR03375 565 -YADDEEILRAAELAGVTEFVRR-HPDG--------LDMQIG-ERG-RSLSGGQRQAVALARALLRD------------P 620 (694)
T ss_pred -CCCHHHHHHHHHHcChHHHHHh-Cccc--------ccceec-CCC-CCCCHHHHHHHHHHHHHhcC------------C
Confidence 0123344455555555443321 1111 000111 122 23679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~ 579 (604)
+++||||| |++||..+...+.+. ..+. .+.|+|+|||++..+..+++ -.+|...
T Consensus 621 ~iliLDE~-Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~ 678 (694)
T TIGR03375 621 PILLLDEP-TSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678 (694)
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999 999999998888877 3332 37999999999998876653 3444443
No 351
>PRK01889 GTPase RsgA; Reviewed
Probab=99.60 E-value=6.4e-15 Score=156.93 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=101.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYN 271 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~ 271 (604)
++.++|.|++|+++. |.+ .+..|++|+.. ..+.+.||||||+||+++.. .+.+++....+++.++++|+.
T Consensus 109 iaANvD~vliV~s~~-p~~-~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~---- 180 (356)
T PRK01889 109 IAANVDTVFIVCSLN-HDF-NLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSAL---- 180 (356)
T ss_pred EEEeCCEEEEEEecC-CCC-ChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECC----
Confidence 478999999999996 432 23467788752 46788899999999997632 222333333446788888886
Q ss_pred cccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhh
Q psy3589 272 LRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELK 351 (604)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (604)
++.|+.+|...+..
T Consensus 181 ------------------------~g~gl~~L~~~L~~------------------------------------------ 194 (356)
T PRK01889 181 ------------------------DGEGLDVLAAWLSG------------------------------------------ 194 (356)
T ss_pred ------------------------CCccHHHHHHHhhc------------------------------------------
Confidence 34566665543311
Q ss_pred hhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCCCccC
Q psy3589 352 KVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
..+++|+|+||+|||||+|+|+|...+.+|.+.. +|.+.+...+.+...++|+||+..
T Consensus 195 ---------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 195 ---------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred ---------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence 1368999999999999999999999888887753 233345556677778999999854
Q ss_pred CC
Q psy3589 425 PS 426 (604)
Q Consensus 425 p~ 426 (604)
..
T Consensus 260 ~~ 261 (356)
T PRK01889 260 LQ 261 (356)
T ss_pred hc
Confidence 33
No 352
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.60 E-value=1e-15 Score=173.40 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|+|+||||||||+++|+|+..|..|.+...+.++..... ...+ ++.+.|.+ |+.. ....+..+. +
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~t--i~~Ni~~~~-~-- 414 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL-FSDT--VANNIALGR-P-- 414 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee-cccc--HHHHHhcCC-C--
Confidence 35799999999999999999999999999887554443322110 1112 22233322 2221 111222121 1
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+...+...++...+. ..|.. +..... ..| ..+||||.++..+||+++++
T Consensus 415 ~--~~~~~~~~~~~~~~l~~~i~-~lp~g--------l~t~~~-~~g-~~LSgGq~qRi~lARall~~------------ 469 (569)
T PRK10789 415 D--ATQQEIEHVARLASVHDDIL-RLPQG--------YDTEVG-ERG-VMLSGGQKQRISIARALLLN------------ 469 (569)
T ss_pred C--CCHHHHHHHHHHcCCHHHHH-hCcCc--------ccceec-CCC-CcCCHHHHHHHHHHHHHhcC------------
Confidence 0 11223334444444332211 01110 000011 112 23679999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR 572 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~ 572 (604)
|+++||||| |++||..+...+.+. ..+. .+.|+|+|||+...+..+++
T Consensus 470 ~~illlDEp-ts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~ 518 (569)
T PRK10789 470 AEILILDDA-LSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASE 518 (569)
T ss_pred CCEEEEECc-cccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCE
Confidence 999999999 999999998888877 3332 57999999999988776543
No 353
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.60 E-value=7.6e-16 Score=178.82 Aligned_cols=180 Identities=15% Similarity=0.084 Sum_probs=110.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-++||+|+||||||||+++|+|++.|+.|.+...+.++..+.. ...+ ++.+.|- .|+.. ....+..+..+
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~-lf~gT--I~eNi~l~~~~-- 574 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPY-IFSGS--ILENLLLGAKE-- 574 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCce-ehhHH--HHHHHhccCCC--
Confidence 35799999999999999999999999999988666554432211 1122 2222222 22221 11122222101
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
......+...+...++.+.+.- .|.. +-.... ..| ..+||||.|+..+||+++++
T Consensus 575 --~~~~~~i~~a~~~a~l~~~i~~-lp~g--------ldt~i~-e~G-~~LSgGQrQRialARall~~------------ 629 (708)
T TIGR01193 575 --NVSQDEIWAACEIAEIKDDIEN-MPLG--------YQTELS-EEG-SSISGGQKQRIALARALLTD------------ 629 (708)
T ss_pred --CCCHHHHHHHHHHhCCHHHHHh-cccc--------cCcEec-CCC-CCCCHHHHHHHHHHHHHhhC------------
Confidence 0112334445555444433210 1110 000011 122 23679999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEET 579 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~ 579 (604)
|++|||||| |++||..+...+.+. ..+ .++|+|+|||++..+...++ -.+|...
T Consensus 630 p~iliLDE~-Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 630 SKVLILDES-TSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCEEEEeCc-cccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 999999999 999999998888777 322 37899999999998876654 3455544
No 354
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.59 E-value=8.6e-16 Score=173.24 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=101.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeE-EecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIR-LCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~-l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|+|+||||||||+++|+|++.+..|.+...+.++.... +...+. +.+.+- .|+... ...
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-lf~~ti-------~~n---- 416 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH-LFDQLL-------GPE---- 416 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChh-HHHHhh-------ccc----
Confidence 3579999999999999999999999999888755444332211 011121 111111 111100 000
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
........+...++.+++...... +. . ...| ..+||||.|+..+||+++++
T Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~--~~------------~--~~~G-~~LSgGq~qRl~lARal~~~------------ 467 (547)
T PRK10522 417 GKPANPALVEKWLERLKMAHKLEL--ED------------G--RISN-LKLSKGQKKRLALLLALAEE------------ 467 (547)
T ss_pred cCchHHHHHHHHHHHcCCchhhhc--cc------------c--CCCC-CCCCHHHHHHHHHHHHHhcC------------
Confidence 000011122233333332211100 00 0 0012 23679999999999999776
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhhh---hhccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNVK---RKHKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~~ 580 (604)
|++|||||| |++||..+...+.+. .. ++..+.|+|+|||+...+..++ ...+|...+
T Consensus 468 ~~ililDE~-ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 468 RDILLLDEW-AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999998887665 22 2335899999999998766554 344555543
No 355
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.59 E-value=2.1e-15 Score=171.08 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-+++|+|+||+|||||+++|+|+..+..|.+...+.++..+.. ...+ ++.+.|. .|+... ...+..+. + .
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~-lf~~Ti--~~Ni~~~~-~--~ 440 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV-LFAASV--MENIRYGR-P--D 440 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc-cccccH--HHHHhcCC-C--C
Confidence 5799999999999999999999999988877554443322211 1122 2223332 233221 11122111 1 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+...++...+.. .|.... .... ..| ..+||||.|+..+||+++++ |
T Consensus 441 --~~~~~~~~~l~~~~l~~~i~~-l~~gl~--------t~i~-~~g-~~LSgGq~Qrl~laRal~~~------------~ 495 (576)
T TIGR02204 441 --ATDEEVEAAARAAHAHEFISA-LPEGYD--------TYLG-ERG-VTLSGGQRQRIAIARAILKD------------A 495 (576)
T ss_pred --CCHHHHHHHHHHcCcHHHHHh-CCCCCC--------ceeC-CCC-CcCCHHHHHHHHHHHHHHhC------------C
Confidence 123445556666655443321 111100 0000 112 23679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
+++||||| |++||..+...+.+. ..+. .+.|+|+|||+...+..+++. .+|+..
T Consensus 496 ~ililDEp-ts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~ 553 (576)
T TIGR02204 496 PILLLDEA-TSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIV 553 (576)
T ss_pred CeEEEeCc-ccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 99999999 999999998888776 3332 379999999999888766543 445444
No 356
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.58 E-value=1.9e-15 Score=175.03 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-+++|+|+||||||||+++|+|+..+..|.+...+.++..+.. ...+ ++.+.+- .|+... ...+..+. +
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~-lf~~ti--~eNi~~~~-~--- 556 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV-LFSRSI--RDNIALCN-P--- 556 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe-ehhhhH--HHHHhcCC-C---
Confidence 4799999999999999999999999999988666555433221 1122 2222222 222211 11111111 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...++..++...+.- .|.. +-.... ..| ..+||||.|+..+||+++++ |
T Consensus 557 -~~~~~~i~~a~~~~~l~~~i~~-lp~g--------l~t~i~-~~g-~~LSgGq~qri~lARall~~------------~ 612 (694)
T TIGR01846 557 -GAPFEHVIHAAKLAGAHDFISE-LPQG--------YNTEVG-EKG-ANLSGGQRQRIAIARALVGN------------P 612 (694)
T ss_pred -CCCHHHHHHHHHHcChHHHHHh-CcCc--------cCcEec-CCC-CCCCHHHHHHHHHHHHHHhC------------C
Confidence 0112344445555555443311 1110 000011 122 23679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~~ 580 (604)
+++||||| |++||..+...+.+. ..+ ..+.|+|+|||++..+..+++ -.+|...+
T Consensus 613 ~ililDEp-ts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 613 RILIFDEA-TSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671 (694)
T ss_pred CEEEEECC-CcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE
Confidence 99999999 999999998888877 333 247899999999998876643 44555543
No 357
>KOG0058|consensus
Probab=99.57 E-value=2.4e-15 Score=166.65 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
-+|+||||||+||||++++|..++.|+.|.+...+.++..+. +...+.++...-+.|.... ...+.-|..
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI--~eNI~YG~~----- 567 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI--RENIAYGLD----- 567 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH--HHHHhcCCC-----
Confidence 479999999999999999999999999999988777765542 2333433322222232221 222333322
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
....+.+...++..+-..++. ..|+. +-... -.+|. ++||||.|+.++||+|+++ |.
T Consensus 568 ~~t~e~i~~AAk~ANah~FI~-~~p~g--------Y~T~V-GEkG~-qLSGGQKQRIAIARALlr~------------P~ 624 (716)
T KOG0058|consen 568 NATDEEIEAAAKMANAHEFIT-NFPDG--------YNTVV-GEKGS-QLSGGQKQRIAIARALLRN------------PR 624 (716)
T ss_pred CCCHHHHHHHHHHhChHHHHH-hCccc--------ccccc-CCccc-cccchHHHHHHHHHHHhcC------------CC
Confidence 112334444455444333321 11111 00000 11332 3679999999999999887 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
||||||. |++||.++...+++. ..+ -.+.|||+|.|.+.-++..+
T Consensus 625 VLILDEA-TSALDaeSE~lVq~aL~~~-~~~rTVlvIAHRLSTV~~Ad 670 (716)
T KOG0058|consen 625 VLILDEA-TSALDAESEYLVQEALDRL-MQGRTVLVIAHRLSTVRHAD 670 (716)
T ss_pred EEEEech-hhhcchhhHHHHHHHHHHh-hcCCeEEEEehhhhHhhhcc
Confidence 9999999 999999998888877 222 23599999999999987664
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.1e-15 Score=140.37 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec--CC-eEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT--DN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~--~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-+-|.|+||+||||||++|+|+..|..|.+...+.+++...-. +. .++--.+|+-....+...+.....+...
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---- 105 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS---- 105 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC----
Confidence 3669999999999999999999999999876655544332110 00 0111112221100000011111000000
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+...+..+++..+ .....++ +|.||..+.++||.+ +.++++
T Consensus 106 ~~~~~i~~Al~~vgL~g~--------------------~dlp~~~--LSAGQqRRvAlArL~------------ls~~pL 151 (209)
T COG4133 106 GNAATIWEALAQVGLAGL--------------------EDLPVGQ--LSAGQQRRVALARLW------------LSPAPL 151 (209)
T ss_pred CchhhHHHHHHHcCcccc--------------------cccchhh--cchhHHHHHHHHHHH------------cCCCCc
Confidence 000111111122111111 0111233 458999999999988 445999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
.||||| +++||...+..|..+ ......|+.||++||..--+
T Consensus 152 WiLDEP-~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 152 WILDEP-FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred eeecCc-ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 999999 999999999999888 44556789999999986554
No 359
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.57 E-value=3e-15 Score=169.02 Aligned_cols=166 Identities=12% Similarity=0.050 Sum_probs=99.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+++|+|+||+|||||+++|+|...|+.|.+...+.++..+.. ...+ ++.+.+. .|...... ...+
T Consensus 368 G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-lf~~ti~~------n~~~-- 438 (555)
T TIGR01194 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH-LFDDLIGP------DEGE-- 438 (555)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChh-hhhhhhhc------cccc--
Confidence 35799999999999999999999999999987655443322110 0111 1111111 11110000 0000
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
......+..+++..++...+.. .|.... + ...+||||.++..+||+++++
T Consensus 439 --~~~~~~~~~~~~~~~l~~~~~~-lp~g~~--t-------------~~~LSgGq~qRlalaRall~~------------ 488 (555)
T TIGR01194 439 --HASLDNAQQYLQRLEIADKVKI-EDGGFS--T-------------TTALSTGQQKRLALICAWLED------------ 488 (555)
T ss_pred --chhHHHHHHHHHHcCCchhhcc-cccccC--C-------------cccCCHHHHHHHHHHHHHHcC------------
Confidence 0011223333444333222110 011000 0 023679999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-h-hhcCCCCeEEEEecChhhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-T-KEEPYKHPLVSVSDDEAEGKNVKR 572 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~-~l~~~g~tVIiVTHD~~e~~~~~~ 572 (604)
|+++||||| |++||..+...+.+. . .+...+.|+|+|||++..+...++
T Consensus 489 ~~ililDE~-ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 489 RPILLFDEW-AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred CCEEEEeCC-ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 999999999 999999998888653 2 234468999999999987665543
No 360
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.56 E-value=4.6e-14 Score=154.49 Aligned_cols=165 Identities=27% Similarity=0.343 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEE
Q psy3589 185 LETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCF 264 (604)
Q Consensus 185 le~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~ 264 (604)
..+.+|+...++.+|+||+|+|++.++......+.+++. ..++|+|+|+||+|+....... .+++... ...++++
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~-~~~~piilVvNK~D~~~~~~~~--~~~~~lg--~~~~~~v 140 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR-KSGKPVILVANKIDGKKEDAVA--AEFYSLG--FGEPIPI 140 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH-HhCCCEEEEEECccCCcccccH--HHHHhcC--CCCeEEE
Confidence 456788888999999999999999988777777888887 4579999999999998654322 2333222 2367888
Q ss_pred eeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhh
Q psy3589 265 TSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEV 344 (604)
Q Consensus 265 Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 344 (604)
||. ++.|+.+|++.+...++... .
T Consensus 141 Sa~----------------------------~g~gv~~ll~~i~~~l~~~~-----------------~----------- 164 (429)
T TIGR03594 141 SAE----------------------------HGRGIGDLLDAILELLPEEE-----------------E----------- 164 (429)
T ss_pred eCC----------------------------cCCChHHHHHHHHHhcCccc-----------------c-----------
Confidence 886 56788888887766432110 0
Q ss_pred hhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCC
Q psy3589 345 GETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPG 421 (604)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pG 421 (604)
......+.++++++|.+|||||||+|.|+|.....++.++|+|.......+ ...+.++||||
T Consensus 165 ---------------~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G 229 (429)
T TIGR03594 165 ---------------EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAG 229 (429)
T ss_pred ---------------cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCC
Confidence 000112457999999999999999999999876667788888876543222 33578899999
Q ss_pred ccCC
Q psy3589 422 LVFP 425 (604)
Q Consensus 422 l~~p 425 (604)
+.-.
T Consensus 230 ~~~~ 233 (429)
T TIGR03594 230 IRRK 233 (429)
T ss_pred cccc
Confidence 8543
No 361
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.56 E-value=4.1e-15 Score=168.45 Aligned_cols=181 Identities=17% Similarity=0.134 Sum_probs=111.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec---CCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT---DNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~---~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-++||||++|||||||+|+|+|++.+..|.+...+.++..+... ..+.++....+.|... ....+..|.-.
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~T--I~~NI~~g~~~--- 429 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGT--IRENIALGRPD--- 429 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeeccc--HHHHHhcCCCC---
Confidence 358999999999999999999999999999887655554443221 2222222111222211 11222222110
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+...+..+.+.-- |.. +-...+ .+|. .+||||.|+..+||+++++ |
T Consensus 430 --at~eei~~a~k~a~~~d~I~~l-p~g--------~dt~vg-e~G~-~LSgGQrQrlaiARall~~------------~ 484 (567)
T COG1132 430 --ATDEEIEEALKLANAHEFIANL-PDG--------YDTIVG-ERGV-NLSGGQRQRLAIARALLRN------------P 484 (567)
T ss_pred --CCHHHHHHHHHHhChHHHHHhC-ccc--------ccceec-CCCc-cCCHHHHHHHHHHHHHhcC------------C
Confidence 1123344444444333322111 211 000111 2232 2679999999999999887 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
++|+|||| |++||..+...+.+. ..+. .++|+|+|+|.+..+...+ .-.+|...
T Consensus 485 ~ILILDEa-TSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~ 542 (567)
T COG1132 485 PILILDEA-TSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIV 542 (567)
T ss_pred CEEEEecc-ccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEE
Confidence 99999999 999999998888877 3333 4579999999998877664 44555533
No 362
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=6.8e-14 Score=153.49 Aligned_cols=163 Identities=25% Similarity=0.292 Sum_probs=114.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEee
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
+.+|+...+..+|+||+|+|++.++......+..++. ..++|+|+|+||+|+..... ...+++...+ ..++++||
T Consensus 70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~-~~~~piilv~NK~D~~~~~~--~~~~~~~lg~--~~~~~iSa 144 (435)
T PRK00093 70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR-KSNKPVILVVNKVDGPDEEA--DAYEFYSLGL--GEPYPISA 144 (435)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH-HcCCcEEEEEECccCccchh--hHHHHHhcCC--CCCEEEEe
Confidence 3455667788999999999999988776677777776 45799999999999865322 2233433222 24678888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhh
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGE 346 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 346 (604)
. ++.|+.+|++.+....... +.
