Query psy3589
Match_columns 604
No_of_seqs 758 out of 3147
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 20:29:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 1.9E-32 6.4E-37 281.5 23.0 265 178-521 3-277 (282)
2 3cnl_A YLQF, putative uncharac 100.0 1.7E-30 6E-35 264.1 11.6 241 179-522 2-246 (262)
3 4g1u_C Hemin import ATP-bindin 99.8 8.8E-22 3E-26 200.3 6.4 182 368-581 38-229 (266)
4 3gfo_A Cobalt import ATP-bindi 99.8 5.8E-22 2E-26 202.4 4.7 176 369-581 36-225 (275)
5 1b0u_A Histidine permease; ABC 99.8 8.2E-22 2.8E-26 200.2 5.6 177 368-580 33-233 (262)
6 3tif_A Uncharacterized ABC tra 99.8 5.5E-22 1.9E-26 198.3 3.8 177 368-580 32-225 (235)
7 3tui_C Methionine import ATP-b 99.8 1.2E-21 4E-26 206.8 6.3 178 368-581 55-245 (366)
8 1g6h_A High-affinity branched- 99.8 1.4E-21 4.9E-26 197.9 6.0 77 491-580 152-233 (257)
9 2pcj_A ABC transporter, lipopr 99.8 7.8E-22 2.7E-26 195.8 3.9 162 369-568 32-204 (224)
10 2onk_A Molybdate/tungstate ABC 99.8 1.5E-21 5.3E-26 195.6 5.7 175 368-580 25-207 (240)
11 3fvq_A Fe(3+) IONS import ATP- 99.8 4.2E-21 1.5E-25 202.3 9.3 164 369-570 32-205 (359)
12 2olj_A Amino acid ABC transpor 99.8 1.4E-21 4.9E-26 198.4 5.1 176 368-580 51-239 (263)
13 1ji0_A ABC transporter; ATP bi 99.8 4.6E-21 1.6E-25 192.2 8.6 174 369-579 34-218 (240)
14 2nq2_C Hypothetical ABC transp 99.8 9.6E-21 3.3E-25 191.3 10.8 155 369-570 33-195 (253)
15 1vpl_A ABC transporter, ATP-bi 99.8 1.9E-21 6.5E-26 196.8 5.4 175 368-579 42-225 (256)
16 3rlf_A Maltose/maltodextrin im 99.8 3.8E-21 1.3E-25 204.1 7.1 164 369-570 31-200 (381)
17 2yz2_A Putative ABC transporte 99.8 9.1E-21 3.1E-25 192.9 8.5 167 368-570 34-204 (266)
18 2qi9_C Vitamin B12 import ATP- 99.8 5.2E-20 1.8E-24 185.4 12.7 170 369-580 28-213 (249)
19 2ihy_A ABC transporter, ATP-bi 99.8 6.9E-21 2.4E-25 195.0 6.3 178 368-580 48-243 (279)
20 1g29_1 MALK, maltose transport 99.8 2E-20 7E-25 198.7 9.5 164 369-570 31-206 (372)
21 1sgw_A Putative ABC transporte 99.8 1.7E-21 5.7E-26 192.0 0.9 160 369-570 37-199 (214)
22 2yyz_A Sugar ABC transporter, 99.8 1.7E-20 5.9E-25 198.1 8.4 164 369-570 31-200 (359)
23 1oxx_K GLCV, glucose, ABC tran 99.8 1.3E-20 4.4E-25 199.0 7.1 164 369-570 33-207 (353)
24 1z47_A CYSA, putative ABC-tran 99.8 1.3E-20 4.6E-25 198.5 6.9 164 369-570 43-212 (355)
25 3d31_A Sulfate/molybdate ABC t 99.8 8.2E-21 2.8E-25 199.9 4.7 163 369-570 28-194 (348)
26 1v43_A Sugar-binding transport 99.8 2.3E-20 7.9E-25 198.0 7.9 165 368-570 38-208 (372)
27 2it1_A 362AA long hypothetical 99.8 1E-20 3.5E-25 200.1 4.9 164 369-570 31-200 (362)
28 2d2e_A SUFC protein; ABC-ATPas 99.8 1.5E-20 5.2E-25 189.6 5.6 75 493-580 144-224 (250)
29 2pjz_A Hypothetical protein ST 99.8 8.5E-20 2.9E-24 185.3 7.3 158 368-570 31-191 (263)
30 2zu0_C Probable ATP-dependent 99.8 8E-20 2.7E-24 186.0 6.9 75 493-580 165-245 (267)
31 2ff7_A Alpha-hemolysin translo 99.8 1.7E-19 5.8E-24 181.5 8.5 179 368-579 36-222 (247)
32 1t9h_A YLOQ, probable GTPase E 99.8 9.4E-20 3.2E-24 188.5 6.5 143 194-426 83-238 (307)
33 2ixe_A Antigen peptide transpo 99.8 5.5E-20 1.9E-24 187.6 3.7 175 368-579 46-235 (271)
34 1mv5_A LMRA, multidrug resista 99.8 8.4E-20 2.9E-24 183.3 4.2 181 368-580 29-217 (243)
35 3nh6_A ATP-binding cassette SU 99.8 2.2E-19 7.4E-24 185.9 7.1 180 368-580 81-268 (306)
36 2rcn_A Probable GTPase ENGC; Y 99.8 4.8E-19 1.6E-23 186.6 8.1 146 189-424 122-280 (358)
37 2ghi_A Transport protein; mult 99.8 6.7E-19 2.3E-23 178.5 8.6 178 368-579 47-232 (260)
38 2pze_A Cystic fibrosis transme 99.8 2.4E-18 8.1E-23 171.2 11.9 168 369-579 36-208 (229)
39 3ec1_A YQEH GTPase; atnos1, at 99.7 9.1E-18 3.1E-22 178.6 15.8 149 193-426 67-226 (369)
40 2cbz_A Multidrug resistance-as 99.7 2.4E-18 8.3E-23 172.1 10.6 161 368-570 32-195 (237)
41 3ozx_A RNAse L inhibitor; ATP 99.7 3.3E-18 1.1E-22 190.2 10.5 156 368-570 295-452 (538)
42 3h2y_A GTPase family protein; 99.7 7.7E-18 2.6E-22 179.1 12.6 156 186-426 57-225 (368)
43 2yv5_A YJEQ protein; hydrolase 99.7 1.3E-17 4.4E-22 172.7 13.3 140 194-423 76-227 (302)
44 2bbs_A Cystic fibrosis transme 99.7 7E-18 2.4E-22 173.5 10.1 168 368-579 65-237 (290)
45 3ozx_A RNAse L inhibitor; ATP 99.7 3.5E-18 1.2E-22 190.0 8.4 67 490-570 136-203 (538)
46 1yqt_A RNAse L inhibitor; ATP- 99.7 3.2E-18 1.1E-22 190.6 6.9 68 490-570 156-224 (538)
47 3bk7_A ABC transporter ATP-bin 99.7 4.1E-18 1.4E-22 191.9 7.7 68 490-570 226-294 (607)
48 3bk7_A ABC transporter ATP-bin 99.7 5.8E-18 2E-22 190.7 8.8 154 368-570 383-538 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.7 5.9E-18 2E-22 188.4 8.2 154 368-570 313-468 (538)
50 3gd7_A Fusion complex of cysti 99.7 1.9E-18 6.4E-23 184.5 4.0 168 368-570 48-220 (390)
51 3j16_B RLI1P; ribosome recycli 99.7 5.3E-18 1.8E-22 190.8 5.9 68 490-570 219-287 (608)
52 3j16_B RLI1P; ribosome recycli 99.7 1.6E-17 5.5E-22 186.9 8.7 153 369-570 380-534 (608)
53 3b5x_A Lipid A export ATP-bind 99.7 2.9E-17 1E-21 184.8 10.2 181 368-580 370-558 (582)
54 1u0l_A Probable GTPase ENGC; p 99.7 1E-16 3.6E-21 165.8 13.4 143 194-426 81-235 (301)
55 3b60_A Lipid A export ATP-bind 99.7 5.9E-17 2E-21 182.4 9.8 180 368-579 370-557 (582)
56 2yl4_A ATP-binding cassette SU 99.7 3.7E-17 1.3E-21 184.5 7.8 181 368-580 371-561 (595)
57 4a82_A Cystic fibrosis transme 99.7 3.6E-17 1.2E-21 184.0 5.8 180 368-580 368-555 (578)
58 3qf4_B Uncharacterized ABC tra 99.6 3.5E-17 1.2E-21 184.8 3.5 180 368-580 382-569 (598)
59 1mky_A Probable GTP-binding pr 99.6 6.3E-16 2.2E-20 168.1 13.3 167 186-423 70-239 (439)
60 3qf4_A ABC transporter, ATP-bi 99.6 1.3E-16 4.6E-21 179.6 7.6 180 368-580 370-557 (587)
61 2iw3_A Elongation factor 3A; a 99.6 1.6E-15 5.6E-20 177.1 12.6 66 490-570 546-611 (986)
62 3ux8_A Excinuclease ABC, A sub 99.6 2E-16 6.7E-21 181.0 3.1 71 490-573 200-273 (670)
63 2hjg_A GTP-binding protein ENG 99.6 1.8E-15 6.1E-20 164.4 9.2 162 186-424 71-235 (436)
64 2iw3_A Elongation factor 3A; a 99.6 1.6E-15 5.5E-20 177.1 7.7 66 490-570 899-964 (986)
65 3g5u_A MCG1178, multidrug resi 99.6 1.4E-15 4.7E-20 185.1 7.0 182 368-580 1060-1249(1284)
66 3g5u_A MCG1178, multidrug resi 99.6 2E-15 6.7E-20 183.7 7.4 171 368-571 417-592 (1284)
67 4f4c_A Multidrug resistance pr 99.5 1.3E-15 4.4E-20 185.8 2.5 183 367-580 1105-1295(1321)
68 3b85_A Phosphate starvation-in 99.5 2.2E-15 7.5E-20 147.6 2.7 64 496-578 108-172 (208)
69 4gp7_A Metallophosphoesterase; 99.5 1.3E-15 4.5E-20 144.2 0.8 68 494-574 85-169 (171)
70 4dcu_A GTP-binding protein ENG 99.5 4.1E-14 1.4E-18 154.6 11.4 162 186-424 91-255 (456)
71 1ye8_A Protein THEP1, hypothet 99.5 2E-14 6.9E-19 137.3 7.1 76 493-583 77-162 (178)
72 4f4c_A Multidrug resistance pr 99.5 8E-15 2.7E-19 178.8 2.4 171 368-571 445-620 (1321)
73 1tq4_A IIGP1, interferon-induc 99.4 1.2E-13 3.9E-18 148.5 8.6 153 368-570 70-243 (413)
74 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 2.5E-13 8.7E-18 144.1 10.7 72 492-570 279-351 (365)
75 3ux8_A Excinuclease ABC, A sub 99.4 5.8E-14 2E-18 160.5 6.0 73 491-573 542-615 (670)
76 4aby_A DNA repair protein RECN 99.4 4.6E-14 1.6E-18 151.8 4.8 64 493-570 296-362 (415)
77 2e87_A Hypothetical protein PH 99.4 2.2E-14 7.6E-19 151.7 -1.2 164 198-424 58-226 (357)
78 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.1E-14 3.9E-19 158.7 -6.5 58 492-565 235-299 (460)
79 3pih_A Uvrabc system protein A 99.3 1.1E-12 3.8E-17 153.0 9.1 73 491-573 804-877 (916)
80 1znw_A Guanylate kinase, GMP k 99.3 8.6E-14 3E-18 135.6 -2.9 56 514-570 133-194 (207)
81 2vf7_A UVRA2, excinuclease ABC 99.3 1.5E-12 5.1E-17 150.7 5.4 71 490-570 728-799 (842)
82 3sop_A Neuronal-specific septi 99.2 2.7E-12 9.2E-17 130.6 4.9 33 368-400 3-35 (270)
83 2ygr_A Uvrabc system protein A 99.2 7.5E-12 2.6E-16 145.9 7.7 71 490-570 861-932 (993)
84 2r6f_A Excinuclease ABC subuni 99.2 6E-12 2.1E-16 146.2 6.0 70 491-570 844-914 (972)
85 3qkt_A DNA double-strand break 99.1 5.8E-11 2E-15 124.6 9.1 69 492-567 248-317 (339)
86 1e69_A Chromosome segregation 99.1 4.9E-11 1.7E-15 124.2 6.0 67 492-568 219-286 (322)
87 2pt7_A CAG-ALFA; ATPase, prote 99.0 2.6E-10 9E-15 119.2 5.9 57 495-570 225-281 (330)
88 2ehv_A Hypothetical protein PH 99.0 2.1E-10 7.1E-15 113.7 4.8 46 521-567 134-185 (251)
89 2eyu_A Twitching motility prot 99.0 3.7E-10 1.3E-14 114.2 6.1 50 500-568 88-137 (261)
90 3thx_B DNA mismatch repair pro 99.0 2.3E-10 8E-15 133.7 5.0 52 520-572 750-804 (918)
91 2i3b_A HCR-ntpase, human cance 98.9 8.1E-11 2.8E-15 113.3 -0.5 65 518-585 101-172 (189)
92 3thx_A DNA mismatch repair pro 98.9 5.5E-10 1.9E-14 130.9 5.8 49 520-569 739-790 (934)
93 1pui_A ENGB, probable GTP-bind 98.9 1.8E-10 6E-15 111.2 -0.2 59 366-424 25-84 (210)
94 2qnr_A Septin-2, protein NEDD5 98.9 4E-10 1.4E-14 116.3 2.4 30 367-396 18-48 (301)
95 4a74_A DNA repair and recombin 98.9 8.6E-10 2.9E-14 107.8 4.5 26 368-393 26-51 (231)
96 3jvv_A Twitching mobility prot 98.8 8.9E-10 3E-14 116.2 3.3 47 520-573 194-240 (356)
97 1pzn_A RAD51, DNA repair and r 98.8 2.5E-09 8.4E-14 112.7 5.9 64 499-568 213-290 (349)
98 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 2E-09 6.8E-14 99.4 4.5 69 491-566 56-125 (148)
99 3aez_A Pantothenate kinase; tr 98.8 4.4E-10 1.5E-14 116.6 -1.0 29 366-394 89-117 (312)
100 1z6g_A Guanylate kinase; struc 98.8 4.3E-11 1.5E-15 117.7 -8.4 54 516-570 139-200 (218)
101 1tf7_A KAIC; homohexamer, hexa 98.8 2.3E-09 7.9E-14 119.0 4.4 62 498-567 121-188 (525)
102 1s96_A Guanylate kinase, GMP k 98.8 2.2E-09 7.6E-14 105.6 3.0 44 523-576 108-151 (219)
103 3b9q_A Chloroplast SRP recepto 98.8 1.2E-09 4.2E-14 112.7 1.2 32 367-398 100-131 (302)
104 3szr_A Interferon-induced GTP- 98.7 2.2E-08 7.4E-13 113.0 10.7 50 518-567 142-199 (608)
105 1ewq_A DNA mismatch repair pro 98.7 2.1E-09 7.3E-14 123.7 2.2 47 520-568 653-702 (765)
106 2o8b_B DNA mismatch repair pro 98.7 7.5E-09 2.6E-13 122.7 6.8 50 520-570 866-918 (1022)
107 2og2_A Putative signal recogni 98.7 2.9E-09 9.8E-14 112.3 1.8 32 367-398 157-188 (359)
108 1wb9_A DNA mismatch repair pro 98.7 5E-09 1.7E-13 121.3 3.9 49 520-569 684-735 (800)
109 3ec2_A DNA replication protein 98.7 8E-09 2.7E-13 97.7 4.5 46 522-567 100-146 (180)
110 2qag_C Septin-7; cell cycle, c 98.7 4.1E-08 1.4E-12 105.6 10.1 44 518-566 132-179 (418)
111 1tf7_A KAIC; homohexamer, hexa 98.6 3.2E-09 1.1E-13 117.8 0.0 58 493-564 354-417 (525)
112 3asz_A Uridine kinase; cytidin 98.6 5E-10 1.7E-14 108.6 -6.6 47 518-565 107-162 (211)
113 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 8.8E-09 3E-13 109.8 2.3 59 367-425 20-98 (392)
114 3pih_A Uvrabc system protein A 98.6 1.6E-08 5.5E-13 118.1 3.6 72 490-572 462-534 (916)
115 3iev_A GTP-binding protein ERA 98.5 2.3E-07 8E-12 95.7 9.8 103 182-313 77-182 (308)
116 2jeo_A Uridine-cytidine kinase 98.5 2.4E-07 8.1E-12 92.2 8.9 45 518-572 129-174 (245)
117 2w0m_A SSO2452; RECA, SSPF, un 98.5 9.7E-08 3.3E-12 93.0 5.6 43 521-564 120-168 (235)
118 2ygr_A Uvrabc system protein A 98.5 6.4E-08 2.2E-12 113.0 4.4 71 489-570 518-589 (993)
119 1cr0_A DNA primase/helicase; R 98.5 1.5E-07 5.1E-12 96.3 6.3 45 519-564 144-197 (296)
120 2r6f_A Excinuclease ABC subuni 98.4 4.8E-08 1.6E-12 113.7 2.5 71 490-571 502-573 (972)
121 1nlf_A Regulatory protein REPA 98.4 1.9E-07 6.4E-12 94.8 6.6 48 520-568 131-185 (279)
122 2ewv_A Twitching motility prot 98.4 1.6E-07 5.5E-12 99.6 6.1 27 368-394 137-163 (372)
123 4dhe_A Probable GTP-binding pr 98.4 6.3E-07 2.1E-11 86.9 9.8 94 190-312 108-210 (223)
124 1rj9_A FTSY, signal recognitio 98.4 1.5E-07 5.2E-12 97.1 5.1 32 367-398 102-133 (304)
125 2qag_B Septin-6, protein NEDD5 98.4 4.8E-07 1.7E-11 97.1 8.8 46 521-567 175-222 (427)
126 2vf7_A UVRA2, excinuclease ABC 98.4 7.1E-08 2.4E-12 111.8 2.0 68 490-570 377-447 (842)
127 4ad8_A DNA repair protein RECN 98.4 1.3E-07 4.5E-12 104.6 3.8 63 494-570 399-464 (517)
128 2kjq_A DNAA-related protein; s 98.4 2.3E-07 8E-12 85.4 4.6 26 368-393 37-62 (149)
129 2bbw_A Adenylate kinase 4, AK4 98.3 1.9E-07 6.7E-12 92.8 4.0 32 367-398 27-61 (246)
130 3lxx_A GTPase IMAP family memb 98.3 8E-07 2.7E-11 87.8 8.0 60 365-424 27-90 (239)
131 3pqc_A Probable GTP-binding pr 98.3 1E-06 3.5E-11 83.0 8.1 96 187-311 94-192 (195)
132 1udx_A The GTP-binding protein 98.3 3.4E-07 1.2E-11 98.3 5.1 54 369-423 159-216 (416)
133 2cvh_A DNA repair and recombin 98.3 1.2E-06 4.2E-11 84.6 8.1 44 522-566 105-158 (220)
134 3kta_B Chromosome segregation 98.3 3.9E-07 1.3E-11 86.1 4.2 68 493-570 65-133 (173)
135 1wf3_A GTP-binding protein; GT 98.2 2.1E-06 7.1E-11 88.4 9.2 95 187-312 76-172 (301)
136 1lw7_A Transcriptional regulat 98.2 9.1E-07 3.1E-11 93.4 6.6 28 368-395 171-198 (365)
137 2obl_A ESCN; ATPase, hydrolase 98.2 3.1E-07 1.1E-11 96.4 3.0 30 368-397 72-101 (347)
138 1n0w_A DNA repair protein RAD5 98.2 1.7E-06 5.9E-11 84.9 8.0 48 521-569 118-179 (243)
139 4a9a_A Ribosome-interacting GT 98.2 7.2E-07 2.5E-11 94.4 5.6 61 364-425 69-132 (376)
140 1svi_A GTP-binding protein YSX 98.2 1.6E-06 5.5E-11 81.9 6.8 61 365-425 21-82 (195)
141 3pqc_A Probable GTP-binding pr 98.2 2.3E-06 7.8E-11 80.5 7.7 60 365-424 21-80 (195)
142 2gj8_A MNME, tRNA modification 98.2 2.4E-06 8.1E-11 79.8 7.2 57 367-423 4-63 (172)
143 1svi_A GTP-binding protein YSX 98.2 5.5E-06 1.9E-10 78.1 9.9 93 188-310 96-192 (195)
144 4dhe_A Probable GTP-binding pr 98.1 2.3E-06 7.7E-11 82.9 6.0 61 365-425 27-92 (223)
145 1sxj_E Activator 1 40 kDa subu 98.1 2.6E-06 8.9E-11 88.8 6.8 46 520-567 132-177 (354)
146 2dpy_A FLII, flagellum-specifi 98.1 1.2E-06 4.1E-11 94.8 3.9 32 368-399 158-189 (438)
147 3k53_A Ferrous iron transport 98.1 3.2E-06 1.1E-10 85.3 6.1 56 368-424 4-62 (271)
148 3e70_C DPA, signal recognition 98.1 4.2E-07 1.4E-11 94.7 -0.5 33 366-398 128-160 (328)
149 3b1v_A Ferrous iron uptake tra 98.1 5.5E-06 1.9E-10 83.9 7.5 57 367-424 3-61 (272)
150 1ega_A Protein (GTP-binding pr 98.1 3.9E-06 1.3E-10 86.3 6.3 56 368-423 9-67 (301)
151 3lxw_A GTPase IMAP family memb 98.0 4.6E-06 1.6E-10 83.1 6.2 60 365-424 19-82 (247)
152 1wf3_A GTP-binding protein; GT 98.0 5.8E-06 2E-10 85.0 7.0 58 368-425 8-68 (301)
153 3i8s_A Ferrous iron transport 98.0 6.1E-06 2.1E-10 83.6 6.9 59 367-426 3-64 (274)
154 2wji_A Ferrous iron transport 98.0 5.2E-06 1.8E-10 76.7 5.8 55 368-423 4-61 (165)
155 3iev_A GTP-binding protein ERA 98.0 7.1E-06 2.4E-10 84.5 7.4 61 366-426 9-73 (308)
156 1htw_A HI0065; nucleotide-bind 98.0 6.7E-06 2.3E-10 76.4 6.1 37 368-405 34-70 (158)
157 3lda_A DNA repair protein RAD5 98.0 1.4E-05 4.7E-10 85.4 8.9 28 369-396 180-209 (400)
158 2nzj_A GTP-binding protein REM 98.0 1.1E-05 3.8E-10 74.3 7.1 57 367-423 4-63 (175)
159 1xzp_A Probable tRNA modificat 98.0 1.4E-05 4.8E-10 87.4 8.8 88 189-310 315-402 (482)
160 1ega_A Protein (GTP-binding pr 98.0 7.1E-06 2.4E-10 84.3 6.1 92 191-312 82-174 (301)
161 3iby_A Ferrous iron transport 97.9 7.5E-06 2.6E-10 82.1 6.0 58 368-426 2-62 (256)
162 3a1s_A Iron(II) transport prot 97.9 7E-06 2.4E-10 82.4 5.7 58 367-425 5-65 (258)
163 2cxx_A Probable GTP-binding pr 97.9 1.1E-05 3.8E-10 75.5 6.8 55 368-424 2-56 (190)
164 3sjy_A Translation initiation 97.9 1.5E-05 5.2E-10 85.2 8.3 95 190-312 91-191 (403)
165 1h65_A Chloroplast outer envel 97.9 1.3E-05 4.4E-10 80.8 6.6 60 366-425 38-100 (270)
166 1upt_A ARL1, ADP-ribosylation 97.9 1.4E-05 4.9E-10 73.2 6.4 89 194-310 71-166 (171)
167 1w1w_A Structural maintenance 97.9 5.7E-06 1.9E-10 89.3 4.1 67 493-568 334-401 (430)
168 2wjg_A FEOB, ferrous iron tran 97.9 1.3E-05 4.4E-10 75.1 6.1 56 367-423 7-65 (188)
169 2o5v_A DNA replication and rep 97.9 2.6E-06 8.8E-11 89.8 1.1 81 493-580 266-347 (359)
170 3cb4_D GTP-binding protein LEP 97.9 8.7E-06 3E-10 91.3 5.5 93 190-313 87-182 (599)
171 3t5d_A Septin-7; GTP-binding p 97.9 1.4E-05 4.8E-10 80.7 6.5 58 367-424 8-77 (274)
172 1zj6_A ADP-ribosylation factor 97.9 2.1E-05 7.2E-10 73.8 7.3 90 194-311 80-176 (187)
173 1r8s_A ADP-ribosylation factor 97.9 1.7E-05 5.8E-10 72.3 6.5 89 194-310 64-159 (164)
174 2dyk_A GTP-binding protein; GT 97.9 9.4E-06 3.2E-10 73.7 4.6 86 191-309 73-158 (161)
175 4dcu_A GTP-binding protein ENG 97.9 1.4E-05 4.8E-10 86.9 6.6 75 192-267 272-351 (456)
176 3def_A T7I23.11 protein; chlor 97.8 1.8E-05 6.2E-10 79.4 6.8 60 366-425 35-97 (262)
177 2h57_A ADP-ribosylation factor 97.8 1.9E-05 6.6E-10 74.3 6.6 89 194-310 87-184 (190)
178 2xtp_A GTPase IMAP family memb 97.8 1.7E-05 6E-10 79.0 6.6 61 366-426 21-85 (260)
179 2qm8_A GTPase/ATPase; G protei 97.8 3.6E-06 1.2E-10 88.0 0.8 31 367-397 55-85 (337)
180 2ohf_A Protein OLA1, GTP-bindi 97.8 1.4E-05 4.6E-10 85.1 5.0 58 367-425 22-99 (396)
181 1f5n_A Interferon-induced guan 97.8 1.9E-05 6.5E-10 88.2 6.2 62 365-426 36-105 (592)
182 1wb1_A Translation elongation 97.8 4E-05 1.4E-09 83.9 8.7 94 189-311 88-187 (482)
183 3t1o_A Gliding protein MGLA; G 97.8 3E-05 1E-09 72.7 6.6 86 194-309 94-188 (198)
184 4bas_A ADP-ribosylation factor 97.8 1.6E-05 5.4E-10 75.1 4.6 89 194-310 83-186 (199)
185 2qtf_A Protein HFLX, GTP-bindi 97.8 1.7E-05 6E-10 83.6 5.3 58 366-424 178-238 (364)
186 2dyk_A GTP-binding protein; GT 97.8 2E-05 6.9E-10 71.5 5.0 57 368-424 2-61 (161)
187 2qu8_A Putative nucleolar GTP- 97.8 6.1E-05 2.1E-09 73.4 8.8 89 194-310 105-202 (228)
188 1ksh_A ARF-like protein 2; sma 97.8 3.3E-05 1.1E-09 72.2 6.6 90 194-311 82-178 (186)
189 3auy_A DNA double-strand break 97.8 1.6E-05 5.6E-10 83.9 4.9 46 519-566 301-348 (371)
190 2f9l_A RAB11B, member RAS onco 97.8 3.2E-05 1.1E-09 73.6 6.5 57 367-423 5-65 (199)
191 2hjg_A GTP-binding protein ENG 97.7 2.5E-05 8.7E-10 84.3 6.4 75 192-267 252-331 (436)
192 1jal_A YCHF protein; nucleotid 97.7 1.3E-05 4.3E-10 84.5 3.8 56 368-424 3-78 (363)
193 1oix_A RAS-related protein RAB 97.7 3.5E-05 1.2E-09 73.1 6.2 58 366-423 28-89 (191)