T Consensus 145 ~----------------------------~g~gv~~l~~~I~~~~~~~------------------~~------------ 166 (435)
T PRK00093 145 E----------------------------HGRGIGDLLDAILEELPEE------------------EE------------ 166 (435)
T ss_pred e----------------------------CCCCHHHHHHHHHhhCCcc------------------cc------------
Confidence 6 5677888887775421100 00
Q ss_pred hhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeEEecCCCcc
Q psy3589 347 TIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIRLCDCPGLV 423 (604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~l~D~pGl~ 423 (604)
.......++++|+|.+|||||||+|+|+|.....++..+|+|....... ....+.++||||+.
T Consensus 167 --------------~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~ 232 (435)
T PRK00093 167 --------------EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIR 232 (435)
T ss_pred --------------ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCC
Confidence 0001235899999999999999999999988777888899887654332 23457899999986
Q ss_pred CCC
Q psy3589 424 FPS 426 (604)
Q Consensus 424 ~p~ 426 (604)
...
T Consensus 233 ~~~ 235 (435)
T PRK00093 233 RKG 235 (435)
T ss_pred CCc
Confidence 443
No 363
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=5.1e-14 Score=155.87 Aligned_cols=162 Identities=23% Similarity=0.264 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
.+.+|....+..||+||+|+|++++.......+..++. ..++|+|||+||+|+..... ...+++...+. .++++|
T Consensus 106 ~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~-~~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~--~~~~iS 180 (472)
T PRK03003 106 SVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLR-RSGKPVILAANKVDDERGEA--DAAALWSLGLG--EPHPVS 180 (472)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH-HcCCCEEEEEECccCCccch--hhHHHHhcCCC--CeEEEE
Confidence 45567777899999999999999987665666767765 45799999999999965321 22233433332 346788
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
|. ++.|+.+|++.+...++... +.
T Consensus 181 A~----------------------------~g~gi~eL~~~i~~~l~~~~-----------------~~----------- 204 (472)
T PRK03003 181 AL----------------------------HGRGVGDLLDAVLAALPEVP-----------------RV----------- 204 (472)
T ss_pred cC----------------------------CCCCcHHHHHHHHhhccccc-----------------cc-----------
Confidence 86 56788888887765432100 00
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEe-cCCeEEecCCCc
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFL-TDNIRLCDCPGL 422 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~-~~~~~l~D~pGl 422 (604)
.......++|+|||.+|||||||+|.|+|.....++.++|+|.+... +.. ...+.++||||+
T Consensus 205 ---------------~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 205 ---------------GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGL 269 (472)
T ss_pred ---------------ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCc
Confidence 00011347999999999999999999999876667788888876532 222 234678999997
Q ss_pred c
Q psy3589 423 V 423 (604)
Q Consensus 423 ~ 423 (604)
.
T Consensus 270 ~ 270 (472)
T PRK03003 270 R 270 (472)
T ss_pred c
Confidence 4
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=6.3e-15 Score=144.98 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=54.1
Q ss_pred HHHHHHhhccce---ee---eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hh
Q psy3589 504 ANELLRMATEGR---IC---LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KR 572 (604)
Q Consensus 504 Ar~ll~dlSgG~---l~---al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~ 572 (604)
....++.||.|| |+ +...+|++||+||- .+.-|..-+..-.+. ..+.+.+.|||+||||++.+..+ +-
T Consensus 141 i~~PvktYSSGM~aRLaFsia~~~~pdILllDEv-lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~ 219 (249)
T COG1134 141 IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV-LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIW 219 (249)
T ss_pred hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh-hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEE
Confidence 344567778887 22 66789999999999 999997764443333 44545569999999999999877 33
Q ss_pred hccCCCcc
Q psy3589 573 KHKGEETE 580 (604)
Q Consensus 573 ~~~~~~~~ 580 (604)
-+.|....
T Consensus 220 l~~G~i~~ 227 (249)
T COG1134 220 LEHGQIRM 227 (249)
T ss_pred EeCCEEEE
Confidence 44554444
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.55 E-value=1.6e-14 Score=144.69 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=55.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCC--CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPP--QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP--~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
++|||+.++..+|++++.. | +++||||| |++||+..+..+.++ ..+.+.|.|||+||||++++.
T Consensus 137 ~LSgG~~qrv~laral~~~------------p~~~llllDEP-t~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~ 203 (226)
T cd03270 137 TLSGGEAQRIRLATQIGSG------------LTGVLYVLDEP-SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR 203 (226)
T ss_pred cCCHHHHHHHHHHHHHHhC------------CCCCEEEEeCC-ccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH
Confidence 4679999999999999555 5 69999999 999999999988887 555556899999999999875
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
..
T Consensus 204 ~~ 205 (226)
T cd03270 204 AA 205 (226)
T ss_pred hC
Confidence 33
No 366
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.55 E-value=4.4e-15 Score=182.68 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=58.3
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+||||.|+.++||+|+++ |++|||||| |++||..+...+.+. ..+. ..+.|+|+|||.+..+...
T Consensus 1359 LSGGQkQRIaIARALlr~------------p~ILLLDEa-TSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~a 1425 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLRE------------PKILLLDEA-TSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRS 1425 (1466)
T ss_pred CCHHHHHHHHHHHHHhcC------------CCEEEEeCc-ccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhC
Confidence 679999999999999887 999999999 999999998888776 3333 2479999999999988877
Q ss_pred hhh
Q psy3589 571 KRK 573 (604)
Q Consensus 571 ~~~ 573 (604)
+++
T Consensus 1426 D~I 1428 (1466)
T PTZ00265 1426 DKI 1428 (1466)
T ss_pred CEE
Confidence 543
No 367
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.2e-14 Score=135.10 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=57.0
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
-+||+.|+..+||.++.. |.++++||| |.+||+..+..|.++ .. ..+.+.++||||||+..+.-+
T Consensus 152 FSGGMqQRLQiARnLVt~------------PrLvfMDEP-TGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 152 FSGGMQQRLQIARNLVTR------------PRLVFMDEP-TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred cchHHHHHHHHHHHhccC------------CceEEecCC-CCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 369999999999999555 999999999 999999999888887 33 467799999999999998776
Q ss_pred h
Q psy3589 571 K 571 (604)
Q Consensus 571 ~ 571 (604)
.
T Consensus 219 a 219 (258)
T COG4107 219 A 219 (258)
T ss_pred h
Confidence 4
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.55 E-value=8.2e-15 Score=143.65 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=54.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++||+.++..+|++++.. ++.+|++++|||| |++||+.....+.++ ..+.+ +.|||+||||++++..
T Consensus 113 ~LS~G~kqrl~la~~l~~~--------~~~~~~illlDEP-~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~~ 181 (197)
T cd03278 113 LLSGGEKALTALALLFAIF--------RVRPSPFCVLDEV-DAALDDANVERFARLLKEFSK-ETQFIVITHRKGTMEA 181 (197)
T ss_pred hcCHHHHHHHHHHHHHHHh--------ccCCCCEEEEeCC-cccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHhh
Confidence 3578999999999988421 2356899999999 999999999998888 44443 6899999999988753
No 369
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.53 E-value=1e-14 Score=179.51 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=57.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+||||.|+..+||+++++ |++|||||| |++||..+...+.+. ..+.. .|.|+|+|||++..+..
T Consensus 579 ~LSGGQkQRiaIARAll~~------------P~ILlLDEp-TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 579 KLSGGQKQRISIARAIIRN------------PKILILDEA-TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCEEEEeCc-ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 4679999999999999777 999999999 999999999888877 44443 48999999999998865
Q ss_pred hh
Q psy3589 570 VK 571 (604)
Q Consensus 570 ~~ 571 (604)
.+
T Consensus 646 aD 647 (1466)
T PTZ00265 646 AN 647 (1466)
T ss_pred CC
Confidence 54
No 370
>KOG0927|consensus
Probab=99.53 E-value=1.8e-14 Score=154.25 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhccce-----ee-eecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCC-eEEEEecChhhhhhh
Q psy3589 501 YRAANELLRMATEGR-----IC-LCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKH-PLVSVSDDEAEGKNV 570 (604)
Q Consensus 501 ~~~Ar~ll~dlSgG~-----l~-al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~-tVIiVTHD~~e~~~~ 570 (604)
...+...+.+||||+ |+ +++..|++|||||| |||||++++.||.++ |.++.. ++|+++|+.+++..+
T Consensus 212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEP-tnhLDleA~~wLee~--L~k~d~~~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP-TNHLDLEAIVWLEEY--LAKYDRIILVIVSHSQDFLNGV 285 (614)
T ss_pred HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCC-ccCCCHHHHHHHHHH--HHhccCceEEEEecchhhhhhH
Confidence 344455556677776 22 66788999999999 999999999999999 888876 899999999988665
No 371
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.53 E-value=1.7e-14 Score=131.33 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=56.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~ 568 (604)
+++|||.-++.+.|+++.. |++++|||| ++.||...+..+.++ .++...|..+|+||||.+.+.
T Consensus 134 tlSGGQrARvaL~R~Lla~------------Pk~lLLDEP-FS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 134 TLSGGQRARVALLRALLAQ------------PKALLLDEP-FSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred hcCcchHHHHHHHHHHHhC------------cceeeeCCc-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 3579999899998998776 999999999 999999988888877 567888999999999998875
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.52 E-value=1.4e-14 Score=178.05 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCC---ccccCcCcccceeEEEEecCC-eEEecCCCccCCCCCChhhhHhhccc-ccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKV---VSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSF-PIA 442 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~---~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~-~i~ 442 (604)
-.+||+|+||||||||||+|+|+.. +..|.+...+..... ..... .++.+.+.+.+...+...+....... +.
T Consensus 790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~- 867 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK- 867 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC-
Confidence 3699999999999999999999986 455666444433211 01111 12222222221111111111111000 10
Q ss_pred ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcc--hhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 443 QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRS--YMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 443 ~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg--~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
... +....+..+++.+++..+.+ ...+ ...+|||+.++..+|++++.+
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~~~d--------------------~~v~~~~~~LSgGqrqRl~Ia~aL~~~-------- 919 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMESYAD--------------------AVVGVPGEGLNVEQRKRLTIGVELVAK-------- 919 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhCC--------------------CeeCCCCCCCCHHHhhHHHHHHHHHcC--------
Confidence 000 00112333333333322110 0111 003579999999999999666
Q ss_pred ecCCCC-cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 519 CLMPPQ-YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 519 l~~pP~-lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
|+ +|+|||| |++||..+...+.++ ++++..|.|||++||++..
T Consensus 920 ----P~~iLlLDEP-TsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 920 ----PKLLLFLDEP-TSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred ----CCeEEEEcCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 97 9999999 999999999988888 5565668999999999875
No 373
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-14 Score=140.49 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=58.4
Q ss_pred ccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh-
Q psy3589 494 KTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK- 571 (604)
Q Consensus 494 sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~- 571 (604)
|||+..+..++..+ +..|++.||||| .||||+.+...+.+. ..+++.+.++|+|||....+..+.
T Consensus 146 SGGEkKR~EilQ~~------------~lePkl~ILDE~-DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 146 SGGEKKRNEILQLL------------LLEPKLAILDEP-DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred CcchHHHHHHHHHH------------hcCCCEEEecCC-CcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCC
Confidence 46666666666655 667999999999 999999999888877 678888999999999988887772
Q ss_pred ----hhccCCCcc
Q psy3589 572 ----RKHKGEETE 580 (604)
Q Consensus 572 ----~~~~~~~~~ 580 (604)
.-.+|....
T Consensus 213 D~vhvl~~GrIv~ 225 (251)
T COG0396 213 DKVHVLYDGRIVK 225 (251)
T ss_pred CEEEEEECCEEEe
Confidence 334555554
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.51 E-value=2e-14 Score=176.28 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=54.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA 565 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~ 565 (604)
.+|||+.++..+|++|+.+ |++|+|||| |+|||..+...+.++ +.+.+.|.|||++||+..
T Consensus 1019 ~LSgGerkRvsIa~aL~~~------------P~lL~LDEP-TsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVAN------------PSIIFMDEP-TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhC------------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3679999999999999666 999999999 999999999888887 566667899999999987
No 375
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.51 E-value=2.1e-13 Score=158.04 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
.+-+|++..++.||+||+|+|++.++...+..+.+++. ..++|+|+|+||+|+....... .+++...+. .++++|
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr-~~~~pvIlV~NK~D~~~~~~~~--~~~~~lg~~--~~~~iS 417 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLR-RAGKPVVLAVNKIDDQASEYDA--AEFWKLGLG--EPYPIS 417 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH-hcCCCEEEEEECcccccchhhH--HHHHHcCCC--CeEEEE
Confidence 56788999999999999999999987766666777776 4689999999999997543221 233333332 356788
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
|. ++.|+.+|++.+...++... . .+
T Consensus 418 A~----------------------------~g~GI~eLl~~i~~~l~~~~------------------~--~~------- 442 (712)
T PRK09518 418 AM----------------------------HGRGVGDLLDEALDSLKVAE------------------K--TS------- 442 (712)
T ss_pred CC----------------------------CCCCchHHHHHHHHhccccc------------------c--cc-------
Confidence 86 66788899888766432100 0 00
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE---EecCCeEEecCCCc
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI---FLTDNIRLCDCPGL 422 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~---~~~~~~~l~D~pGl 422 (604)
.+. .....++|+|+|.+|||||||+|.|+|.....++..+|+|.+.... .-...+.++||||+
T Consensus 443 -----~a~---------~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~ 508 (712)
T PRK09518 443 -----GFL---------TPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGI 508 (712)
T ss_pred -----ccc---------CCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCc
Confidence 000 0123468999999999999999999998765567788888765322 22335678999997
Q ss_pred c
Q psy3589 423 V 423 (604)
Q Consensus 423 ~ 423 (604)
.
T Consensus 509 ~ 509 (712)
T PRK09518 509 K 509 (712)
T ss_pred c
Confidence 5
No 376
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.51 E-value=2.5e-14 Score=163.41 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=55.3
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh-hhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA-EGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~-e~~~ 569 (604)
+|||+.++..+|++++.+ |++++|||| |++||..+...+.+. +.+...|.|||+++|+.. ++..
T Consensus 167 LSgGqrkRvsia~aL~~~------------p~vlllDEP-tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~ 232 (617)
T TIGR00955 167 LSGGERKRLAFASELLTD------------PPLLFCDEP-TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFE 232 (617)
T ss_pred cCcchhhHHHHHHHHHcC------------CCEEEeeCC-CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHH
Confidence 679999999999999666 999999999 999999998888877 556666899999999985 4443
No 377
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=3.4e-15 Score=141.42 Aligned_cols=62 Identities=19% Similarity=0.093 Sum_probs=47.5
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh----hhccCCCccc
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK----RKHKGEETEE 581 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~----~~~~~~~~~~ 581 (604)
.+++.|.+|+|||| ++|+--+......++ +.+ ....+|++|.|||.++..+. .-|+|.--.+
T Consensus 161 ll~Q~P~lLLlDEP-vAGMTd~Et~~taeLl~~l-a~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 161 LLAQDPKLLLLDEP-VAGMTDAETEKTAELLKSL-AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred eeccCCcEEEecCc-cCCCcHHHHHHHHHHHHHH-hcCceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence 44677999999999 999997777776666 223 34689999999999998874 5566665543
No 378
>PLN03232 ABC transporter C family member; Provisional
Probab=99.50 E-value=1.4e-14 Score=179.55 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=115.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeE-EecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIR-LCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~-l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+|||||++|||||||+++|+|+..+..|.+...+.++..+.. ...+. +.+.|- .|+......+ .+..
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~-LF~gTIr~NL------~~~~ 1334 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV-LFSGTVRFNI------DPFS 1334 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCe-eeCccHHHHc------CCCC
Confidence 35899999999999999999999999999998777666544322 12232 233332 3332211111 1111
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+...++..++...+.- .|.. +-.... ..|. .+||||.|+..+||+++++
T Consensus 1335 ~--~sdeei~~al~~a~l~~~I~~-lp~G--------Ldt~v~-e~G~-~LSgGQrQrlaLARALLr~------------ 1389 (1495)
T PLN03232 1335 E--HNDADLWEALERAHIKDVIDR-NPFG--------LDAEVS-EGGE-NFSVGQRQLLSLARALLRR------------ 1389 (1495)
T ss_pred C--CCHHHHHHHHHHcCCHHHHHh-CcCC--------CCceec-CCCC-CCCHHHHHHHHHHHHHHhC------------
Confidence 1 123345555666655443311 1110 000011 1221 2579999999999999877
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
|++|||||| |++||.++...+++. ... -.++|||+|+|.+..+..++++ .+|...+
T Consensus 1390 ~~ILILDEA-TSaLD~~Te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1390 SKILVLDEA-TASVDVRTDSLIQRTIREE-FKSCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CCEEEEECC-cccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999998888887 222 2479999999999999887643 4455543
No 379
>PLN03130 ABC transporter C family member; Provisional
Probab=99.50 E-value=1.9e-14 Score=178.79 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=116.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeE-EecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIR-LCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~-l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+|||||++|||||||+++|+|++.+..|.+...+.++..+.. ...+. +.+.|- .|.......+ .+..
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~-LF~GTIreNL------d~~~ 1337 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV-LFSGTVRFNL------DPFN 1337 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCc-cccccHHHHh------CcCC
Confidence 35899999999999999999999999999998777766554422 12333 333333 3332211111 1111
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+...++.+++...+.- .|.. +-.... ..|. .+||||.|+..+||+++++
T Consensus 1338 ~--~tdeei~~Al~~a~l~~~I~~-lp~G--------Ldt~Vg-e~G~-nLSgGQrQrlaLARALLr~------------ 1392 (1622)
T PLN03130 1338 E--HNDADLWESLERAHLKDVIRR-NSLG--------LDAEVS-EAGE-NFSVGQRQLLSLARALLRR------------ 1392 (1622)
T ss_pred C--CCHHHHHHHHHHcCcHHHHHh-Cccc--------cCcccc-CCCC-CCCHHHHHHHHHHHHHHcC------------
Confidence 1 123445556666665544321 1111 000111 1222 2579999999999999877
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
|++|||||| |++||..+...+++. ... -.++|||+|+|++..+..++++ .+|...+
T Consensus 1393 p~ILILDEA-TSaLD~~Te~~Iq~~I~~~-~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1393 SKILVLDEA-TAAVDVRTDALIQKTIREE-FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999998888887 222 2479999999999999887644 4555443
No 380
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.50 E-value=3.5e-14 Score=176.26 Aligned_cols=179 Identities=20% Similarity=0.172 Sum_probs=116.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-+|||||++|||||||+++|+|++.+..|.+...+.++..+.. ...+.++....+.|.......+ -|...