194 1zd9_A ADP-ribosylation factor 97.7 4.8E-05 1.6E-09 71.6 7.1 89 194-310 87-182 (188)
195 1kao_A RAP2A; GTP-binding prot 97.7 4.6E-05 1.6E-09 69.1 6.6 55 368-423 4-62 (167)
196 3q72_A GTP-binding protein RAD 97.7 2.5E-05 8.7E-10 71.3 4.9 55 368-423 3-60 (166)
197 2qu8_A Putative nucleolar GTP- 97.7 3.2E-05 1.1E-09 75.4 5.8 58 365-423 27-87 (228)
198 1z0j_A RAB-22, RAS-related pro 97.7 4.2E-05 1.4E-09 69.9 6.2 57 367-423 6-66 (170)
199 1moz_A ARL1, ADP-ribosylation 97.7 3.9E-05 1.3E-09 71.3 6.0 89 194-310 82-177 (183)
200 2lkc_A Translation initiation 97.7 7.7E-05 2.6E-09 68.9 8.0 86 194-309 75-167 (178)
201 1lnz_A SPO0B-associated GTP-bi 97.7 1.2E-05 4.2E-10 84.1 2.7 93 187-311 226-328 (342)
202 2h17_A ADP-ribosylation factor 97.7 3.6E-05 1.2E-09 71.9 5.7 74 194-267 85-165 (181)
203 1c1y_A RAS-related protein RAP 97.7 5.1E-05 1.8E-09 69.1 6.7 88 194-309 71-163 (167)
204 2px0_A Flagellar biosynthesis 97.7 6.5E-05 2.2E-09 77.0 8.1 30 367-396 105-134 (296)
205 3t34_A Dynamin-related protein 97.7 0.0001 3.5E-09 77.4 9.7 24 368-391 35-58 (360)
206 3a00_A Guanylate kinase, GMP k 97.7 1.5E-05 5E-10 75.6 3.0 26 369-394 3-28 (186)
207 1wxq_A GTP-binding protein; st 97.7 2.1E-05 7E-10 84.1 4.4 36 368-404 1-36 (397)
208 2gj8_A MNME, tRNA modification 97.7 1E-05 3.5E-10 75.4 1.8 87 189-310 75-163 (172)
209 1ek0_A Protein (GTP-binding pr 97.7 4.4E-05 1.5E-09 69.6 5.9 56 368-423 4-63 (170)
210 2b6h_A ADP-ribosylation factor 97.7 5.9E-05 2E-09 71.5 6.9 88 194-309 93-187 (192)
211 1mky_A Probable GTP-binding pr 97.7 7.1E-05 2.4E-09 80.9 8.3 91 191-310 257-352 (439)
212 2f7s_A C25KG, RAS-related prot 97.7 9.2E-05 3.2E-09 71.1 8.3 87 193-310 103-196 (217)
213 1g16_A RAS-related protein SEC 97.7 2.8E-05 9.5E-10 71.1 4.4 88 193-310 71-162 (170)
214 3iby_A Ferrous iron transport 97.7 1.2E-05 4E-10 80.7 1.9 83 196-310 82-164 (256)
215 1z2a_A RAS-related protein RAB 97.7 6.9E-05 2.4E-09 68.2 6.9 58 366-423 4-65 (168)
216 2x77_A ADP-ribosylation factor 97.6 4.2E-05 1.4E-09 71.8 5.5 88 195-310 87-181 (189)
217 3gee_A MNME, tRNA modification 97.6 3.9E-05 1.3E-09 83.9 6.0 92 189-311 304-396 (476)
218 1u8z_A RAS-related protein RAL 97.6 6.7E-05 2.3E-09 68.1 6.7 56 367-423 4-63 (168)
219 1x3s_A RAS-related protein RAB 97.6 3.6E-05 1.2E-09 72.2 4.8 88 193-310 83-175 (195)
220 2il1_A RAB12; G-protein, GDP, 97.6 4.3E-05 1.5E-09 72.3 5.3 75 193-267 94-172 (192)
221 2www_A Methylmalonic aciduria 97.6 2E-05 7E-10 82.6 3.2 26 366-391 73-98 (349)
222 1wms_A RAB-9, RAB9, RAS-relate 97.6 5.6E-05 1.9E-09 69.7 5.9 57 366-422 6-66 (177)
223 2efe_B Small GTP-binding prote 97.6 5.8E-05 2E-09 69.9 5.9 89 193-311 80-173 (181)
224 3i8s_A Ferrous iron transport 97.6 8.7E-06 3E-10 82.4 0.2 87 194-312 82-168 (274)
225 4dsu_A GTPase KRAS, isoform 2B 97.6 7.2E-05 2.5E-09 69.7 6.5 55 367-423 4-63 (189)
226 3geh_A MNME, tRNA modification 97.6 3.1E-05 1.1E-09 84.3 4.5 88 189-311 295-382 (462)
227 1z0f_A RAB14, member RAS oncog 97.6 8.4E-05 2.9E-09 68.4 6.9 71 193-267 83-160 (179)
228 1kk1_A EIF2gamma; initiation o 97.6 0.00012 3.9E-09 78.5 8.8 96 189-312 98-199 (410)
229 1lvg_A Guanylate kinase, GMP k 97.6 2.1E-05 7.3E-10 75.5 2.8 25 368-392 5-29 (198)
230 1upt_A ARL1, ADP-ribosylation 97.6 5.1E-05 1.7E-09 69.5 5.3 56 366-423 6-62 (171)
231 1fzq_A ADP-ribosylation factor 97.6 4.3E-05 1.5E-09 71.6 4.8 56 366-423 15-71 (181)
232 3bc1_A RAS-related protein RAB 97.6 7.2E-05 2.5E-09 69.8 6.2 88 193-310 89-182 (195)
233 3gee_A MNME, tRNA modification 97.6 2.4E-05 8.1E-10 85.5 3.3 59 366-424 232-293 (476)
234 1g16_A RAS-related protein SEC 97.6 7.2E-05 2.5E-09 68.3 6.0 56 367-423 3-63 (170)
235 2zej_A Dardarin, leucine-rich 97.6 6E-05 2E-09 70.8 5.4 25 368-392 3-27 (184)
236 1z0f_A RAB14, member RAS oncog 97.6 9.4E-05 3.2E-09 68.1 6.6 58 366-423 14-75 (179)
237 1r2q_A RAS-related protein RAB 97.6 0.0001 3.5E-09 67.2 6.8 57 367-423 6-66 (170)
238 3tw8_B RAS-related protein RAB 97.6 7.7E-05 2.6E-09 68.8 6.0 57 366-423 8-69 (181)
239 2dby_A GTP-binding protein; GD 97.6 2.9E-05 9.9E-10 82.0 3.4 57 368-425 2-82 (368)
240 2g6b_A RAS-related protein RAB 97.6 0.0001 3.5E-09 68.1 6.8 59 365-423 8-71 (180)
241 1z0j_A RAB-22, RAS-related pro 97.6 6.9E-05 2.4E-09 68.4 5.6 89 193-310 74-166 (170)
242 2fg5_A RAB-22B, RAS-related pr 97.6 8.4E-05 2.9E-09 70.1 6.1 58 366-423 22-83 (192)
243 1c1y_A RAS-related protein RAP 97.6 9.7E-05 3.3E-09 67.2 6.4 56 367-423 3-62 (167)
244 2ce2_X GTPase HRAS; signaling 97.5 0.00011 3.7E-09 66.4 6.6 55 368-423 4-62 (166)
245 1xzp_A Probable tRNA modificat 97.5 1.7E-05 5.8E-10 86.8 1.3 57 367-423 243-302 (482)
246 2gf0_A GTP-binding protein DI- 97.5 8.2E-05 2.8E-09 70.1 5.9 89 194-311 76-169 (199)
247 3clv_A RAB5 protein, putative; 97.5 0.0001 3.5E-09 69.1 6.6 71 193-267 112-186 (208)
248 1s0u_A EIF-2-gamma, translatio 97.5 0.00016 5.4E-09 77.4 8.8 93 191-312 98-197 (408)
249 2g6b_A RAS-related protein RAB 97.5 0.0001 3.5E-09 68.1 6.4 72 194-267 80-156 (180)
250 2erx_A GTP-binding protein DI- 97.5 0.00014 4.9E-09 66.3 7.3 55 367-423 3-62 (172)
251 3r7w_A Gtpase1, GTP-binding pr 97.5 8.3E-05 2.8E-09 76.4 6.3 57 367-423 3-63 (307)
252 2lkc_A Translation initiation 97.5 6.7E-05 2.3E-09 69.2 5.0 58 365-423 6-66 (178)
253 3euj_A Chromosome partition pr 97.5 2.8E-05 9.4E-10 84.8 2.6 35 368-402 30-64 (483)
254 1vg8_A RAS-related protein RAB 97.5 6.6E-05 2.3E-09 71.3 5.0 88 194-310 77-172 (207)
255 1fzq_A ADP-ribosylation factor 97.5 0.00013 4.4E-09 68.3 6.9 90 193-310 79-175 (181)
256 1z08_A RAS-related protein RAB 97.5 0.00014 4.7E-09 66.5 6.9 57 366-423 5-66 (170)
257 1f6b_A SAR1; gtpases, N-termin 97.5 9.2E-05 3.2E-09 70.5 5.9 88 194-309 89-195 (198)
258 1ksh_A ARF-like protein 2; sma 97.5 8.5E-05 2.9E-09 69.4 5.5 56 366-423 17-73 (186)
259 1ky3_A GTP-binding protein YPT 97.5 8.6E-05 2.9E-09 68.6 5.5 58 366-423 7-69 (182)
260 4djt_A GTP-binding nuclear pro 97.5 0.00011 3.7E-09 70.7 6.4 72 195-267 82-157 (218)
261 3q85_A GTP-binding protein REM 97.5 0.00014 4.8E-09 66.4 6.8 57 367-423 2-62 (169)
262 2efe_B Small GTP-binding prote 97.5 0.00013 4.5E-09 67.5 6.6 58 366-423 11-72 (181)
263 2p5s_A RAS and EF-hand domain 97.5 0.00011 3.7E-09 69.8 6.2 58 366-423 27-88 (199)
264 2a9k_A RAS-related protein RAL 97.5 0.00013 4.6E-09 67.6 6.7 56 366-423 17-77 (187)
265 3geh_A MNME, tRNA modification 97.5 3.6E-05 1.2E-09 83.7 3.1 58 367-424 224-284 (462)
266 2bov_A RAla, RAS-related prote 97.5 0.00014 4.8E-09 68.8 6.9 57 366-423 13-73 (206)
267 3clv_A RAB5 protein, putative; 97.5 0.00012 4E-09 68.8 6.2 26 366-391 6-31 (208)
268 1kgd_A CASK, peripheral plasma 97.5 4.3E-05 1.5E-09 72.0 3.1 36 368-403 6-42 (180)
269 2c78_A Elongation factor TU-A; 97.5 0.00021 7.1E-09 76.3 8.8 78 189-267 90-176 (405)
270 1z06_A RAS-related protein RAB 97.5 0.00018 6E-09 67.5 7.4 57 366-422 19-79 (189)
271 1moz_A ARL1, ADP-ribosylation 97.5 6.6E-05 2.2E-09 69.8 4.3 57 365-423 16-73 (183)
272 2y8e_A RAB-protein 6, GH09086P 97.5 0.0001 3.6E-09 67.8 5.6 87 194-310 83-174 (179)
273 1zj6_A ADP-ribosylation factor 97.5 0.00013 4.3E-09 68.4 6.3 57 365-423 14-71 (187)
274 3cph_A RAS-related protein SEC 97.5 0.00015 5.2E-09 69.1 6.9 57 366-423 19-80 (213)
275 1m2o_B GTP-binding protein SAR 97.5 8.3E-05 2.8E-09 70.3 4.9 74 194-267 87-174 (190)
276 2y8e_A RAB-protein 6, GH09086P 97.5 0.00016 5.4E-09 66.6 6.7 56 367-423 14-74 (179)
277 3t5g_A GTP-binding protein RHE 97.5 0.00015 5E-09 67.3 6.5 57 366-423 5-65 (181)
278 3o47_A ADP-ribosylation factor 97.5 0.00013 4.3E-09 75.9 6.7 90 193-310 228-324 (329)
279 3a1s_A Iron(II) transport prot 97.5 5.5E-05 1.9E-09 75.9 3.8 84 196-311 82-165 (258)
280 1zbd_A Rabphilin-3A; G protein 97.5 0.00016 5.3E-09 68.6 6.8 58 366-423 7-68 (203)
281 3cph_A RAS-related protein SEC 97.5 8E-05 2.7E-09 71.1 4.8 74 193-267 88-164 (213)
282 2gf9_A RAS-related protein RAB 97.5 6.2E-05 2.1E-09 70.7 3.9 87 194-310 91-182 (189)
283 3tkl_A RAS-related protein RAB 97.5 0.00013 4.5E-09 68.5 6.2 74 193-267 84-161 (196)
284 2bme_A RAB4A, RAS-related prot 97.5 0.00012 4.1E-09 68.1 5.9 58 366-423 9-70 (186)
285 1jwy_B Dynamin A GTPase domain 97.5 9.6E-05 3.3E-09 75.6 5.7 26 367-392 24-49 (315)
286 2ged_A SR-beta, signal recogni 97.5 5.9E-05 2E-09 70.9 3.7 54 366-423 47-102 (193)
287 3llu_A RAS-related GTP-binding 97.5 0.00021 7.1E-09 67.7 7.6 74 194-267 92-180 (196)
288 2oil_A CATX-8, RAS-related pro 97.5 0.00013 4.6E-09 68.5 6.2 59 365-423 23-85 (193)
289 2fn4_A P23, RAS-related protei 97.5 0.00017 5.9E-09 66.4 6.8 56 366-423 8-68 (181)
290 1ek0_A Protein (GTP-binding pr 97.5 7.8E-05 2.7E-09 67.9 4.4 86 193-309 71-165 (170)
291 1vg8_A RAS-related protein RAB 97.4 0.00013 4.5E-09 69.2 6.0 57 366-423 7-68 (207)
292 2gf9_A RAS-related protein RAB 97.4 0.00016 5.6E-09 67.8 6.6 59 365-423 20-82 (189)
293 1r2q_A RAS-related protein RAB 97.4 8.6E-05 3E-09 67.6 4.5 86 193-310 74-166 (170)
294 3tkl_A RAS-related protein RAB 97.4 0.00014 4.8E-09 68.3 6.1 58 365-423 14-76 (196)
295 2h17_A ADP-ribosylation factor 97.4 0.00012 4E-09 68.4 5.5 57 365-423 19-76 (181)
296 1u8z_A RAS-related protein RAL 97.4 0.00014 4.6E-09 66.0 5.8 72 194-267 72-149 (168)
297 1wms_A RAB-9, RAB9, RAS-relate 97.4 0.00014 4.7E-09 67.0 5.9 74 193-267 75-156 (177)
298 3c8u_A Fructokinase; YP_612366 97.4 3.3E-05 1.1E-09 74.5 1.7 29 366-394 21-49 (208)
299 2ce2_X GTPase HRAS; signaling 97.4 9E-05 3.1E-09 67.0 4.5 73 194-267 71-147 (166)
300 3kkq_A RAS-related protein M-R 97.4 0.00019 6.7E-09 66.6 6.9 58 365-423 16-77 (183)
301 1r8s_A ADP-ribosylation factor 97.4 0.00012 4.2E-09 66.5 5.4 54 368-423 1-55 (164)
302 2bcg_Y Protein YP2, GTP-bindin 97.4 0.00017 5.9E-09 68.6 6.7 57 366-423 7-68 (206)
303 3con_A GTPase NRAS; structural 97.4 0.00018 6.1E-09 67.4 6.6 55 367-423 21-80 (190)
304 2a9k_A RAS-related protein RAL 97.4 0.00013 4.3E-09 67.7 5.5 72 194-267 86-163 (187)
305 3ihw_A Centg3; RAS, centaurin, 97.4 0.00013 4.5E-09 68.6 5.7 69 195-267 83-162 (184)
306 3bc1_A RAS-related protein RAB 97.4 0.00017 5.7E-09 67.3 6.4 26 366-391 10-35 (195)
307 2il1_A RAB12; G-protein, GDP, 97.4 0.00014 4.8E-09 68.7 5.9 58 365-422 24-85 (192)
308 1f6b_A SAR1; gtpases, N-termin 97.4 9.4E-05 3.2E-09 70.5 4.6 56 366-423 24-80 (198)
309 1jwy_B Dynamin A GTPase domain 97.4 0.00023 7.8E-09 72.8 7.9 80 185-267 155-238 (315)
310 3c5h_A Glucocorticoid receptor 97.4 0.00016 5.3E-09 72.2 6.4 68 197-267 162-237 (255)
311 1m2o_B GTP-binding protein SAR 97.4 0.00013 4.5E-09 68.9 5.6 56 366-423 22-78 (190)
312 3tr0_A Guanylate kinase, GMP k 97.4 5.2E-05 1.8E-09 72.3 2.8 25 368-392 8-32 (205)
313 2e87_A Hypothetical protein PH 97.4 0.0004 1.4E-08 72.8 9.7 86 196-311 245-334 (357)
314 1z06_A RAS-related protein RAB 97.4 0.00014 4.9E-09 68.2 5.7 73 194-267 90-167 (189)
315 1kao_A RAP2A; GTP-binding prot 97.4 0.00017 5.7E-09 65.4 5.9 86 194-309 71-162 (167)
316 2dy1_A Elongation factor G; tr 97.4 0.00033 1.1E-08 79.6 9.7 113 365-567 7-139 (665)
317 2a5j_A RAS-related protein RAB 97.4 0.00024 8.3E-09 66.8 7.2 72 194-267 90-166 (191)
318 2gf0_A GTP-binding protein DI- 97.4 0.00022 7.4E-09 67.1 6.8 57 366-423 7-67 (199)
319 3qq5_A Small GTP-binding prote 97.4 4.2E-05 1.4E-09 82.3 2.0 89 190-311 106-194 (423)
320 1x3s_A RAS-related protein RAB 97.4 0.00018 6.1E-09 67.4 6.2 57 367-423 15-75 (195)
321 2fh5_B SR-beta, signal recogni 97.4 0.00012 4E-09 70.2 5.0 58 195-252 76-140 (214)
322 2a5j_A RAS-related protein RAB 97.4 0.00019 6.4E-09 67.5 6.3 59 365-423 19-81 (191)
323 2o52_A RAS-related protein RAB 97.4 0.00018 6.1E-09 68.5 6.2 58 365-423 23-85 (200)
324 2ew1_A RAS-related protein RAB 97.4 0.00017 5.7E-09 69.1 6.0 57 366-422 25-85 (201)
325 2aka_B Dynamin-1; fusion prote 97.4 5.4E-05 1.9E-09 76.7 2.5 27 366-392 25-51 (299)
326 4dsu_A GTPase KRAS, isoform 2B 97.4 0.00014 4.7E-09 67.7 5.1 88 194-310 72-163 (189)
327 2j69_A Bacterial dynamin-like 97.4 0.0002 6.7E-09 81.9 7.4 36 366-401 68-103 (695)
328 3j2k_7 ERF3, eukaryotic polype 97.4 0.00054 1.8E-08 74.0 10.5 79 189-268 110-208 (439)
329 1ky3_A GTP-binding protein YPT 97.4 0.00024 8.1E-09 65.5 6.7 73 194-267 78-160 (182)
330 3lnc_A Guanylate kinase, GMP k 97.4 7.1E-05 2.4E-09 73.3 3.3 26 368-393 28-54 (231)
331 2qpt_A EH domain-containing pr 97.4 0.00016 5.5E-09 80.4 6.4 38 365-402 63-102 (550)
332 3p32_A Probable GTPase RV1496/ 97.4 0.00024 8.1E-09 74.6 7.4 86 193-311 188-282 (355)
333 2erx_A GTP-binding protein DI- 97.4 0.0001 3.5E-09 67.3 4.1 89 194-311 71-165 (172)
334 3tr5_A RF-3, peptide chain rel 97.4 0.00052 1.8E-08 75.9 10.4 51 191-242 99-149 (528)
335 2x77_A ADP-ribosylation factor 97.4 0.00012 4.2E-09 68.5 4.6 57 365-423 20-77 (189)
336 4gzl_A RAS-related C3 botulinu 97.4 6.5E-05 2.2E-09 71.9 2.7 87 194-309 98-201 (204)
337 3bwd_D RAC-like GTP-binding pr 97.4 0.0001 3.5E-09 68.3 3.9 50 194-243 76-128 (182)
338 2fh5_B SR-beta, signal recogni 97.4 0.00023 7.9E-09 68.1 6.5 56 366-423 6-65 (214)
339 2h57_A ADP-ribosylation factor 97.4 0.00011 3.7E-09 69.1 4.1 57 365-423 19-78 (190)
340 1z2a_A RAS-related protein RAB 97.4 0.00015 5E-09 66.0 4.9 73 193-267 73-149 (168)
341 2hxs_A RAB-26, RAS-related pro 97.4 0.00025 8.7E-09 65.3 6.6 87 194-310 76-170 (178)
342 2fu5_C RAS-related protein RAB 97.3 0.00026 9E-09 65.7 6.7 85 194-310 77-168 (183)
343 2yc2_C IFT27, small RAB-relate 97.3 0.00012 4E-09 69.4 4.3 70 194-267 93-173 (208)
344 1mh1_A RAC1; GTP-binding, GTPa 97.3 0.00013 4.3E-09 67.8 4.4 89 194-311 73-178 (186)
345 2fn4_A P23, RAS-related protei 97.3 0.00016 5.4E-09 66.7 5.0 87 194-309 77-168 (181)
346 3gj0_A GTP-binding nuclear pro 97.3 0.0001 3.4E-09 71.2 3.8 59 365-423 13-75 (221)
347 3b1v_A Ferrous iron uptake tra 97.3 5.4E-05 1.9E-09 76.6 1.9 87 187-310 71-161 (272)
348 2ius_A DNA translocase FTSK; n 97.3 0.00039 1.3E-08 76.3 8.8 45 520-565 294-343 (512)
349 2hxs_A RAB-26, RAS-related pro 97.3 0.00018 6.3E-09 66.3 5.4 58 366-423 5-67 (178)
350 2qtf_A Protein HFLX, GTP-bindi 97.3 0.00025 8.7E-09 74.7 7.1 97 186-310 246-351 (364)
351 3llu_A RAS-related GTP-binding 97.3 0.00032 1.1E-08 66.4 7.1 59 365-423 18-80 (196)
352 2oil_A CATX-8, RAS-related pro 97.3 0.00022 7.7E-09 67.0 6.0 72 194-267 94-170 (193)
353 3reg_A RHO-like small GTPase; 97.3 9.9E-05 3.4E-09 69.6 3.5 87 194-310 91-185 (194)
354 3tw8_B RAS-related protein RAB 97.3 8.2E-05 2.8E-09 68.6 2.8 85 194-310 78-168 (181)
355 2o52_A RAS-related protein RAB 97.3 0.0002 6.8E-09 68.1 5.5 71 193-267 93-170 (200)
356 4djt_A GTP-binding nuclear pro 97.3 0.00013 4.4E-09 70.2 4.2 59 366-424 10-73 (218)
357 2atv_A RERG, RAS-like estrogen 97.3 0.00032 1.1E-08 66.3 6.9 58 366-424 27-88 (196)
358 2gco_A H9, RHO-related GTP-bin 97.3 0.00032 1.1E-08 66.7 6.8 58 365-423 23-84 (201)
359 4bas_A ADP-ribosylation factor 97.3 0.00021 7.2E-09 67.2 5.5 57 365-423 15-74 (199)
360 2iwr_A Centaurin gamma 1; ANK 97.3 0.00055 1.9E-08 63.1 8.2 67 195-267 70-151 (178)
361 1fnn_A CDC6P, cell division co 97.3 0.00068 2.3E-08 70.8 9.8 45 522-568 125-173 (389)
362 1zun_B Sulfate adenylate trans 97.3 0.00024 8.2E-09 76.6 6.4 77 192-269 122-208 (434)
363 2bov_A RAla, RAS-related prote 97.3 0.00035 1.2E-08 66.0 6.9 87 194-310 82-174 (206)
364 2fg5_A RAB-22B, RAS-related pr 97.3 0.00019 6.7E-09 67.6 5.0 86 194-311 92-184 (192)
365 1nrj_B SR-beta, signal recogni 97.3 0.0002 6.7E-09 68.8 5.1 55 365-423 10-66 (218)
366 3cpj_B GTP-binding protein YPT 97.3 0.0003 1E-08 68.1 6.3 58 366-423 12-73 (223)
367 2p5s_A RAS and EF-hand domain 97.3 0.00017 5.8E-09 68.4 4.5 74 193-267 96-179 (199)
368 2fv8_A H6, RHO-related GTP-bin 97.3 0.00028 9.6E-09 67.4 6.0 56 367-423 25-84 (207)
369 2j1l_A RHO-related GTP-binding 97.3 0.00032 1.1E-08 67.5 6.5 57 366-423 33-93 (214)
370 2bcg_Y Protein YP2, GTP-bindin 97.3 0.0003 1E-08 66.9 6.2 85 194-310 77-168 (206)
371 1zp6_A Hypothetical protein AT 97.3 0.00015 5.1E-09 68.3 4.0 23 368-390 10-32 (191)
372 3dz8_A RAS-related protein RAB 97.3 0.00024 8.2E-09 66.8 5.4 89 193-310 91-183 (191)
373 2hup_A RAS-related protein RAB 97.3 0.00034 1.2E-08 66.6 6.5 73 193-267 97-175 (201)
374 3oes_A GTPase rhebl1; small GT 97.3 0.00025 8.5E-09 67.3 5.5 57 366-423 23-83 (201)
375 2qag_A Septin-2, protein NEDD5 97.3 0.00015 5.2E-09 76.3 4.3 57 367-423 37-106 (361)
376 2j0v_A RAC-like GTP-binding pr 97.3 0.00013 4.6E-09 69.7 3.6 89 194-310 77-177 (212)
377 2b6h_A ADP-ribosylation factor 97.3 0.00024 8.2E-09 67.2 5.3 57 365-423 27-84 (192)
378 3q85_A GTP-binding protein REM 97.3 0.00028 9.7E-09 64.4 5.6 72 195-267 73-149 (169)
379 1zd9_A ADP-ribosylation factor 97.3 0.00026 8.7E-09 66.5 5.4 57 365-423 20-78 (188)
380 2j1l_A RHO-related GTP-binding 97.2 0.00022 7.4E-09 68.7 5.0 50 194-243 102-154 (214)
381 3q72_A GTP-binding protein RAD 97.2 0.00026 9E-09 64.4 5.3 86 195-309 70-160 (166)
382 3q3j_B RHO-related GTP-binding 97.2 0.00035 1.2E-08 67.3 6.4 48 194-241 95-145 (214)
383 1mh1_A RAC1; GTP-binding, GTPa 97.2 0.00041 1.4E-08 64.2 6.6 25 367-391 5-29 (186)
384 1sq5_A Pantothenate kinase; P- 97.2 0.0001 3.5E-09 75.8 2.7 32 366-397 79-112 (308)
385 2atx_A Small GTP binding prote 97.2 0.00019 6.5E-09 67.5 4.3 49 194-242 86-137 (194)
386 1yrb_A ATP(GTP)binding protein 97.2 0.00032 1.1E-08 69.5 6.1 55 187-244 128-188 (262)
387 3tau_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 69.6 3.9 26 368-393 9-34 (208)
388 3t5g_A GTP-binding protein RHE 97.2 0.00031 1.1E-08 65.0 5.6 85 195-309 75-165 (181)
389 1qhl_A Protein (cell division 97.2 2E-05 7E-10 77.6 -2.8 33 370-402 30-62 (227)
390 2hup_A RAS-related protein RAB 97.2 0.00042 1.4E-08 66.0 6.5 58 365-422 27-88 (201)
391 3dz8_A RAS-related protein RAB 97.2 0.00017 5.8E-09 67.9 3.7 57 366-422 22-82 (191)
392 2gco_A H9, RHO-related GTP-bin 97.2 0.00025 8.4E-09 67.5 4.8 50 194-243 93-145 (201)
393 2cxx_A Probable GTP-binding pr 97.2 0.00074 2.5E-08 62.8 8.0 87 195-310 80-181 (190)
394 2q3h_A RAS homolog gene family 97.2 0.00047 1.6E-08 65.2 6.7 56 366-423 19-79 (201)
395 2ywe_A GTP-binding protein LEP 97.2 0.00052 1.8E-08 76.9 8.0 94 190-313 89-184 (600)
396 2wji_A Ferrous iron transport 97.2 0.00011 3.6E-09 67.7 2.0 78 196-309 80-161 (165)
397 2q3h_A RAS homolog gene family 97.2 0.00016 5.4E-09 68.5 3.3 48 194-241 88-138 (201)
398 3lvq_E ARF-GAP with SH3 domain 97.2 0.00025 8.7E-09 77.6 5.4 91 193-311 385-482 (497)
399 1vma_A Cell division protein F 97.2 0.0008 2.8E-08 69.1 8.8 28 367-394 104-131 (306)
400 3gj0_A GTP-binding nuclear pro 97.2 0.00013 4.6E-09 70.4 2.8 72 194-267 84-157 (221)
401 3con_A GTPase NRAS; structural 97.2 0.00024 8.3E-09 66.5 4.5 70 194-267 89-165 (190)
402 2iwr_A Centaurin gamma 1; ANK 97.2 0.00037 1.3E-08 64.3 5.7 57 366-423 6-65 (178)
403 1zbd_A Rabphilin-3A; G protein 97.2 0.0004 1.4E-08 65.8 6.1 71 193-267 76-153 (203)
404 1d2e_A Elongation factor TU (E 97.2 0.00091 3.1E-08 71.2 9.5 78 189-267 81-167 (397)
405 2gza_A Type IV secretion syste 97.2 0.00015 5E-09 76.4 3.3 29 369-397 177-205 (361)
406 3kkq_A RAS-related protein M-R 97.2 0.00057 1.9E-08 63.4 7.0 73 194-267 86-163 (183)
407 2x2e_A Dynamin-1; nitration, h 97.2 0.00028 9.5E-09 73.9 5.4 26 367-392 31-56 (353)
408 1m7b_A RND3/RHOE small GTP-bin 97.2 0.0004 1.4E-08 64.8 5.9 57 366-423 6-66 (184)
409 2j41_A Guanylate kinase; GMP, 97.2 0.00021 7.2E-09 68.0 4.0 27 368-394 7-33 (207)
410 3p26_A Elongation factor 1 alp 97.2 0.00038 1.3E-08 76.1 6.4 82 188-269 125-222 (483)
411 3ney_A 55 kDa erythrocyte memb 97.2 0.00017 5.9E-09 69.3 3.3 36 368-403 20-56 (197)
412 2bme_A RAB4A, RAS-related prot 97.2 0.0003 1E-08 65.4 4.8 72 194-267 79-155 (186)
413 3t5d_A Septin-7; GTP-binding p 97.2 0.00019 6.4E-09 72.4 3.6 68 196-267 114-186 (274)
414 2p67_A LAO/AO transport system 97.1 0.00012 4.2E-09 76.4 2.2 26 366-391 55-80 (341)
415 2f7s_A C25KG, RAS-related prot 97.1 0.00034 1.2E-08 67.1 5.1 27 366-392 24-50 (217)
416 4gzl_A RAS-related C3 botulinu 97.1 0.00049 1.7E-08 65.6 6.1 27 365-391 28-54 (204)
417 2v9p_A Replication protein E1; 97.1 0.00011 3.9E-09 75.4 1.7 24 368-391 127-150 (305)
418 2yc2_C IFT27, small RAB-relate 97.1 0.0002 6.9E-09 67.7 3.3 58 366-423 19-84 (208)
419 3reg_A RHO-like small GTPase; 97.1 0.00051 1.7E-08 64.6 6.0 27 366-392 22-48 (194)
420 2fv8_A H6, RHO-related GTP-bin 97.1 0.00039 1.3E-08 66.4 5.3 50 194-243 93-145 (207)
421 3k53_A Ferrous iron transport 97.1 0.00013 4.5E-09 73.3 2.0 85 195-311 79-164 (271)
422 1z08_A RAS-related protein RAB 97.1 0.00039 1.3E-08 63.4 5.1 83 195-309 76-165 (170)
423 2cjw_A GTP-binding protein GEM 97.1 0.00047 1.6E-08 65.2 5.8 26 366-391 5-30 (192)
424 2nzj_A GTP-binding protein REM 97.1 0.0005 1.7E-08 63.0 5.8 86 194-309 74-165 (175)
425 2wjg_A FEOB, ferrous iron tran 97.1 0.00021 7E-09 66.7 3.0 82 196-313 84-169 (188)
426 2atv_A RERG, RAS-like estrogen 97.1 0.00039 1.3E-08 65.6 4.8 72 194-267 95-172 (196)
427 3cbq_A GTP-binding protein REM 97.1 0.00042 1.4E-08 65.7 5.1 58 365-423 21-83 (195)
428 3kl4_A SRP54, signal recogniti 97.1 0.0014 4.8E-08 70.5 9.7 28 366-393 96-123 (433)
429 2yhs_A FTSY, cell division pro 97.1 0.00014 4.7E-09 79.3 1.7 32 367-398 293-324 (503)
430 3t1o_A Gliding protein MGLA; G 97.1 0.00023 7.8E-09 66.6 3.0 28 366-393 13-40 (198)
431 3oes_A GTPase rhebl1; small GT 97.1 0.00029 1E-08 66.9 3.8 87 194-310 92-184 (201)
432 2ew1_A RAS-related protein RAB 97.1 0.00043 1.5E-08 66.2 5.0 73 193-267 94-171 (201)
433 2j0v_A RAC-like GTP-binding pr 97.1 0.00082 2.8E-08 64.1 7.0 57 366-423 8-68 (212)
434 2fu5_C RAS-related protein RAB 97.1 0.00022 7.7E-09 66.2 2.9 57 366-423 7-68 (183)
435 3avx_A Elongation factor TS, e 97.1 0.0017 5.8E-08 77.1 10.8 106 186-312 371-485 (1289)
436 2elf_A Protein translation elo 97.1 0.001 3.5E-08 70.2 8.2 96 188-311 74-178 (370)
437 3th5_A RAS-related C3 botulinu 96.1 9.2E-05 3.2E-09 70.5 0.0 49 194-242 98-149 (204)
438 3c5c_A RAS-like protein 12; GD 97.0 0.00083 2.8E-08 63.0 6.7 58 366-424 20-81 (187)
439 2atx_A Small GTP binding prote 97.0 0.00085 2.9E-08 62.9 6.7 57 366-423 17-77 (194)
440 3cpj_B GTP-binding protein YPT 97.0 0.00042 1.4E-08 67.1 4.4 87 194-312 82-175 (223)
441 3ihw_A Centg3; RAS, centaurin, 97.0 0.00078 2.7E-08 63.2 6.1 27 365-391 18-44 (184)
442 3zvr_A Dynamin-1; hydrolase, D 97.0 0.00022 7.7E-09 81.6 2.7 70 196-268 186-261 (772)
443 1g7s_A Translation initiation 97.0 0.00076 2.6E-08 75.5 6.9 47 194-241 90-136 (594)
444 1lnz_A SPO0B-associated GTP-bi 97.0 0.00019 6.4E-09 75.1 1.8 55 369-424 160-218 (342)
445 2f1r_A Molybdopterin-guanine d 97.0 7.3E-05 2.5E-09 70.3 -1.2 26 369-394 4-29 (171)
446 4e22_A Cytidylate kinase; P-lo 97.0 0.00022 7.4E-09 71.1 2.2 32 368-399 28-62 (252)
447 2g3y_A GTP-binding protein GEM 97.0 0.0012 4.2E-08 63.9 7.3 26 366-391 36-61 (211)
448 1gwn_A RHO-related GTP-binding 97.0 0.00083 2.8E-08 64.4 5.9 57 366-423 27-87 (205)
449 1ls1_A Signal recognition part 96.9 0.003 1E-07 64.4 10.4 29 366-394 97-125 (295)
450 1udx_A The GTP-binding protein 96.9 0.00076 2.6E-08 72.3 6.1 91 190-310 228-322 (416)
451 2bdt_A BH3686; alpha-beta prot 96.9 0.0003 1E-08 66.3 2.6 21 369-389 4-24 (189)
452 3kta_A Chromosome segregation 96.9 0.00028 9.7E-09 66.0 2.4 27 369-395 28-54 (182)
453 2dr3_A UPF0273 protein PH0284; 96.9 0.0014 4.7E-08 63.9 7.5 44 522-566 128-175 (247)
454 3l0i_B RAS-related protein RAB 96.9 0.00016 5.6E-09 68.5 0.7 58 365-423 31-93 (199)
455 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00039 1.3E-08 64.9 3.3 48 194-241 75-125 (184)
456 3c5c_A RAS-like protein 12; GD 96.9 0.0011 3.6E-08 62.3 6.1 72 194-267 88-168 (187)
457 1p9r_A General secretion pathw 96.9 0.00025 8.6E-09 76.1 1.9 30 369-398 169-198 (418)
458 3cbq_A GTP-binding protein REM 96.9 0.0016 5.3E-08 61.7 7.3 71 195-267 94-170 (195)
459 2wsm_A Hydrogenase expression/ 96.9 0.00064 2.2E-08 65.4 4.6 81 197-310 129-211 (221)
460 3qq5_A Small GTP-binding prote 96.9 0.00019 6.6E-09 77.1 1.0 61 365-425 32-96 (423)
461 3bwd_D RAC-like GTP-binding pr 96.9 0.00058 2E-08 63.0 4.1 26 366-391 7-32 (182)
462 1nij_A Hypothetical protein YJ 96.9 0.00044 1.5E-08 71.3 3.4 24 368-391 5-28 (318)
463 1gwn_A RHO-related GTP-binding 96.9 0.00046 1.6E-08 66.2 3.2 48 194-241 96-146 (205)
464 2oap_1 GSPE-2, type II secreti 96.9 0.00037 1.3E-08 76.7 2.8 29 369-397 262-290 (511)
465 4eun_A Thermoresistant glucoki 96.8 0.00045 1.6E-08 65.9 3.0 24 368-391 30-53 (200)
466 1kag_A SKI, shikimate kinase I 96.8 0.00039 1.3E-08 64.3 2.3 24 369-392 6-29 (173)
467 2www_A Methylmalonic aciduria 96.8 0.0016 5.4E-08 68.1 7.2 69 194-267 184-261 (349)
468 2zr9_A Protein RECA, recombina 96.8 0.0014 4.8E-08 68.6 6.2 22 369-390 63-84 (349)
469 3q3j_B RHO-related GTP-binding 96.8 0.0014 4.9E-08 63.0 5.9 57 366-423 26-86 (214)
470 2j69_A Bacterial dynamin-like 96.7 0.0017 5.9E-08 74.1 7.3 54 189-243 192-246 (695)
471 3l0i_B RAS-related protein RAB 96.7 0.00012 4.3E-09 69.4 -1.9 85 194-309 102-192 (199)
472 3izq_1 HBS1P, elongation facto 96.7 0.00085 2.9E-08 75.5 4.5 82 187-269 258-356 (611)
473 2wkq_A NPH1-1, RAS-related C3 96.7 0.00051 1.8E-08 70.2 2.5 49 194-242 223-274 (332)
474 1rz3_A Hypothetical protein rb 96.7 0.00043 1.5E-08 66.3 1.7 28 366-393 21-48 (201)
475 3r7w_A Gtpase1, GTP-binding pr 96.7 0.0032 1.1E-07 64.5 8.3 74 194-267 77-164 (307)
476 1pui_A ENGB, probable GTP-bind 96.7 0.0057 1.9E-07 58.0 9.5 88 195-311 106-197 (210)
477 2xex_A Elongation factor G; GT 96.7 0.0029 1E-07 72.2 8.6 61 191-252 92-155 (693)
478 1dar_A EF-G, elongation factor 96.7 0.0038 1.3E-07 71.2 9.6 53 190-243 93-145 (691)
479 3mca_A HBS1, elongation factor 96.7 0.00045 1.5E-08 77.5 1.7 76 193-269 274-367 (592)
480 2xtp_A GTPase IMAP family memb 96.6 0.00065 2.2E-08 67.5 2.5 54 188-242 96-154 (260)
481 1cke_A CK, MSSA, protein (cyti 96.6 0.00035 1.2E-08 67.7 0.4 24 368-391 6-29 (227)
482 2p67_A LAO/AO transport system 96.6 0.0042 1.4E-07 64.6 8.7 69 194-267 166-243 (341)
483 3lxx_A GTPase IMAP family memb 96.6 0.0033 1.1E-07 61.5 7.5 56 190-246 105-164 (239)
484 3dpu_A RAB family protein; roc 96.6 0.0012 4E-08 73.1 4.5 69 195-267 119-190 (535)
485 3tqc_A Pantothenate kinase; bi 96.6 0.00093 3.2E-08 69.1 3.5 28 365-392 90-117 (321)
486 3izq_1 HBS1P, elongation facto 96.6 0.0013 4.4E-08 74.0 4.9 27 365-391 165-191 (611)
487 3lxw_A GTPase IMAP family memb 96.6 0.0024 8.2E-08 63.2 6.3 100 188-312 96-207 (247)
488 3uie_A Adenylyl-sulfate kinase 96.6 0.001 3.4E-08 63.5 3.4 26 367-392 25-50 (200)
489 3q5d_A Atlastin-1; G protein, 96.6 0.0016 5.6E-08 70.2 5.4 25 366-390 66-90 (447)
490 3lvq_E ARF-GAP with SH3 domain 96.6 0.0015 5.1E-08 71.4 5.2 57 365-423 320-377 (497)
491 2zej_A Dardarin, leucine-rich 96.6 0.002 6.9E-08 60.1 5.3 71 195-267 77-159 (184)
492 1knq_A Gluconate kinase; ALFA/ 96.6 0.0011 3.8E-08 61.5 3.5 24 368-391 9-32 (175)
493 1jjv_A Dephospho-COA kinase; P 96.6 0.0011 3.9E-08 63.2 3.6 23 368-390 3-25 (206)
494 3izy_P Translation initiation 96.6 0.00025 8.6E-09 78.4 -1.3 88 194-310 72-165 (537)
495 2ce7_A Cell division protein F 96.5 0.0016 5.4E-08 71.0 4.9 22 369-390 51-72 (476)
496 2h5e_A Peptide chain release f 96.5 0.0054 1.8E-07 67.7 9.0 53 190-243 98-150 (529)
497 2aka_B Dynamin-1; fusion prote 96.5 0.00073 2.5E-08 68.3 1.9 51 192-243 156-208 (299)
498 2vp4_A Deoxynucleoside kinase; 96.5 0.00092 3.1E-08 65.4 2.5 24 367-390 20-43 (230)
499 3o47_A ADP-ribosylation factor 96.5 0.0015 5.2E-08 67.6 4.3 56 365-422 163-219 (329)
500 3j2k_7 ERF3, eukaryotic polype 96.5 0.0023 8E-08 69.0 5.8 26 365-390 15-40 (439)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-32 Score=281.55 Aligned_cols=265 Identities=20% Similarity=0.317 Sum_probs=182.7
Q ss_pred CCcch-hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC
Q psy3589 178 LSYFE-LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF 256 (604)
Q Consensus 178 lt~fE-~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~ 256 (604)
+.||. |...+|||++++++++|+||+|+|||+|..++++.+.+|+. ++|.|+|+||+||+++....+|.+||+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~---~kp~ilVlNK~DL~~~~~~~~~~~~~~~~- 78 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK---NKPRIMLLNKADKADAAVTQQWKEHFENQ- 78 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS---SSCEEEEEECGGGSCHHHHHHHHHHHHTT-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHC---CCCEEEEEECcccCCHHHHHHHHHHHHhc-
Confidence 67898 56699999999999999999999999999999999999984 79999999999999988889999999764
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchh
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVE 336 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~ 336 (604)
+++++++||. ++.|+.+|++.+.+++... ..+.
T Consensus 79 -g~~~i~iSA~----------------------------~~~gi~~L~~~i~~~l~~~---------~~~~--------- 111 (282)
T 1puj_A 79 -GIRSLSINSV----------------------------NGQGLNQIVPASKEILQEK---------FDRM--------- 111 (282)
T ss_dssp -TCCEEECCTT----------------------------TCTTGGGHHHHHHHHHHHH---------HHHH---------
T ss_pred -CCcEEEEECC----------------------------CcccHHHHHHHHHHHHHHH---------HHHH---------
Confidence 3578888886 3456666776665543210 0000
Q ss_pred hhhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEE
Q psy3589 337 EEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRL 416 (604)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l 416 (604)
.........++++++|.||||||||+|.|.|.....+|.+||+|++.+.+.+...+.+
T Consensus 112 ----------------------~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l 169 (282)
T 1puj_A 112 ----------------------RAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELEL 169 (282)
T ss_dssp ----------------------HHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEE
T ss_pred ----------------------HhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEE
Confidence 0001123558999999999999999999999998889999999999888888888999
Q ss_pred ecCCCccCCCCCChhh---hHhhcccccccccCchHHHHHHHH----hcC--HHHHhhcCCCCCcccccHHHHHHHHHHh
Q psy3589 417 CDCPGLVFPSKVPKPL---QVLMGSFPIAQLREPYSTVQYLAE----RMD--LIKLLHIKHPDDDEYWCAMDICDGWAQK 487 (604)
Q Consensus 417 ~D~pGl~~p~~~~~~~---~~l~g~~~i~~l~~~~~~i~~l~~----~~~--l~~ll~~~~p~~~~~~~~~ell~~~a~~ 487 (604)
+||||+..+....... ..+.+..... ..+....+.++.. ..+ +...+.+..+. .++.++++.++++
T Consensus 170 ~DtpG~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~y~~~~~~----~~~~~~l~~~a~~ 244 (282)
T 1puj_A 170 LDTPGILWPKFEDELVGLRLAVTGAIKDS-IINLQDVAVFGLRFLEEHYPERLKERYGLDEIP----EDIAELFDAIGEK 244 (282)
T ss_dssp EECCCCCCSCCCCHHHHHHHHHHTSSCTT-SSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCC----SSHHHHHHHHHHH
T ss_pred EECcCcCCCCCCCHHHHHHHHHhCCcchh-hCCHHHHHHHHHHHHHHhChHHHHHHcCCCCCC----CCHHHHHHHHHHH
Confidence 9999999887654432 2344443322 2233333333332 221 12223332111 2578999999999
Q ss_pred cchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 488 RSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 488 rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
+|++. +||++|..++|+.+|++|..|+|..+..
T Consensus 245 ~g~~~-kgg~~d~~~aa~~~l~d~~~Gklg~~~l 277 (282)
T 1puj_A 245 RGCLM-SGGLINYDKTTEVIIRDIRTEKFGRLSF 277 (282)
T ss_dssp HTCBC-STTCBCHHHHHHHHHHHHHTTTTCSCCS
T ss_pred hCCcc-cCCcccHHHHHHHHHHHHHcCCCCceEC
Confidence 99985 7999999999999999999999875443
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.96 E-value=1.7e-30 Score=264.10 Aligned_cols=241 Identities=21% Similarity=0.304 Sum_probs=166.1
Q ss_pred Ccch-hhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCC
Q psy3589 179 SYFE-LNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFP 257 (604)
Q Consensus 179 t~fE-~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p 257 (604)
+||. |...+|||++++++++|+||+|+|||+|..++++.+. ++ ++|.|+|+||+||+++....+|.+||++.
T Consensus 2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-- 74 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS----RKETIILLNKVDIADEKTTKKWVEFFKKQ-- 74 (262)
T ss_dssp -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT----TSEEEEEEECGGGSCHHHHHHHHHHHHHT--
T ss_pred CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc----CCCcEEEEECccCCCHHHHHHHHHHHHHc--
Confidence 6888 5558999999999999999999999999999998887 65 79999999999999998889999999775
Q ss_pred CceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhh
Q psy3589 258 KLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEE 337 (604)
Q Consensus 258 ~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~ 337 (604)
++++ ++||. ++.|+.+|++.+..
T Consensus 75 g~~v-~iSa~----------------------------~~~gi~~L~~~l~~---------------------------- 97 (262)
T 3cnl_A 75 GKRV-ITTHK----------------------------GEPRKVLLKKLSFD---------------------------- 97 (262)
T ss_dssp TCCE-EECCT----------------------------TSCHHHHHHHHCCC----------------------------
T ss_pred CCeE-EEECC----------------------------CCcCHHHHHHHHHH----------------------------
Confidence 3456 88876 44566666543311
Q ss_pred hhhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEe
Q psy3589 338 EDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLC 417 (604)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~ 417 (604)
...+++++|.||||||||+|.|+|.....+|.++|+|+..+.+.+...+.++
T Consensus 98 ----------------------------~~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~ 149 (262)
T 3cnl_A 98 ----------------------------RLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKIL 149 (262)
T ss_dssp ----------------------------TTCEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEE
T ss_pred ----------------------------hhhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEE
Confidence 0058999999999999999999999888889999999998888888889999
Q ss_pred cCCCccCCCC-CChhhhHhhcccccccccCchHHHHHHHHhcC--HHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhc
Q psy3589 418 DCPGLVFPSK-VPKPLQVLMGSFPIAQLREPYSTVQYLAERMD--LIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAK 494 (604)
Q Consensus 418 D~pGl~~p~~-~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~--l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~s 494 (604)
||||+..+.. ...... ....+....+.. ..+.++....+ +...+.+ +.. . .++++.+++++|++. +
T Consensus 150 DtpG~~~~~~~~~~~~~-~~~~~d~~~~~~--~~~~~l~~~~~~~l~~~y~i--~~~----d-~~~l~~ia~~~g~~~-k 218 (262)
T 3cnl_A 150 DTPGILYKNIFSEDLAA-KLLLVGSLPVER--IEDQRIFERAFEIFARSIGI--ESS----F-SEFFEDFARKRGLLK-K 218 (262)
T ss_dssp SSCEECCCCCCSHHHHH-HHHHTTSSCGGG--CCCHHHHHHHHHHHHHHHTC--CCC----H-HHHHHHHHHHTTCBC-G
T ss_pred ECCCcccCcCCCChhhc-ccccCCHHHHHH--HHHHHHHHhCHHHHHHHcCc--CCC----c-HHHHHHHHHHhCCcc-C
Confidence 9999998876 332221 111111111110 01111221111 1222222 211 2 689999999999985 7
Q ss_pred cCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 495 TGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 495 GG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
||.+|..++|+.++++|..|+|..+..+
T Consensus 219 gg~~d~~~aa~~~l~d~~~g~l~~~~l~ 246 (262)
T 3cnl_A 219 GGVPDIERALMLFFTEVAQGKAGRVSFE 246 (262)
T ss_dssp GGCBCHHHHHHHHHHHHHTTTTCSCCSC
T ss_pred CCcccHHHHHHHHHHHHHcCCCCceECC
Confidence 8999999999999999999998755443
No 3
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.84 E-value=8.8e-22 Score=200.34 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ec-CCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LT-DNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~-~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.... .. ...++.+.+.+.++. .....+..+.... .