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NL------dp~~~ 1385 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL------DPFSQ 1385 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHc------CcccC
Confidence 35899999999999999999999999999998877777655432 2233333222223332211111 11111
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...++.+++...+.- .|.. +-.... ..| ..+||||.|+..+||+++++ |
T Consensus 1386 --~sdeei~~al~~a~l~~~I~~-lp~G--------Ldt~v~-e~G-~~LSgGQrQrl~LARALLr~------------~ 1440 (1522)
T TIGR00957 1386 --YSDEEVWWALELAHLKTFVSA-LPDK--------LDHECA-EGG-ENLSVGQRQLVCLARALLRK------------T 1440 (1522)
T ss_pred --CCHHHHHHHHHHcCcHHHHhh-CccC--------CCceec-CCC-CcCCHHHHHHHHHHHHHHcC------------C
Confidence 123345556666665443311 1111 000011 122 12579999999999999877 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHhhhhcC--CCCeEEEEecChhhhhhhhhh---ccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQARTKEEP--YKHPLVSVSDDEAEGKNVKRK---HKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~~~l~~--~g~tVIiVTHD~~e~~~~~~~---~~~~~~ 579 (604)
++|||||| |++||.++...+++. +++ .++|||+|+|++..+...+++ .+|...
T Consensus 1441 ~ILiLDEa-TSalD~~Te~~Iq~~--l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1441 KILVLDEA-TAAVDLETDNLIQST--IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred CEEEEECC-cccCCHHHHHHHHHH--HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999998888887 332 478999999999999887643 344444
No 381
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.49 E-value=8.6e-14 Score=148.33 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE----------EecCCeEEecCCCccCCCCCChhhhHhhc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI----------FLTDNIRLCDCPGLVFPSKVPKPLQVLMG 437 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~----------~~~~~~~l~D~pGl~~p~~~~~~~~~l~g 437 (604)
--+|||||+|+|||||.++|.|..+|..|.+...+-++... |+.+++.++ +..... .+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF-------~GTIae--NIa-- 431 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF-------DGTIAE--NIA-- 431 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceec-------CCcHHH--HHH--
Confidence 35899999999999999999999999999876555443211 122222221 111111 110
Q ss_pred ccccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 438 SFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 438 ~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
.++.-.++.. +-..+..-+..+++ +..|...+ ...+ .+-.++||||.|+..+||++..+
T Consensus 432 --Rf~~~~d~~k-IieAA~lAgvHelI-l~lP~GYd--------T~iG--~~G~~LSgGQRQRIaLARAlYG~------- 490 (580)
T COG4618 432 --RFGEEADPEK-VIEAARLAGVHELI-LRLPQGYD--------TRIG--EGGATLSGGQRQRIALARALYGD------- 490 (580)
T ss_pred --hccccCCHHH-HHHHHHHcChHHHH-HhCcCCcc--------CccC--CCCCCCCchHHHHHHHHHHHcCC-------
Confidence 1111111111 11222222222221 12222110 0000 12234689999999999999666
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
|.+++|||| .++||.+.-..|.+. ..++..|+|+|+|||....+..++
T Consensus 491 -----P~lvVLDEP-NsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 491 -----PFLVVLDEP-NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred -----CcEEEecCC-CCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 999999999 999999988887776 677889999999999998876664
No 382
>PTZ00243 ABC transporter; Provisional
Probab=99.49 E-value=3.8e-14 Score=175.71 Aligned_cols=180 Identities=16% Similarity=0.131 Sum_probs=116.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeE-EecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIR-LCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~-l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+|||||++|||||||+++|+|++.+..|.+...+.++..+.. ...+. +.+.| +.|.......+ -+..
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp-~LF~gTIreNI------dp~~ 1408 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP-VLFDGTVRQNV------DPFL 1408 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC-ccccccHHHHh------Cccc
Confidence 35899999999999999999999999999998877776655432 22333 33333 33333221111 1111
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+...++.+++...+.- .|.. +-.... ..| ..+||||.|+..+||++++. +
T Consensus 1409 ~--~sdeeI~~Al~~a~l~~~I~~-lp~G--------ldt~vg-e~G-~nLSgGQrQrLaLARALL~~-----------~ 1464 (1560)
T PTZ00243 1409 E--ASSAEVWAALELVGLRERVAS-ESEG--------IDSRVL-EGG-SNYSVGQRQLMCMARALLKK-----------G 1464 (1560)
T ss_pred C--CCHHHHHHHHHHCCChHHHhh-Cccc--------cccccc-CCc-CcCCHHHHHHHHHHHHHhcC-----------C
Confidence 1 123455666666666544311 1111 000111 122 23679999999999999652 3
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhc--CCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEE--PYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~--~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
|++|||||| |++||..+...+++. +. -.++|||+|+|.+..+..++++ .+|...+
T Consensus 1465 ~~ILlLDEA-TSaLD~~te~~Iq~~--L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1465 SGFILMDEA-TANIDPALDRQIQAT--VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred CCEEEEeCC-CccCCHHHHHHHHHH--HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 899999999 999999998888877 32 2378999999999999887643 3454443
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.48 E-value=3.1e-14 Score=141.24 Aligned_cols=71 Identities=11% Similarity=-0.099 Sum_probs=57.4
Q ss_pred hhccCcccHHHHHHHHHHh-----hccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh
Q psy3589 492 TAKTGRYDSYRAANELLRM-----ATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA 565 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~d-----lSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~ 565 (604)
+.+||+.++..+|++++.. .++ .+|+++||||| |++||+.....+.++ ..+.+.+.|||+||||++
T Consensus 123 ~lS~G~~~r~~la~al~~~p~~~~~~~-------~~~~~lllDEp-~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 123 TLSGGETFLASLSLALALSEVLQNRGG-------ARLEALFIDEG-FGTLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred ccCHHHHHHHHHHHHHHhHHHhhhccC-------CCCCEEEEeCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 3579999999999999532 000 25899999999 999999999988877 555555889999999999
Q ss_pred hhhhh
Q psy3589 566 EGKNV 570 (604)
Q Consensus 566 e~~~~ 570 (604)
++..+
T Consensus 195 ~~~~~ 199 (213)
T cd03279 195 LKERI 199 (213)
T ss_pred HHHhh
Confidence 88766
No 384
>KOG0055|consensus
Probab=99.48 E-value=4.2e-14 Score=165.04 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=118.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
...++|||||+||||||++-+|-..+.|..|.+...+.++..+.+ ...+.++...-..|... -...++-|. .
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~T--IrENI~YG~---~ 1089 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGT--IRENIAYGS---E 1089 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhccc--HHHHHhccC---C
Confidence 346899999999999999999999999999998777766655433 33444443322223222 222334441 1
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. -....+...++..+...++ ...|+..+ ...+. +|. .+||||.||.++||+++++
T Consensus 1090 ~--vs~~eIi~Aak~ANaH~FI-~sLP~GyD--------T~vGe-rG~-QLSGGQKQRIAIARAilRn------------ 1144 (1228)
T KOG0055|consen 1090 E--VSEEEIIEAAKLANAHNFI-SSLPQGYD--------TRVGE-RGV-QLSGGQKQRIAIARAILRN------------ 1144 (1228)
T ss_pred C--CCHHHHHHHHHHhhhHHHH-hcCcCccc--------CccCc-ccC-cCCchHHHHHHHHHHHHcC------------
Confidence 1 1233333444443433332 11222100 01111 222 3579999999999999888
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
|++|||||. |++||.++-+.+++...-...|.|.|+|.|.+..++..+ ....|...
T Consensus 1145 PkILLLDEA-TSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1145 PKILLLDEA-TSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred CCeeeeecc-chhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEE
Confidence 999999999 999999999999988333345899999999999988764 34444443
No 385
>KOG0062|consensus
Probab=99.46 E-value=7.5e-14 Score=148.83 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=52.8
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+||||.-++.+|... +..|.+|+|||| |||||.+++..|... ++.+++.|||||||.+++..+
T Consensus 483 LSGGQKsrvafA~~~------------~~~PhlLVLDEP-TNhLD~dsl~AL~~A--l~~F~GGVv~VSHd~~fi~~~ 545 (582)
T KOG0062|consen 483 LSGGQKSRVAFAACT------------WNNPHLLVLDEP-TNHLDRDSLGALAKA--LKNFNGGVVLVSHDEEFISSL 545 (582)
T ss_pred cCCcchhHHHHHHHh------------cCCCcEEEecCC-CccccHHHHHHHHHH--HHhcCCcEEEEECcHHHHhhc
Confidence 455555555555444 677999999999 999999999999999 999999999999999998766
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.45 E-value=9.1e-14 Score=172.16 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=110.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEE-ecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRL-CDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l-~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-+|||||++|||||||+++|+|+.. ..|.+...+.++..+.. ...+.+ .+.|- .|+......+ -|..
T Consensus 1245 GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~-LF~GTIR~NL------dp~~ 1316 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF-IFSGTFRKNL------DPYE 1316 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc-cCccCHHHHh------Cccc
Confidence 35899999999999999999999987 67887766666544322 223333 33333 3333222111 1111
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
. .....+..+++.+++...+.- .|.. ++..-...|. .+||||.|+..+||+++++
T Consensus 1317 ~--~tdeei~~aL~~~~L~~~i~~-lp~G---------Ldt~v~e~G~-nLSgGQrQrL~LARALLr~------------ 1371 (1490)
T TIGR01271 1317 Q--WSDEEIWKVAEEVGLKSVIEQ-FPDK---------LDFVLVDGGY-VLSNGHKQLMCLARSILSK------------ 1371 (1490)
T ss_pred C--CCHHHHHHHHHHCCCHHHHHh-Cccc---------cccccccCCC-cCCHHHHHHHHHHHHHhCC------------
Confidence 1 123445566666666544311 1110 1111111222 2579999999999999776
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR 572 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~ 572 (604)
|++|||||| |++||..+...+++. ... -.++|||+|||.+..+..+++
T Consensus 1372 ~~ILlLDEa-TS~lD~~Te~~I~~~L~~~-~~~~TvI~IaHRl~ti~~~Dr 1420 (1490)
T TIGR01271 1372 AKILLLDEP-SAHLDPVTLQIIRKTLKQS-FSNCTVILSEHRVEALLECQQ 1420 (1490)
T ss_pred CCEEEEeCC-cccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCE
Confidence 999999999 999999998888877 222 237999999999998887753
No 387
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.45 E-value=3.5e-14 Score=132.32 Aligned_cols=46 Identities=15% Similarity=-0.017 Sum_probs=39.9
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..+||+||| .++||+.....|..+ ..+...|.+|||++||++...+
T Consensus 151 ~~LLllDEP-~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLr 197 (248)
T COG4138 151 GQLLLLDEP-MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLR 197 (248)
T ss_pred ceeEEecCC-CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHH
Confidence 358999999 999999998888887 6678889999999999987643
No 388
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.45 E-value=3e-13 Score=167.63 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+|||||||||++|+|+.++..|.+...+ .-.++.+.|.+ ++. .....++.+. +.+
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------~iayv~Q~~~l-~~~--Ti~eNI~~g~-~~~----- 514 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------RISFSPQTSWI-MPG--TIKDNIIFGL-SYD----- 514 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------EEEEEeCCCcc-CCc--cHHHHHHhcc-ccc-----
Confidence 46999999999999999999999999888764322 11233344433 222 2222333331 111
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
......++..+.+...+... |.. .....+. +| ..+||||.++..+||+++.+ |+++|
T Consensus 515 ~~~~~~~~~~~~L~~~l~~l-~~g--------~~t~vg~-~g-~~LSgGqkqRi~lARAl~~~------------~~ill 571 (1490)
T TIGR01271 515 EYRYTSVIKACQLEEDIALF-PEK--------DKTVLGE-GG-ITLSGGQRARISLARAVYKD------------ADLYL 571 (1490)
T ss_pred hHHHHHHHHHHhHHHHHHhc-ccc--------ccccccC-cC-CCcCHHHHHHHHHHHHHHcC------------CCEEE
Confidence 01122223333332221110 000 0000111 12 24679999999999999666 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| +++||......+.+. ..+. .+.|||+|||++..+...
T Consensus 572 LDep-~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~a 614 (1490)
T TIGR01271 572 LDSP-FTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKA 614 (1490)
T ss_pred EeCC-cccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhC
Confidence 9999 999999998888763 2332 389999999999887644
No 389
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=1.5e-13 Score=139.86 Aligned_cols=69 Identities=14% Similarity=0.040 Sum_probs=54.0
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+++|+.++..+|+++... ++.+|+++|+||| |++||+..+..+.++ ..+. .|.|||+|||+.+.....
T Consensus 166 ~lS~G~~qr~~la~al~~~--------~~~~~~illlDEP-t~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 166 ELSGGQRSLVALSLILALL--------LFKPAPMYILDEV-DAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNA 235 (251)
T ss_pred ccCHHHHHHHHHHHHHHHh--------hccCCCEEEEeCC-CcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhC
Confidence 3568999999999988431 2356899999999 999999999999887 4443 478999999996555443
No 390
>KOG0061|consensus
Probab=99.44 E-value=1.8e-13 Score=155.44 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=100.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCc---cccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhccccccc--
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVV---SVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ-- 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~---~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~-- 443 (604)
-.||+||+|||||||||+|+|.... ..|.+...++............++......+|.....+...+.+.+....
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~ 137 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL 137 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC
Confidence 4899999999999999999999864 33444333321111111112222222233344433232222333222221
Q ss_pred -ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 444 -LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 444 -l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
..+....++.++..+++..+.+.. ...... +| .+||+..|..+|..++.+
T Consensus 138 ~~~~k~~~V~~vi~~LgL~~~~~t~-------------ig~~~~-rg---iSGGErkRvsia~Ell~~------------ 188 (613)
T KOG0061|consen 138 SKEEKRERVEEVISELGLEKCADTL-------------IGNPGI-RG---LSGGERKRVSIALELLTD------------ 188 (613)
T ss_pred CHHHHHHHHHHHHHHcCChhhccce-------------ecCCCC-Cc---cccchhhHHHHHHHHHcC------------
Confidence 112233455555555544322100 000000 22 579999999999999777
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA 565 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~ 565 (604)
|.+|+|||| |+|||..+...+.+. +.+++.|+|||++-|...
T Consensus 189 P~iLflDEP-TSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 189 PSILFLDEP-TSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred CCEEEecCC-CCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 999999999 999998887777777 667767999999999864
No 391
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.43 E-value=1.7e-13 Score=168.62 Aligned_cols=65 Identities=8% Similarity=-0.036 Sum_probs=55.4
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecCh-hhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDE-AEGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~-~e~~~ 569 (604)
+|||+.++..+|++++.+ |++++|||| |++||..+...+.+. +.+.+ .|.|||+++|+. .++.+
T Consensus 210 LSGGerkRvsIA~aL~~~------------p~vlllDEP-TsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~ 276 (1394)
T TIGR00956 210 VSGGERKRVSIAEASLGG------------AKIQCWDNA-TRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYE 276 (1394)
T ss_pred CCcccchHHHHHHHHHhC------------CCEEEEeCC-CCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH
Confidence 579999999999999776 999999999 999999998888887 55554 489999999996 56654
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 277 l 277 (1394)
T TIGR00956 277 L 277 (1394)
T ss_pred h
Confidence 3
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.43 E-value=4.8e-13 Score=135.82 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=54.4
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+++|+.++..+|++++.. .+.+|+++||||| |++||+.....+.++ ..+...|.+||+|||+.+.+...
T Consensus 156 LS~G~k~rl~la~al~~~--------~~~~p~~lllDEP-t~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~ 225 (247)
T cd03275 156 LSGGEKTMAALALLFAIH--------SYQPAPFFVLDEV-DAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKA 225 (247)
T ss_pred cCHHHHHHHHHHHHHHHh--------ccCCCCEEEEecc-cccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhC
Confidence 568888888888887443 1246999999999 999999999988887 55555588999999997765433
No 393
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.43 E-value=8.1e-14 Score=140.80 Aligned_cols=68 Identities=9% Similarity=-0.053 Sum_probs=51.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
..+||+.++..+|++++.. ...+|+++|+||| |++||+.....+.+. ..+.+ +.+||++||+.+ +..+
T Consensus 158 ~lS~G~~~r~~la~~l~~~--------~~~~~~illlDEp-~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~ 226 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQ--------KCDPAPFYLFDEI-DAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEV 226 (243)
T ss_pred ccCHHHHHHHHHHHHHHHh--------ccCCCCEEEEECC-ccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhh
Confidence 4578999999999988431 1246899999999 999999999888887 44433 677787777754 4443
No 394
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.42 E-value=4.3e-13 Score=139.37 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=56.6
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.|++.+|.+++++ |++||.||| |.+||+..+..+.++ +.+ ++.|+++++||||+..+..+
T Consensus 158 LSGGqRQRVMIAMALan~------------P~lLIADEP-TTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 158 LSGGQRQRVMIAMALANE------------PDLLIADEP-TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKF 224 (534)
T ss_pred cCcchhhHHHHHHHHcCC------------CCeEeecCC-cchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHh
Confidence 468888888888888555 999999999 999999998888887 444 45699999999999999888
Q ss_pred h
Q psy3589 571 K 571 (604)
Q Consensus 571 ~ 571 (604)
.
T Consensus 225 A 225 (534)
T COG4172 225 A 225 (534)
T ss_pred h
Confidence 4
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.42 E-value=2.2e-13 Score=134.34 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=51.9
Q ss_pred hhccCcccHH------HHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHH-HHHHh-hhhcCC-CCeEEEEec
Q psy3589 492 TAKTGRYDSY------RAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEIL-WIQAR-TKEEPY-KHPLVSVSD 562 (604)
Q Consensus 492 s~sGG~~d~~------~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~-~L~~~-~~l~~~-g~tVIiVTH 562 (604)
.+++|+.++. .+|+++ +.+|+++++||| +++||+..+. .+.++ ..+.+. +.|||+|||
T Consensus 115 ~LS~G~~~~~~la~rlala~al------------~~~p~illlDEP-~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH 181 (204)
T cd03240 115 RCSGGEKVLASLIIRLALAETF------------GSNCGILALDEP-TTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181 (204)
T ss_pred ccCccHHHHHHHHHHHHHHHHh------------ccCCCEEEEcCC-ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 3568988864 344444 556999999999 9999999988 88887 445444 789999999
Q ss_pred Chhhhhhhh
Q psy3589 563 DEAEGKNVK 571 (604)
Q Consensus 563 D~~e~~~~~ 571 (604)
+++.+..+.
T Consensus 182 ~~~~~~~~d 190 (204)
T cd03240 182 DEELVDAAD 190 (204)
T ss_pred cHHHHhhCC
Confidence 998875543
No 396
>PTZ00243 ABC transporter; Provisional
Probab=99.42 E-value=6.1e-13 Score=165.15 Aligned_cols=160 Identities=9% Similarity=-0.046 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-eEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-.++|+|+|||||||||++|+|...+..|.+.. ... .++.+.|.+ +.. .....+..+. +.
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~----------~~~i~yv~Q~~~l-~~~--Tv~enI~~~~-~~----- 747 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA----------ERSIAYVPQQAWI-MNA--TVRGNILFFD-EE----- 747 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE----------CCeEEEEeCCCcc-CCC--cHHHHHHcCC-hh-----
Confidence 369999999999999999999999988776532 122 233344443 221 2222222211 10
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+...+..+.+...+.. .|. .+...... + ...+||||.++..+||+++.+ |+++
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~-l~~--------g~~t~i~~-~-g~~LSGGQkqRvaLARAl~~~------------p~il 804 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQ-LGG--------GLETEIGE-K-GVNLSGGQKARVSLARAVYAN------------RDVY 804 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHH-hhc--------cchHHhcC-C-CCCCCHHHHHHHHHHHHHhcC------------CCEE
Confidence 01112222333332221110 000 11111122 2 234679999999999999666 9999
Q ss_pred cccCCCcCCCCHHHHHHHHH-hhhhcCCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQA-RTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~-~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |++||+.....+.. .......|.|+|+||||++.+...
T Consensus 805 lLDEP-~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~a 848 (1560)
T PTZ00243 805 LLDDP-LSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA 848 (1560)
T ss_pred EEcCc-cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence 99999 99999987666654 211112478999999999987654
No 397
>PLN03232 ABC transporter C family member; Provisional
Probab=99.41 E-value=4.7e-13 Score=166.05 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeE-EecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIR-LCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~-l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-+++|+|++|||||||+++|+|...+..|.+. .+...+. +.+.|.+ |... ....++.|. +.
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------~~~~~Iayv~Q~p~L-f~gT--IreNI~fg~-~~----- 705 (1495)
T PLN03232 644 SLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------VIRGSVAYVPQVSWI-FNAT--VRENILFGS-DF----- 705 (1495)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------EecCcEEEEcCcccc-cccc--HHHHhhcCC-cc-----
Confidence 47999999999999999999999998776542 1222332 2333333 2222 222333332 11
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..+++.+.+...+. ..|.... ...+ .+|. .+||||.+|..+||+++++ |+++
T Consensus 706 ~~e~~~~vl~~~~L~~di~-~Lp~Gd~--------T~IG-e~G~-~LSGGQkQRIaLARAly~~------------~~Il 762 (1495)
T PLN03232 706 ESERYWRAIDVTALQHDLD-LLPGRDL--------TEIG-ERGV-NISGGQKQRVSMARAVYSN------------SDIY 762 (1495)
T ss_pred CHHHHHHHHHHhCCHHHHH-hCCCCCC--------ceec-CCCc-ccCHHHHHHHHHHHHHhcC------------CCEE
Confidence 1233444555555543321 1122110 0111 1232 3679999999999999776 9999
Q ss_pred cccCCCcCCCCHHHHHHHH-HhhhhcCCCCeEEEEecChhhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQ-ARTKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~-~~~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
||||| |++||......+. ......-.++|+|+|||++..+...+
T Consensus 763 LLDEp-tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD 807 (1495)
T PLN03232 763 IFDDP-LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMD 807 (1495)
T ss_pred EEcCC-ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCC
Confidence 99999 9999988866554 43111124789999999998776553
No 398
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.41 E-value=5.5e-13 Score=125.18 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=103.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.-++|+||.||||||||.++|+|...|+.|.+...+..+.... ....+ .+++.|.-.+.... ..-+++.+-+...
T Consensus 39 ~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl-~iGqiLd~PL~l~ 117 (267)
T COG4167 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL-RIGQILDFPLRLN 117 (267)
T ss_pred CcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh-hhhhHhcchhhhc
Confidence 3589999999999999999999999999999876665543211 11122 12222322221110 0011222211111
Q ss_pred cccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHH-hcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 443 QLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQ-KRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 443 ~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~-~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.-.++......+.+.+.+..++ |+ ++. .... ++.|+.|++++||+++-+
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~----Pd-------------han~~~~~--la~~QKQRVaLARALIL~----------- 167 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLL----PD-------------HANYYPHM--LAPGQKQRVALARALILR----------- 167 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccC----cc-------------ccccchhh--cCchhHHHHHHHHHHhcC-----------
Confidence 1111111112222211111111 11 010 1112 347899999999999555
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~~ 571 (604)
|.++|.||. .++||...+..+.++ ..+. +.|.+.|.|+.++..+.++.
T Consensus 168 -P~iIIaDeA-l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~ 217 (267)
T COG4167 168 -PKIIIADEA-LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHIS 217 (267)
T ss_pred -CcEEEehhh-hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhc
Confidence 999999999 999999998888887 5554 46999999999999998874
No 399
>PLN03130 ABC transporter C family member; Provisional
Probab=99.39 E-value=4e-13 Score=167.05 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecCCeEE-ecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTDNIRL-CDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~~~~l-~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|||++|||||||+++|+|...+.. |.+. +...+.+ .+.|.+ |... ....++.|. +.
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~----------l~~~Iayv~Q~p~L-fngT--IreNI~fg~-~~---- 705 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAMLGELPPRSDASVV----------IRGTVAYVPQVSWI-FNAT--VRDNILFGS-PF---- 705 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhccCCCceEE----------EcCeEEEEcCcccc-CCCC--HHHHHhCCC-cc----
Confidence 4699999999999999999999999887 6543 1222322 233333 2222 222333331 11
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
....+..+++.+.+...+.. .|... ....+ .+|. .+||||.+|..+||+++++ |++
T Consensus 706 -d~e~y~~vl~a~~L~~di~~-LP~Gd--------~T~IG-e~G~-~LSGGQKQRIaLARAly~~------------~~I 761 (1622)
T PLN03130 706 -DPERYERAIDVTALQHDLDL-LPGGD--------LTEIG-ERGV-NISGGQKQRVSMARAVYSN------------SDV 761 (1622)
T ss_pred -cHHHHHHHHHHhCcHHHHHh-CCCcc--------ccccc-CCCC-CCCHHHHHHHHHHHHHhCC------------CCE
Confidence 12344556666665443221 12110 01111 1232 3679999999999999776 999
Q ss_pred ccccCCCcCCCCHHHHHHH-HHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 526 LSKQEYWEKHPDIDEILWI-QAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L-~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+||||| |++||......+ ... ..+ -.++|+|+|||++..+...+
T Consensus 762 lLLDEp-tSALD~~~~~~I~~~~l~~~-l~~kTvIlVTH~l~~l~~aD 807 (1622)
T PLN03130 762 YIFDDP-LSALDAHVGRQVFDKCIKDE-LRGKTRVLVTNQLHFLSQVD 807 (1622)
T ss_pred EEECCC-ccccCHHHHHHHHHHHhhHH-hcCCEEEEEECCHhHHHhCC
Confidence 999999 999999876655 344 212 14799999999998776553
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.39 E-value=1.2e-12 Score=137.85 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+|++||||-|||||+++|+|.+.|+.|.. . ++ .+...+ ..+.+.+.....+.+....+.. ....
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~~--~--~~-~vSyKP--------QyI~~~~~gtV~~~l~~~~~~~-~~~s 433 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGSE--E--DL-KVSYKP--------QYISPDYDGTVEDLLRSAIRSA-FGSS 433 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhccccCCCCCC--c--cc-eEeecc--------eeecCCCCCcHHHHHHHhhhhh-cccc
Confidence 3589999999999999999999999988761 1 11 111122 2222222211122222221110 0000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
.....++..+++..+ +.+.. -.+|||+.|+.++|-+|.++ +++.+
T Consensus 434 -~~~~ei~~pl~l~~i--------------------~e~~v--~~LSGGELQRvaIaa~L~re------------ADlYl 478 (591)
T COG1245 434 -YFKTEIVKPLNLEDL--------------------LERPV--DELSGGELQRVAIAAALSRE------------ADLYL 478 (591)
T ss_pred -hhHHhhcCccchHHH--------------------Hhccc--ccCCchhHHHHHHHHHhccc------------cCEEE
Confidence 011122222222222 11222 23579999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| +++||.+.+...... +. +.+.+.|.++|.||+..+..+
T Consensus 479 lDEP-SA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 479 LDEP-SAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred ecCc-hhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh
Confidence 9999 999998887666655 22 556689999999999988766
No 401
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.39 E-value=7.9e-13 Score=164.33 Aligned_cols=161 Identities=15% Similarity=0.084 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||||||||+++|+|..++..|.+...+ .. .++.+.|.+ +.. .....+..+. +.+
T Consensus 665 ~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---~i------~yv~Q~~~l-~~~--Ti~eNI~~g~-~~~----- 726 (1522)
T TIGR00957 665 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---SV------AYVPQQAWI-QND--SLRENILFGK-ALN----- 726 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---EE------EEEcCCccc-cCC--cHHHHhhcCC-ccC-----
Confidence 46899999999999999999999999888654322 11 122333433 221 1222222221 111
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
......++..+.+...+... |... ..... .+| ..+||||.++..+||+++.+ |+++|
T Consensus 727 ~~~~~~~~~~~~l~~~l~~~-~~g~--------~t~ig-~~g-~~LSGGQkqRiaLARAl~~~------------~~ill 783 (1522)
T TIGR00957 727 EKYYQQVLEACALLPDLEIL-PSGD--------RTEIG-EKG-VNLSGGQKQRVSLARAVYSN------------ADIYL 783 (1522)
T ss_pred HHHHHHHHHHhCCHHHHHhc-CCCC--------Cceec-CCC-CCCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 11222233333332221110 1100 00011 122 24679999999999999665 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhh--cCCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKE--EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l--~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||......+.+. ... ...+.|+|+|||++..+...
T Consensus 784 LDEp-~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 784 FDDP-LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred EcCC-ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 9999 999999998888776 211 12468999999999887655
No 402
>KOG0059|consensus
Probab=99.39 E-value=5.3e-13 Score=157.76 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=51.7
Q ss_pred ccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 494 KTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 494 sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+||...+...|-++ +-.|.+++|||| |+|+|+.+++.+.++ ..+++.|.+||++||.++|++.+
T Consensus 700 SgG~kRkLs~aial------------ig~p~vi~LDEP-stGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaL 764 (885)
T KOG0059|consen 700 SGGNKRRLSFAIAL------------IGDPSVILLDEP-STGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEAL 764 (885)
T ss_pred CCcchhhHHHHHHH------------hcCCCEEEecCC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHH
Confidence 35555555555555 455999999999 999999999999998 56666666999999999999877
No 403
>PLN03140 ABC transporter G family member; Provisional
Probab=99.38 E-value=4.9e-13 Score=164.25 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=50.5
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecCh-hhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDE-AEGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~-~e~~~ 569 (604)
.|||+.++..+|+++ +.+|++++|||| |+|||..+...+.+. +.+.+ .|.|||+++|+. .++..
T Consensus 337 lSGGerkRVsia~aL------------~~~p~vlllDEP-TsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~ 403 (1470)
T PLN03140 337 ISGGQKKRVTTGEMI------------VGPTKTLFMDEI-STGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFD 403 (1470)
T ss_pred CCcccceeeeehhhh------------cCCCcEEEEeCC-CcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH
Confidence 456777777666666 555999999999 999999998888877 55544 588999999986 46554
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 404 l 404 (1470)
T PLN03140 404 L 404 (1470)
T ss_pred H
Confidence 4
No 404
>KOG0056|consensus
Probab=99.38 E-value=1.6e-13 Score=144.94 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=106.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
..++++|||+|+||||+|++|.......+|.+...+.++..+... .+....|++.+..+--..-++-. ........
T Consensus 564 GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~---SLRs~IGVVPQDtvLFNdTI~yN-Iryak~~A 639 (790)
T KOG0056|consen 564 GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQS---SLRSSIGVVPQDTVLFNDTILYN-IRYAKPSA 639 (790)
T ss_pred CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHH---HHHHhcCcccCcceeecceeeeh-eeecCCCC
Confidence 468999999999999999999999999999887666554332111 01111222221110000000000 00000011
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
..+.+...++...+.+.+ +..|+. .-... -.||. .+|||+.|++++||.++++ |.++
T Consensus 640 sneevyaAAkAA~IHdrI-l~fPeg--------Y~t~V-GERGL-kLSGGEKQRVAiARtiLK~------------P~iI 696 (790)
T KOG0056|consen 640 SNEEVYAAAKAAQIHDRI-LQFPEG--------YNTRV-GERGL-KLSGGEKQRVAIARTILKA------------PSII 696 (790)
T ss_pred ChHHHHHHHHHhhHHHHH-hcCchh--------hhhhh-hhccc-ccCCcchhhHHHHHHHhcC------------CcEE
Confidence 111122222221221111 011111 11111 12453 3789999999999999888 9999
Q ss_pred cccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh---hhhccCCCcc
Q psy3589 527 SKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV---KRKHKGEETE 580 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~---~~~~~~~~~~ 580 (604)
+|||. |++||..+.+.++.. .++ ..+.|.|+|.|.+.-+... ....+|.+.+
T Consensus 697 lLDEA-TSALDT~tER~IQaaL~rl-ca~RTtIVvAHRLSTivnAD~ILvi~~G~IvE 752 (790)
T KOG0056|consen 697 LLDEA-TSALDTNTERAIQAALARL-CANRTTIVVAHRLSTIVNADLILVISNGRIVE 752 (790)
T ss_pred EEcch-hhhcCCccHHHHHHHHHHH-hcCCceEEEeeeehheecccEEEEEeCCeEee
Confidence 99999 999998888888877 222 3478999999999876443 3555555544
No 405
>KOG0066|consensus
Probab=99.37 E-value=7.6e-13 Score=138.06 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=53.3
Q ss_pred HHHhhccce-----ee-eecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 507 LLRMATEGR-----IC-LCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 507 ll~dlSgG~-----l~-al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
....||||+ ++ +++..|-+|+|||| |||||+..+.||.++ |..|..|++|||||..++..+
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEP-TNHLDLNAVIWLdNY--LQgWkKTLLIVSHDQgFLD~V 475 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEP-TNHLDLNAVIWLDNY--LQGWKKTLLIVSHDQGFLDSV 475 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCC-ccccccceeeehhhH--HhhhhheeEEEecccchHHHH
Confidence 345678887 22 77889999999999 999999999999999 999999999999999887655
No 406
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.35 E-value=2.2e-12 Score=131.46 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=57.5
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.++..+|++++.. ..+|+++||||| |++||+..+..+.++ ..+.+.|.|||+||||++++..
T Consensus 168 ~~LSgGe~QRl~LAraL~~~---------~~~p~lllLDEP-tsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKR---------STGKTLYILDEP-TTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcC---------CCCCcEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 34678888888888888543 113899999999 999999999998888 5566678999999999998865
Q ss_pred hh
Q psy3589 570 VK 571 (604)
Q Consensus 570 ~~ 571 (604)
..
T Consensus 238 aD 239 (261)
T cd03271 238 AD 239 (261)
T ss_pred CC
Confidence 43
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.33 E-value=6.4e-12 Score=139.15 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+.|.|+||||||||+++|+|+-+...|.+... .+...+++++. | ++|.- .-...+ ++|...-.-.
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-~~~~~lflpQ~------P--Y~p~G-tLre~l---~YP~~~~~~~ 486 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-ADSALLFLPQR------P--YLPQG-TLREAL---CYPNAAPDFS 486 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCccCCCceecC-CCCceEEecCC------C--CCCCc-cHHHHH---hCCCCCCCCC
Confidence 4688999999999999999999998877765322 22122333332 2 12221 111111 2333321123
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++..+..- .+-...|.+ .+++|++|+.+.||.+++. |++++
T Consensus 487 d~~l~~vL~~vgL~~L~~r-----------l~~~~~W~~-----vLS~GEqQRlafARilL~k------------P~~v~ 538 (604)
T COG4178 487 DAELVAVLHKVGLGDLAER-----------LDEEDRWDR-----VLSGGEQQRLAFARLLLHK------------PKWVF 538 (604)
T ss_pred hHHHHHHHHHcCcHHHHHH-----------HhccCcHhh-----hcChhHHHHHHHHHHHHcC------------CCEEE
Confidence 4455667777877665421 000111111 2579999999999999776 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHhhhhcC--CCCeEEEEecChhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQARTKEEP--YKHPLVSVSDDEAEG 567 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~~~l~~--~g~tVIiVTHD~~e~ 567 (604)
|||- |++||..+...+.++ +++ .+.|||.|+|....-
T Consensus 539 LDEA-TsALDe~~e~~l~q~--l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 539 LDEA-TSALDEETEDRLYQL--LKEELPDATVISVGHRPTLW 577 (604)
T ss_pred Eecc-hhccChHHHHHHHHH--HHhhCCCCEEEEeccchhhH
Confidence 9999 999999999999988 666 689999999976543
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.32 E-value=2.3e-12 Score=135.71 Aligned_cols=66 Identities=18% Similarity=0.045 Sum_probs=56.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|||+.|+.++|-+++++ .+++++||| +++||+..+...... +.+.+.+++||+|.||+..+..+
T Consensus 213 ~LSGGELQr~aIaa~l~rd------------ADvY~FDEp-sSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~l 279 (591)
T COG1245 213 ELSGGELQRVAIAAALLRD------------ADVYFFDEP-SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYL 279 (591)
T ss_pred hcCchHHHHHHHHHHHhcc------------CCEEEEcCC-cccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHh
Confidence 3569999999999998777 999999999 999998887777666 55666689999999999987655
No 409
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.31 E-value=4.9e-13 Score=132.61 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=50.0
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
.++|+.++..+|++++.. -..+|+++++||| |++||+.....+.++ ..+. .+.|+|++||+....