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~~~~~-~ 114 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF--SVSEVIQMGRAPY-G 114 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC--BHHHHHHGGGTTS-C
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC--CHHHHHHhhhhhc-C
Confidence 369999999999999999999999999888755443321100 00 012333434333322 1222222221111 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.......+..++..+++..+. .+...++|||+.|+..+|++++..|. .-.+|
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~LSgGq~QRv~iAraL~~~~~------~~~~p 166 (266)
T 4g1u_C 115 GSQDRQALQQVMAQTDCLALA----------------------QRDYRVLSGGEQQRVQLARVLAQLWQ------PQPTP 166 (266)
T ss_dssp STTHHHHHHHHHHHTTCSTTT----------------------TSBGGGCCHHHHHHHHHHHHHHHTCC------SSCCC
T ss_pred cHHHHHHHHHHHHHcCChhHh----------------------cCCcccCCHHHHHHHHHHHHHhcccc------cCCCC
Confidence 111122333444443321111 12233478999999999999977110 00149
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh----hhhccCCCccc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV----KRKHKGEETEE 581 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~----~~~~~~~~~~~ 581 (604)
++|||||| |++||+..+..+.++ ..+.+. +.|||+||||++++..+ ..-++|.....
T Consensus 167 ~lLllDEP-ts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 167 RWLFLDEP-TSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp EEEEECCC-CSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CEEEEeCc-cccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999 999999999998887 555443 57999999999998765 23456666543
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.84 E-value=5.8e-22 Score=202.45 Aligned_cols=176 Identities=16% Similarity=0.071 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE-----Ee-cCCeEEecCCCccCCCCCChhhhHhhcc--cc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI-----FL-TDNIRLCDCPGLVFPSKVPKPLQVLMGS--FP 440 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~-----~~-~~~~~l~D~pGl~~p~~~~~~~~~l~g~--~~ 440 (604)
.+||+||||||||||+++|+|+.+++.|.+...+..+... .. ....++.+.|...+.. ......+..+. ..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~-~tv~e~l~~~~~~~~ 114 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS-ASVYQDVSFGAVNMK 114 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS-SBHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc-CcHHHHHHHHHHHcC
Confidence 6899999999999999999999999988876555433100 00 1112334444211111 11111111111 00
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... ......+..++..+++..+. .+...++|||+.|+..+|++++.
T Consensus 115 ~~~-~~~~~~~~~~l~~~~L~~~~----------------------~~~~~~LSgGqkQRv~iAraL~~----------- 160 (275)
T 3gfo_A 115 LPE-DEIRKRVDNALKRTGIEHLK----------------------DKPTHCLSFGQKKRVAIAGVLVM----------- 160 (275)
T ss_dssp CCH-HHHHHHHHHHHHHTTCGGGT----------------------TSBGGGSCHHHHHHHHHHHHHTT-----------
T ss_pred CCH-HHHHHHHHHHHHHcCCchhh----------------------cCCcccCCHHHHHHHHHHHHHHc-----------
Confidence 000 00011233333333332111 12233468999999999999954
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh----hhhccCCCccc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV----KRKHKGEETEE 581 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~ 581 (604)
+|++|||||| |++||+.++..+.++ ..+. +.|.||||||||++++..+ ..-.+|.....
T Consensus 161 -~P~lLlLDEP-ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 161 -EPKVLILDEP-TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp -CCSEEEEECT-TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred -CCCEEEEECc-cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 4999999999 999999999988887 5554 4589999999999998765 33456665543
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.84 E-value=8.2e-22 Score=200.18 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE----------EE------ecCC-eEEecCCCccCCCCCCh
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT----------IF------LTDN-IRLCDCPGLVFPSKVPK 430 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~----------~~------~~~~-~~l~D~pGl~~p~~~~~ 430 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.. .. .... .++.+.+.+ ++.. ..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l-~~~l-tv 110 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL-WSHM-TV 110 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC-CTTS-CH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCccc-CCCC-cH
Confidence 3689999999999999999999999988887655443310 00 0011 233333332 2221 11
Q ss_pred hhhHhhccccccccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHH
Q psy3589 431 PLQVLMGSFPIAQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELL 508 (604)
Q Consensus 431 ~~~~l~g~~~i~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll 508 (604)
...+..+........ .....+..+++.+++... ...+...++|||+.++..+|++++
T Consensus 111 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~---------------------~~~~~~~~LSgGq~qRv~lAraL~ 169 (262)
T 1b0u_A 111 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDER---------------------AQGKYPVHLSGGQQQRVSIARALA 169 (262)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH---------------------HHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch---------------------hhcCCcccCCHHHHHHHHHHHHHh
Confidence 111111100000000 001122233333322111 012223357899999999999996
Q ss_pred HhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 509 RMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 509 ~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ ..-.+|....
T Consensus 170 ~~------------p~lllLDEP-ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 170 ME------------PDVLLFDEP-TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp TC------------CSEEEEEST-TTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cC------------CCEEEEeCC-CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 65 999999999 999999999999888 55555589999999999998765 2335565543
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.84 E-value=5.5e-22 Score=198.28 Aligned_cols=177 Identities=13% Similarity=-0.005 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-------c-CCeEEecCCCccCCCCCChhhhHhhccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-------T-DNIRLCDCPGLVFPSKVPKPLQVLMGSF 439 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-------~-~~~~l~D~pGl~~p~~~~~~~~~l~g~~ 439 (604)
-.+||+|||||||||||++|+|+.+++.|.+...+..+..... . .-.++.+.|.+. +.. .....+..+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~-~~~-tv~enl~~~~~ 109 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI-PLL-TALENVELPLI 109 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC-TTS-CHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC-CCC-cHHHHHHHHHH
Confidence 3699999999999999999999999998887654433211100 0 012333434322 211 11111111100
Q ss_pred cc--ccc--cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccce
Q psy3589 440 PI--AQL--REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGR 515 (604)
Q Consensus 440 ~i--~~l--~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~ 515 (604)
.. ... ......+..++..+++... ...+...++|||+.|+..+|++++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------~~~~~~~~LSgGq~QRv~iAral~~------ 162 (235)
T 3tif_A 110 FKYRGAMSGEERRKRALECLKMAELEER---------------------FANHKPNQLSGGQQQRVAIARALAN------ 162 (235)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHTTCCGG---------------------GTTCCGGGSCHHHHHHHHHHHHHTT------
T ss_pred hhhccCCCHHHHHHHHHHHHHHCCCChh---------------------hhhCChhhCCHHHHHHHHHHHHHHc------
Confidence 00 000 0001111222222221100 0012233478999999999999955
Q ss_pred eeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhhh---hhccCCCcc
Q psy3589 516 ICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNVK---RKHKGEETE 580 (604)
Q Consensus 516 l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~~---~~~~~~~~~ 580 (604)
+|++|||||| |++||+.....+.++ ..+.+ .|.|||+||||++.+.... .-++|....
T Consensus 163 ------~p~llllDEP-ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 163 ------NPPIILADQP-TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp ------CCSEEEEEST-TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred ------CCCEEEEeCC-cccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 4999999999 999999999998888 55544 4899999999998654332 335565544
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.84 E-value=1.2e-21 Score=206.79 Aligned_cols=178 Identities=13% Similarity=0.042 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------e-cCCeEEecCCCccCCCCCChhhhHhhcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------L-TDNIRLCDCPGLVFPSKVPKPLQVLMGSFP 440 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~-~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~ 440 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...++.+.... . ....++.+.+.+.....+...+........
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 368999999999999999999999999998866554432111 0 112233444433221111111111000000
Q ss_pred cccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 441 IAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 441 i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
.. .......+..+++.+++.... .+....+|||+.|+..+||+|+.
T Consensus 135 ~~-~~~~~~~v~~lL~~vgL~~~~----------------------~~~~~~LSGGqkQRVaIArAL~~----------- 180 (366)
T 3tui_C 135 TP-KDEVKRRVTELLSLVGLGDKH----------------------DSYPSNLSGGQKQRVAIARALAS----------- 180 (366)
T ss_dssp CC-HHHHHHHHHHHHHHHTCGGGT----------------------TCCTTTSCHHHHHHHHHHHHTTT-----------
T ss_pred CC-HHHHHHHHHHHHHHcCCchHh----------------------cCChhhCCHHHHHHHHHHHHHhc-----------
Confidence 00 000111233333333332211 11123467999999999999944
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh----hhhccCCCccc
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV----KRKHKGEETEE 581 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~~ 581 (604)
+|++|||||| |++||+.+...+.++ ..++ +.|.||||||||++++..+ ..-.+|.....
T Consensus 181 -~P~lLLlDEP-Ts~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 181 -NPKVLLCDQA-TSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp -CCSEEEEEST-TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred -CCCEEEEECC-CccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 4999999999 999999999998888 5554 4599999999999998775 23445655443
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.83 E-value=1.4e-21 Score=197.88 Aligned_cols=77 Identities=9% Similarity=-0.053 Sum_probs=63.2
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.|+..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..
T Consensus 152 ~~LSgGqkQrv~iAraL~~~------------p~lllLDEP-ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 218 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTN------------PKMIVMDEP-IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 218 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTC------------CSEEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGG
T ss_pred hhCCHHHHHHHHHHHHHHcC------------CCEEEEeCC-ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 35789999999999999665 999999999 999999999999888 5555558999999999999876
Q ss_pred h----hhhccCCCcc
Q psy3589 570 V----KRKHKGEETE 580 (604)
Q Consensus 570 ~----~~~~~~~~~~ 580 (604)
+ ....+|....
T Consensus 219 ~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 219 YIDHLYVMFNGQIIA 233 (257)
T ss_dssp GCSEEEEEETTEEEE
T ss_pred hCCEEEEEECCEEEE
Confidence 5 2335565543
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=7.8e-22 Score=195.77 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE------e--cCCeEEecCCCccCCCCCChhhhHhhcc--
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF------L--TDNIRLCDCPGLVFPSKVPKPLQVLMGS-- 438 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~------~--~~~~~l~D~pGl~~p~~~~~~~~~l~g~-- 438 (604)
.+||+|+||||||||+++|+|+.+++.|.+...+..+.... . ..-.++.+.+.+. +.. .....+..+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~-~~~-tv~e~l~~~~~~ 109 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI-PEL-TALENVIVPMLK 109 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC-TTS-CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC-CCC-CHHHHHHhHHHH
Confidence 68999999999999999999999998887755443321100 0 0012233333322 211 1111111110
Q ss_pred cccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 439 FPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 439 ~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
..... ......+..+++.+++... ..+...++|||+.++..+|++++.
T Consensus 110 ~~~~~-~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LSgGq~qrv~laral~~--------- 157 (224)
T 2pcj_A 110 MGKPK-KEAKERGEYLLSELGLGDK----------------------LSRKPYELSGGEQQRVAIARALAN--------- 157 (224)
T ss_dssp TTCCH-HHHHHHHHHHHHHTTCTTC----------------------TTCCGGGSCHHHHHHHHHHHHTTT---------
T ss_pred cCCCH-HHHHHHHHHHHHHcCCchh----------------------hhCChhhCCHHHHHHHHHHHHHHc---------
Confidence 00000 0001112222222222110 012223467999999999999944
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
+|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++.
T Consensus 158 ---~p~lllLDEP-t~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 204 (224)
T 2pcj_A 158 ---EPILLFADEP-TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAE 204 (224)
T ss_dssp ---CCSEEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHT
T ss_pred ---CCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 4999999999 999999999998887 555545899999999999873
No 10
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.83 E-value=1.5e-21 Score=195.59 Aligned_cols=175 Identities=17% Similarity=0.124 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCC-eEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+.... .... .++.+.+.+ ++.. .....+..+.. .....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l-~~~l-tv~enl~~~~~-~~~~~ 101 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL-FPHL-SVYRNIAYGLR-NVERV 101 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC-CTTS-CHHHHHHTTCT-TSCHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCcc-CCCC-cHHHHHHHHHH-HcCCc
Confidence 369999999999999999999999998888755443321000 0011 122222222 1111 11111111110 00000
Q ss_pred CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCc
Q psy3589 446 EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQY 525 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~l 525 (604)
.....+..+++.+++.... .+...++|||+.++..+|++++.+ |++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~----------------------~~~~~~LSgGqkqRv~lAral~~~------------p~l 147 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLL----------------------DRKPARLSGGERQRVALARALVIQ------------PRL 147 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTT----------------------TCCGGGSCHHHHHHHHHHHHHTTC------------CSS
T ss_pred hHHHHHHHHHHHcCCHHHh----------------------cCChhhCCHHHHHHHHHHHHHHcC------------CCE
Confidence 0011222233332221110 112234679999999999999554 999
Q ss_pred ccccCCCcCCCCHHHHHHHHHh-hhhcC-CCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 526 LSKQEYWEKHPDIDEILWIQAR-TKEEP-YKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 526 LLLDEP~T~~LD~~~~~~L~~~-~~l~~-~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|||||| |++||+.++..+.++ ..+.+ .|.|||+||||++++..+ ...++|....
T Consensus 148 llLDEP-ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 148 LLLDEP-LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp BEEEST-TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 999999999999888 44543 489999999999988665 2335565443
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.83 E-value=4.2e-21 Score=202.34 Aligned_cols=164 Identities=16% Similarity=0.085 Sum_probs=104.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE----EE-e-cCCeEEecCCCccCCCCCChhhhHhhcccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT----IF-L-TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIA 442 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~----~~-~-~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~ 442 (604)
.++|+|||||||||||++|+|+..++.|.+...++.+.. .. . ....++.+.+.+ ||.. +....+..+... .
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l-~p~l-tV~eni~~~l~~-~ 108 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL-FPHL-TVYRNIAYGLGN-G 108 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC-CTTS-CHHHHHHTTSTT-S
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcC-CCCC-CHHHHHHHHHHH-c
Confidence 589999999999999999999999999988666554411 00 0 112233444432 2221 222222222110 0
Q ss_pred ccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeec
Q psy3589 443 QLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCL 520 (604)
Q Consensus 443 ~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~ 520 (604)
... .....+..+++.+++..+. .+....+||||.|+..+||+|+.+
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~----------------------~r~~~~LSGGq~QRValArAL~~~---------- 156 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELA----------------------GRYPHELSGGQQQRAALARALAPD---------- 156 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGT----------------------TSCGGGSCHHHHHHHHHHHHHTTC----------
T ss_pred CCChHHHHHHHHHHHHHcCCchHh----------------------cCChhhCCHHHHHHHHHHHHHHcC----------
Confidence 000 0112233344443332211 122234679999999999999554
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-hh-hcCCCCeEEEEecChhhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-TK-EEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+..+..+... .. +++.|.|||+||||++++..+
T Consensus 157 --P~lLLLDEP-ts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 157 --PELILLDEP-FSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY 205 (359)
T ss_dssp --CSEEEEEST-TTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred --CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 999999999 999999998888764 33 456799999999999999876
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.83 E-value=1.4e-21 Score=198.35 Aligned_cols=176 Identities=11% Similarity=0.063 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EE---EecCC-eEEecCCCccCCCCCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TI---FLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~---~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+. .. ..... .++.+.+.+ ++.. .....+..+....
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l-~~~~-tv~e~l~~~~~~~ 128 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL-FPHM-TVLNNITLAPMKV 128 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC-CTTS-CHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcC-CCCC-CHHHHHHHHHHHH
Confidence 368999999999999999999999998888755443321 00 00001 123333332 2211 1111111110000
Q ss_pred cccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 442 AQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 442 ~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... .....+..+++.+++.... .+...++|||+.++..+|++++.+
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~L~~~~----------------------~~~~~~LSgGqkQRv~lAraL~~~--------- 177 (263)
T 2olj_A 129 RKWPREKAEAKAMELLDKVGLKDKA----------------------HAYPDSLSGGQAQRVAIARALAME--------- 177 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGT----------------------TSCGGGSCHHHHHHHHHHHHHTTC---------
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHh----------------------cCChhhCCHHHHHHHHHHHHHHCC---------
Confidence 0000 0011122233332221110 122335789999999999999554
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ ....+|....
T Consensus 178 ---p~lllLDEP-ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 178 ---PKIMLFDEP-TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp ---CSEEEEEST-TTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---CCEEEEeCC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999999888 55544589999999999998765 2335565543
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=4.6e-21 Score=192.17 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE----ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF----LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~----~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.+||+|+||||||||+++|+|+.+++.|.+...+..+.... ....+ ++.+.+.+ ++.. .....+..+..+...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l-~~~l-tv~enl~~~~~~~~~ 111 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI-FPEL-TVYENLMMGAYNRKD 111 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC-CTTS-BHHHHHHGGGTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCcc-CCCC-cHHHHHHHhhhcCCC
Confidence 69999999999999999999999998888755443321100 01112 33333332 2211 111222111111000
Q ss_pred ccCchHHHHHHHHhcC-HHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 444 LREPYSTVQYLAERMD-LIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~-l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.......+..+++.++ +... ..+...++|||+.++..+|++++.+
T Consensus 112 ~~~~~~~~~~~l~~~~~l~~~----------------------~~~~~~~LSgGq~qrv~lAraL~~~------------ 157 (240)
T 1ji0_A 112 KEGIKRDLEWIFSLFPRLKER----------------------LKQLGGTLSGGEQQMLAIGRALMSR------------ 157 (240)
T ss_dssp SSHHHHHHHHHHHHCHHHHTT----------------------TTSBSSSSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHHHHcccHhhH----------------------hcCChhhCCHHHHHHHHHHHHHHcC------------
Confidence 0000112222222221 2110 0122334679999999999999554
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ ....+|...
T Consensus 158 p~lllLDEP-ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 158 PKLLMMDEP-SLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp CSEEEEECT-TTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999 999999999999888 55554689999999999887665 233555544
No 14
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.83 E-value=9.6e-21 Score=191.31 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCC-eEEecCCCccCCCCCChhhhHhhcccccccc---
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL--- 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l--- 444 (604)
.+||+|+||||||||+++|+|+.+++.|.+. .... .++.+.+.+.+.. .....+..+..+....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----------~~~~i~~v~q~~~~~~~~--tv~enl~~~~~~~~~~~~~ 100 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----------VYQSIGFVPQFFSSPFAY--SVLDIVLMGRSTHINTFAK 100 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCSEEEEE----------ECSCEEEECSCCCCSSCC--BHHHHHHGGGGGGSCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----------EeccEEEEcCCCccCCCC--CHHHHHHHhhhhhcccccC
Confidence 5899999999999999999999999888764 1122 2333444432211 2222222221110000
Q ss_pred cC--chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCC
Q psy3589 445 RE--PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMP 522 (604)
Q Consensus 445 ~~--~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~p 522 (604)
.. ....+..++..+++.... .+...++|||+.++..+|++++.+
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~LSgGq~qrv~lAraL~~~------------ 146 (253)
T 2nq2_C 101 PKSHDYQVAMQALDYLNLTHLA----------------------KREFTSLSGGQRQLILIARAIASE------------ 146 (253)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGT----------------------TSBGGGSCHHHHHHHHHHHHHHTT------------
T ss_pred CCHHHHHHHHHHHHHcCChHHh----------------------cCChhhCCHHHHHHHHHHHHHHcC------------
Confidence 00 012233344443332111 122335789999999999999666
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHh-hhhcCC-CCeEEEEecChhhhhhh
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+.++..+.++ ..+.+. |.|||+||||++++..+
T Consensus 147 p~lllLDEP-ts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 195 (253)
T 2nq2_C 147 CKLILLDEP-TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI 195 (253)
T ss_dssp CSEEEESSS-STTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 999999999 999999999998887 455444 89999999999998654
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=1.9e-21 Score=196.76 Aligned_cols=175 Identities=15% Similarity=0.066 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE--EecCC-eEEecCCCccCCCC-CChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI--FLTDN-IRLCDCPGLVFPSK-VPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~--~~~~~-~~l~D~pGl~~p~~-~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+|||||||||++|+|+.+++.|.+...+..+... ..... .++.+.+.+. +.. +...+...........
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~-~~ltv~enl~~~~~~~~~~~ 120 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-RNMQGIEYLRFVAGFYASSS 120 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCC-TTSBHHHHHHHHHHHHCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCC-CCCcHHHHHHHHHHHcCCCh
Confidence 36999999999999999999999999888875444322100 00111 2333433332 211 1111111000000000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+..+++.+++.... .+...++|||+.++..+|++++.+ |
T Consensus 121 -~~~~~~~~~~l~~~gL~~~~----------------------~~~~~~LSgGq~qRv~lAraL~~~------------p 165 (256)
T 1vpl_A 121 -SEIEEMVERATEIAGLGEKI----------------------KDRVSTYSKGMVRKLLIARALMVN------------P 165 (256)
T ss_dssp -HHHHHHHHHHHHHHCCGGGG----------------------GSBGGGCCHHHHHHHHHHHHHTTC------------C
T ss_pred -HHHHHHHHHHHHHCCCchHh----------------------cCChhhCCHHHHHHHHHHHHHHcC------------C
Confidence 00001122222222221110 122335689999999999999554 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~ 579 (604)
++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ ....+|...
T Consensus 166 ~lllLDEP-ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 166 RLAILDEP-TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp SEEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred CEEEEeCC-ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence 99999999 999999999999888 55555689999999999998764 233455544
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.82 E-value=3.8e-21 Score=204.10 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCC-eEEecCCCccCCCCCChhhhHhhcc--cccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDN-IRLCDCPGLVFPSKVPKPLQVLMGS--FPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~-~~l~D~pGl~~p~~~~~~~~~l~g~--~~i~~l 444 (604)
.++|+|||||||||||++|+|+..++.|.+...++.+..... ... .++.+.+.+ ||.. +....+..+. .....
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l-~p~l-tV~eni~~~~~~~~~~~- 107 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL-YPHL-SVAENMSFGLKLAGAKK- 107 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCC-CTTS-CHHHHHTHHHHHTTCCH-
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcC-CCCC-CHHHHHHHHHHHcCCCH-
Confidence 589999999999999999999999999987655544321110 111 233444433 2221 1111111110 00000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++..+. .+....+||||.|+..+||+|+.+ |+
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~----------------------~r~p~~LSGGqrQRVaiArAL~~~------------P~ 153 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLL----------------------DRKPKALSGGQRQRVAIGRTLVAE------------PS 153 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGT----------------------TCCGGGSCHHHHHHHHHHHHHHHC------------CS
T ss_pred HHHHHHHHHHHHHcCCchhh----------------------cCChhHCCHHHHHHHHHHHHHHcC------------CC
Confidence 00012233333333332211 122234689999999999999777 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+..+..+... ..+. +.|.|||+||||++++..+
T Consensus 154 lLLLDEP-ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~ 200 (381)
T 3rlf_A 154 VFLLDEP-LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200 (381)
T ss_dssp EEEEEST-TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHH
T ss_pred EEEEECC-CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 9999999 999999998888877 4453 4599999999999999876
No 17
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.82 E-value=9.1e-21 Score=192.90 Aligned_cols=167 Identities=16% Similarity=0.059 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCe-EEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
-.+||+|+||||||||+++|+|+.+++.|.+...+..+........+ ++.+.|...++. ......+..+.........
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~ 112 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA-ERVFDEVAFAVKNFYPDRD 112 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCC-SSHHHHHHHTTTTTCTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCC-CcHHHHHHHHHHhcCCHHH
Confidence 36999999999999999999999999988876544332110111122 333333211221 1222222111100000011
Q ss_pred chHHHHHHHHhcCHH--HHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 447 PYSTVQYLAERMDLI--KLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~--~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
....+..+++.+++. ... .+...++|||+.++..+|++++.+ |+
T Consensus 113 ~~~~~~~~l~~~gl~~~~~~----------------------~~~~~~LSgGq~qRv~lAraL~~~------------p~ 158 (266)
T 2yz2_A 113 PVPLVKKAMEFVGLDFDSFK----------------------DRVPFFLSGGEKRRVAIASVIVHE------------PD 158 (266)
T ss_dssp SHHHHHHHHHHTTCCHHHHT----------------------TCCGGGSCHHHHHHHHHHHHHTTC------------CS
T ss_pred HHHHHHHHHHHcCcCCcccc----------------------cCChhhCCHHHHHHHHHHHHHHcC------------CC
Confidence 122344444444432 211 122234679999999999999554 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 159 lllLDEP-ts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~ 204 (266)
T 2yz2_A 159 ILILDEP-LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINH 204 (266)
T ss_dssp EEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGG
T ss_pred EEEEcCc-cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9999999 999999999999888 55544489999999999988764
No 18
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.81 E-value=5.2e-20 Score=185.42 Aligned_cols=170 Identities=15% Similarity=0.072 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecC-CeEEecCCCccCCCCCChhhhHhhcccccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l 444 (604)
.++|+|+|||||||||++|+|+.+++ |.+...+..+.... ... ..++.+.+.+. +. ......+..+... ..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~-~~-~tv~e~l~~~~~~--~~ 102 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPP-FA-TPVWHYLTLHQHD--KT 102 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCC-TT-CBHHHHHHTTCSS--TT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccC-CC-CcHHHHHHHhhcc--CC
Confidence 68999999999999999999999998 88755443321000 001 12333444332 21 1222222221111 00
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
....+..++..+++.... .+...++|||+.++..+|++++.+ |+
T Consensus 103 --~~~~~~~~l~~~~l~~~~----------------------~~~~~~LSgGq~qrv~lAraL~~~------------p~ 146 (249)
T 2qi9_C 103 --RTELLNDVAGALALDDKL----------------------GRSTNQLSGGEWQRVRLAAVVLQI------------TP 146 (249)
T ss_dssp --CHHHHHHHHHHTTCGGGT----------------------TSBGGGCCHHHHHHHHHHHHHHHH------------CT
T ss_pred --cHHHHHHHHHHcCChhHh----------------------cCChhhCCHHHHHHHHHHHHHHcC------------CC
Confidence 123344444444432211 122334789999999999999888 88
Q ss_pred -------cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh----hhhccCCCcc
Q psy3589 525 -------YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 525 -------lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
+|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+ ....+|....
T Consensus 147 ~~~~~~~lllLDEP-ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 147 QANPAGQLLLLDEP-MNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp TTCTTCCEEEESST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCCCeEEEEECC-cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999999999888 55544589999999999998655 2335565443
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=6.9e-21 Score=195.01 Aligned_cols=178 Identities=14% Similarity=0.012 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
-.+||+|+|||||||||++|+|+.+++.|.+...+..+. ... ....+ ++.+.+.+.+.........+..+..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 368999999999999999999999998888765544332 100 01112 233333222221112222222111100
Q ss_pred ccc---cC--chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhcccee
Q psy3589 442 AQL---RE--PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRI 516 (604)
Q Consensus 442 ~~l---~~--~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l 516 (604)
..+ .. ....+..+++.+++.... .+...++|||+.++..+|++++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------------------~~~~~~LSgGqkqRv~lAraL~~~------ 179 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAKA----------------------QQYIGYLSTGEKQRVMIARALMGQ------ 179 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGGT----------------------TSBGGGSCHHHHHHHHHHHHHHTC------
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhHh----------------------cCChhhCCHHHHHHHHHHHHHhCC------
Confidence 000 00 011122223332221110 122335789999999999999665
Q ss_pred eeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeE--EEEecChhhhhhh----hhhccCCCcc
Q psy3589 517 CLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPL--VSVSDDEAEGKNV----KRKHKGEETE 580 (604)
Q Consensus 517 ~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tV--IiVTHD~~e~~~~----~~~~~~~~~~ 580 (604)
|++|||||| |++||+.++..+.++ ..+.+.|.|| |+||||++++..+ ....+|....
T Consensus 180 ------p~lLlLDEP-ts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 180 ------PQVLILDEP-AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp ------CSEEEEEST-TTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred ------CCEEEEeCC-ccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999 999999999998888 4454448899 9999999988654 2335555443
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.81 E-value=2e-20 Score=198.70 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE------EEe-cCCe-EEecCCCccCCCCCChhhhHhhcc--
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT------IFL-TDNI-RLCDCPGLVFPSKVPKPLQVLMGS-- 438 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~------~~~-~~~~-~l~D~pGl~~p~~~~~~~~~l~g~-- 438 (604)
.++|+|||||||||||++|+|+..++.|.+...++.+.. ... ...+ ++.+.+.+ |+.. .....+..+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l-~~~l-tv~eni~~~~~~ 108 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL-YPHM-TVYDNIAFPLKL 108 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC-CTTS-CHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCcc-CCCC-CHHHHHHHHHHH
Confidence 589999999999999999999999999988766554432 110 1112 23333332 2211 1111111110
Q ss_pred cccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeee
Q psy3589 439 FPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICL 518 (604)
Q Consensus 439 ~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~a 518 (604)
..... ......+..+++.+++..+. .+...++||||.|+.++||+|+.+
T Consensus 109 ~~~~~-~~~~~~v~~~l~~~~L~~~~----------------------~r~~~~LSGGq~QRvalArAL~~~-------- 157 (372)
T 1g29_1 109 RKVPR-QEIDQRVREVAELLGLTELL----------------------NRKPRELSGGQRQRVALGRAIVRK-------- 157 (372)
T ss_dssp TTCCH-HHHHHHHHHHHHHHTCGGGT----------------------TCCGGGSCHHHHHHHHHHHHHHTC--------
T ss_pred cCCCH-HHHHHHHHHHHHHCCCchHh----------------------cCCcccCCHHHHHHHHHHHHHhcC--------
Confidence 00000 00011122223322221111 122334789999999999999666
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+..+..+..+ ..+. +.|.|||+||||++++..+
T Consensus 158 ----P~lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 206 (372)
T 1g29_1 158 ----PQVFLMDEP-LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM 206 (372)
T ss_dssp ----CSEEEEECT-TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred ----CCEEEECCC-CccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh
Confidence 999999999 999999999888877 4443 3489999999999998765
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.81 E-value=1.7e-21 Score=191.96 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCe-EEecCCCccCCCC-CChhhhHhhcccccccccC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNI-RLCDCPGLVFPSK-VPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~-~l~D~pGl~~p~~-~~~~~~~l~g~~~i~~l~~ 446 (604)
.++|+|+|||||||||++|+|+.+++.|.+...+..+. .....+ ++.+.+.+ ++.. +...+......... ..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~-~~~~tv~enl~~~~~~~~~---~~ 110 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIV-PRKISVEDYLKAVASLYGV---KV 110 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCC-CTTSBHHHHHHHHHHHTTC---CC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcC-CCCCCHHHHHHHHHHhcCC---ch
Confidence 58999999999999999999999998888765443321 011122 33343433 2221 11111111010000 00
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
....+..+++.+++.. + .+...++|||+.++..+|++++ .+|++|
T Consensus 111 ~~~~~~~~l~~~gl~~---------------------~--~~~~~~LSgGqkqrv~laraL~------------~~p~ll 155 (214)
T 1sgw_A 111 NKNEIMDALESVEVLD---------------------L--KKKLGELSQGTIRRVQLASTLL------------VNAEIY 155 (214)
T ss_dssp CHHHHHHHHHHTTCCC---------------------T--TSBGGGSCHHHHHHHHHHHHTT------------SCCSEE
T ss_pred HHHHHHHHHHHcCCCc---------------------C--CCChhhCCHHHHHHHHHHHHHH------------hCCCEE
Confidence 1122333333332210 0 1223346799999999999994 459999
Q ss_pred cccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 156 lLDEP-ts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~ 199 (214)
T 1sgw_A 156 VLDDP-VVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDV 199 (214)
T ss_dssp EEEST-TTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSE
T ss_pred EEECC-CcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 99999 999999998888887 44544589999999999998765
No 22
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.81 E-value=1.7e-20 Score=198.10 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCCe-EEecCCCccCCCCCChhhhHhhcccccccc--
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQL-- 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l-- 444 (604)
.++|+|||||||||||++|+|+..++.|.+...+..+.... ....+ ++.+.+.+ |+.. .....+..+.. ....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l-~~~l-tv~eni~~~~~-~~~~~~ 107 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYAL-YPHM-TVFENIAFPLR-ARRISK 107 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCC-CTTS-CHHHHHHGGGS-SSCSHH
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCccc-CCCC-CHHHHHHHHHH-hcCCCH
Confidence 58999999999999999999999999888765544321110 01122 33343332 2221 22222222110 0000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++..+. .+...++||||.|+.++||+++.+ |+
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~----------------------~r~~~~LSgGq~QRvalArAL~~~------------P~ 153 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLL----------------------DRKPTQLSGGQQQRVALARALVKQ------------PK 153 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGT----------------------TSCGGGSCHHHHHHHHHHHHHTTC------------CS
T ss_pred HHHHHHHHHHHHHcCCchHh----------------------cCChhhCCHHHHHHHHHHHHHHcC------------CC
Confidence 00112233444444332211 112234679999999999999554 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+..+..+..+ ..+. +.|.|+|+||||++++..+
T Consensus 154 lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ 200 (359)
T 2yyz_A 154 VLLFDEP-LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTM 200 (359)
T ss_dssp EEEEEST-TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH
T ss_pred EEEEECC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 9999999 999999999888887 4443 3489999999999998765
No 23
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.81 E-value=1.3e-20 Score=199.00 Aligned_cols=164 Identities=17% Similarity=0.130 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE-----EE-ecCC-eEEecCCCccCCCCCChhhhHhhccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT-----IF-LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~-----~~-~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
.++|+|||||||||||++|+|+..++.|.+...++.+.. .. .... .++.+.+.+ |+.. .....+..+...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l-~~~l-tv~eni~~~~~~- 109 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL-YPNL-TAFENIAFPLTN- 109 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC-CTTS-CHHHHHHGGGTT-
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCcc-CCCC-CHHHHHHHHHHH-
Confidence 589999999999999999999999999988766554432 10 0112 234444433 2321 222222222100
Q ss_pred cccc--CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeee
Q psy3589 442 AQLR--EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519 (604)
Q Consensus 442 ~~l~--~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al 519 (604)
.... .....+..+++.+++..+. .+...++||||.|+..+||+|+.+
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~----------------------~~~~~~LSGGq~QRvalAraL~~~--------- 158 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVL----------------------NHFPRELSGAQQQRVALARALVKD--------- 158 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGT----------------------TSCGGGSCHHHHHHHHHHHHHTTC---------
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHh----------------------cCChhhCCHHHHHHHHHHHHHHhC---------
Confidence 0000 0012233344444332211 112234679999999999999554
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|++|||||| |++||+..+..+..+ ..+. +.|.|||+||||++++..+
T Consensus 159 ---P~lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ 207 (353)
T 1oxx_K 159 ---PSLLLLDEP-FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI 207 (353)
T ss_dssp ---CSEEEEEST-TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH
T ss_pred ---CCEEEEECC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999 999999998888877 4443 4589999999999998765
No 24
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.81 E-value=1.3e-20 Score=198.53 Aligned_cols=164 Identities=19% Similarity=0.117 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCCe-EEecCCCccCCCCCChhhhHhhcc--cccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDNI-RLCDCPGLVFPSKVPKPLQVLMGS--FPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~--~~i~~l 444 (604)
.++|+|||||||||||++|+|+..++.|.+...+..+.... ....+ ++.+.+.+ |+.. .....+..+. .....
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l-~~~l-tv~eni~~~l~~~~~~~- 119 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYAL-FQHM-TVYDNVSFGLREKRVPK- 119 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCC-CTTS-CHHHHHHHHHHHTTCCH-
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCccc-CCCC-CHHHHHHHHHHHcCCCH-
Confidence 58999999999999999999999999888765444321100 01112 23333332 2221 1111111110 00000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++..+. .+...++||||.|+..+||+|+.+ |+
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~----------------------~r~~~~LSGGq~QRvalArAL~~~------------P~ 165 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYA----------------------NRFPHELSGGQQQRVALARALAPR------------PQ 165 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGT----------------------TSCGGGSCHHHHHHHHHHHHHTTC------------CS
T ss_pred HHHHHHHHHHHHHcCChhHh----------------------cCCcccCCHHHHHHHHHHHHHHcC------------CC
Confidence 00011222333333222111 122234789999999999999554 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+..+..+..+ ..+. +.|.|||+||||++++..+
T Consensus 166 lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 212 (355)
T 1z47_A 166 VLLFDEP-FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV 212 (355)
T ss_dssp EEEEEST-TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred EEEEeCC-cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh
Confidence 9999999 999999999888877 4443 3489999999999998775
No 25
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.81 E-value=8.2e-21 Score=199.88 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecCCeEEecCCCccCCCCCChhhhHhhcccccccccC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLRE 446 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~ 446 (604)
.++|+|||||||||||++|+|+..++.|.+...++.+.... ...-.++.+.+.+ |+.. +....+..+.. ......
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l-~~~l-tv~enl~~~~~-~~~~~~ 104 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL-FPHM-NVKKNLEFGMR-MKKIKD 104 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCC-CTTS-CHHHHHHHHHH-HHCCCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCccc-CCCC-CHHHHHHHHHH-HcCCCH
Confidence 68999999999999999999999999888765544321100 0111233333332 2221 11111111100 000000
Q ss_pred chHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcc
Q psy3589 447 PYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYL 526 (604)
Q Consensus 447 ~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lL 526 (604)
. ..+..+++.+++..+. .+...++||||.|+..+||+|+ .+|++|
T Consensus 105 ~-~~v~~~l~~~~L~~~~----------------------~~~~~~LSgGq~QRvalAraL~------------~~P~lL 149 (348)
T 3d31_A 105 P-KRVLDTARDLKIEHLL----------------------DRNPLTLSGGEQQRVALARALV------------TNPKIL 149 (348)
T ss_dssp H-HHHHHHHHHTTCTTTT----------------------TSCGGGSCHHHHHHHHHHHHTT------------SCCSEE
T ss_pred H-HHHHHHHHHcCCchHh----------------------cCChhhCCHHHHHHHHHHHHHH------------cCCCEE
Confidence 0 2233333333321111 1222346799999999999994 459999
Q ss_pred cccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 527 SKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 527 LLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
||||| |++||+..+..+..+ ..+. +.|.|||+||||++++..+
T Consensus 150 LLDEP-~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ 194 (348)
T 3d31_A 150 LLDEP-LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM 194 (348)
T ss_dssp EEESS-STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEECc-cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 99999 999999999888887 4443 4589999999999998766
No 26
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.80 E-value=2.3e-20 Score=198.03 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--cCCeEEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--TDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|||||||||||++|+|+..++.|.+...++.+..... ..-.++.+.+.+ |+.. .....+..+.. .....
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l-~~~l-tv~eni~~~~~-~~~~~ 114 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAV-WPHM-TVYENIAFPLK-IKKFP 114 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-------CC-CHHHHHHTTCC---CCC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCccc-CCCC-CHHHHHHHHHH-hcCCC
Confidence 3689999999999999999999999998887654433211000 111233333332 2221 22222222210 00000
Q ss_pred --CchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 446 --EPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 446 --~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..+++.+++..+. .+...++||||.|+.++||+|+.+ |
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~----------------------~r~~~~LSGGq~QRvalArAL~~~------------P 160 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELL----------------------NRYPAQLSGGQRQRVAVARAIVVE------------P 160 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGT----------------------TSCTTTCCSSCHHHHHHHHHHTTC------------C
T ss_pred HHHHHHHHHHHHHHcCChhHh----------------------cCChhhCCHHHHHHHHHHHHHhcC------------C
Confidence 0011233344444332211 112234689999999999999554 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||||| |++||+..+..+..+ ..+. +.|.|||+||||++++..+
T Consensus 161 ~lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 208 (372)
T 1v43_A 161 DVLLMDEP-LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM 208 (372)
T ss_dssp SEEEEEST-TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred CEEEEcCC-CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 99999999 999999999888877 4443 3489999999999998765
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.80 E-value=1e-20 Score=200.07 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE-ecCCe-EEecCCCccCCCCCChhhhHhhcc--cccccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF-LTDNI-RLCDCPGLVFPSKVPKPLQVLMGS--FPIAQL 444 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~-~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~--~~i~~l 444 (604)
.++|+|||||||||||++|+|+..++.|.+...++.+.... ....+ ++.+.+.+ |+.. .....+..+. .....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l-~~~l-tv~eni~~~~~~~~~~~- 107 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWAL-YPHM-TVYKNIAFPLELRKAPR- 107 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCC-CTTS-CHHHHHHHHHHHTTCCH-
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCccc-CCCC-CHHHHHHHHHHhcCCCH-
Confidence 58999999999999999999999999888765544321100 01112 23333332 2221 1111111110 00000
Q ss_pred cCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 445 REPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 445 ~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
......+..+++.+++..+. .+...++||||.|+..+||+|+.+ |+
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~----------------------~r~~~~LSGGq~QRvalArAL~~~------------P~ 153 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLL----------------------NRYPWQLSGGQQQRVAIARALVKE------------PE 153 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCT----------------------TCCGGGSCHHHHHHHHHHHHHTTC------------CS
T ss_pred HHHHHHHHHHHHHcCCchHh----------------------hCChhhCCHHHHHHHHHHHHHHcC------------CC
Confidence 00011222233332221110 122234789999999999999554 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+..+..+..+ ..+. +.|.|+|+||||++++..+
T Consensus 154 lLLLDEP-~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 200 (362)
T 2it1_A 154 VLLLDEP-LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAM 200 (362)
T ss_dssp EEEEESG-GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred EEEEECc-cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9999999 999999999888877 4443 3489999999999998765
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.80 E-value=1.5e-20 Score=189.56 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=59.3
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV- 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~- 570 (604)
+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++..+
T Consensus 144 LSgGqkQrv~iAraL~~~------------p~lllLDEP-ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~ 210 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLE------------PTYAVLDET-DSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQ 210 (250)
T ss_dssp ----HHHHHHHHHHHHHC------------CSEEEEECG-GGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSC
T ss_pred CCHHHHHHHHHHHHHHcC------------CCEEEEeCC-CcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhc
Confidence 679999999999999777 999999999 999999999999888 55655689999999999988764
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
. .-.+|....
T Consensus 211 ~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 211 PDKVHVMMDGRVVA 224 (250)
T ss_dssp CSEEEEEETTEEEE
T ss_pred CCEEEEEECCEEEE
Confidence 3 234555443
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=8.5e-20 Score=185.31 Aligned_cols=158 Identities=14% Similarity=0.045 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCe--EEecCCCccCCCCCChhhhHhhccccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNI--RLCDCPGLVFPSKVPKPLQVLMGSFPIAQLR 445 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~--~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~ 445 (604)
-.++|+|+|||||||||++|+|+. |+.|.+...+..+........+ ++.+.+.+ .......+..+. ... .
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l----~~tv~enl~~~~-~~~--~ 102 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI----GVTVNDIVYLYE-ELK--G 102 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT----TSBHHHHHHHHH-HHT--C
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc----CCcHHHHHHHhh-hhc--c
Confidence 369999999999999999999999 9888775444322100001111 12222221 111111110000 000 0
Q ss_pred CchHHHHHHHHhcCHH-HHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCC
Q psy3589 446 EPYSTVQYLAERMDLI-KLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ 524 (604)
Q Consensus 446 ~~~~~i~~l~~~~~l~-~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~ 524 (604)
.....+..++..+++. .. ..+...++|||+.++..+|++++.+ |+
T Consensus 103 ~~~~~~~~~l~~~gl~~~~----------------------~~~~~~~LSgGqkqRv~lAraL~~~------------p~ 148 (263)
T 2pjz_A 103 LDRDLFLEMLKALKLGEEI----------------------LRRKLYKLSAGQSVLVRTSLALASQ------------PE 148 (263)
T ss_dssp CCHHHHHHHHHHTTCCGGG----------------------GGSBGGGSCHHHHHHHHHHHHHHTC------------CS
T ss_pred hHHHHHHHHHHHcCCChhH----------------------hcCChhhCCHHHHHHHHHHHHHHhC------------CC
Confidence 0111222233332221 10 0122335789999999999999665 99
Q ss_pred cccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 525 YLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 525 lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||||| |++||+.++..+.++ +.+...|||+||||++++..+
T Consensus 149 lllLDEP-ts~LD~~~~~~l~~~--L~~~~~tviivtHd~~~~~~~ 191 (263)
T 2pjz_A 149 IVGLDEP-FENVDAARRHVISRY--IKEYGKEGILVTHELDMLNLY 191 (263)
T ss_dssp EEEEECT-TTTCCHHHHHHHHHH--HHHSCSEEEEEESCGGGGGGC
T ss_pred EEEEECC-ccccCHHHHHHHHHH--HHHhcCcEEEEEcCHHHHHHh
Confidence 9999999 999999999999988 333222999999999987644
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.78 E-value=8e-20 Score=186.01 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=62.6
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh-
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV- 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~- 570 (604)
+|||+.++..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.||||||||++++..+
T Consensus 165 LSgGq~QRv~iAraL~~~------------p~lLlLDEP-ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~ 231 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLE------------PELCILDES-DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIK 231 (267)
T ss_dssp CCHHHHHHHHHHHHHHHC------------CSEEEEEST-TTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSC
T ss_pred CCHHHHHHHHHHHHHHhC------------CCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhc
Confidence 689999999999999777 999999999 999999999999988 55555689999999999988653
Q ss_pred -h---hhccCCCcc
Q psy3589 571 -K---RKHKGEETE 580 (604)
Q Consensus 571 -~---~~~~~~~~~ 580 (604)
. ...+|....
T Consensus 232 ~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 232 PDYVHVLYQGRIVK 245 (267)
T ss_dssp CSEEEEEETTEEEE
T ss_pred CCEEEEEECCEEEE
Confidence 3 334565543
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.78 E-value=1.7e-19 Score=181.52 Aligned_cols=179 Identities=16% Similarity=0.076 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+|||||||||++|+|+.+++.|.+...+..+.... +... .++.+.|.+ ++. .....+..+. + .
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l-~~~--tv~enl~~~~-~--~ 109 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL-LNR--SIIDNISLAN-P--G 109 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC-TTS--BHHHHHTTTC-T--T
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcc-ccc--cHHHHHhccC-C--C
Confidence 369999999999999999999999998888755443321100 0011 233344433 221 2222222111 0 0
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++..++.. .|.. +-..+ ......+|||+.++..+|++++.+ |
T Consensus 110 --~~~~~~~~~l~~~~l~~~~~~-~~~g--------l~~~~--~~~~~~LSgGq~qRv~iAraL~~~------------p 164 (247)
T 2ff7_A 110 --MSVEKVIYAAKLAGAHDFISE-LREG--------YNTIV--GEQGAGLSGGQRQRIAIARALVNN------------P 164 (247)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHT-STTG--------GGCBC--STTTTCCCHHHHHHHHHHHHHTTC------------C
T ss_pred --CCHHHHHHHHHHhChHHHHHh-Ccch--------hhhhh--hCCCCCCCHHHHHHHHHHHHHhcC------------C
Confidence 112223334444333222210 0000 00000 011234679999999999999554 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
++|||||| |++||+.+...+.++ ..+. .|.||||||||++++..+. ...+|...
T Consensus 165 ~lllLDEP-ts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 165 KILIFDEA-TSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222 (247)
T ss_dssp SEEEECCC-CSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEE
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999999999888 4553 4899999999999876443 23445443
No 32
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=9.4e-20 Score=188.55 Aligned_cols=143 Identities=19% Similarity=0.225 Sum_probs=98.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhh--ccCCCcEEEEEeCCCCCCHHh----HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVT--GTLGKDMILVMNKIDLAPAPL----VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~--~~~~K~~ILVlNK~DLv~~~~----~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
+++++|+||+|+|+++|.++.+ .|++|+. +..+++.||||||+||+++.. ...|.++|...+ ..++++||.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g--~~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG--YDVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT--CCEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC--CeEEEEecC
Confidence 6999999999999999998776 7889985 246899999999999998754 688999997763 578888875
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhh
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGET 347 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 347 (604)
++.|+++|+..
T Consensus 160 ----------------------------~~~g~~~L~~~----------------------------------------- 170 (307)
T 1t9h_A 160 ----------------------------DQDSLADIIPH----------------------------------------- 170 (307)
T ss_dssp ----------------------------HHTTCTTTGGG-----------------------------------------
T ss_pred ----------------------------CCCCHHHHHhh-----------------------------------------
Confidence 23332222110
Q ss_pred hhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-------ccceeEEEEecCCeEEecCC
Q psy3589 348 IELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDCP 420 (604)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-------~t~~~q~~~~~~~~~l~D~p 420 (604)
..+ ..++|+|+||||||||||+|+|...+.+|.+.. +|+..+.+... ..+++|+|
T Consensus 171 ----------------~~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtp 232 (307)
T 1t9h_A 171 ----------------FQD-KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTP 232 (307)
T ss_dssp ----------------GTT-SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEESSC
T ss_pred ----------------cCC-CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcC-CEEEecCC
Confidence 011 378999999999999999999999998888874 33333333333 67899999
Q ss_pred CccCCC
Q psy3589 421 GLVFPS 426 (604)
Q Consensus 421 Gl~~p~ 426 (604)
|+....
T Consensus 233 g~~~~~ 238 (307)
T 1t9h_A 233 GFSSLE 238 (307)
T ss_dssp SCSSCC
T ss_pred Cccccc
Confidence 987543
No 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.77 E-value=5.5e-20 Score=187.60 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+|||||||||++|+|+.+++.|.+...+..+.... .... .++.+.|.+ ++. .....+..+...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l-~~~--tv~enl~~~~~~--- 119 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLL-FGR--SFRENIAYGLTR--- 119 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCC-CSS--BHHHHHHTTCSS---
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcc-ccc--cHHHHHhhhccc---
Confidence 368999999999999999999999998888765543321100 0011 233344433 221 222222222110
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHH----H--HhcchhhhccCcccHHHHHHHHHHhhccceee
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGW----A--QKRSYMTAKTGRYDSYRAANELLRMATEGRIC 517 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~----a--~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~ 517 (604)
. .....+...+....+.. +++.+ . ..+...++|||+.++..+||+|+.+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~-----------------~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~------- 174 (271)
T 2ixe_A 120 T-PTMEEITAVAMESGAHD-----------------FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK------- 174 (271)
T ss_dssp C-CCHHHHHHHHHHHTCHH-----------------HHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC-------
T ss_pred C-ChHHHHHHHHHHHhHHH-----------------HHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC-------
Confidence 0 00011111111111111 11111 0 0122334789999999999999555
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
|++|||||| |++||+.++..+.++ ..+. +.|.||||||||++++.... ...+|...