T Consensus 128 lS~G~~~r~~la~al~~~--------~~~~p~ililDEP-t~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~ 193 (212)
T cd03274 128 LSGGEKTLSSLALVFALH--------HYKPTPLYVMDEI-DAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMF 193 (212)
T ss_pred cCHHHHHHHHHHHHHHhc--------ccCCCCEEEEcCC-CcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHH
Confidence 467888888888877320 0136899999999 999999999999888 4443 468999999996443
No 410
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.30 E-value=3e-12 Score=125.66 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=55.3
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cC--CCCeEEEEecChhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EP--YKHPLVSVSDDEAEG 567 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~--~g~tVIiVTHD~~e~ 567 (604)
++++|+.++..+|++++. +.+.+|+++||||| |++||......+.++ ..+ .. .+.|||++||+++++
T Consensus 109 ~lS~G~k~r~~ia~al~~--------~~~~~p~illlDEP-~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 109 TLSGGERSFSTVCLLLSL--------WEVMESPFRCLDEF-DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred ccChhHHHHHHHHHHHHH--------hcccCCCEEEecCc-ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 356899999988888831 12356999999999 999999998888876 333 22 235899999999999
Q ss_pred hhhh
Q psy3589 568 KNVK 571 (604)
Q Consensus 568 ~~~~ 571 (604)
..++
T Consensus 180 ~~~d 183 (198)
T cd03276 180 ASSD 183 (198)
T ss_pred cccc
Confidence 8874
No 411
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=4.9e-12 Score=117.59 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=55.0
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
-|||+.|++.+||.++-+ -.+|+|||| |+.||...+..+.++ .+.+..|.++|=|-||.+.-..+
T Consensus 153 FSGGEqQRVNIaRgfivd------------~pILLLDEP-TasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~v 218 (235)
T COG4778 153 FSGGEQQRVNIARGFIVD------------YPILLLDEP-TASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAV 218 (235)
T ss_pred cCCchheehhhhhhhhcc------------CceEEecCC-cccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHH
Confidence 469999999999999777 689999999 999999888888877 55667799999999997654443
No 412
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.24 E-value=1.7e-12 Score=119.14 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTP 399 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~ 399 (604)
-.++|+|+|||||||||++|+|...+..|.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~ 43 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSIL 43 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEE
T ss_pred CEEEEEccCCCccccceeeecccccccccccc
Confidence 36999999999999999999999988777653
No 413
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.21 E-value=1.4e-11 Score=121.06 Aligned_cols=49 Identities=10% Similarity=-0.079 Sum_probs=37.9
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHH-Hh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQ-AR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~-~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|+++++||| +++||+.....+. .+ ..+.+.+.++|++||+.+....+
T Consensus 107 ~~p~llllDEp-~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~ 157 (200)
T cd03280 107 DPDSLVLLDEL-GSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYA 157 (200)
T ss_pred CCCcEEEEcCC-CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHH
Confidence 46999999999 9999999877764 33 44556689999999996544433
No 414
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.20 E-value=1e-10 Score=121.45 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccc----cccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFP----IAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~----i~~l 444 (604)
-|.|||.||||||||+..|+|+..|+.|.+...++.+ .+.....+...+..+|. .+++
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV------------------~~e~ledYR~LfSavFsDyhLF~~l 412 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV------------------SAEQLEDYRKLFSAVFSDYHLFDQL 412 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC------------------CCCCHHHHHHHHHHHhhhHhhhHhh
Confidence 3789999999999999999999999988765433321 12222222222222221 0000
Q ss_pred c-----CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 445 R-----EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 445 ~-----~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
. .....+...++++.+.....+ .......+.+|.||..+.+.-.+++.+
T Consensus 413 l~~e~~as~q~i~~~LqrLel~~ktsl-----------------~d~~fs~~kLStGQkKRlAll~AllEe--------- 466 (546)
T COG4615 413 LGPEGKASPQLIEKWLQRLELAHKTSL-----------------NDGRFSNLKLSTGQKKRLALLLALLEE--------- 466 (546)
T ss_pred hCCccCCChHHHHHHHHHHHHhhhhcc-----------------cCCcccccccccchHHHHHHHHHHHhh---------
Confidence 0 111222222222221111100 000111223556766666666666555
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChh---hhhhhhhhccCCCcccCcCc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEA---EGKNVKRKHKGEETEEDEGE 585 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~---e~~~~~~~~~~~~~~~~~~~ 585 (604)
-+++++||= .+.-||.-++++... -.+++.|+|||.||||-. .+.++.+-..|..+++++.+
T Consensus 467 ---R~Ilv~DEW-AADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~tge~ 533 (546)
T COG4615 467 ---RDILVLDEW-AADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEE 533 (546)
T ss_pred ---CCeEEeehh-hccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeeccccc
Confidence 899999996 999999999998765 457889999999999864 56777888889888877654
No 415
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.3e-11 Score=129.36 Aligned_cols=171 Identities=17% Similarity=0.159 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
..++++||++|+||||++++|...+.+.+|.+...+.++..+.. ..+....|+.|.+.+..
T Consensus 289 g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq-------------------~slR~aIg~VPQDtvLF 349 (497)
T COG5265 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQ-------------------QSLRRAIGIVPQDTVLF 349 (497)
T ss_pred ccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHH-------------------HHHHHHhCcCcccceeh
Confidence 46899999999999999999999999988877554443322110 11112223333222211
Q ss_pred c---------------hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhh
Q psy3589 447 P---------------YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMA 511 (604)
Q Consensus 447 ~---------------~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dl 511 (604)
. ...+...++...+...+. ..|+ ..+..--.+|+. +|||+.|+.++||.+|++
T Consensus 350 NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~-~lP~---------gy~t~Vgerglk-lSggekqrvaiar~ilk~- 417 (497)
T COG5265 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ-SLPE---------GYDTGVGERGLK-LSGGEKQRVAIARTILKN- 417 (497)
T ss_pred hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH-hCch---------hhhcccchheee-ccCchHHHHHHHHHHhcC-
Confidence 0 011111111111111110 0111 011111125554 689999999999999888
Q ss_pred ccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhh---hhhhhccCCCcc
Q psy3589 512 TEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGK---NVKRKHKGEETE 580 (604)
Q Consensus 512 SgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~---~~~~~~~~~~~~ 580 (604)
|.+|+|||. |+.||..+...++........|.|.|+|-|.+.-+. +++.-..|.+.+
T Consensus 418 -----------p~il~~dea-tsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 418 -----------PPILILDEA-TSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred -----------CCEEEEehh-hhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 999999999 999999998888877222346899999999988654 445555565554
No 416
>KOG0065|consensus
Probab=99.17 E-value=4.6e-11 Score=140.02 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=40.5
Q ss_pred eecCCC-CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh
Q psy3589 518 LCLMPP-QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA 565 (604)
Q Consensus 518 al~~pP-~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~ 565 (604)
-|+.+| .+|+|||| |+|||..+...+.++ +.+...|.|||.+-|...
T Consensus 943 ELvA~P~~ilFLDEP-TSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEP-TSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred EEecCCceeEEecCC-CCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 556667 89999999 999999998888877 778889999999999765
No 417
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.17 E-value=8.4e-11 Score=110.67 Aligned_cols=94 Identities=28% Similarity=0.287 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcC-------cccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTP-------GHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~-------g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
.+++|+|++|||||||||.|.+.....++.+. .+|++.+.+.+..+..++||||+............+...||
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~ 115 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFP 115 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHH
Confidence 37899999999999999999998765555542 34556677788889999999999754443222222322222
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCC
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPD 470 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~ 470 (604)
.+..+...|.+..+.+...|.
T Consensus 116 ---------e~~~~~~~CkF~~C~H~~Ep~ 136 (161)
T PF03193_consen 116 ---------EFRPLAGQCKFRDCTHIHEPG 136 (161)
T ss_dssp ---------GGHHHTTHSSSTTTTSSSSTT
T ss_pred ---------HhccccCCCCccCCCCCCCCC
Confidence 234455667777777765553
No 418
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.16 E-value=7.6e-11 Score=111.97 Aligned_cols=70 Identities=10% Similarity=-0.015 Sum_probs=53.7
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
.++|+.++..+++++... -+.+|+++++||| ++++|+.....+... ......+.++|++||+.+.+....
T Consensus 78 lS~G~~~~~~la~~L~~~--------~~~~~~llllDEp-~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 78 LSGGEKELSALALILALA--------SLKPRPLYILDEI-DRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELAD 148 (162)
T ss_pred ccccHHHHHHHHHHHHhc--------CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhh
Confidence 457888899999988542 0126999999999 999999987777666 333222789999999999887654
No 419
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.16 E-value=8.2e-11 Score=113.51 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=54.3
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+++|+.++..+|++++.. .+.+|+++++||| +++||+.....+.++ ..+.+.|.++|++||+...+...
T Consensus 95 LS~Ge~~r~~Laral~~~--------~~~~p~llilDEp-~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~a 164 (178)
T cd03239 95 LSGGEKSLSALALIFALQ--------EIKPSPFYVLDEI-DAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENA 164 (178)
T ss_pred CCHHHHHHHHHHHHHHHh--------cCCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhC
Confidence 358889999999888421 1246999999999 999999998888777 44445578999999998877544
No 420
>KOG0054|consensus
Probab=99.14 E-value=5.5e-11 Score=142.24 Aligned_cols=173 Identities=19% Similarity=0.158 Sum_probs=115.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEE-ecCCCccCCCCCChhhhHhhccccc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRL-CDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l-~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
+.-||||||..|||||||+++|.++..+..|.+...+.++..+.+ ...+.+ .+.|-+ |.......+ =|.
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL-FsGTvR~NL------DPf 1237 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL-FSGTVRFNL------DPF 1237 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce-ecCcccccc------Ccc
Confidence 446899999999999999999999999989998877777655432 223322 233322 222211111 122
Q ss_pred ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 442 AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 442 ~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
++- ....+-..++++.+..... ..|.. ++..-...|. ..|-||.|+..+||++|+.
T Consensus 1238 ~e~--sD~~IW~ALe~~~Lk~~v~-~~p~~---------Ld~~v~egG~-N~SvGQRQLlCLARALLr~----------- 1293 (1381)
T KOG0054|consen 1238 DEY--SDDEIWEALERCQLKDVVS-SLPGG---------LDSEVSEGGE-NFSVGQRQLLCLARALLRK----------- 1293 (1381)
T ss_pred ccc--CHHHHHHHHHHhChHHHHh-hCCcC---------CCceecCCCc-cCChHHHHHHHHHHHHhcc-----------
Confidence 211 1234556677777665543 22211 1110011111 1357899999999999877
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHhhhhcC--CCCeEEEEecChhhhhhhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQARTKEEP--YKHPLVSVSDDEAEGKNVKRK 573 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~--~g~tVIiVTHD~~e~~~~~~~ 573 (604)
.+||+|||. |++.|+++=..+++. +++ .++|||.|-|.+.-+.+.+|.
T Consensus 1294 -skILvLDEA-TAsVD~~TD~lIQ~t--IR~~F~dcTVltIAHRl~TVmd~DrV 1343 (1381)
T KOG0054|consen 1294 -SKILVLDEA-TASVDPETDALIQKT--IREEFKDCTVLTIAHRLNTVMDSDRV 1343 (1381)
T ss_pred -CCEEEEecc-cccCChHHHHHHHHH--HHHHhcCCeEEEEeeccchhhhcCeE
Confidence 999999999 999999998888887 443 379999999999999988654
No 421
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.13 E-value=8.1e-11 Score=115.59 Aligned_cols=49 Identities=12% Similarity=-0.103 Sum_probs=39.3
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHH-Hh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQ-AR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~-~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|+++|+||| ++++|+.....+. .+ ..+.+.+.++|++||+.+++..+
T Consensus 104 ~~p~llllDEp-~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 104 GEPVLFLLDEI-FKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCeEEEEecc-cCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 36999999999 9999988766543 33 34555689999999999998776
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.13 E-value=5.5e-11 Score=117.00 Aligned_cols=50 Identities=12% Similarity=-0.054 Sum_probs=39.5
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHH-Hh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQ-AR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~-~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
.+|.++|+||| +++||+.....+. .+ ..+.+.+.++|++||+.+.+..+.
T Consensus 107 ~~~~llllDEp-~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 107 TPRSLVLIDEL-GRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCCeEEEEecC-CCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhh
Confidence 46999999999 9999998766553 33 335566899999999998877665
No 423
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.10 E-value=1.3e-10 Score=115.34 Aligned_cols=69 Identities=10% Similarity=-0.071 Sum_probs=50.8
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCC-C-CeEEEEecChhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-K-HPLVSVSDDEAEGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g-~tVIiVTHD~~e~~~ 569 (604)
+++|+.++..++..+.. +++.+|+++++||| |++||+.....+.++ ..+... | .|+|+||||+.++..
T Consensus 127 LS~G~~q~~~i~~~la~--------~~~~~p~llllDEP-~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 127 QSGGERSVSTMLYLLSL--------QELTRCPFRVVDEI-NQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred ccccHHHHHHHHHHHHH--------HhccCCCEEEEecc-cccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 56888776655554422 22467999999999 999999998888877 444444 4 579999999877654
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
.
T Consensus 198 ~ 198 (213)
T cd03277 198 Y 198 (213)
T ss_pred c
Confidence 4
No 424
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.04 E-value=5e-10 Score=137.54 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=56.9
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.++..+|++++.. ..+|+++||||| |++||...+..|.++ ..+.+.|.|||+|||+++++..
T Consensus 808 ~tLSGGE~QRV~LAraL~~~---------~~~P~LLILDEP-TsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~ 877 (1809)
T PRK00635 808 SSLSGGEIQRLKLAYELLAP---------SKKPTLYVLDEP-TTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKV 877 (1809)
T ss_pred ccCCHHHHHHHHHHHHHhhc---------CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 34678888888888888531 246999999999 999999999999888 5566679999999999999843
No 425
>KOG0054|consensus
Probab=99.03 E-value=5.5e-10 Score=133.80 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+|+||+-||||||||.+|+|......|.+...+. . .++.+.|-+. . ......++.|. |.+
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---i------aYv~Q~pWI~-n--gTvreNILFG~-~~d----- 609 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---V------AYVPQQPWIQ-N--GTVRENILFGS-PYD----- 609 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---E------EEeccccHhh-C--CcHHHhhhcCc-ccc-----
Confidence 459999999999999999999999887775432222 1 1222333332 1 12223344442 111
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
......+.+.|.+..=+.+- |..+. ...+ .+|. ++||||.+|..+||++.++ .+++|
T Consensus 610 ~~rY~~Vi~aC~L~~Dle~L-p~GD~--------TeIG-ErGi-nLSGGQKqRIsLARAVY~~------------adIYL 666 (1381)
T KOG0054|consen 610 EERYDKVIKACALKKDLEIL-PFGDL--------TEIG-ERGI-NLSGGQKQRISLARAVYQD------------ADIYL 666 (1381)
T ss_pred HHHHHHHHHHccCHhHHhhc-CCCCc--------ceec-CCcc-CCcHhHHHHHHHHHHHhcc------------CCEEE
Confidence 22334455666554322211 11110 0111 2343 4789999999999999666 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
||.| .+++|.+.-..|.+. ....=.++|+|+|||.+....+.+
T Consensus 667 LDDp-lSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad 710 (1381)
T KOG0054|consen 667 LDDP-LSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHAD 710 (1381)
T ss_pred EcCc-chhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCC
Confidence 9999 999998886666554 211123689999999998877663
No 426
>KOG0060|consensus
Probab=99.02 E-value=5.1e-10 Score=121.41 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccce--eEEEEecCCeEEecCCCccCCCCCChhhhHhhccccccc--
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH--FQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ-- 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~--~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~-- 443 (604)
-.+-|.||||||||||+++|.|+-+...|.+.-.++. ...+++.+..++.. .. ...++ ++|...
T Consensus 462 ~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~------GT---LRdQv---IYP~~~~~ 529 (659)
T KOG0060|consen 462 QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTL------GT---LRDQV---IYPLKAED 529 (659)
T ss_pred CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccc------cc---hhhee---eccCcccc
Confidence 4688999999999999999999998877766433332 12233333322211 10 00111 122110
Q ss_pred ---ccCchHHHHHHHHhcCHHHHhhcCC-CCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 444 ---LREPYSTVQYLAERMDLIKLLHIKH-PDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 444 ---l~~~~~~i~~l~~~~~l~~ll~~~~-p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
-......+..+++.+.+.+++.... -+.. ..++..+ .+|+|+.|+.+.||.+...
T Consensus 530 ~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~---~~~dW~d---------vLS~GEqQRLa~ARLfy~k--------- 588 (659)
T KOG0060|consen 530 MDSKSASDEDILRILENVQLGHLLEREGGLDQQ---VDWDWMD---------VLSPGEQQRLAFARLFYHK--------- 588 (659)
T ss_pred ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCch---hhccHHh---------hcCHHHHHHHHHHHHHhcC---------
Confidence 0111223444555555544432110 0000 0011111 2679999999999999655
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~ 568 (604)
|.+-+|||- |+++|.+.-..+.+. +++.|+|.|-|+|......
T Consensus 589 ---Pk~AiLDE~-TSAv~~dvE~~~Yr~--~r~~giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 589 ---PKFAILDEC-TSAVTEDVEGALYRK--CREMGITFISVGHRKSLWK 631 (659)
T ss_pred ---CceEEeech-hhhccHHHHHHHHHH--HHHcCCeEEEeccHHHHHh
Confidence 999999999 999999998888888 8889999999999876653
No 427
>KOG0064|consensus
Probab=99.00 E-value=1.5e-09 Score=116.27 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEE-----ecCCCccCCCCCChhhhHhhccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRL-----CDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l-----~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
...+.|+||||||||||+++|.|+-++..|........ ..+++++..++ .| .+..|... .+....-+
T Consensus 508 G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~-~mFYIPQRPYms~gtlRD--QIIYPdS~---e~~~~kg~-- 579 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN-NIFYIPQRPYMSGGTLRD--QIIYPDSS---EQMKRKGY-- 579 (728)
T ss_pred CceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCc-ceEeccCCCccCcCcccc--eeecCCcH---HHHHhcCC--
Confidence 35788999999999999999999998865543222111 13333333221 11 11122211 11111000
Q ss_pred ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 442 AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 442 ~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
....+..++..+.+..++.. +..|. +.+.-... ++||+.|+...||.+ .+
T Consensus 580 -----~d~dL~~iL~~v~L~~i~qr-----~~g~d------a~~dWkd~--LsgGekQR~~mARm~------------yH 629 (728)
T KOG0064|consen 580 -----TDQDLEAILDIVHLEHILQR-----EGGWD------AVRDWKDV--LSGGEKQRMGMARMF------------YH 629 (728)
T ss_pred -----CHHHHHHHHHHhhHHHHHHh-----ccChh------hhccHHhh--ccchHHHHHHHHHHH------------hc
Confidence 01122333444434333321 01111 11111222 469999999999999 45
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~ 567 (604)
.|.+-+|||- |++..+.....+.+. .+..|.++|-|||.....
T Consensus 630 rPkyalLDEc-TsAvsidvE~~i~~~--ak~~gi~llsithrpslw 672 (728)
T KOG0064|consen 630 RPKYALLDEC-TSAVSIDVEGKIFQA--AKDAGISLLSITHRPSLW 672 (728)
T ss_pred Ccchhhhhhh-hcccccchHHHHHHH--HHhcCceEEEeecCccHH
Confidence 5999999999 999998888888877 788999999999988764
No 428
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.97 E-value=2.3e-09 Score=126.30 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=54.8
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCC---CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPP---QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP---~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
++|||+.++..+|++++.. | .++||||| |++||+..+..|.++ ..+.+.|.|||+||||++++
T Consensus 830 tLSgGEkQRl~LAraL~~~------------p~~~~llILDEP-tsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i 896 (943)
T PRK00349 830 TLSGGEAQRVKLAKELSKR------------STGKTLYILDEP-TTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVI 896 (943)
T ss_pred cCCHHHHHHHHHHHHHhcC------------CCCCeEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 4567888888888877544 7 89999999 999999999988887 55666789999999999998
Q ss_pred hhh
Q psy3589 568 KNV 570 (604)
Q Consensus 568 ~~~ 570 (604)
...
T Consensus 897 ~~a 899 (943)
T PRK00349 897 KTA 899 (943)
T ss_pred HhC
Confidence 644
No 429
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=2.2e-09 Score=126.23 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=56.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.. ..+|.++||||| |++||+..+..|.++ ..+.+.|.|||+||||++++...
T Consensus 828 tLSgGe~QRl~LA~aL~~~---------~~~p~llILDEP-tsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~a 897 (924)
T TIGR00630 828 TLSGGEAQRIKLAKELSKR---------STGRTLYILDEP-TTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTA 897 (924)
T ss_pred cCCHHHHHHHHHHHHHhhc---------CCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 4567788888888777542 125999999999 999999999998888 55666689999999999988654
Q ss_pred h
Q psy3589 571 K 571 (604)
Q Consensus 571 ~ 571 (604)
.
T Consensus 898 D 898 (924)
T TIGR00630 898 D 898 (924)
T ss_pred C
Confidence 3
No 430
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.95 E-value=2.3e-09 Score=116.84 Aligned_cols=77 Identities=17% Similarity=0.070 Sum_probs=66.4
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||.+|.+.+|+.|..+ |++|||||| |-|.|+.+...+.++ .++...|.+|||||.++.|+..+
T Consensus 401 ~LSGGNQQKVvlarwL~~~------------p~vLilDEP-TRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~ 467 (500)
T COG1129 401 TLSGGNQQKVVLARWLATD------------PKVLILDEP-TRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGL 467 (500)
T ss_pred cCCchhhhhHHHHHHHhcC------------CCEEEECCC-CcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhh
Confidence 4679999999999988555 999999999 999999999999988 77888899999999999999755
Q ss_pred ----hhhccCCCccc
Q psy3589 571 ----KRKHKGEETEE 581 (604)
Q Consensus 571 ----~~~~~~~~~~~ 581 (604)
..-+.|...++
T Consensus 468 ~DRIlVm~~Gri~~e 482 (500)
T COG1129 468 SDRILVMREGRIVGE 482 (500)
T ss_pred CCEEEEEECCEEEEE
Confidence 35567877775
No 431
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.86 E-value=3.6e-09 Score=102.68 Aligned_cols=48 Identities=8% Similarity=-0.143 Sum_probs=35.9
Q ss_pred CCCCcccccCCCcCCCCHHHHHHH-HHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWI-QAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L-~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
.+|.++|+||| ++++|+.....+ ..+ ..+.+ .+.++|++||+.+....
T Consensus 77 ~~~~llllDEp-~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~ 127 (185)
T smart00534 77 TENSLVLLDEL-GRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKL 127 (185)
T ss_pred CCCeEEEEecC-CCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHH
Confidence 46999999999 999998865554 333 33444 48899999999965443
No 432
>KOG2355|consensus
Probab=98.86 E-value=3.1e-09 Score=101.94 Aligned_cols=65 Identities=14% Similarity=-0.015 Sum_probs=51.4
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+.||..++.++.-+ +.|=.+|||||- |-.||+.++..|.++ .+....|.|||..||--+-....
T Consensus 148 vSDGqrRRVQicMGL------------L~PfkVLLLDEV-TVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~W 214 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGL------------LKPFKVLLLDEV-TVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETW 214 (291)
T ss_pred ccccchhhhHHHHhc------------ccceeEEEeeee-EeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhc
Confidence 456777777666665 566799999999 999999999999888 34566799999999987655544
No 433
>COG1159 Era GTPase [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=101.77 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceE
Q psy3589 183 LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTI 261 (604)
Q Consensus 183 ~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~v 261 (604)
.|..|.+..|..+..+|+||+|||+..++...+..+...++. .+.|+||++||+|.+.+.. +.+..+++....++..+
T Consensus 71 l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~i 149 (298)
T COG1159 71 LGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK-TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEI 149 (298)
T ss_pred HHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh-cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceE
Confidence 577899999999999999999999999998888888777773 4679999999999999887 57888899999999999
Q ss_pred EEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccc
Q psy3589 262 LCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGA 314 (604)
Q Consensus 262 v~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~ 314 (604)
|++||. ++.++..|++.+...+++.
T Consensus 150 vpiSA~----------------------------~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 150 VPISAL----------------------------KGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred EEeecc----------------------------ccCCHHHHHHHHHHhCCCC
Confidence 999997 5667888988888877654
No 434
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.83 E-value=3.5e-08 Score=97.79 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHhhccceeeeecCCCCcccccCCCc-----CCCCHHHHHHHHHh
Q psy3589 498 YDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWE-----KHPDIDEILWIQAR 547 (604)
Q Consensus 498 ~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T-----~~LD~~~~~~L~~~ 547 (604)
.....+|+.++.+ |+++++||| | ++||+.....+.++
T Consensus 158 ~~f~~ia~~l~~~------------p~~~~ldEp-~~~~~~~~ld~~~~~~~~~~ 199 (215)
T PTZ00132 158 KPFLWLARRLTND------------PNLVFVGAP-ALAPEEIQIDPELVAQAEKE 199 (215)
T ss_pred HHHHHHHHHHhhc------------ccceecCCc-ccCCCccccCHHHHHHHHHH
Confidence 3346677777555 999999999 9 99999999888887
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.81 E-value=1.2e-08 Score=101.30 Aligned_cols=51 Identities=8% Similarity=-0.063 Sum_probs=37.1
Q ss_pred cCCCCcccccCCCcCCCCHHH-HHHHHHh-hhhcCC---CCeEEEEecChhhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDE-ILWIQAR-TKEEPY---KHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~-~~~L~~~-~~l~~~---g~tVIiVTHD~~e~~~~~ 571 (604)
+.+|.++|+||| ++++|+.. ...+..+ ..+.+. +.++|++||+.+.+..+.
T Consensus 106 ~~~~slvllDE~-~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 106 ATRRSLVLIDEF-GKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCcEEEeccc-cCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 456999999999 99999764 3333333 334333 358999999999988774
No 436
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=104.92 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=54.3
Q ss_pred hcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecCh
Q psy3589 487 KRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDE 564 (604)
Q Consensus 487 ~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~ 564 (604)
.+.+-.++.||..+..+|..+ ...|++++.||- .+|||..+...+..- .. .++.|.|+++|||..
T Consensus 502 Rr~f~ELStGQKeR~KLAkll------------aerpn~~~iDEF-~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 502 RRKFSELSTGQKERAKLAKLL------------AERPNVLLIDEF-AAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred hccHhhcCcchHHHHHHHHHH------------hcCCCcEEhhhh-hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 344444667888888888887 344999999999 999998775555433 33 456799999999999
Q ss_pred hhhhhh
Q psy3589 565 AEGKNV 570 (604)
Q Consensus 565 ~e~~~~ 570 (604)
+....+
T Consensus 569 Ev~~AL 574 (593)
T COG2401 569 EVGNAL 574 (593)
T ss_pred HHHhcc
Confidence 988776
No 437
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=1e-08 Score=105.82 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=48.5
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
++||+.++..+|++++.. ...+|+++++||| +++||+.....+.++ ..+. .+.|+|+|||++..+..
T Consensus 171 lS~G~~~r~~la~~~~~~--------~~~~p~vlllDEp-~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~~~~ 238 (276)
T cd03241 171 ASGGELSRLMLALKAILA--------RKDAVPTLIFDEI-DTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQVAAM 238 (276)
T ss_pred cChhHHHHHHHHHHHHHh--------cCCCCCEEEEECC-ccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHHHHh
Confidence 346666666666544210 0127999999999 999999999888887 3343 36899999999986543
No 438
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.77 E-value=8.5e-09 Score=101.65 Aligned_cols=51 Identities=6% Similarity=-0.155 Sum_probs=38.7
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHH-HHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWI-QAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L-~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+.+|.++|+||| +.++|+.....+ ..+ ..+.+.+.++|++||+.+.+..+.
T Consensus 106 ~~~~~lvllDE~-~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 106 ADGDSLVLIDEL-GRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred cCCCcEEEeccc-cCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 467999999999 999998653333 222 335566899999999999987653
No 439
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.76 E-value=4.7e-08 Score=94.10 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=57.9
Q ss_pred CcccHHHHHHHHHHhhccce-----ee-eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhh
Q psy3589 496 GRYDSYRAANELLRMATEGR-----IC-LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEG 567 (604)
Q Consensus 496 G~~d~~~~Ar~ll~dlSgG~-----l~-al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~ 567 (604)
|-.|-..+.......+..|+ |+ +++..|.+||.||| ||.+++.+...+..+ ..++ ..|.||+++|||+..+
T Consensus 144 GIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEP-TN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~i 222 (330)
T COG4170 144 GIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEP-TNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI 222 (330)
T ss_pred ccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCC-CcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHH
Confidence 44566666666667777776 34 77888999999999 999999998888777 3343 4578999999999987
Q ss_pred hhh
Q psy3589 568 KNV 570 (604)
Q Consensus 568 ~~~ 570 (604)
.+.
T Consensus 223 s~W 225 (330)
T COG4170 223 SQW 225 (330)
T ss_pred HHH
Confidence 665
No 440
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.76 E-value=1.3e-08 Score=95.60 Aligned_cols=59 Identities=39% Similarity=0.589 Sum_probs=44.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFPSK 427 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p~~ 427 (604)
++|+++|.||||||||||+|+|.. ..+|..||+|.......+ ...+.++|+||++....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCC
Confidence 579999999999999999999998 668999999987654332 35678999999865443
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.73 E-value=2e-08 Score=102.97 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG 400 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g 400 (604)
..++|+|+||||||||+++|+|...+..|.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~ 144 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGL 144 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEE
Confidence 579999999999999999999999987776543
No 442
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.5e-07 Score=106.14 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=60.9
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
-++|||+.|+..+|..|.+. +.| .-++||||| |.||-..-+..|... ..|...|-|||+|.|+++.+..
T Consensus 821 tTLSGGEaQRvKLA~EL~k~-~tg--------~TlYiLDEP-TTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~ 890 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKR-STG--------KTLYILDEP-TTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKT 890 (935)
T ss_pred ccccchHHHHHHHHHHHhhc-cCC--------CeEEEeCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEee
Confidence 35789999999999999777 444 578899999 999999998888887 6677889999999999999876
Q ss_pred hh
Q psy3589 570 VK 571 (604)
Q Consensus 570 ~~ 571 (604)
.+
T Consensus 891 AD 892 (935)
T COG0178 891 AD 892 (935)
T ss_pred cC
Confidence 64
No 443
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.63 E-value=2.8e-07 Score=94.86 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEE
Q psy3589 185 LETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCF 264 (604)
Q Consensus 185 le~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~ 264 (604)
..+.+.+|..++.+|+||+|+|++.+.... ..+...+. ..++|+|+|+||+|++++.....+...+...++...++++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~i 144 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQ-NLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPI 144 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHH-hcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEE
Confidence 346677888999999999999999875432 44555554 4578999999999998776555454445444444478899
Q ss_pred eeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhcc
Q psy3589 265 TSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQG 313 (604)
Q Consensus 265 Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~ 313 (604)
||. .+.|+++|++.+.+.++.
T Consensus 145 SA~----------------------------~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 145 SAL----------------------------TGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred ecC----------------------------CCCCHHHHHHHHHHhCCC
Confidence 987 567889999988887654
No 444
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.63 E-value=3.2e-08 Score=115.21 Aligned_cols=47 Identities=9% Similarity=-0.099 Sum_probs=37.8
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHH-Hh-hhhcCCCCeEEEEecChhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQ-AR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~-~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
.+|.++|+||| ++|+|+.....|. .+ ..+.+.|.++|++||+.+...
T Consensus 401 ~~~sLvLlDE~-g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 401 TENSLVLFDEL-GAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred CCCcEEEecCC-CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 46999999999 9999998877663 33 345667899999999987643
No 445
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.61 E-value=7.5e-08 Score=85.72 Aligned_cols=57 Identities=37% Similarity=0.572 Sum_probs=45.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--Eec-CCeEEecCCCccCC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLT-DNIRLCDCPGLVFP 425 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~-~~~~l~D~pGl~~p 425 (604)
+|+|+|++|||||||+|+|+|.....++..++.|+..... ... ..+.++|+||+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 5899999999999999999997777788889998887432 222 34579999998643
No 446
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=1.6e-07 Score=96.66 Aligned_cols=69 Identities=13% Similarity=-0.035 Sum_probs=47.9
Q ss_pred ccCcccHHHHHHHHHHhhccce-eeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 494 KTGRYDSYRAANELLRMATEGR-ICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 494 sGG~~d~~~~Ar~ll~dlSgG~-l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|+.++..+|+++.. ++ +..+...|+++|+||| |++||+..+..+... +...+ .+|+++|+...+..+
T Consensus 185 S~Gq~~~~~la~~la~----~~~~~~~~~~~~illlDEp-~a~LD~~~~~~l~~~--l~~~~-q~ii~~~~~~~~~~~ 254 (270)
T cd03242 185 SQGQQRTLALALKLAE----IQLIKEVSGEYPVLLLDDV-LAELDLGRQAALLDA--IEGRV-QTFVTTTDLADFDAL 254 (270)
T ss_pred ChHHHHHHHHHHHHHH----HHHHHHhhCCCcEEEEcCc-chhcCHHHHHHHHHH--hhcCC-CEEEEeCCchhccch
Confidence 4566666666665521 11 1123457999999999 999999999999888 65555 567777777766554
No 447
>COG1159 Era GTPase [General function prediction only]
Probab=98.58 E-value=7e-08 Score=98.08 Aligned_cols=60 Identities=37% Similarity=0.615 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee-EEEEe--cCCeEEecCCCccCCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF-QTIFL--TDNIRLCDCPGLVFPSK 427 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~-q~~~~--~~~~~l~D~pGl~~p~~ 427 (604)
..|||||.||||||||+|.|+|.+..-++..+.+|++. +.++. ...+.++||||+..|..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 46999999999999999999999999999999999874 44444 34578999999998854
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=2.2e-07 Score=88.25 Aligned_cols=45 Identities=9% Similarity=-0.108 Sum_probs=38.1
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
..-.+.+|||| .++|.+..+..|... ..+.+.|.-+||+||..=.
T Consensus 145 ~~~GiYiLDEP-Ea~LSp~RQlella~l~~la~sGaQ~IiATHSPiL 190 (233)
T COG3910 145 NGQGIYILDEP-EAALSPSRQLELLAILRDLADSGAQIIIATHSPIL 190 (233)
T ss_pred ccCceEEecCc-cccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 45789999999 999999988777766 6677889999999998654
No 449
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=91.55 Aligned_cols=62 Identities=37% Similarity=0.606 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC-CccccCcCcccceeEEEEecCCeEEecCCCccCCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSK 427 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~-~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~ 427 (604)
...-|+++|.+|||||||||+|+|.. -+.+|.+||.|+.+..+.+.....++|.||+.|...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv 85 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKV 85 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccC
Confidence 44679999999999999999999976 478999999999998888888899999999987654
No 450
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.55 E-value=1.6e-07 Score=93.43 Aligned_cols=46 Identities=7% Similarity=-0.151 Sum_probs=30.6
Q ss_pred cCCCCcccccCCCcCCCC---HHHH-HHHHHhhhhcCC-CCeEEEEecChhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPD---IDEI-LWIQARTKEEPY-KHPLVSVSDDEAEGK 568 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD---~~~~-~~L~~~~~l~~~-g~tVIiVTHD~~e~~ 568 (604)
+.+|.++||||| ..+.+ .... ..+.+. +.+. +.++|++||+.+...
T Consensus 107 ~~~~~llllDEp-~~gt~~lD~~~~~~~il~~--l~~~~~~~vi~~TH~~~l~~ 157 (216)
T cd03284 107 ATERSLVLLDEI-GRGTSTYDGLSIAWAIVEY--LHEKIGAKTLFATHYHELTE 157 (216)
T ss_pred CCCCeEEEEecC-CCCCChHHHHHHHHHHHHH--HHhccCCcEEEEeCcHHHHH
Confidence 356999999999 65555 3331 223333 5555 889999999975433
No 451
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.54 E-value=1.3e-07 Score=94.63 Aligned_cols=47 Identities=11% Similarity=-0.069 Sum_probs=32.5
Q ss_pred CCCCcccccCCC--cCCCCHHHHHHHH-Hhhhhc-CCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYW--EKHPDIDEILWIQ-ARTKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~--T~~LD~~~~~~L~-~~~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|.++|||||. |++||...+.+.. +. +. ..+.++|++||+ .++..+
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~~il~~--l~~~~~~~vlisTH~-~el~~~ 158 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAWAIAEY--IATQIKCFCLFATHF-HELTAL 158 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHHHHHHH--HHhcCCCeEEEEech-HHHHHH
Confidence 469999999993 4558877765433 33 33 357899999997 444443
No 452
>PRK00089 era GTPase Era; Reviewed
Probab=98.44 E-value=1.7e-06 Score=90.04 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=74.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCC-CHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLA-PAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv-~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
+-+..|..+..+|+|++|+|+..++......+...+. ..++|+|+|+||+|++ +........+.+...++...++.+|
T Consensus 74 ~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~-~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 74 MNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLK-KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHh-hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence 3455677889999999999999876555555555554 3468999999999999 5566666777777766667888999
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhcc
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQG 313 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~ 313 (604)
|. .+.|+.+|++.+...++.
T Consensus 153 A~----------------------------~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 153 AL----------------------------KGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CC----------------------------CCCCHHHHHHHHHHhCCC
Confidence 86 456788888888776643
No 453
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.44 E-value=1.1e-06 Score=85.39 Aligned_cols=98 Identities=19% Similarity=0.343 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH---hHHHHHHHHHhhC--C---
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP---LVLAWKHYFQSKF--P--- 257 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~---~~~~w~~yf~~~~--p--- 257 (604)
.+-++..+.+..+|++|+|||+..++......+..++. ..+.|+|+|+||+|++... ....+...|-+.+ +
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~-~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILR-ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEE 160 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHH-HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTS
T ss_pred ceeecccceecccccceeeeeccccccccccccccccc-ccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccc
Confidence 34556677899999999999999886544444444443 5678999999999999432 2344443442222 1
Q ss_pred CceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 258 KLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 258 ~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
.++++++||. .+.|+..|++.+..++|
T Consensus 161 ~~~vi~~Sa~----------------------------~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 161 IVPVIPISAL----------------------------TGDGIDELLEALVELLP 187 (188)
T ss_dssp TEEEEEEBTT----------------------------TTBTHHHHHHHHHHHS-
T ss_pred cceEEEEecC----------------------------CCCCHHHHHHHHHHhCc
Confidence 3679999997 66789999999887654
No 454
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.44 E-value=9.7e-08 Score=94.95 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=44.6
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.....+|-.+.- .-..+..+++|||+ .++||...+..+..+ ..+. .+.-+|++||+.......