T Consensus 175 -----p~lllLDEP-ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 175 -----PRLLILDNA-TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235 (271)
T ss_dssp -----CSEEEEEST-TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEE
T ss_pred -----CCEEEEECC-ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 999999999 999999999999888 4443 34899999999999876443 23445443
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.77 E-value=8.4e-20 Score=183.34 Aligned_cols=181 Identities=12% Similarity=0.040 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEE---EecC-CeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI---FLTD-NIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~---~~~~-~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|+||||||||+++|+|+.+++.|.+...+..+... .... ..++.+.|.+ ++. .....+..+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-~~~--tv~enl~~~~~~--- 102 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI-MAG--TIRENLTYGLEG--- 102 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC-CCE--EHHHHTTSCTTS---
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc-ccc--cHHHHHhhhccC---
Confidence 46999999999999999999999999999886554332110 0111 1233343332 221 111111111000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+..++..+++..++.. .|.. +...+ .....++|||+.++..+|++++.+ |
T Consensus 103 -~~~~~~~~~~l~~~~l~~~~~~-~~~g--------l~~~~--~~~~~~LSgGq~qrv~lAral~~~------------p 158 (243)
T 1mv5_A 103 -DYTDEDLWQVLDLAFARSFVEN-MPDQ--------LNTEV--GERGVKISGGQRQRLAIARAFLRN------------P 158 (243)
T ss_dssp -CSCHHHHHHHHHHHTCTTTTTS-STTG--------GGCEE--STTSBCCCHHHHHHHHHHHHHHHC------------C
T ss_pred -CCCHHHHHHHHHHhChHHHHHh-Cccc--------hhchh--ccCcCcCCHHHHHHHHHHHHHhcC------------C
Confidence 0112223334444333222110 0000 00000 011224679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh---hhccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~~ 580 (604)
++|||||| |++||+.+...+.++ ..+. .|.|||+||||++++.... .-.+|....
T Consensus 159 ~lllLDEP-ts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 159 KILMLDEA-TASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp SEEEEECC-SCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred CEEEEECC-cccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99999999 999999888877777 4444 4899999999999876443 234555543
No 35
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.77 E-value=2.2e-19 Score=185.92 Aligned_cols=180 Identities=15% Similarity=0.114 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||||+||||||||+++|+|++.+..|.+...+..+..+.. ... .++.+.|.+ |+. .....+..+...
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~l-f~~--Tv~eNi~~~~~~--- 154 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL-FND--TIADNIRYGRVT--- 154 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCC-CSE--EHHHHHHTTSTT---
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCcc-Ccc--cHHHHHHhhccc---
Confidence 4799999999999999999999999999887655544322110 111 233333332 221 222222222111
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++...++...+.. .|.. + +.... .....+|||+.|+..+||+++.+ |
T Consensus 155 --~~~~~~~~~~~~~~l~~~i~~-lp~g--------l-~t~~~-~~g~~LSGGqrQRvaiARAL~~~------------p 209 (306)
T 3nh6_A 155 --AGNDEVEAAAQAAGIHDAIMA-FPEG--------Y-RTQVG-ERGLKLSGGEKQRVAIARTILKA------------P 209 (306)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHH-STTG--------G-GCEES-TTSBCCCHHHHHHHHHHHHHHHC------------C
T ss_pred --CCHHHHHHHHHHhCcHHHHHh-ccch--------h-hhHhc-CCcCCCCHHHHHHHHHHHHHHhC------------C
Confidence 112223333333333222110 0000 0 00000 11124679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~~ 580 (604)
++|||||| |++||+.+...+.+. ..+. .+.|||+||||+..+...++ -.+|...+
T Consensus 210 ~iLlLDEP-ts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 210 GIILLDEA-TSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVNADQILVIKDGCIVE 268 (306)
T ss_dssp SEEEEECC-SSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHTCSEEEEEETTEEEE
T ss_pred CEEEEECC-cccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHcCCEEEEEECCEEEE
Confidence 99999999 999999998888877 3443 37899999999999876543 34555544
No 36
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.76 E-value=4.8e-19 Score=186.61 Aligned_cols=146 Identities=26% Similarity=0.316 Sum_probs=105.8
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhh--ccCCCcEEEEEeCCCCCCHHh---HHHHHHHHHhhCCCceEEE
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVT--GTLGKDMILVMNKIDLAPAPL---VLAWKHYFQSKFPKLTILC 263 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~--~~~~K~~ILVlNK~DLv~~~~---~~~w~~yf~~~~p~~~vv~ 263 (604)
++++.+++++|+|++ |||+.|.++.+ .|++|+. +..++++||||||+||+++.. +..|..+|... ++.+++
T Consensus 122 ~~~~~i~anvD~v~i-v~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~--G~~v~~ 197 (358)
T 2rcn_A 122 DGVKPIAANIDQIVI-VSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI--GYRVLM 197 (358)
T ss_dssp --CEEEEECCCEEEE-EEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT--TCCEEE
T ss_pred hHHHHHHhcCCEEEE-EEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC--CCcEEE
Confidence 466778999999995 58899986554 6888985 235789999999999999865 66899999775 467888
Q ss_pred EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhh
Q psy3589 264 FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVE 343 (604)
Q Consensus 264 ~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~ 343 (604)
+||. ++.|+.+|...+
T Consensus 198 ~Sa~----------------------------~~~gl~~L~~~~------------------------------------ 213 (358)
T 2rcn_A 198 VSSH----------------------------TQDGLKPLEEAL------------------------------------ 213 (358)
T ss_dssp CBTT----------------------------TTBTHHHHHHHH------------------------------------
T ss_pred EecC----------------------------CCcCHHHHHHhc------------------------------------
Confidence 8876 345555543211
Q ss_pred hhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCC-ccccCcCcc-------cceeEEEEecCCeE
Q psy3589 344 VGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKV-VSVSRTPGH-------TKHFQTIFLTDNIR 415 (604)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~-~~~g~i~g~-------t~~~q~~~~~~~~~ 415 (604)
.+ ..++|+|+||||||||||+|+|... +.+|.+... +......++.+...
T Consensus 214 ---------------------~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~ 271 (358)
T 2rcn_A 214 ---------------------TG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD 271 (358)
T ss_dssp ---------------------TT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE
T ss_pred ---------------------CC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE
Confidence 01 2689999999999999999999998 888887532 33445566667778
Q ss_pred EecCCCccC
Q psy3589 416 LCDCPGLVF 424 (604)
Q Consensus 416 l~D~pGl~~ 424 (604)
++|+||+..
T Consensus 272 l~dtpgv~e 280 (358)
T 2rcn_A 272 VIDSPGVRE 280 (358)
T ss_dssp EEECHHHHT
T ss_pred ecCcccHHH
Confidence 889888753
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.76 E-value=6.7e-19 Score=178.52 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+.++ .|.+...+..+.... .... .++.+.|.+ ++. .....+..+...
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-~~~--tv~enl~~~~~~--- 119 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTIL-FNE--TIKYNILYGKLD--- 119 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCC-CSE--EHHHHHHTTCTT---
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcc-ccc--CHHHHHhccCCC---
Confidence 36999999999999999999999986 677654443321100 1112 233444433 221 222222222110
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..++..+++...+.- .|.. ++.. .......+|||+.++..+|++++.+ |
T Consensus 120 --~~~~~~~~~l~~~~l~~~~~~-l~~~---------~~~~-~~~~~~~LSgGqkqRv~lAraL~~~------------p 174 (260)
T 2ghi_A 120 --ATDEEVIKATKSAQLYDFIEA-LPKK---------WDTI-VGNKGMKLSGGERQRIAIARCLLKD------------P 174 (260)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHT-STTG---------GGCE-ESSSSBCCCHHHHHHHHHHHHHHHC------------C
T ss_pred --CCHHHHHHHHHHhCCHHHHHh-cccc---------cccc-ccCCcCcCCHHHHHHHHHHHHHHcC------------C
Confidence 111222333333333221100 0000 0000 0011234679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
++|||||| |++||+.....+.++ ..+.+ +.|||+||||+.++.... .-.+|...
T Consensus 175 ~lllLDEP-ts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 175 KIVIFDEA-TSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIV 232 (260)
T ss_dssp SEEEEECC-CCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEE
T ss_pred CEEEEECc-cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999999988887 55544 899999999999875443 23445443
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.75 E-value=2.4e-18 Score=171.21 Aligned_cols=168 Identities=14% Similarity=0.070 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCch
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPY 448 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~~ 448 (604)
.++|+|+||||||||+++|+|+.++..|.+...+ ...++.+.|.+ ++. .....+..+. .. ..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------~i~~v~q~~~~-~~~--tv~enl~~~~-~~-----~~ 97 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RISFCSQFSWI-MPG--TIKENIIFGV-SY-----DE 97 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------CEEEECSSCCC-CSB--CHHHHHHTTS-CC-----CH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------EEEEEecCCcc-cCC--CHHHHhhccC-Cc-----Ch
Confidence 6999999999999999999999999888764332 11233344433 222 2222222221 00 01
Q ss_pred HHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccc
Q psy3589 449 STVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSK 528 (604)
Q Consensus 449 ~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLL 528 (604)
..+..++....+...+... +... .. ........+|||+.++..+|++++.+ |+++||
T Consensus 98 ~~~~~~~~~~~l~~~~~~~-~~~~---------~~-~~~~~~~~LSgGqkqrv~lAral~~~------------p~lllL 154 (229)
T 2pze_A 98 YRYRSVIKACQLEEDISKF-AEKD---------NI-VLGEGGITLSGGQRARISLARAVYKD------------ADLYLL 154 (229)
T ss_dssp HHHHHHHHHTTCHHHHTTS-TTGG---------GS-CBCTTCTTSCHHHHHHHHHHHHHHSC------------CSEEEE
T ss_pred HHHHHHHHHhCcHHHHHhC-cccc---------cc-cccCCCCcCCHHHHHHHHHHHHHhcC------------CCEEEE
Confidence 1122222222222211100 0000 00 00001234679999999999999665 999999
Q ss_pred cCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 529 QEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 529 DEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
||| |++||+.+...+.+. ..+. .+.|||+||||++++.... ...+|...
T Consensus 155 DEP-ts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 155 DSP-FGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSY 208 (229)
T ss_dssp EST-TTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEE
T ss_pred ECc-ccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEE
Confidence 999 999999999999874 2232 3789999999998875443 23455443
No 39
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.75 E-value=9.1e-18 Score=178.59 Aligned_cols=149 Identities=28% Similarity=0.361 Sum_probs=117.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH----hHHHHHHHH-HhhC-CCceEEEEee
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP----LVLAWKHYF-QSKF-PKLTILCFTS 266 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~----~~~~w~~yf-~~~~-p~~~vv~~Sa 266 (604)
.+.+++|+||+|+|+++|.....+.|.+++. ++|+|+|+||+||++.. ....|...+ ...+ ....++++||
T Consensus 67 ~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~---~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA 143 (369)
T 3ec1_A 67 RIGESKALVVNIVDIFDFNGSFIPGLPRFAA---DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSA 143 (369)
T ss_dssp HHHHHCCEEEEEEETTCSGGGCCSSHHHHCT---TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBT
T ss_pred HhhccCcEEEEEEECCCCCCchhhHHHHHhC---CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEEC
Confidence 3448899999999999999888999988875 68999999999998763 456676543 4332 1136788888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhh
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGE 346 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 346 (604)
. ++.|+.+|++.+..+.
T Consensus 144 ~----------------------------~g~gi~~L~~~I~~~~----------------------------------- 160 (369)
T 3ec1_A 144 A----------------------------KGIGMAKVMEAINRYR----------------------------------- 160 (369)
T ss_dssp T----------------------------TTBTHHHHHHHHHHHH-----------------------------------
T ss_pred C----------------------------CCCCHHHHHHHHHhhc-----------------------------------
Confidence 6 5678888887765421
Q ss_pred hhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCC-----CCccccCcCcccceeEEEEecCCeEEecCCC
Q psy3589 347 TIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGR-----KVVSVSRTPGHTKHFQTIFLTDNIRLCDCPG 421 (604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~-----~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pG 421 (604)
...+++++|.+|+|||||+|+|+|. ....++..+|+|+....+.+...+.++||||
T Consensus 161 -------------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG 221 (369)
T 3ec1_A 161 -------------------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221 (369)
T ss_dssp -------------------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCS
T ss_pred -------------------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCC
Confidence 0136999999999999999999997 4667888999999988888888899999999
Q ss_pred ccCCC
Q psy3589 422 LVFPS 426 (604)
Q Consensus 422 l~~p~ 426 (604)
+..+.
T Consensus 222 ~~~~~ 226 (369)
T 3ec1_A 222 IINHH 226 (369)
T ss_dssp CCCCS
T ss_pred cCcHH
Confidence 97554
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=172.05 Aligned_cols=161 Identities=14% Similarity=0.059 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+||||||||+++|+|+.++..|.+...+. -.++.+.|.+ + . ......+..+. ...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~---------i~~v~Q~~~~-~-~-~tv~enl~~~~-~~~----- 93 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS---------VAYVPQQAWI-Q-N-DSLRENILFGC-QLE----- 93 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC---------EEEECSSCCC-C-S-EEHHHHHHTTS-CCC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE---------EEEEcCCCcC-C-C-cCHHHHhhCcc-ccC-----
Confidence 369999999999999999999999998886643321 1223333321 1 1 11112221111 000
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
......+...+.+...+... |... ... ..+....+|||+.++..+|++++.+ |++||
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~-~~~~--------~~~--~~~~~~~LSgGqkqRv~lAraL~~~------------p~lll 150 (237)
T 2cbz_A 94 EPYYRSVIQACALLPDLEIL-PSGD--------RTE--IGEKGVNLSGGQKQRVSLARAVYSN------------ADIYL 150 (237)
T ss_dssp TTHHHHHHHHTTCHHHHTTS-TTGG--------GSE--ESTTSBCCCHHHHHHHHHHHHHHHC------------CSEEE
T ss_pred HHHHHHHHHHHhhHHHHHhc-cccc--------ccc--ccCCCCCCCHHHHHHHHHHHHHhcC------------CCEEE
Confidence 01112222222221111000 0000 000 0111234679999999999999777 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhc--CCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEE--PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~--~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+.+...+.+. ..+. ..|.|||+||||++++..+
T Consensus 151 LDEP-ts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~ 195 (237)
T 2cbz_A 151 FDDP-LSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV 195 (237)
T ss_dssp EEST-TTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGS
T ss_pred EeCc-ccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhC
Confidence 9999 999999999988887 2101 2488999999999887543
No 41
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.74 E-value=3.3e-18 Score=190.24 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+||||||||+++|+|+.+++.|.+......+.. ..+. +...+ .......+...... .....
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~--~~q~------~~~~~--~~tv~~~l~~~~~~--~~~~~ 362 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY--KPQR------IFPNY--DGTVQQYLENASKD--ALSTS 362 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEE--ECSS------CCCCC--SSBHHHHHHHHCSS--TTCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEe--echh------ccccc--CCCHHHHHHHhhhh--ccchh
Confidence 3699999999999999999999999998887544332221 1111 10000 01111111110000 00001
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++... ..+...++|||+.|+..+|++|+.+ |++||
T Consensus 363 ~~~~~~~l~~~~l~~~----------------------~~~~~~~LSGGq~QRv~iAraL~~~------------p~lLl 408 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRL----------------------LESNVNDLSGGELQKLYIAATLAKE------------ADLYV 408 (538)
T ss_dssp SHHHHHTTTTTTGGGC----------------------TTSBGGGCCHHHHHHHHHHHHHHSC------------CSEEE
T ss_pred HHHHHHHHHHcCCHHH----------------------hcCChhhCCHHHHHHHHHHHHHHcC------------CCEEE
Confidence 1112222222222110 0122334689999999999999555 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |++||+.++..+.++ ..+. +.|.|||+||||++++..+
T Consensus 409 LDEP-T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~ 452 (538)
T 3ozx_A 409 LDQP-SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI 452 (538)
T ss_dssp EEST-TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred EeCC-ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 9999 999999999888887 4443 4689999999999999875
No 42
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.73 E-value=7.7e-18 Score=179.06 Aligned_cols=156 Identities=25% Similarity=0.383 Sum_probs=115.1
Q ss_pred HHHHHHHHHhh-hcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH----hHHHHHHHHHhhCCC--
Q psy3589 186 ETWRQLWRVLE-MSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP----LVLAWKHYFQSKFPK-- 258 (604)
Q Consensus 186 e~wRQlwrviE-~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~----~~~~w~~yf~~~~p~-- 258 (604)
+-++.+++.+. .+|+||+|+|+++|.....+.|.+++. ++|+|+|+||+||++.. ....|..++......
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVG---NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKP 133 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSS---SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhC---CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCc
Confidence 44555555555 555999999999988777888888765 68999999999998764 456786654333321
Q ss_pred ceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhh
Q psy3589 259 LTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEE 338 (604)
Q Consensus 259 ~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~ 338 (604)
..++++||. ++.|+++|++.+..+.
T Consensus 134 ~~v~~iSA~----------------------------~g~gi~~L~~~l~~~~--------------------------- 158 (368)
T 3h2y_A 134 EDVFLISAA----------------------------KGQGIAELADAIEYYR--------------------------- 158 (368)
T ss_dssp SEEEECCTT----------------------------TCTTHHHHHHHHHHHH---------------------------
T ss_pred ccEEEEeCC----------------------------CCcCHHHHHhhhhhhc---------------------------
Confidence 267888886 5678888887765421
Q ss_pred hhhhhhhhhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCC------CccccCcCcccceeEEEEecC
Q psy3589 339 DEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRK------VVSVSRTPGHTKHFQTIFLTD 412 (604)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~------~~~~g~i~g~t~~~q~~~~~~ 412 (604)
...+++++|.+|+|||||+|+|.|.. ...++..+|+|+....+.+..
T Consensus 159 ---------------------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~ 211 (368)
T 3h2y_A 159 ---------------------------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE 211 (368)
T ss_dssp ---------------------------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS
T ss_pred ---------------------------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC
Confidence 01369999999999999999999863 445788899999988888877
Q ss_pred CeEEecCCCccCCC
Q psy3589 413 NIRLCDCPGLVFPS 426 (604)
Q Consensus 413 ~~~l~D~pGl~~p~ 426 (604)
.+.++||||+..+.
T Consensus 212 ~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 212 ESSLYDTPGIINHH 225 (368)
T ss_dssp SCEEEECCCBCCTT
T ss_pred CeEEEeCCCcCcHH
Confidence 89999999997654
No 43
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.73 E-value=1.3e-17 Score=172.74 Aligned_cols=140 Identities=19% Similarity=0.320 Sum_probs=103.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhc--cCCCcEEEEEeCCCCCCHHh---HHHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTG--TLGKDMILVMNKIDLAPAPL---VLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~---~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
.+..+|+||+|+|+++|.+++. .+.+|+.. ..++|+|||+||+||+++.. ...|.+++... ++.++++||.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~--g~~~~~~SA~- 151 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA--GYDVLKVSAK- 151 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT--TCEEEECCTT-
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC--CCeEEEEECC-
Confidence 5889999999999999974433 46666642 35799999999999998752 67788888765 4678888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhh
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETI 348 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 348 (604)
++.|+++|.+.+.
T Consensus 152 ---------------------------~g~gi~~L~~~l~---------------------------------------- 164 (302)
T 2yv5_A 152 ---------------------------TGEGIDELVDYLE---------------------------------------- 164 (302)
T ss_dssp ---------------------------TCTTHHHHHHHTT----------------------------------------
T ss_pred ---------------------------CCCCHHHHHhhcc----------------------------------------
Confidence 4567776654321
Q ss_pred hhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc---ccce----eEEEEecCCeEEecCCC
Q psy3589 349 ELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG---HTKH----FQTIFLTDNIRLCDCPG 421 (604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g---~t~~----~q~~~~~~~~~l~D~pG 421 (604)
+ ..++|+|+||||||||||+|+ ...+.+|.+.. .+++ ...+......+++|+||
T Consensus 165 -----------------G-~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg 225 (302)
T 2yv5_A 165 -----------------G-FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225 (302)
T ss_dssp -----------------T-CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCC
T ss_pred -----------------C-cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcC
Confidence 1 368999999999999999999 99999999876 3333 23334445678999999
Q ss_pred cc
Q psy3589 422 LV 423 (604)
Q Consensus 422 l~ 423 (604)
+.
T Consensus 226 ~~ 227 (302)
T 2yv5_A 226 FS 227 (302)
T ss_dssp CS
T ss_pred cC
Confidence 86
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.72 E-value=7e-18 Score=173.52 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.++|+|+|||||||||++|+|+.+++.|.+...+. ..++.+.+.+ ++. .....+. +. .. .
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~---------i~~v~Q~~~l-~~~--tv~enl~-~~-~~-----~ 125 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR---------ISFCSQNSWI-MPG--TIKENII-GV-SY-----D 125 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC---------EEEECSSCCC-CSS--BHHHHHH-TT-CC-----C
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE---------EEEEeCCCcc-Ccc--cHHHHhh-Cc-cc-----c
Confidence 368999999999999999999999998887644331 1233333333 222 2222222 21 10 0
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++...++...+.. .+.... ..+. .....+|||+.++..+|++++.+ |++||
T Consensus 126 ~~~~~~~~~~~~l~~~l~~-~~~~~~--------~~~~--~~~~~LSgGq~QRv~lAraL~~~------------p~lll 182 (290)
T 2bbs_A 126 EYRYRSVIKACQLEEDISK-FAEKDN--------IVLG--EGGITLSGGQRARISLARAVYKD------------ADLYL 182 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHT-STTGGG--------CBC------CCCCHHHHHHHHHHHHHHSC------------CSEEE
T ss_pred hHHHHHHHHHhChHHHHHh-cccccc--------chhc--CccCcCCHHHHHHHHHHHHHHCC------------CCEEE
Confidence 1111222222222211100 000000 0000 01124679999999999999665 99999
Q ss_pred ccCCCcCCCCHHHHHHHHHh--hhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 528 KQEYWEKHPDIDEILWIQAR--TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~--~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
|||| |++||+..+..+.++ ..+. .+.|||+||||++++.... ...+|...
T Consensus 183 LDEP-ts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 183 LDSP-FGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSY 237 (290)
T ss_dssp EEST-TTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred EECC-cccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEE
Confidence 9999 999999999999875 2232 4889999999998875443 23445443
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.72 E-value=3.5e-18 Score=190.02 Aligned_cols=67 Identities=13% Similarity=0.035 Sum_probs=59.0
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
..++|||+.|+..+|++++.+ |++|||||| |++||+..+..+.++ ..+.+ |.|||+||||++++.
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~------------p~illlDEP-ts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~ 201 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLRE------------ADVYIFDQP-SSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLD 201 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSC------------CSEEEEEST-TTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHcC------------CCEEEEECC-cccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHH
Confidence 445789999999999999555 999999999 999999999998888 55655 899999999999987
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 202 ~~ 203 (538)
T 3ozx_A 202 YL 203 (538)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=3.2e-18 Score=190.60 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=59.1
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
..++|||+.++..+|++++.+ |++|||||| |++||+..+..+.++ ..+.+.|+|||+||||++++.
T Consensus 156 ~~~LSgGekQRv~iAraL~~~------------P~lLlLDEP-Ts~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~ 222 (538)
T 1yqt_A 156 IQHLSGGELQRVAIAAALLRN------------ATFYFFDEP-SSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLD 222 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSC------------CSEEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhcC------------CCEEEEECC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 345789999999999999555 999999999 999999999888887 455556999999999999987
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 223 ~~ 224 (538)
T 1yqt_A 223 YL 224 (538)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.72 E-value=4.1e-18 Score=191.92 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=59.0
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
..++|||+.++..+|++|+.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++.
T Consensus 226 ~~~LSGGekQRvaIAraL~~~------------P~lLlLDEP-Ts~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~ 292 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRK------------AHFYFFDEP-SSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 292 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSC------------CSEEEEECT-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhcC------------CCEEEEECC-cccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHH
Confidence 345789999999999999655 999999999 999999998888887 555556899999999999987
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 293 ~~ 294 (607)
T 3bk7_A 293 YL 294 (607)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.71 E-value=5.8e-18 Score=190.69 Aligned_cols=154 Identities=15% Similarity=0.112 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+|||||||||++|+|+.+++.|.+... .. . .++.+.+...+.. ... ..+... ...... .
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~--i------~~v~Q~~~~~~~~--tv~-e~~~~~-~~~~~~-~ 448 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LT--V------AYKPQYIKAEYEG--TVY-ELLSKI-DSSKLN-S 448 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CC--E------EEECSSCCCCCSS--BHH-HHHHHH-HHHHHH-C
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eE--E------EEEecCccCCCCC--cHH-HHHHhh-hccCCC-H
Confidence 3699999999999999999999999988887531 11 1 1222222211111 111 111100 000000 0
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++... ..+...++|||+.++..+|++|+ .+|++||
T Consensus 449 ~~~~~~~l~~~~l~~~----------------------~~~~~~~LSGGe~QRv~iAraL~------------~~p~lLl 494 (607)
T 3bk7_A 449 NFYKTELLKPLGIIDL----------------------YDRNVEDLSGGELQRVAIAATLL------------RDADIYL 494 (607)
T ss_dssp HHHHHHTHHHHTCTTT----------------------TTSBGGGCCHHHHHHHHHHHHHT------------SCCSEEE
T ss_pred HHHHHHHHHHcCCchH----------------------hcCChhhCCHHHHHHHHHHHHHH------------hCCCEEE
Confidence 0111112222111000 01233457899999999999994 4599999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |+|||+.++..+.++ ..+. +.|.|||+||||++++..+
T Consensus 495 LDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 495 LDEP-SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp EECT-TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred EeCC-ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 9999 999999999988888 4443 4689999999999999876
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.71 E-value=5.9e-18 Score=188.45 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREP 447 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~ 447 (604)
-.+||+|+||||||||+++|+|+.++..|.+... .. . .++.+.+...+.. ... ..+... ..... ..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~--i------~~v~Q~~~~~~~~--tv~-~~~~~~-~~~~~-~~ 378 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LT--V------AYKPQYIKADYEG--TVY-ELLSKI-DASKL-NS 378 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CC--E------EEECSSCCCCCSS--BHH-HHHHHH-HHHHH-TC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ce--E------EEEecCCcCCCCC--cHH-HHHHhh-hccCC-CH
Confidence 4699999999999999999999999988887531 11 1 1122222111111 111 111100 00000 00
Q ss_pred hHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCccc
Q psy3589 448 YSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLS 527 (604)
Q Consensus 448 ~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLL 527 (604)
...+..++..+++.. . ..+...++|||+.++..+|+++ +.+|++||
T Consensus 379 ~~~~~~~l~~~~l~~--------------------~--~~~~~~~LSGGe~qrv~lAraL------------~~~p~lLl 424 (538)
T 1yqt_A 379 NFYKTELLKPLGIID--------------------L--YDREVNELSGGELQRVAIAATL------------LRDADIYL 424 (538)
T ss_dssp HHHHHHTTTTTTCGG--------------------G--TTSBGGGCCHHHHHHHHHHHHH------------TSCCSEEE
T ss_pred HHHHHHHHHHcCChh--------------------h--hcCChhhCCHHHHHHHHHHHHH------------HhCCCEEE
Confidence 011111111111110 0 1123345789999999999999 44599999
Q ss_pred ccCCCcCCCCHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 528 KQEYWEKHPDIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 528 LDEP~T~~LD~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
|||| |+|||+.++..+.++ ..+. +.|.|||+||||++++..+
T Consensus 425 LDEP-t~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 425 LDEP-SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp EECT-TTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred EeCC-cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 9999 999999999998888 4443 4589999999999999876
No 50
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.71 E-value=1.9e-18 Score=184.48 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.++|+|||||||||||++|+|+.. +.|.+...++.+..... ... .++.+.+.+ |+. .....+ . .+.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~l-f~~--tv~enl-~-~~~--- 118 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFI-FSG--TFRKNL-D-PNA--- 118 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCC-CSE--EHHHHH-C-TTC---
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCccc-Ccc--CHHHHh-h-hcc---
Confidence 3699999999999999999999987 77877554443221110 011 233333332 221 111111 1 000
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+..++..+++..++... |... +.. ...+...+||||.|+..+||+|+.+ |
T Consensus 119 -~~~~~~v~~~l~~~~L~~~~~~~-p~~l---------~~~-i~~~g~~LSGGqrQRvalARAL~~~------------P 174 (390)
T 3gd7_A 119 -AHSDQEIWKVADEVGLRSVIEQF-PGKL---------DFV-LVDGGCVLSHGHKQLMCLARSVLSK------------A 174 (390)
T ss_dssp -CSCHHHHHHHHHHTTCHHHHTTS-TTGG---------GCE-ECTTTTTSCHHHHHHHHHHHHHHTT------------C
T ss_pred -ccCHHHHHHHHHHhCCHHHHhhc-cccc---------ccc-cccccccCCHHHHHHHHHHHHHhcC------------C
Confidence 11123344455555544332110 1000 000 0001112679999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||||| |++||+..+..+... ..+ ..+.|+|+||||++.+...
T Consensus 175 ~lLLLDEP-ts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~~~a 220 (390)
T 3gd7_A 175 KILLLDEP-SAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAMLEC 220 (390)
T ss_dssp CEEEEESH-HHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGGTTC
T ss_pred CEEEEeCC-ccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHHHhC
Confidence 99999999 999999999888887 333 2478999999998765443
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.3e-18 Score=190.79 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=60.1
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
..++|||+.|+..+|++++.+ |++|||||| |++||+.++..+.++ ..+.+.|.|||+||||++++.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~------------p~llllDEP-ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQE------------ADVYMFDEP-SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLD 285 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSC------------CSEEEEECT-TTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHH
T ss_pred hHHCCHHHHHHHHHHHHHHhC------------CCEEEEECc-ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 345789999999999999555 999999999 999999999888887 666677999999999999998
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
.+
T Consensus 286 ~~ 287 (608)
T 3j16_B 286 YL 287 (608)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.6e-17 Score=186.87 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccCCCCCChhhhHhhcccccccccCch
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPY 448 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~l~~~~ 448 (604)
.+||+|+||||||||+++|+|+.+++.|.... ... .. ++.+.+...++. .....+...... . ....
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~-~~~--i~------~~~q~~~~~~~~--tv~e~~~~~~~~--~-~~~~ 445 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIP-KLN--VS------MKPQKIAPKFPG--TVRQLFFKKIRG--Q-FLNP 445 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCC-SCC--EE------EECSSCCCCCCS--BHHHHHHHHCSS--T-TTSH
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCcc-CCc--EE------EecccccccCCc--cHHHHHHHHhhc--c-cccH
Confidence 58999999999999999999999998875311 111 11 111111212211 111111111100 0 0011
Q ss_pred HHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccc
Q psy3589 449 STVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSK 528 (604)
Q Consensus 449 ~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLL 528 (604)
..+..++..+++... ..+...++|||+.|+..+|++| +.+|++|||
T Consensus 446 ~~~~~~l~~l~l~~~----------------------~~~~~~~LSGGqkQRv~iAraL------------~~~p~lLlL 491 (608)
T 3j16_B 446 QFQTDVVKPLRIDDI----------------------IDQEVQHLSGGELQRVAIVLAL------------GIPADIYLI 491 (608)
T ss_dssp HHHHHTHHHHTSTTT----------------------SSSBSSSCCHHHHHHHHHHHHT------------TSCCSEEEE
T ss_pred HHHHHHHHHcCChhh----------------------hcCChhhCCHHHHHHHHHHHHH------------HhCCCEEEE
Confidence 112222222222110 0122234679999999999999 455999999
Q ss_pred cCCCcCCCCHHHHHHHHHh-hhh-cCCCCeEEEEecChhhhhhh
Q psy3589 529 QEYWEKHPDIDEILWIQAR-TKE-EPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 529 DEP~T~~LD~~~~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~~~ 570 (604)
||| |++||+.++..+.++ ..+ .+.|.|||+||||++++..+
T Consensus 492 DEP-T~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 492 DEP-SAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp CCT-TTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred ECC-CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 999 999999998888877 444 34689999999999999876
No 53
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.69 E-value=2.9e-17 Score=184.84 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+..|+.|.+...+.++.... +... .++.+.|.+ |+. +....+..+..+ .
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l-~~~--tv~eni~~~~~~--~ 444 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL-FND--TIANNIAYAAEG--E 444 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcc-ccc--cHHHHHhccCCC--C
Confidence 469999999999999999999999999998866554432211 1112 233344433 222 222222222111 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..+++..++...+.. .|.. +..... .+| ..+||||.|+..+||+++++ |
T Consensus 445 --~~~~~~~~~~~~~~l~~~~~~-~p~g--------~~t~~~-~~~-~~LSgGq~qr~~iAral~~~------------p 499 (582)
T 3b5x_A 445 --YTREQIEQAARQAHAMEFIEN-MPQG--------LDTVIG-ENG-TSLSGGQRQRVAIARALLRD------------A 499 (582)
T ss_pred --CCHHHHHHHHHHCCCHHHHHh-Cccc--------ccchhc-CCC-CcCCHHHHHHHHHHHHHHcC------------C
Confidence 112344555555555443211 1110 000111 112 24679999999999999776 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh---hhccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~~ 580 (604)
+++||||| |++||+.+...+.+. ..+.+ |.|+|+||||+..+...+ .-.+|...+
T Consensus 500 ~illlDEp-ts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 500 PVLILDEA-TSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIE 558 (582)
T ss_pred CEEEEECc-cccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999 999999999888887 44443 899999999999876554 335555543
No 54
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=1e-16 Score=165.78 Aligned_cols=143 Identities=21% Similarity=0.256 Sum_probs=97.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhc--cCCCcEEEEEeCCCCCCHHh---HHHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTG--TLGKDMILVMNKIDLAPAPL---VLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~---~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
.+..+|++|+|+|+++|..++ ..+..++.. ..++|+|||+||+||.+... ...|.+++... ..++.+||+
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~---~~~~~~SAk- 155 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL---YPIVKTSAK- 155 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT---SCEEECCTT-
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh---CcEEEEECC-
Confidence 478899999999999987443 345555532 35789999999999998754 45677766533 467788886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhh
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETI 348 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 348 (604)
++.|+++++..+.
T Consensus 156 ---------------------------tg~gv~~lf~~l~---------------------------------------- 168 (301)
T 1u0l_A 156 ---------------------------TGMGIEELKEYLK---------------------------------------- 168 (301)
T ss_dssp ---------------------------TCTTHHHHHHHHS----------------------------------------
T ss_pred ---------------------------CCcCHHHHHHHhc----------------------------------------
Confidence 4567766654321
Q ss_pred hhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc---ccce----eEEEEecCCeEEecCCC
Q psy3589 349 ELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG---HTKH----FQTIFLTDNIRLCDCPG 421 (604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g---~t~~----~q~~~~~~~~~l~D~pG 421 (604)
+ ..++|+|+||||||||||+|+|+..+.+|.+.. .+++ ...+......+++|+||
T Consensus 169 -----------------g-eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 169 -----------------G-KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp -----------------S-SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred -----------------C-CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 1 258999999999999999999999999998876 3332 23333445678899999
Q ss_pred ccCCC
Q psy3589 422 LVFPS 426 (604)
Q Consensus 422 l~~p~ 426 (604)
+....
T Consensus 231 ~~~~~ 235 (301)
T 1u0l_A 231 FANLE 235 (301)
T ss_dssp STTCC
T ss_pred CCccC
Confidence 75443
No 55
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.67 E-value=5.9e-17 Score=182.37 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+..|+.|.+...+.++.... +... .++.+.|.+ |+. +....+..+..+ .
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l-~~~--tv~eni~~~~~~--~ 444 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHL-FND--TVANNIAYARTE--E 444 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCC-CSS--BHHHHHHTTTTS--C
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcC-CCC--CHHHHHhccCCC--C
Confidence 479999999999999999999999999888765544332110 0112 233444433 222 222223222111 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+..+++.+++...+.- .|..-. .... .+ ...+||||.|+..+||+++++ |
T Consensus 445 --~~~~~~~~~l~~~~l~~~~~~-~p~g~~--------~~~~-~~-~~~LSgGq~qrl~iAral~~~------------p 499 (582)
T 3b60_A 445 --YSREQIEEAARMAYAMDFINK-MDNGLD--------TIIG-EN-GVLLSGGQRQRIAIARALLRD------------S 499 (582)
T ss_dssp --CCHHHHHHHHHTTTCHHHHHH-STTGGG--------SBCC-TT-SCSSCHHHHHHHHHHHHHHHC------------C
T ss_pred --CCHHHHHHHHHHcCCHHHHHh-cccccc--------cccc-CC-CCCCCHHHHHHHHHHHHHHhC------------C
Confidence 112334455555544332211 010000 0000 11 124679999999999999877 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh---hhccCCCc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK---RKHKGEET 579 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~---~~~~~~~~ 579 (604)
+++||||| |++||+.+...+.+. ..+.+ |.|+|+||||+..+...+ .-.+|...
T Consensus 500 ~illlDEp-ts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 500 PILILDEA-TSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIV 557 (582)
T ss_dssp SEEEEETT-TSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred CEEEEECc-cccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999998888887 44444 899999999999876544 33455544
No 56
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.67 E-value=3.7e-17 Score=184.50 Aligned_cols=181 Identities=16% Similarity=0.193 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+..|+.|.+...+.++.... +...+ ++.+.|.+ |+. +....+..+. +..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l-~~~--tv~eni~~~~-~~~- 445 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL-FSC--SIAENIAYGA-DDP- 445 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCC-CSS--BHHHHHHTTS-SST-
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcc-cCC--CHHHHHhhcC-CCc-
Confidence 469999999999999999999999999888765544332110 01122 33344433 222 2222332221 100
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHh--cchhhhccCcccHHHHHHHHHHhhccceeeeecC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQK--RSYMTAKTGRYDSYRAANELLRMATEGRICLCLM 521 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~--rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~ 521 (604)
.......+..+++.+++...+.- .|.. +... .+-..+||||.|+..+||+++++
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~-l~~g------------~~~~~~~~~~~LSgGq~qrv~iAral~~~----------- 501 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRN-FPQG------------FNTVVGEKGVLLSGGQKQRIAIARALLKN----------- 501 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHT-SSSG------------GGCBCSSSSCCCCHHHHHHHHHHHHHHHC-----------
T ss_pred cccCHHHHHHHHHHcCCHHHHHh-Cccc------------ccccccCCCCcCCHHHHHHHHHHHHHHcC-----------
Confidence 00122344555555554433210 0100 0000 01124679999999999999877
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCcc
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEETE 580 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~~ 580 (604)
|+++||||| |++||+.+...+.+. ..+.+ +.|+|+||||+..+...++ -.+|...+
T Consensus 502 -p~illlDEp-ts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 502 -PKILLLDEA-TSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITE 561 (595)
T ss_dssp -CSEEEEECC-CSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred -CCEEEEECc-ccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999 999999999888887 44444 7999999999998865543 34555443
No 57
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.66 E-value=3.6e-17 Score=184.00 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+||||||||||+++|+|+..|+.|.+...+.++.... +... .++.+.|.+ |+. +....+..+...
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l-~~~--tv~eni~~~~~~--- 441 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSD--TVKENILLGRPT--- 441 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC-CSS--BHHHHHGGGCSS---
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc-Ccc--cHHHHHhcCCCC---
Confidence 479999999999999999999999999988765554332111 0112 233344433 222 222233322110
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+...++...+.. .|.... .... .+| ..+||||.|+..+||+++++ |
T Consensus 442 --~~~~~~~~~~~~~~~~~~~~~-lp~g~~--------t~~~-~~g-~~LSgGq~Qrv~lAral~~~------------p 496 (578)
T 4a82_A 442 --ATDEEVVEAAKMANAHDFIMN-LPQGYD--------TEVG-ERG-VKLSGGQKQRLSIARIFLNN------------P 496 (578)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHT-STTGGG--------CBCC-GGG-TTSCHHHHHHHHHHHHHHHC------------C
T ss_pred --CCHHHHHHHHHHhCcHHHHHh-Ccchhh--------hhhc-cCC-CcCCHHHHHHHHHHHHHHcC------------C
Confidence 112233344444443322210 111000 0000 111 24679999999999999877 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhh---hccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKR---KHKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~---~~~~~~~~ 580 (604)
+++||||| |++||+.+...+.+. ..+. .++|+|+||||+..+...++ -++|...+
T Consensus 497 ~illlDEp-ts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 497 PILILDEA-TSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp SEEEEEST-TTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred CEEEEECc-cccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999 999999998888877 3443 47899999999998876543 34555544
No 58
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.64 E-value=3.5e-17 Score=184.77 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+..++.|.+...+.++..... ... .++.+.|.+ |+. +....+..+....
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~--tv~eni~~~~~~~-- 456 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL-FST--TVKENLKYGNPGA-- 456 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCC-CSS--BHHHHHHSSSTTC--
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcc-ccc--cHHHHHhcCCCCC--
Confidence 4799999999999999999999999999887655543321110 111 233333432 222 2222222221100
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
....+...+...++...+.. .|.... ..... +| ..+||||.|+..+||+++++ |
T Consensus 457 ---~~~~~~~~~~~~~~~~~~~~-~~~g~~--------t~~~~-~g-~~LSgGq~Qrv~iAral~~~------------p 510 (598)
T 3qf4_B 457 ---TDEEIKEAAKLTHSDHFIKH-LPEGYE--------TVLTD-NG-EDLSQGQRQLLAITRAFLAN------------P 510 (598)
T ss_dssp ---CTTHHHHHTTTTTCHHHHHT-STTGGG--------CBCHH-HH-TTSCHHHHHHHHHHHHHHTC------------C
T ss_pred ---CHHHHHHHHHHhCCHHHHHh-cccccc--------chhcC-CC-CCCCHHHHHHHHHHHHHhcC------------C
Confidence 11122333333333222110 111000 00001 11 23679999999999999776 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
++|||||| |++||+.+...+.+. ..+. .|.|+|+|||++..+...+++ .+|...+
T Consensus 511 ~illlDEp-ts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 511 KILILDEA-TSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569 (598)
T ss_dssp SEEEECCC-CTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEE
T ss_pred CEEEEECC-ccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999 999999998888877 4443 489999999999998776543 4565544
No 59
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.64 E-value=6.3e-16 Score=168.15 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=111.5
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
.+.+|....++.||+||+|+|++.++...+..+..++. ..++|+|||+||+|+........|.+++...+ ..++++|
T Consensus 70 ~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~-~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~--~~~~~iS 146 (439)
T 1mky_A 70 KMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLR-KSTVDTILVANKAENLREFEREVKPELYSLGF--GEPIPVS 146 (439)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHH-HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSS--CSCEECB
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH-HcCCCEEEEEeCCCCccccHHHHHHHHHhcCC--CCEEEEe
Confidence 45677788899999999999999988766666777775 34799999999999864312233344443222 2567888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
|. ++.|+.+|++.+...++... .+. .
T Consensus 147 A~----------------------------~g~gv~~L~~~i~~~l~~~~----------------~~~--~-------- 172 (439)
T 1mky_A 147 AE----------------------------HNINLDTMLETIIKKLEEKG----------------LDL--E-------- 172 (439)
T ss_dssp TT----------------------------TTBSHHHHHHHHHHHHHHTT----------------CCS--S--------
T ss_pred cc----------------------------CCCCHHHHHHHHHHhccccc----------------ccc--h--------
Confidence 86 67788899888765432100 000 0
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEec-CCeEEecCCCc
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLT-DNIRLCDCPGL 422 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~-~~~~l~D~pGl 422 (604)
......+.++++|||+||||||||+|.|+|.....++.++|+|.+.. .+.+. ..+.++|+||+
T Consensus 173 --------------~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~ 238 (439)
T 1mky_A 173 --------------SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238 (439)
T ss_dssp --------------SCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred --------------hccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCC
Confidence 00001245899999999999999999999998877888898887643 23333 34678899997
Q ss_pred c
Q psy3589 423 V 423 (604)
Q Consensus 423 ~ 423 (604)
.
T Consensus 239 ~ 239 (439)
T 1mky_A 239 R 239 (439)
T ss_dssp -
T ss_pred c
Confidence 4
No 60
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.64 E-value=1.3e-16 Score=179.57 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-.+||+|+||||||||+++|+|+..++.|.+...+.++..+.. ... .++.+.|.+ |+. +....+..+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~--tv~eni~~~~~---- 442 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL-FSG--TIKENLKWGRE---- 442 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC-CSE--EHHHHHTTTCS----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC-cCc--cHHHHHhccCC----
Confidence 4799999999999999999999999998887655544322110 111 223333332 221 11222222210
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...+....+...+.. .|... +.....+ -..+||||.|+..+||+++++ |
T Consensus 443 -~~~~~~~~~~~~~~~~~~~i~~-l~~g~---------~~~~~~~-~~~LSgGqrQrv~lARal~~~------------p 498 (587)
T 3qf4_A 443 -DATDDEIVEAAKIAQIHDFIIS-LPEGY---------DSRVERG-GRNFSGGQKQRLSIARALVKK------------P 498 (587)
T ss_dssp -SCCHHHHHHHHHHTTCHHHHHT-SSSGG---------GCEECSS-SCSSCHHHHHHHHHHHHHHTC------------C
T ss_pred -CCCHHHHHHHHHHhCcHHHHHh-cccch---------hhHhcCC-CCCcCHHHHHHHHHHHHHHcC------------C
Confidence 0111223333333333222210 01000 0000011 123679999999999999776 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
++|||||| |++||+.+...+.+. ..+. .++|+|+||||+..+...+++ .+|...+
T Consensus 499 ~illlDEp-ts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 499 KVLILDDC-TSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLHEGKVAG 557 (587)
T ss_dssp SEEEEESC-CTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEE
T ss_pred CEEEEECC-cccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 99999999 999999998888887 4443 489999999999988755433 4565544
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.61 E-value=1.6e-15 Score=177.06 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=58.5
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..++|||+.++..+|++++.+ |++|||||| |+|||+.++.+|.++ +...|.||||||||++++..
T Consensus 546 ~~~LSGGqkQRvaLArAL~~~------------P~lLLLDEP-Ts~LD~~~~~~l~~~--L~~~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 546 ISALSGGWKMKLALARAVLRN------------ADILLLDEP-TNHLDTVNVAWLVNY--LNTCGITSITISHDSVFLDN 610 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHHTT------------CSEEEEEST-TTTCCHHHHHHHHHH--HHHSCSEEEEECSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhcC------------CCEEEEECC-ccCCCHHHHHHHHHH--HHhCCCEEEEEECCHHHHHH
Confidence 335679999999999999666 999999999 999999999999998 44468999999999999877
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 611 ~ 611 (986)
T 2iw3_A 611 V 611 (986)
T ss_dssp H
T ss_pred h
Confidence 5
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.59 E-value=2e-16 Score=180.98 Aligned_cols=71 Identities=14% Similarity=-0.012 Sum_probs=60.5
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCC--cccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQ--YLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~--lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
.-++|||+.++..+|++|+.+ |+ +|||||| |++||+..+.+|.++ ..+++.|.|||+||||+++
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~------------p~~~lLlLDEP-tsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSR------------LTGVLYVLDEP-SIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTC------------CCSCEEEEECT-TTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred cccCCHHHHHHHHHHHHHhhC------------CCCCEEEEECC-ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 445789999999999999655 77 9999999 999999999999888 5666679999999999998
Q ss_pred hhhhhhh
Q psy3589 567 GKNVKRK 573 (604)
Q Consensus 567 ~~~~~~~ 573 (604)
+..+.+.
T Consensus 267 ~~~~d~i 273 (670)
T 3ux8_A 267 MLAADYL 273 (670)
T ss_dssp HHHCSEE
T ss_pred HhhCCEE
Confidence 7665444
No 63
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=1.8e-15 Score=164.43 Aligned_cols=162 Identities=23% Similarity=0.319 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
++.+|....++.+|+||+|+|+++++...+..+.+++. ..++|+|||+||+|+.+.. ..+.+++...+ ..++++|
T Consensus 71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~-~~~~pvilv~NK~D~~~~~--~~~~~~~~lg~--~~~~~iS 145 (436)
T 2hjg_A 71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY-RTKKPVVLAVNKLDNTEMR--ANIYDFYSLGF--GEPYPIS 145 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHT-TCCSCEEEEEECCCC-------CCCSSGGGSS--CCCEECB
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCCEEEEEECccCccch--hhHHHHHHcCC--CCeEEEe
Confidence 45566777899999999999999998776667777775 4689999999999997643 12223332222 2567788
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
|. ++.|+.+|++.+...++... +.
T Consensus 146 A~----------------------------~g~gv~~L~~~i~~~l~~~~-----------------~~----------- 169 (436)
T 2hjg_A 146 GT----------------------------HGLGLGDLLDAVAEHFKNIP-----------------ET----------- 169 (436)
T ss_dssp TT----------------------------TTBTHHHHHHHHHHTGGGCC-----------------SS-----------
T ss_pred Cc----------------------------CCCChHHHHHHHHHhcCccc-----------------cc-----------
Confidence 76 67789999988766432110 00
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEe-cCCeEEecCCCc
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFL-TDNIRLCDCPGL 422 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~-~~~~~l~D~pGl 422 (604)
......++|+|||.+|||||||+|.|+|.....++.++|+|.+... +.. ...+.++||||+
T Consensus 170 ----------------~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 170 ----------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 233 (436)
T ss_dssp ----------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred ----------------cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence 0113458999999999999999999999887767888888876532 222 235789999998
Q ss_pred cC
Q psy3589 423 VF 424 (604)
Q Consensus 423 ~~ 424 (604)
..
T Consensus 234 ~~ 235 (436)
T 2hjg_A 234 RK 235 (436)
T ss_dssp TC
T ss_pred Cc
Confidence 53
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.57 E-value=1.6e-15 Score=177.11 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=58.1
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
..++|||+.++..+|++++ .+|++|||||| |++||+.+...+.+. +.+.++||||||||++++..
T Consensus 899 ~~~LSGGQkQRVaLArAL~------------~~P~LLLLDEP-T~gLD~~s~~~L~~~--L~~~g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTW------------QRPHLIVLDEP-TNYLDRDSLGALSKA--LKEFEGGVIIITHSAEFTKN 963 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHT------------TCCSEEEEECG-GGTCCHHHHHHHHHH--HHSCSSEEEEECSCHHHHTT
T ss_pred ccccCHHHHHHHHHHHHHH------------hCCCEEEEECC-ccCCCHHHHHHHHHH--HHHhCCEEEEEECCHHHHHH
Confidence 3457799999999999994 45999999999 999999999999988 77778899999999999876
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
+
T Consensus 964 l 964 (986)
T 2iw3_A 964 L 964 (986)
T ss_dssp T
T ss_pred h
Confidence 5
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.56 E-value=1.4e-15 Score=185.08 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCC-eEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDN-IRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~-~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-++||||+||||||||+++|+|+..+..|.+...+.++.... +... .++.+.|- .|.. +....+..+.. ..
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~--ti~eNi~~~~~-~~- 1134 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI-LFDC--SIAENIAYGDN-SR- 1134 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC-CCSS--BHHHHHTCCCS-SC-
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc-cccc--cHHHHHhccCC-CC-
Confidence 479999999999999999999999999998865554432211 1122 23334442 2221 12222222211 00
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...+...++...+.- .|.... .... .+| ..+||||.|+..+||+++++ |
T Consensus 1135 -~~~~~~i~~~~~~~~~~~~i~~-l~~gld--------t~vg-e~G-~~LSgGq~Qrv~iARal~~~------------p 1190 (1284)
T 3g5u_A 1135 -VVSYEEIVRAAKEANIHQFIDS-LPDKYN--------TRVG-DKG-TQLSGGQKQRIAIARALVRQ------------P 1190 (1284)
T ss_dssp -CCCHHHHHHHHHHHTCHHHHSS-TTTGGG--------CBCS-TTS-CSSCHHHHHHHHHHHHHHHC------------C
T ss_pred -CCCHHHHHHHHHHhCcHHHHHh-Cccccc--------cccC-CCC-CccCHHHHHHHHHHHHHHcC------------C
Confidence 0112233334444333332210 111000 0000 111 23679999999999999887 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
++|||||| |++||+.+...+.+. ..+ ..|+|||+||||++++..++|+ .+|...+
T Consensus 1191 ~iLiLDEp-Ts~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1191 HILLLDEA-TSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp SSEEEESC-SSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CEEEEeCC-cccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999 999999998888887 333 3489999999999998766433 4454443
No 66
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.56 E-value=2e-15 Score=183.70 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCe-EEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNI-RLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~-~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-++||||+||||||||+++|+|++.+..|.+...+.++..+.. ...+ ++.+.|.+ |+. .....+..+...