T Consensus 137 lSgGEk~~~~Lal~lA~--------~~~~~~p~~ilDEv-d~~LD~~~~~~l~~~l~~~~-~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 137 LSGGEKSLVALALLLAL--------QRYKPSPFLILDEV-DAALDEQNRKRLADLLKELS-KQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp S-HHHHHHHHHHHHHHH--------HTCS--SEEEEEST-TTTS-HHHHHHHHHHHHHHT-TTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccc--------cccccccccccccc-cccccccccccccccccccc-cccccccccccccccccc
Confidence 56887766666655531 12356789999999 999999999999888 2222 247899999998877655
No 455
>PRK15494 era GTPase Era; Provisional
Probab=98.43 E-value=1.3e-06 Score=93.03 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEE
Q psy3589 183 LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTIL 262 (604)
Q Consensus 183 ~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv 262 (604)
.+..+.+.+|..+..||+||+|+|+..++......+...+. ..++|.|||+||+||.+. ......+++...++...++
T Consensus 117 l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~-~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~ 194 (339)
T PRK15494 117 LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLR-SLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLF 194 (339)
T ss_pred HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHH-hcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEE
Confidence 34567888999999999999999998876544444555554 346788999999999764 3445556666666566788
Q ss_pred EEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhcc
Q psy3589 263 CFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQG 313 (604)
Q Consensus 263 ~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~ 313 (604)
++||+ ++.|+++|++.+...++.
T Consensus 195 ~iSAk----------------------------tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 195 PISAL----------------------------SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred EEecc----------------------------CccCHHHHHHHHHHhCCC
Confidence 99987 567888999888876653
No 456
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.42 E-value=7.1e-07 Score=89.12 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=34.9
Q ss_pred CCCCcccccCCCcCCCCHHHHHHH-HHh-hhhcCC-CCeEEEEecChhhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWI-QAR-TKEEPY-KHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L-~~~-~~l~~~-g~tVIiVTHD~~e~~~~~ 571 (604)
.+|.++|+||| ..+.|......+ ..+ ..+.+. +.++|++||+.+.+....
T Consensus 109 ~~~sLvllDE~-~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~ 161 (222)
T cd03287 109 TSRSLVILDEL-GRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILR 161 (222)
T ss_pred CCCeEEEEccC-CCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHH
Confidence 45999999999 888884443322 222 224444 789999999999876554
No 457
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.40 E-value=9.7e-07 Score=94.61 Aligned_cols=92 Identities=23% Similarity=0.406 Sum_probs=75.9
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCH--HhHHHHHHHHHhhCCC---ceEEEE
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPA--PLVLAWKHYFQSKFPK---LTILCF 264 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~--~~~~~w~~yf~~~~p~---~~vv~~ 264 (604)
...+++++||+|++|+||+.|+...+..+..++. +.++++|+|+||.||+.. .....+.+-+..++++ .+++|+
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~-~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIE-EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHH-HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 3668999999999999999999999999999987 668999999999999986 5566676666666654 578999
Q ss_pred eeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 265 TSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 265 Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
||. ++.|+.+|++++..+
T Consensus 332 SA~----------------------------~~~~i~~l~~~i~~~ 349 (444)
T COG1160 332 SAL----------------------------TGQGLDKLFEAIKEI 349 (444)
T ss_pred Eec----------------------------CCCChHHHHHHHHHH
Confidence 997 556778888887764
No 458
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.39 E-value=2.7e-06 Score=78.75 Aligned_cols=77 Identities=23% Similarity=0.141 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
.+|++....+..+|++++|+|++++.......+..++. ..++|+|+|+||+|+.+.... ...+.... ..+++++|
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~---~~~~~~~~-~~~~~~~S 139 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLR-KSKKPVILVVNKVDNIKEEDE---AAEFYSLG-FGEPIPIS 139 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHH-hcCCCEEEEEECcccCChHHH---HHHHHhcC-CCCeEEEe
Confidence 45666667788999999999999988777777777776 456999999999999887654 12222222 22678888
Q ss_pred ec
Q psy3589 266 SY 267 (604)
Q Consensus 266 a~ 267 (604)
+.
T Consensus 140 a~ 141 (157)
T cd01894 140 AE 141 (157)
T ss_pred cc
Confidence 86
No 459
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.38 E-value=2.6e-06 Score=79.93 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=58.3
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCH--HhHHHHHHHHHhhCC---CceEEEE
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPA--PLVLAWKHYFQSKFP---KLTILCF 264 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~--~~~~~w~~yf~~~~p---~~~vv~~ 264 (604)
+....+..+|++++|+|+.+|.......+..++. ..++|+|+|+||+|+.+. .....+...+...++ ..+++++
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLIL-EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHH-hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3445678999999999999998766655555554 346899999999999877 556667777766654 3567888
Q ss_pred eec
Q psy3589 265 TSY 267 (604)
Q Consensus 265 Sa~ 267 (604)
||.
T Consensus 156 Sa~ 158 (174)
T cd01895 156 SAL 158 (174)
T ss_pred ecc
Confidence 886
No 460
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.35 E-value=1.4e-06 Score=92.15 Aligned_cols=97 Identities=22% Similarity=0.232 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCC----hh----HHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh
Q psy3589 184 NLETWRQLWRVLEMSDIILIIIDIRYPCLMFP----PT----LYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSK 255 (604)
Q Consensus 184 Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~----~~----L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~ 255 (604)
+..+-.+.++.++++|++|+|+|+.++-...+ .. |..|.....++|+|||+||+||.+......+.++|...
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~ 301 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA 301 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH
Confidence 33455677888999999999999986521111 11 22221112468999999999999877667777777665
Q ss_pred CCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 256 FPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 256 ~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
+ +..++++||+ .+.|+++|++.+.+
T Consensus 302 ~-~~~vi~iSAk----------------------------tg~GI~eL~~~I~~ 326 (329)
T TIGR02729 302 L-GKPVFPISAL----------------------------TGEGLDELLYALAE 326 (329)
T ss_pred c-CCcEEEEEcc----------------------------CCcCHHHHHHHHHH
Confidence 4 3578889987 45678888877655
No 461
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.35 E-value=1.1e-06 Score=82.78 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCC-CCCC-ChhHHHHhhc----cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCce
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYP-CLMF-PPTLYDYVTG----TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLT 260 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~P-l~~~-~~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~ 260 (604)
+++.+++.+..+|++++|+|+.++ -... ...+...+.. ..++|+|+|+||+|+.+......|...+.....+..
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKP 147 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCC
Confidence 455666778899999999999987 2211 1122222221 136899999999999887776677665544422356
Q ss_pred EEEEeec
Q psy3589 261 ILCFTSY 267 (604)
Q Consensus 261 vv~~Sa~ 267 (604)
++.+||+
T Consensus 148 ~~~~Sa~ 154 (170)
T cd01898 148 VFPISAL 154 (170)
T ss_pred EEEEecC
Confidence 7888886
No 462
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.34 E-value=6.1e-07 Score=96.40 Aligned_cols=60 Identities=35% Similarity=0.529 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--cC-CeEEecCCCccCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--TD-NIRLCDCPGLVFP 425 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--~~-~~~l~D~pGl~~p 425 (604)
..++++|+|+||||||||||+|++..+.-+..+||+|+++-..++ .. .+.++||.|+.-.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet 278 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET 278 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence 458999999999999999999999999999999999999865443 22 4678999999843
No 463
>KOG0063|consensus
Probab=98.33 E-value=1.5e-06 Score=91.73 Aligned_cols=66 Identities=14% Similarity=-0.039 Sum_probs=48.9
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++||+.|+.++|-.+ =.|+++.+.||| .+.||.+.+..-... +-+...+.|-++|.||.-.+..
T Consensus 456 ~lSggelQRval~KOG------------GKpAdvYliDEp-sAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 456 GLSGGELQRVALALCL------------GKPADVYLIDEP-SAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred cCCchhhHHHHHHHhc------------CCCCceEEecCc-hhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh
Confidence 3568988888887666 356899999999 999997775443332 1145567899999999877654
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 523 l 523 (592)
T KOG0063|consen 523 L 523 (592)
T ss_pred h
Confidence 4
No 464
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.33 E-value=3.5e-07 Score=108.17 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=60.4
Q ss_pred cchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 488 RSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 488 rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
+...++|||+.|+..+|++|... ..|.++||||| |++||+..+..|.++ ..+++.|.|||||+||+++
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~~----------~~~~llILDEP-tagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~ 553 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGSG----------LTGVLYVLDEP-SIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT 553 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhhC----------CCCcEEEecCC-ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 34455789999999999999554 12499999999 999999999999888 6677779999999999999
Q ss_pred hhhhh
Q psy3589 567 GKNVK 571 (604)
Q Consensus 567 ~~~~~ 571 (604)
+...+
T Consensus 554 i~~aD 558 (943)
T PRK00349 554 IRAAD 558 (943)
T ss_pred HHhCC
Confidence 86543
No 465
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.33 E-value=4.8e-07 Score=105.75 Aligned_cols=49 Identities=8% Similarity=-0.075 Sum_probs=38.3
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHH-Hh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQ-AR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~-~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
.+|.++|+||| ++|+|+.....+. .+ ..+...+.++|++||+.+.+...
T Consensus 406 ~~~sLvLlDE~-~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 406 DKNSLVLFDEL-GAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALM 456 (782)
T ss_pred CcCcEEEecCC-CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHH
Confidence 45999999999 9999988766553 33 33556688999999998877654
No 466
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.31 E-value=4.2e-06 Score=79.03 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEee
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
..+.++..+..+|++|+|+|+..+..+....+..+ ..++|+|+|+||+|+... ....+.+++.+.....+++++||
T Consensus 54 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~---~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 54 WYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI---GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc---cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEEC
Confidence 34555667889999999999998875555444332 236789999999999653 33445566655543357888998
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+ ++.|+++|++.+.+.
T Consensus 130 ~----------------------------~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 130 H----------------------------DPQSVQQLVDYLASL 145 (158)
T ss_pred C----------------------------CccCHHHHHHHHHHh
Confidence 7 567888888887664
No 467
>KOG0063|consensus
Probab=98.31 E-value=1.6e-06 Score=91.64 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=49.2
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++||+.++-++|... ++..++.++||| .+.||+..+...... +.+..-..-||+|.||+.....+
T Consensus 214 lsggelqrfaia~~~------------vq~advyMFDEp-SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDyl 279 (592)
T KOG0063|consen 214 LSGGELQRFAIAMVC------------VQKADVYMFDEP-SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYL 279 (592)
T ss_pred cccchhhhhhhhhhh------------hhhcceeEecCC-cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhh
Confidence 347777777776665 455999999999 999998876555444 44555577899999999987655
No 468
>PRK09866 hypothetical protein; Provisional
Probab=98.31 E-value=4.7e-06 Score=93.00 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCC--CcEEEEEeCCCCCC-----HHhHHHHHHHH--HhhCCCceEEE
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLG--KDMILVMNKIDLAP-----APLVLAWKHYF--QSKFPKLTILC 263 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~--K~~ILVlNK~DLv~-----~~~~~~w~~yf--~~~~p~~~vv~ 263 (604)
+.+..||+||+|||+..+....+..+.+.++. .+ +|+|+|+||+|+.+ .+.+......+ ....+...|++
T Consensus 254 eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk-~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfP 332 (741)
T PRK09866 254 QQLARASAVLAVLDYTQLKSISDEEVREAILA-VGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFP 332 (741)
T ss_pred HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHh-cCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEE
Confidence 47999999999999998877667777777763 34 49999999999986 33444444322 33344567999
Q ss_pred Eeec
Q psy3589 264 FTSY 267 (604)
Q Consensus 264 ~Sa~ 267 (604)
+||.
T Consensus 333 VSAl 336 (741)
T PRK09866 333 VSSM 336 (741)
T ss_pred EeCC
Confidence 9998
No 469
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.30 E-value=6e-06 Score=81.30 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCC-CCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHH----HHHHHHHhh-CCCce
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCL-MFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVL----AWKHYFQSK-FPKLT 260 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~-~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~----~w~~yf~~~-~p~~~ 260 (604)
+-+..++.+..+|++|+|+|+..|.. .........+.....+|+|+|+||+||++..... ...+++... ..+++
T Consensus 96 ~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (203)
T cd01888 96 LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAP 175 (203)
T ss_pred HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCc
Confidence 44556777888999999999998632 1222222233222235789999999998754432 233333321 12457
Q ss_pred EEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 261 ILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 261 vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
++++||+ .+.|+.+|++.+.+.++
T Consensus 176 i~~vSA~----------------------------~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 176 IIPISAQ----------------------------LKYNIDVLLEYIVKKIP 199 (203)
T ss_pred EEEEeCC----------------------------CCCCHHHHHHHHHHhCC
Confidence 8899987 56788889888876544
No 470
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=4.3e-07 Score=107.22 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=59.7
Q ss_pred chhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 489 SYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 489 g~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
..-++|||+.|+..+|+++... ..|.++||||| |++||+.....|.++ ..+.+.|.|||+|+||++++
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~~----------~~~~llILDEP-tagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i 552 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGSG----------LTGVLYVLDEP-SIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETI 552 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhhC----------CCCcEEEEcCC-ccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 3445789999999999999554 12589999999 999999999999888 66767799999999999988
Q ss_pred hhhh
Q psy3589 568 KNVK 571 (604)
Q Consensus 568 ~~~~ 571 (604)
...+
T Consensus 553 ~~aD 556 (924)
T TIGR00630 553 RAAD 556 (924)
T ss_pred hhCC
Confidence 6443
No 471
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.29 E-value=4.4e-06 Score=76.63 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=50.0
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEee
Q psy3589 188 WRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 188 wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa 266 (604)
++.+...+..+|++|+|+|+.+|..+....+...+ .+|+|+|+||+||.+.... ..-.++++..+ ..+++.+||
T Consensus 53 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 127 (142)
T TIGR02528 53 YSALIVTAADADVIALVQSATDPESRFPPGFASIF----VKPVIGLVTKIDLAEADVDIERAKELLETAG-AEPIFEISS 127 (142)
T ss_pred HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc----cCCeEEEEEeeccCCcccCHHHHHHHHHHcC-CCcEEEEec
Confidence 44445568999999999999999877665443332 4699999999999763221 22223344332 236778888
Q ss_pred c
Q psy3589 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
+
T Consensus 128 ~ 128 (142)
T TIGR02528 128 V 128 (142)
T ss_pred C
Confidence 6
No 472
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.29 E-value=7.5e-06 Score=88.36 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=69.2
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||..|..-+||.+.++ |++|++-.| |-|||..+...+.+. ...++.|.+|++||-|++|+..+
T Consensus 403 ~LSGGNqQK~IlaREl~~~------------p~lLI~~qP-TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~l 469 (501)
T COG3845 403 SLSGGNQQKLILARELARR------------PDLLIAAQP-TRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILEL 469 (501)
T ss_pred hcCCcceehhhhhhhhccC------------CCEEEEcCC-CccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHh
Confidence 3679999999999998555 999999999 999999999999887 67788899999999999999877
Q ss_pred ----hhhccCCCcccCcCc
Q psy3589 571 ----KRKHKGEETEEDEGE 585 (604)
Q Consensus 571 ----~~~~~~~~~~~~~~~ 585 (604)
...+.|+.+..-+.+
T Consensus 470 sDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 470 SDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred hheeeeeeCCceecccccc
Confidence 478888888864433
No 473
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.27 E-value=2.1e-06 Score=85.50 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=38.6
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh--hhhcCC-CCeEEEEecChhhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR--TKEEPY-KHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~--~~l~~~-g~tVIiVTHD~~e~~~~~ 571 (604)
.+|.++|+||| ..|+++.....+... ..+.+. +.++|++||+.+.+..+.
T Consensus 108 ~~~sLvLlDE~-~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 108 TPDSLVILDEL-GRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCCeEEEEecc-cCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 46999999999 999997764444333 234444 899999999999988774
No 474
>PRK13695 putative NTPase; Provisional
Probab=98.27 E-value=4.9e-07 Score=86.68 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=42.2
Q ss_pred cCCCCcccccCCC-cCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhh---hhhhhhhccCCCcccCc
Q psy3589 520 LMPPQYLSKQEYW-EKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAE---GKNVKRKHKGEETEEDE 583 (604)
Q Consensus 520 ~~pP~lLLLDEP~-T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e---~~~~~~~~~~~~~~~~~ 583 (604)
+..|+++++|||| +.+++......+..+ + +.+.++|+|+|+... +.++.+-+.|.....+.
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~--~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~ 158 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEV--L-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTP 158 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHH--H-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcc
Confidence 3469999999941 567776666666666 5 678999999999643 44555555665554443
No 475
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.27 E-value=5.3e-06 Score=76.65 Aligned_cols=99 Identities=22% Similarity=0.261 Sum_probs=76.2
Q ss_pred CCCcch--hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCC-CHHhHHHHHHHHH
Q psy3589 177 DLSYFE--LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLA-PAPLVLAWKHYFQ 253 (604)
Q Consensus 177 ~lt~fE--~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv-~~~~~~~w~~yf~ 253 (604)
+-||=| -|-.+.+.|--....||+|++|.||..|...++|.+...+ ++|+|-|+||+|+. +......-.++++
T Consensus 41 IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f----~~pvIGVITK~Dl~~~~~~i~~a~~~L~ 116 (143)
T PF10662_consen 41 IDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF----NKPVIGVITKIDLPSDDANIERAKKWLK 116 (143)
T ss_pred EECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc----CCCEEEEEECccCccchhhHHHHHHHHH
Confidence 445633 5778899999999999999999999999999999876543 58999999999998 4445555456666
Q ss_pred hhCCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHH
Q psy3589 254 SKFPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQ 308 (604)
Q Consensus 254 ~~~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~ 308 (604)
..+- -.++.+|+. +++|+++|.+.+.
T Consensus 117 ~aG~-~~if~vS~~----------------------------~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 117 NAGV-KEIFEVSAV----------------------------TGEGIEELKDYLE 142 (143)
T ss_pred HcCC-CCeEEEECC----------------------------CCcCHHHHHHHHh
Confidence 6542 346677876 6678888877653
No 476
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.26 E-value=6.8e-06 Score=76.23 Aligned_cols=75 Identities=23% Similarity=0.316 Sum_probs=59.2
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCC-CHHhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 192 WRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLA-PAPLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 192 wrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv-~~~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
...+..+|++++|+|+.+|.......+...+. ..+.|.++|+||+|+. .......|..++...++..+++.+|+.
T Consensus 77 ~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 152 (168)
T cd04163 77 WSALKDVDLVLFVVDASEPIGEGDEFILELLK-KSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISAL 152 (168)
T ss_pred HHHHHhCCEEEEEEECCCccCchHHHHHHHHH-HhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEec
Confidence 34567899999999999996555555656555 3458999999999998 566778888888888766788888886
No 477
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.25 E-value=6.8e-06 Score=79.89 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh----HHHHHHHHHhh-----C
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL----VLAWKHYFQSK-----F 256 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~----~~~w~~yf~~~-----~ 256 (604)
.++++.++.+..+|++++|+|++............+. ...++|+|+|+||+|++.... ...+.++|... +
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRF 158 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3577788888999999999999976533222111222 234689999999999986543 33444444322 3
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+++++++||+ ++.|+.+|++.+...
T Consensus 159 ~~~~vi~iSa~----------------------------~g~gi~~L~~~l~~~ 184 (192)
T cd01889 159 KNSPIIPVSAK----------------------------PGGGEAELGKDLNNL 184 (192)
T ss_pred CCCCEEEEecc----------------------------CCCCHHHHHHHHHhc
Confidence 45788999997 567888888877653
No 478
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.24 E-value=7e-06 Score=76.62 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=48.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh----HHHHHHHHHhh-CCCceEEEEe
Q psy3589 191 LWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL----VLAWKHYFQSK-FPKLTILCFT 265 (604)
Q Consensus 191 lwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~----~~~w~~yf~~~-~p~~~vv~~S 265 (604)
+...+..||++|+|+|++++...........+.....+|+|+|+||+|+.+... ...+.+++... +.+.+++++|
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 345677899999999998754332222222222122358999999999987632 24455555542 1246788899
Q ss_pred ec
Q psy3589 266 SY 267 (604)
Q Consensus 266 a~ 267 (604)
|+
T Consensus 148 a~ 149 (164)
T cd04171 148 AV 149 (164)
T ss_pred CC
Confidence 87
No 479
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.24 E-value=3e-06 Score=91.09 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
.--++.|..++.||+||+|+|++.|+...++.++..+ ..++|+|+|+||+||.++..... + +..++..++.+|
T Consensus 285 iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~--~~~~~~i~v~NK~DL~~~~~~~~----~-~~~~~~~~i~iS 357 (454)
T COG0486 285 IGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELL--PKKKPIIVVLNKADLVSKIELES----E-KLANGDAIISIS 357 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc--ccCCCEEEEEechhcccccccch----h-hccCCCceEEEE
Confidence 5677899999999999999999999877787777633 34799999999999998765322 2 222344678899
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
++ ++.|++.|.+.+..++.
T Consensus 358 a~----------------------------t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 358 AK----------------------------TGEGLDALREAIKQLFG 376 (454)
T ss_pred ec----------------------------CccCHHHHHHHHHHHHh
Confidence 87 56789999998887654
No 480
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.23 E-value=1.6e-06 Score=84.84 Aligned_cols=59 Identities=32% Similarity=0.380 Sum_probs=43.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccC-cCcccceeEEEE---ecCCeEEecCCCccCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSR-TPGHTKHFQTIF---LTDNIRLCDCPGLVFPS 426 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~-i~g~t~~~q~~~---~~~~~~l~D~pGl~~p~ 426 (604)
++|+|||.+|||||||+|+|+|.....++. .++.|+..+... ....+.++||||+....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 479999999999999999999987654442 345666554432 23457899999997543
No 481
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.23 E-value=2.2e-06 Score=83.11 Aligned_cols=60 Identities=40% Similarity=0.628 Sum_probs=47.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC-CccccCcCcccceeEEEEecCCeEEecCCCccC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~-~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
+...+|+|+|.+|||||||+|.|++.. .+..+..+|.|...........+.++|+||+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~ 82 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGY 82 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCC
Confidence 456789999999999999999999964 445566677777766555556788999999754
No 482
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.23 E-value=4.7e-07 Score=85.22 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=48.1
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
-+..|+|+.|+||++. .++..|...+. +.++|+|+|+||+|++......--.+.+.+.+ ++++|++||+
T Consensus 76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~-e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~sa~ 144 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNL--ERNLYLTLQLL-ELGIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVSAR 144 (156)
T ss_dssp HTSSSEEEEEEEGGGH--HHHHHHHHHHH-HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEBTT
T ss_pred hcCCCEEEEECCCCCH--HHHHHHHHHHH-HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEEeC
Confidence 4789999999999873 34444555555 57899999999999987653222233444444 5789999997
No 483
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.22 E-value=2.6e-06 Score=81.83 Aligned_cols=60 Identities=40% Similarity=0.615 Sum_probs=48.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC-CccccCcCcccceeEEEEecCCeEEecCCCccC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~-~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
.+..+|+|+|.+|||||||+|.|.+.. ....+..++.|.....+.....+.++|+||+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~ 76 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGY 76 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCcc
Confidence 456799999999999999999999975 455667778887766555556788999999754
No 484
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.21 E-value=6e-06 Score=91.25 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCC------CCCCCC---hhHHHHhh---------ccCCCcEEEEEeCCCCCCHHhHHH
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRY------PCLMFP---PTLYDYVT---------GTLGKDMILVMNKIDLAPAPLVLA 247 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~------Pl~~~~---~~L~~yv~---------~~~~K~~ILVlNK~DLv~~~~~~~ 247 (604)
.+-.+.++.+++||+||+|||+.. |+..+. ..|..|.. ....+|+|+|+||+||........
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e 304 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE 304 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH
Confidence 344566778999999999999964 332211 13444442 123689999999999976554443
Q ss_pred H-HHHHHhhCCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 248 W-KHYFQSKFPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 248 w-~~yf~~~~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+ ..++... +++++++||. ++.|+.+|+..+.++
T Consensus 305 ~l~~~l~~~--g~~Vf~ISA~----------------------------tgeGLdEL~~~L~el 338 (500)
T PRK12296 305 FVRPELEAR--GWPVFEVSAA----------------------------SREGLRELSFALAEL 338 (500)
T ss_pred HHHHHHHHc--CCeEEEEECC----------------------------CCCCHHHHHHHHHHH
Confidence 3 3344443 4678899987 557888888877664
No 485
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.19 E-value=5e-06 Score=88.13 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc----cCCCcEEEEEeCCCCCCHHhHH-HHHHHHHhhCC
Q psy3589 184 NLETWRQLWRVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG----TLGKDMILVMNKIDLAPAPLVL-AWKHYFQSKFP 257 (604)
Q Consensus 184 Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~~-~w~~yf~~~~p 257 (604)
+..++.+.++.+++||++|+|+|+.++..... ..+...+.. ..++|+|+|+||+||++..... .....+....
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~- 301 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL- 301 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc-
Confidence 44577888999999999999999986542111 112222221 1368999999999998655322 2223332332
Q ss_pred CceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 258 KLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 258 ~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+..++++||+ ++.|+++|++.+...
T Consensus 302 ~~~i~~iSAk----------------------------tg~GI~eL~~~L~~~ 326 (335)
T PRK12299 302 GGPVFLISAV----------------------------TGEGLDELLRALWEL 326 (335)
T ss_pred CCCEEEEEcC----------------------------CCCCHHHHHHHHHHH
Confidence 3578889987 557888888877654
No 486
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.19 E-value=2.4e-06 Score=87.97 Aligned_cols=57 Identities=32% Similarity=0.489 Sum_probs=45.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE-EEEe--cCCeEEecCCCccCC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ-TIFL--TDNIRLCDCPGLVFP 425 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q-~~~~--~~~~~l~D~pGl~~p 425 (604)
+|+|+|++|||||||+|+|+|.....++..+++|++.. .+.. ...+.++||||+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 58999999999999999999988777788888887642 2222 234688999998754
No 487
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.19 E-value=2.2e-06 Score=88.11 Aligned_cols=61 Identities=34% Similarity=0.413 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC---CeEEecCCCccCCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLVFPSK 427 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~~p~~ 427 (604)
...++.|.|+||||||||+++|++..+ .+.++|++|+.+...++.. .+.++||||+.....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCCh
Confidence 446899999999999999999999864 5889999999987665542 578999999986544
No 488
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.19 E-value=2.9e-06 Score=86.21 Aligned_cols=60 Identities=30% Similarity=0.378 Sum_probs=46.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFP 425 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p 425 (604)
..++|+|+|.+|||||||+|+|.|.....++...+.|...+.+.. ...+.++||||+...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 458999999999999999999999987667766666666554332 235789999998744
No 489
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.16 E-value=1.5e-05 Score=76.28 Aligned_cols=90 Identities=20% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHH----HHHHHhh------------C
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAW----KHYFQSK------------F 256 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w----~~yf~~~------------~ 256 (604)
..+..+|.+++|+|+..+.......+..++. ..++|+++|+||+|+.++...... .+.+... .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAR-EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHH-HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 4456899999999999887554444445554 357999999999999975433322 2233321 1
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
...+++++||+ .+.|+.+++..+...+
T Consensus 160 ~~~~v~~~Sa~----------------------------~g~gi~~l~~~l~~~l 186 (189)
T cd00881 160 LLVPIVPGSAL----------------------------TGIGVEELLEAIVEHL 186 (189)
T ss_pred CcceEEEEecc----------------------------cCcCHHHHHHHHHhhC
Confidence 24677888886 5567888887776644
No 490
>PRK13768 GTPase; Provisional
Probab=98.16 E-value=1.2e-05 Score=82.03 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCCCCcchhhHHHHHHHHHHhhh--cCEEEEEEecCCCCCCCChhHHHHhh----ccCCCcEEEEEeCCCCCCHHhHHHH
Q psy3589 175 WKDLSYFELNLETWRQLWRVLEM--SDIILIIIDIRYPCLMFPPTLYDYVT----GTLGKDMILVMNKIDLAPAPLVLAW 248 (604)
Q Consensus 175 ~~~lt~fE~Nle~wRQlwrviE~--sDiVl~VvDaR~Pl~~~~~~L~~yv~----~~~~K~~ILVlNK~DLv~~~~~~~w 248 (604)
++...+|.. -..|+.+.+.++. +++|++|+|++.+....+.....++. ...++|+|+|+||+|+++.......
T Consensus 105 ~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~ 183 (253)
T PRK13768 105 PGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERI 183 (253)
T ss_pred CcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHH
Confidence 344555654 4567777788877 89999999998765433322222221 1357899999999999987665443
Q ss_pred HHHHH----------------------------hhCCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhH
Q psy3589 249 KHYFQ----------------------------SKFPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGA 300 (604)
Q Consensus 249 ~~yf~----------------------------~~~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 300 (604)
.+++. ...+..+++.+|+. .+.|+
T Consensus 184 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~----------------------------~~~gl 235 (253)
T PRK13768 184 LKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAK----------------------------TGEGF 235 (253)
T ss_pred HHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECC----------------------------CCcCH
Confidence 34333 22344577888876 45788
Q ss_pred HHHHHHHHHHhccc
Q psy3589 301 KKLLEACQTIVQGA 314 (604)
Q Consensus 301 ~~Ll~~i~~~~~~~ 314 (604)
++|++.+.+.++.-
T Consensus 236 ~~L~~~I~~~l~~~ 249 (253)
T PRK13768 236 DELYAAIQEVFCGG 249 (253)
T ss_pred HHHHHHHHHHcCCC
Confidence 89999888876543
No 491
>PTZ00258 GTP-binding protein; Provisional
Probab=98.13 E-value=4e-06 Score=90.07 Aligned_cols=62 Identities=32% Similarity=0.445 Sum_probs=47.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEec------------------CCeEEecCCCccC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFLT------------------DNIRLCDCPGLVF 424 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~~------------------~~~~l~D~pGl~~ 424 (604)
....+|||||.||||||||||+|++.. +.++..|++|..... +.+. ..+.++|+||++.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 345789999999999999999998876 468888999865432 2211 2378999999986
Q ss_pred CCC
Q psy3589 425 PSK 427 (604)
Q Consensus 425 p~~ 427 (604)
...
T Consensus 98 ga~ 100 (390)
T PTZ00258 98 GAS 100 (390)
T ss_pred CCc
Confidence 543
No 492
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.13 E-value=9.4e-06 Score=74.93 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEee
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
.+++.+..+.++|++++|+|+.++....+..+... ..++|+|+|+||+|+.+.... + ......+++.+||
T Consensus 70 ~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~vi~v~nK~D~~~~~~~------~-~~~~~~~~~~~Sa 139 (157)
T cd04164 70 GIERAREAIEEADLVLFVIDASRGLDEEDLEILEL---PADKPIIVVLNKSDLLPDSEL------L-SLLAGKPIIAISA 139 (157)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh---hcCCCEEEEEEchhcCCcccc------c-cccCCCceEEEEC
Confidence 35566777889999999999999876555544333 347999999999999876543 1 1222457888888
Q ss_pred c
Q psy3589 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 140 ~ 140 (157)
T cd04164 140 K 140 (157)
T ss_pred C
Confidence 6
No 493
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.12 E-value=9.8e-06 Score=87.65 Aligned_cols=99 Identities=19% Similarity=0.116 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCC----hhHHHHhhc----cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCC
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFP----PTLYDYVTG----TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFP 257 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~----~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p 257 (604)
.+..++++.++++|+||+|+|+...-...+ ..+.+.+.. ..++|.|||+||+|+++..........+.+.++
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 345566678999999999999872100001 122222221 136899999999999877655555555544432
Q ss_pred C-ceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 258 K-LTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 258 ~-~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
. ..++++||+ .+.|+.+|++.+...++
T Consensus 306 ~~~~Vi~ISA~----------------------------tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 306 WEGPVYLISAA----------------------------SGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCCCEEEEECC----------------------------CCcCHHHHHHHHHHHhh
Confidence 2 368889987 45677777777766553
No 494
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.12 E-value=3.8e-06 Score=90.79 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=46.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ec--CCeEEecCCCccCCC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LT--DNIRLCDCPGLVFPS 426 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~--~~~~l~D~pGl~~p~ 426 (604)
.|||||.||||||||||+|++.. +.++..|++|+...... .. +.+.++|+||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 69999999999999999999976 47889999997754432 22 348899999997544
No 495
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.11 E-value=1.4e-05 Score=87.98 Aligned_cols=92 Identities=21% Similarity=0.346 Sum_probs=70.9
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC---CCceEEEEe
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF---PKLTILCFT 265 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~---p~~~vv~~S 265 (604)
....+.+.++|++|+|+|+..+....+..+..++. ..++|+|+|+||+|+++......+..++...+ +.++++++|
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~-~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEGITEQDLRIAGLAL-EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 34567899999999999999998776666666665 45799999999999997766666766666544 346788899
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
|. ++.|+.++++.+..
T Consensus 326 A~----------------------------~~~gv~~l~~~i~~ 341 (435)
T PRK00093 326 AL----------------------------TGQGVDKLLEAIDE 341 (435)
T ss_pred CC----------------------------CCCCHHHHHHHHHH
Confidence 87 45677888777655
No 496
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.11 E-value=1.7e-05 Score=79.52 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHHHHHHhh--hcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHH
Q psy3589 187 TWRQLWRVLE--MSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLA 247 (604)
Q Consensus 187 ~wRQlwrviE--~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~ 247 (604)
+.+...+.+. .+|++++|+|++.++......+..++. ..++|+|+|+||+|+++......
T Consensus 97 ~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~-~~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 97 YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLAL-ALNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCEEEEEECccccCHHHHHH
Confidence 3455566664 799999999999887655555666665 56789999999999988755433
No 497
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.10 E-value=1.9e-05 Score=72.09 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=57.1
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHH---HHHHhhCCCceEEEE
Q psy3589 188 WRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWK---HYFQSKFPKLTILCF 264 (604)
Q Consensus 188 wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~---~yf~~~~p~~~vv~~ 264 (604)
+......+..+|++++|+|+..+.......+..+.. ..++|+++|+||+|+++......|. .......+..+++++
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLR-ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAV 144 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEE
Confidence 445556778899999999999987655554233332 4578999999999999987777763 223344456778888
Q ss_pred eec
Q psy3589 265 TSY 267 (604)
Q Consensus 265 Sa~ 267 (604)
||.
T Consensus 145 sa~ 147 (163)
T cd00880 145 SAL 147 (163)
T ss_pred eee
Confidence 886
No 498
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.10 E-value=4.7e-06 Score=77.56 Aligned_cols=56 Identities=41% Similarity=0.687 Sum_probs=42.4
Q ss_pred EEEEcCCCCcHHHHHHHHHC-CCCccccCcCcccceeEEEEecCCeEEecCCCccCC
Q psy3589 370 IGCVGQPNVGKSSLMNAIMG-RKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFP 425 (604)
Q Consensus 370 vgLVG~nGvGKSTLLn~L~G-~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p 425 (604)
|+|+|.+|||||||+|.|++ ...+..+..++.|.....+.......++|+||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 78999999999999999993 333334556666766666666667889999997654
No 499
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.10 E-value=1.2e-05 Score=74.51 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
++++..... +.+|++|+|+|+..+.. ...+...+. ..++|+|+|+||+|+.+......+...+...+ +.+++.+|
T Consensus 64 ~~~~~~~~~-~~~d~vi~v~d~~~~~~--~~~~~~~~~-~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~iS 138 (158)
T cd01879 64 KVARDFLLG-EKPDLIVNVVDATNLER--NLYLTLQLL-ELGLPVVVALNMIDEAEKRGIKIDLDKLSELL-GVPVVPTS 138 (158)
T ss_pred HHHHHHhcC-CCCcEEEEEeeCCcchh--HHHHHHHHH-HcCCCEEEEEehhhhcccccchhhHHHHHHhh-CCCeEEEE
Confidence 445554444 78999999999987532 233333343 35799999999999987654444444444443 46788899
Q ss_pred ec
Q psy3589 266 SY 267 (604)
Q Consensus 266 a~ 267 (604)
|.
T Consensus 139 a~ 140 (158)
T cd01879 139 AR 140 (158)
T ss_pred cc
Confidence 87
No 500
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.09 E-value=2e-06 Score=106.57 Aligned_cols=67 Identities=13% Similarity=-0.042 Sum_probs=56.2
Q ss_pred chhhhccCcccHHHHHHHHHHhhccceeeeecCCC--CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChh
Q psy3589 489 SYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP--QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEA 565 (604)
Q Consensus 489 g~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP--~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~ 565 (604)
...++|||+.++..+|+++... | .++||||| |++||+..+..|.++ ..+++.|.|||+||||++
T Consensus 473 ~~~tLSGGE~QRV~LAraL~~~------------p~g~lLILDEP-TagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 473 ALATLSGGEQERTALAKHLGAE------------LIGITYILDEP-SIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred chhhCCHHHHHHHHHHHHHhcC------------CCCcEEEEECC-ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 3445679999999999988444 8 79999999 999999999998888 666667999999999998
Q ss_pred hhh
Q psy3589 566 EGK 568 (604)
Q Consensus 566 e~~ 568 (604)
.+.
T Consensus 540 vi~ 542 (1809)
T PRK00635 540 MIS 542 (1809)
T ss_pred HHH
Confidence 543
Done!