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~--ti~eNi~~g~~~--- 490 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL-FAT--TIAENIRYGRED--- 490 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCC-CSS--CHHHHHHHHCSS---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCcc-CCc--cHHHHHhcCCCC---
Confidence 4799999999999999999999999998887655443321110 1112 23333432 222 222223323211
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
.....+...+....+...+.- .|... +.....+| ..+||||.|+..+||+++++ |
T Consensus 491 --~~~~~~~~~~~~~~~~~~i~~-l~~g~---------~t~~~~~g-~~LSgGq~QriaiARal~~~------------p 545 (1284)
T 3g5u_A 491 --VTMDEIEKAVKEANAYDFIMK-LPHQF---------DTLVGERG-AQLSGGQKQRIAIARALVRN------------P 545 (1284)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHH-STTGG---------GCCCSSSS-CSSCHHHHHHHHHHHHHHHC------------C
T ss_pred --CCHHHHHHHHHHhCcHHHHHh-ccccc---------cccccCCC-CccCHHHHHHHHHHHHHhcC------------C
Confidence 112233333443333221110 01000 00000112 24689999999999999887 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
++|||||| |++||..+...+.+. ..+ ..|+|+|+|||++..+...+
T Consensus 546 ~iliLDEp-ts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~i~~~d 592 (1284)
T 3g5u_A 546 KILLLDEA-TSALDTESEAVVQAALDKA-REGRTTIVIAHRLSTVRNAD 592 (1284)
T ss_dssp SEEEEEST-TCSSCHHHHHHHHHHHHHH-HTTSEEEEECSCHHHHTTCS
T ss_pred CEEEEECC-CCCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHcCC
Confidence 99999999 999999998888877 333 34899999999999987654
No 67
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.53 E-value=1.3e-15 Score=185.76 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=116.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE---ecCCeEEecCCCccCCCCCChhhhHhhccccccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF---LTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~---~~~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
.-+|||||++|||||||+++|.|++.|..|.+...+.++..+. +...+.++....+.|... ....+..|.-| .
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT--IreNI~~gld~-~- 1180 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS--IAENIIYGLDP-S- 1180 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE--HHHHHSSSSCT-T-
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc--HHHHHhccCCC-C-
Confidence 3589999999999999999999999999998876665544332 123333332222223221 11222222211 1
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...++..++...+.- .|..-.. ... .+|. .+||||.|+.++||+++++ |
T Consensus 1181 -~~sd~ei~~Al~~a~l~~~I~~-Lp~GldT--------~vg-e~G~-~LSgGQrQriaiARAllr~------------~ 1236 (1321)
T 4f4c_A 1181 -SVTMAQVEEAARLANIHNFIAE-LPEGFET--------RVG-DRGT-QLSGGQKQRIAIARALVRN------------P 1236 (1321)
T ss_dssp -TSCHHHHHHHHHHTTCHHHHHT-STTTTCS--------EET-TTSC-SSCHHHHHHHHHHHHHHSC------------C
T ss_pred -CCCHHHHHHHHHHhCChHHHHc-CcCCCCC--------Eec-CCCc-ccCHHHHHHHHHHHHHHhC------------C
Confidence 1123445566666665544321 1211000 000 1222 2679999999999999777 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHhhhhcC--CCCeEEEEecChhhhhhhhhh---ccCCCcc
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQARTKEEP--YKHPLVSVSDDEAEGKNVKRK---HKGEETE 580 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~~~l~~--~g~tVIiVTHD~~e~~~~~~~---~~~~~~~ 580 (604)
++|||||| |++||.++-..+++. +.+ .++|+|+|+|.+..+...+++ .+|...+
T Consensus 1237 ~ILiLDEa-TSaLD~~tE~~Iq~~--l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1237 KILLLDEA-TSALDTESEKVVQEA--LDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp SEEEEESC-CCSTTSHHHHHHHHH--HTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEE
T ss_pred CEEEEeCc-cccCCHHHHHHHHHH--HHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEE
Confidence 99999999 999999998888887 433 489999999999988777543 4555544
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.52 E-value=2.2e-15 Score=147.56 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=38.4
Q ss_pred CcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhhhhc
Q psy3589 496 GRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVKRKH 574 (604)
Q Consensus 496 G~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~~~~ 574 (604)
|+.++..+|+++ +.+|++|||||| |++ ++..+.++ ..+ ..|.||| ||||++++.......
T Consensus 108 Gq~qrv~lAraL------------~~~p~lllLDEP-ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~~~~~~ 168 (208)
T 3b85_A 108 VEVAPLAYMRGR------------TLNDAFVILDEA-QNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDLPGGQK 168 (208)
T ss_dssp EEEEEGGGGTTC------------CBCSEEEEECSG-GGC----CHHHHHHHHTTB-CTTCEEE-EEEC-----------
T ss_pred chHHHHHHHHHH------------hcCCCEEEEeCC-ccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhCcCCCC
Confidence 666666666665 667999999999 999 66666666 334 4588999 999999988765444
Q ss_pred cCCC
Q psy3589 575 KGEE 578 (604)
Q Consensus 575 ~~~~ 578 (604)
.|..
T Consensus 169 ~G~~ 172 (208)
T 3b85_A 169 SGLR 172 (208)
T ss_dssp -CCH
T ss_pred CcHH
Confidence 4433
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.52 E-value=1.3e-15 Score=144.23 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=55.8
Q ss_pred ccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHH----------------HHHHHHHh-hhhcCCCCe
Q psy3589 494 KTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDID----------------EILWIQAR-TKEEPYKHP 556 (604)
Q Consensus 494 sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~----------------~~~~L~~~-~~l~~~g~t 556 (604)
+||+.++..+|+++ +.+|.+++|||| |++||+. ....+.++ ..+.+.|.|
T Consensus 85 s~g~~qrv~iAral------------~~~p~~lllDEP-t~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~t 151 (171)
T 4gp7_A 85 ESARKPLIEMAKDY------------HCFPVAVVFNLP-EKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFR 151 (171)
T ss_dssp HHHHHHHHHHHHHT------------TCEEEEEEECCC-HHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCS
T ss_pred HHHHHHHHHHHHHc------------CCcEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCc
Confidence 57888999999988 445999999999 9999988 55777766 445455999
Q ss_pred EEEEecChhhhhhhhhhc
Q psy3589 557 LVSVSDDEAEGKNVKRKH 574 (604)
Q Consensus 557 VIiVTHD~~e~~~~~~~~ 574 (604)
+|+||||++++..+.+.+
T Consensus 152 vi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 152 YVYILNSPEEVEEVVFER 169 (171)
T ss_dssp EEEEECSHHHHHHEEEEE
T ss_pred EEEEeCCHHHhhhhhhcc
Confidence 999999999998876543
No 70
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.50 E-value=4.1e-14 Score=154.55 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
++.+++...++.+|+||+|+|++.++...+..+.+++. ..++|+|||+||+|+.... ..+.+++...+ -.++++|
T Consensus 91 ~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~-~~~~pvilV~NK~D~~~~~--~~~~e~~~lg~--~~~~~iS 165 (456)
T 4dcu_A 91 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY-RTKKPVVLAVNKLDNTEMR--ANIYDFYSLGF--GEPYPIS 165 (456)
T ss_dssp HHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHT-TCCSCEEEEEECC-----------CCSGGGSS--SSEEECC
T ss_pred HHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHH-HcCCCEEEEEECccchhhh--hhHHHHHHcCC--CceEEee
Confidence 34456667889999999999999988877777888876 4689999999999997543 33444444433 2456777
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVG 345 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 345 (604)
|. ++.|+.+|++.+...++...
T Consensus 166 A~----------------------------~g~gv~~L~~~i~~~l~~~~------------------------------ 187 (456)
T 4dcu_A 166 GT----------------------------HGLGLGDLLDAVAEHFKNIP------------------------------ 187 (456)
T ss_dssp TT----------------------------TCTTHHHHHHHHHTTGGGSC------------------------------
T ss_pred cc----------------------------cccchHHHHHHHHhhccccc------------------------------
Confidence 75 56788888887755322100
Q ss_pred hhhhhhhhccchhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEe-cCCeEEecCCCc
Q psy3589 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFL-TDNIRLCDCPGL 422 (604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~-~~~~~l~D~pGl 422 (604)
.........+++++|.+|||||||+|.|+|.....++..+++|.+.. .+.. ...+.++||||+
T Consensus 188 --------------~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~ 253 (456)
T 4dcu_A 188 --------------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 253 (456)
T ss_dssp --------------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGT
T ss_pred --------------ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCC
Confidence 00012345799999999999999999999988777888888887642 2222 235789999997
Q ss_pred cC
Q psy3589 423 VF 424 (604)
Q Consensus 423 ~~ 424 (604)
..
T Consensus 254 ~~ 255 (456)
T 4dcu_A 254 RK 255 (456)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.49 E-value=2e-14 Score=137.25 Aligned_cols=76 Identities=7% Similarity=-0.178 Sum_probs=62.7
Q ss_pred hccCcccHHHHHHH-----HHHhhccceeeeecCCCCcccccC--CCcCCCCHHHHHHHHHhhhhcCCCCeEEEEec---
Q psy3589 493 AKTGRYDSYRAANE-----LLRMATEGRICLCLMPPQYLSKQE--YWEKHPDIDEILWIQARTKEEPYKHPLVSVSD--- 562 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~-----ll~dlSgG~l~al~~pP~lLLLDE--P~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTH--- 562 (604)
+|||+.++..+|++ ++.+ |++++||| | |++||+.....+.++ +.+.+.|+|++||
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~------------p~llilDEigp-~~~ld~~~~~~l~~~--l~~~~~~~i~~~H~~h 141 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDR------------RKVIIIDEIGK-MELFSKKFRDLVRQI--MHDPNVNVVATIPIRD 141 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT------------TCEEEECCCST-TGGGCHHHHHHHHHH--HTCTTSEEEEECCSSC
T ss_pred cCHHHHHHHHHHhhccccccccC------------CCEEEEeCCCC-cccCCHHHHHHHHHH--HhcCCCeEEEEEccCC
Confidence 56899999999996 7444 99999999 9 999999999999998 7777777888885
Q ss_pred ChhhhhhhhhhccCCCcccCc
Q psy3589 563 DEAEGKNVKRKHKGEETEEDE 583 (604)
Q Consensus 563 D~~e~~~~~~~~~~~~~~~~~ 583 (604)
|+.++..+....+|.....+.
T Consensus 142 ~~~~~~~i~~r~~~~i~~~~~ 162 (178)
T 1ye8_A 142 VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp CSHHHHHHHTCTTCEEEECCT
T ss_pred CchHHHHHHhcCCcEEEEecC
Confidence 889998887766677665443
No 72
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.47 E-value=8e-15 Score=178.78 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEE-ecCCCccCCCCCChhhhHhhccccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRL-CDCPGLVFPSKVPKPLQVLMGSFPIAQ 443 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l-~D~pGl~~p~~~~~~~~~l~g~~~i~~ 443 (604)
-+++|||++|||||||+++|+|++.+..|.+...+.++..+.. ...+.+ .+.|- .|... ....+..|.-
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~-Lf~~T--I~eNI~~g~~---- 517 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA-LFNCT--IEENISLGKE---- 517 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC-CCSEE--HHHHHHTTCT----
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcce-eeCCc--hhHHHhhhcc----
Confidence 5799999999999999999999999999987655543322111 112222 23332 22221 2223333321
Q ss_pred ccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHHHHHHHhhccceeeeecCCC
Q psy3589 444 LREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPP 523 (604)
Q Consensus 444 l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP 523 (604)
......+...+..+++...+.. .|..... ..+ .+|. .+||||.|+..+||+++++ |
T Consensus 518 -~~~~~~v~~a~~~a~l~~~i~~-lp~G~~T--------~vG-e~G~-~LSGGQkQRiaiARAl~~~------------~ 573 (1321)
T 4f4c_A 518 -GITREEMVAACKMANAEKFIKT-LPNGYNT--------LVG-DRGT-QLSGGQKQRIAIARALVRN------------P 573 (1321)
T ss_dssp -TCCHHHHHHHHHHTTCHHHHHH-STTTTSS--------EES-SSSC-CCCHHHHHHHHHHHHHTTC------------C
T ss_pred -cchHHHHHHHHHHccchhHHHc-CCCCCcc--------Eec-CCCC-CCCHHHHHHHHHHHHHccC------------C
Confidence 1123445556666554433211 1111000 000 1232 3689999999999999666 9
Q ss_pred CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhhh
Q psy3589 524 QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 524 ~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
++|||||| |++||..+...+.+. ..+. .|+|+|+|||++..+...+
T Consensus 574 ~IliLDE~-tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD 620 (1321)
T 4f4c_A 574 KILLLDEA-TSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNAD 620 (1321)
T ss_dssp SEEEEEST-TTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCS
T ss_pred CEEEEecc-cccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCC
Confidence 99999999 999998887777766 2222 4899999999999887664
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.44 E-value=1.2e-13 Score=148.46 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee---EEEEec---CCeEEecCCCccCCCCCChhhhHhhccccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF---QTIFLT---DNIRLCDCPGLVFPSKVPKPLQVLMGSFPI 441 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~---q~~~~~---~~~~l~D~pGl~~p~~~~~~~~~l~g~~~i 441 (604)
..+||+|+||||||||||+|+|+..+..|.+...+... ..++.. ..+.+.|+||+..+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~--------------- 134 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN--------------- 134 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS---------------
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchH---------------
Confidence 57999999999999999999999998888764332211 111111 234555555543110
Q ss_pred ccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccC--cccHHHHHHHHHHhhccce-eee
Q psy3589 442 AQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTG--RYDSYRAANELLRMATEGR-ICL 518 (604)
Q Consensus 442 ~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG--~~d~~~~Ar~ll~dlSgG~-l~a 518 (604)
..+..++..+++... . ..-. .++| +.++..+|++++.. |+ +..
T Consensus 135 -------~~~~~~L~~~~L~~~---------------------~-~~~~--lS~G~~~kqrv~la~aL~~~---~~p~~l 180 (413)
T 1tq4_A 135 -------FPPDTYLEKMKFYEY---------------------D-FFII--ISATRFKKNDIDIAKAISMM---KKEFYF 180 (413)
T ss_dssp -------CCHHHHHHHTTGGGC---------------------S-EEEE--EESSCCCHHHHHHHHHHHHT---TCEEEE
T ss_pred -------HHHHHHHHHcCCCcc---------------------C-CeEE--eCCCCccHHHHHHHHHHHhc---CCCeEE
Confidence 012233333322110 0 1111 4577 88999999999662 33 556
Q ss_pred ecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-----cC----CCCeEEEEecChhh--hhhh
Q psy3589 519 CLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-----EP----YKHPLVSVSDDEAE--GKNV 570 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-----~~----~g~tVIiVTHD~~e--~~~~ 570 (604)
....|++++|||| |++||+..+..+.+. ..+ .+ ...+|+++||++.+ +..+
T Consensus 181 V~tkpdlllLDEP-tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L 243 (413)
T 1tq4_A 181 VRTKVDSDITNEA-DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVL 243 (413)
T ss_dssp EECCHHHHHHHHH-TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHH
T ss_pred EEecCcccccCcc-cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHH
Confidence 7778999999999 999998777666655 333 12 23568889998876 4443
No 74
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.43 E-value=2.5e-13 Score=144.10 Aligned_cols=72 Identities=10% Similarity=-0.052 Sum_probs=57.6
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
++|||+.++..+|++++.. .++..+|++|||||| |++||+..+..+.++ ..+...|.|||+||||++++..+
T Consensus 279 ~LSgGe~qr~~la~al~~~------~~~~~~p~~lllDEp-t~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~ 351 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLA------EVASGRLDAFFIDEG-FSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAF 351 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHH------HHTTTTCCEEEEESC-CTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHhh------hcccCCCCEEEEeCC-CccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC
Confidence 4678888888888888521 012357999999999 999999999998887 56666799999999999986544
No 75
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.43 E-value=5.8e-14 Score=160.53 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=60.0
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.|+..+||+|+.+ ..+|++|||||| |++||+.....+.++ ..+.+.|.|||+||||++++..
T Consensus 542 ~~LSgG~~qrv~iAraL~~~---------p~~p~llllDEP-t~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~ 611 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRR---------SNGRTLYILDEP-TTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT 611 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSC---------CCSCEEEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred hhCCHHHHHHHHHHHHHhhC---------CCCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh
Confidence 35789999999999999655 112569999999 999999999988888 5666669999999999998865
Q ss_pred hhhh
Q psy3589 570 VKRK 573 (604)
Q Consensus 570 ~~~~ 573 (604)
.++.
T Consensus 612 ~d~i 615 (670)
T 3ux8_A 612 ADYI 615 (670)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 5443
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.43 E-value=4.6e-14 Score=151.80 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=54.7
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCC--CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPP--QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP--~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
+|||+.++..+|++++.+ | ++|||||| |+|||+..+.+|.++ ..+. .|+|||+||||+..+..
T Consensus 296 lSgGe~qrl~lA~~l~~~------------~~~~~LlLDEp-t~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLG------------ADTPSVVFDEV-DAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SCHHHHHHHHHHHHHHHC------------CSSSEEEESST-TTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTT
T ss_pred cCHhHHHHHHHHHHHHhC------------CCCCEEEEECC-CCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhh
Confidence 478999999999988665 8 99999999 999999999999988 4454 48999999999987654
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
.
T Consensus 362 ~ 362 (415)
T 4aby_A 362 A 362 (415)
T ss_dssp C
T ss_pred c
Confidence 3
No 77
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.39 E-value=2.2e-14 Score=151.74 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=100.4
Q ss_pred cCEEEEEEecCCCCCCCChhHHHHhhc-cCCCcEEEEEeCCCCCCHHhHHHHHHHHHh-hCCCceEEEEeeccCcccccc
Q psy3589 198 SDIILIIIDIRYPCLMFPPTLYDYVTG-TLGKDMILVMNKIDLAPAPLVLAWKHYFQS-KFPKLTILCFTSYPTYNLRNN 275 (604)
Q Consensus 198 sDiVl~VvDaR~Pl~~~~~~L~~yv~~-~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~-~~p~~~vv~~Sa~~~~~~~~~ 275 (604)
+|.+..|+|++.|+...++.+.+++.. ...++++++|||+|++++.....|..||.. .++. +..
T Consensus 58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~------~~~-------- 123 (357)
T 2e87_A 58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSN------DPN-------- 123 (357)
T ss_dssp HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------CHH--------
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CHH--------
Confidence 566778889998888889988877632 135788899999999999999999999987 4211 000
Q ss_pred cccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhccccchhhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhhhcc
Q psy3589 276 IENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELKKVDT 355 (604)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (604)
..... ...+...+...+..+... + ..+.... ....
T Consensus 124 -------~~~~~--------~~~~~~~l~~~~~~~~~~---l----~~l~~~~----------------------~~~~- 158 (357)
T 2e87_A 124 -------EIAEL--------RRQFYGRVASVLRDIDDR---L----RYLNKAR----------------------EVLK- 158 (357)
T ss_dssp -------HHHHH--------HHHHHHHHHHHHHHTHHH---H----HHHHHHH----------------------HHGG-
T ss_pred -------HHHHH--------HHHHHHHHHHHHHHHHHH---H----HHHHHHH----------------------HHHh-
Confidence 00000 112222333322221000 0 0000000 0000
Q ss_pred chhhccccCCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec---CCeEEecCCCccC
Q psy3589 356 NYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT---DNIRLCDCPGLVF 424 (604)
Q Consensus 356 ~~~~~~~~~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~---~~~~l~D~pGl~~ 424 (604)
.......+..+++++|+||||||||+|.|+|.. +.++..++.|...+...+. ..+.++||||+..
T Consensus 159 ---~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 159 ---DLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226 (357)
T ss_dssp ---GSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSS
T ss_pred ---cCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccc
Confidence 000112355799999999999999999999987 4567778888776654433 2367899999853
No 78
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.1e-14 Score=158.75 Aligned_cols=58 Identities=12% Similarity=-0.054 Sum_probs=50.1
Q ss_pred hhccCcccHHHHHHH--HHHhhccceeeeecCCCCc----ccccC-CCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecCh
Q psy3589 492 TAKTGRYDSYRAANE--LLRMATEGRICLCLMPPQY----LSKQE-YWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDE 564 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~--ll~dlSgG~l~al~~pP~l----LLLDE-P~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~ 564 (604)
.++||+.++..+|++ ++.+ |++ ||||| | |++||+. ...|.++ +.+.+.|+|+||||.
T Consensus 235 ~LSgGq~qrlalAra~rL~~~------------p~i~~sGLlLDEpP-ts~LD~~-~~~l~~l--~~~~~~tviiVth~~ 298 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLD------------PQVRRSGCIVDTPS-ISQLDEN-LAELHHI--IEKLNVNIMLVLCSE 298 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------HHHHHSCEEEECCC-GGGSCSS-CHHHHHH--HHHTTCCEEEEECCS
T ss_pred hhhHHHHHHHHHHHHHHhccC------------cccCcceEEEeCCc-ccccChh-HHHHHHH--HHHhCCCEEEEEccC
Confidence 357999999999999 8666 999 99999 9 9999988 6677776 556688999999998
Q ss_pred h
Q psy3589 565 A 565 (604)
Q Consensus 565 ~ 565 (604)
.
T Consensus 299 ~ 299 (460)
T 2npi_A 299 T 299 (460)
T ss_dssp S
T ss_pred c
Confidence 7
No 79
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.34 E-value=1.1e-12 Score=152.97 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=60.8
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.|+..+|++|++. ..+|.+|||||| |+|||+..+..|.++ ..+.+.|.|||+||||++++..
T Consensus 804 ~~LSGGErQRV~LAraL~~~---------p~~p~LLILDEP-TsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ 873 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKR---------DTGRTLYILDEP-TVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN 873 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSC---------CCSSEEEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHhhC---------CCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 35789999999999999554 123689999999 999999999998888 5566679999999999999876
Q ss_pred hhhh
Q psy3589 570 VKRK 573 (604)
Q Consensus 570 ~~~~ 573 (604)
.+++
T Consensus 874 ADrI 877 (916)
T 3pih_A 874 ADHI 877 (916)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 6544
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.30 E-value=8.6e-14 Score=135.60 Aligned_cols=56 Identities=11% Similarity=-0.033 Sum_probs=45.2
Q ss_pred ceeeeecCCCCcccccCCCcCCC----CHHHHHHHHHh-hhhc-CCCCeEEEEecChhhhhhh
Q psy3589 514 GRICLCLMPPQYLSKQEYWEKHP----DIDEILWIQAR-TKEE-PYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 514 G~l~al~~pP~lLLLDEP~T~~L----D~~~~~~L~~~-~~l~-~~g~tVIiVTHD~~e~~~~ 570 (604)
+.+.+++.+|++++|||| ++++ |+..+..+.++ ..+. +.+.|||+||||++++..+
T Consensus 133 ~~lS~l~~~p~~~~LDep-~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~ 194 (207)
T 1znw_A 133 EAVTVFLAPPSWQDLQAR-LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAE 194 (207)
T ss_dssp TSEEEEEECSCHHHHHHH-HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHH
T ss_pred CcEEEEEECCCHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHH
Confidence 345588889999999999 9998 66677777766 4453 4589999999999999875
No 81
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.28 E-value=1.5e-12 Score=150.70 Aligned_cols=71 Identities=13% Similarity=0.000 Sum_probs=57.5
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
..++|||+.|+..+|++|+.+ ...|++|||||| |+|||+..+..|.++ ..+.+.|.|||+||||++++.
T Consensus 728 ~~~LSGGekQRv~LAraL~~~---------p~~p~lLILDEP-TsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~ 797 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRS---------GRGGTVYVLDEP-TTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVA 797 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSC---------CSSCEEEEEECT-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHhC---------CCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 345778999999998888332 003799999999 999999999998887 566667999999999999984
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
..
T Consensus 798 ~a 799 (842)
T 2vf7_A 798 AS 799 (842)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 82
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.25 E-value=2.7e-12 Score=130.57 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG 400 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g 400 (604)
.++||||+||||||||||+|+|+..+..|.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~ 35 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWN 35 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCcccc
Confidence 579999999999999999999999888886543
No 83
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.23 E-value=7.5e-12 Score=145.87 Aligned_cols=71 Identities=13% Similarity=0.005 Sum_probs=57.7
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
..++|||+.++..+|++|+.+ -..|++|||||| |+|||+..+..|.++ ..+.+.|.||||||||++++.
T Consensus 861 ~~~LSGGekQRv~LAraL~~~---------p~~p~lLILDEP-TsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~ 930 (993)
T 2ygr_A 861 APTLSGGEAQRVKLASELQKR---------STGRTVYILDEP-TTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK 930 (993)
T ss_dssp GGGSCHHHHHHHHHHHHHSSC---------CCSSEEEEEEST-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHhC---------CCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 345789999999999988432 012699999999 999999999998887 556667999999999999875
Q ss_pred hh
Q psy3589 569 NV 570 (604)
Q Consensus 569 ~~ 570 (604)
..
T Consensus 931 ~a 932 (993)
T 2ygr_A 931 TS 932 (993)
T ss_dssp TC
T ss_pred hC
Confidence 44
No 84
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.21 E-value=6e-12 Score=146.15 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=57.4
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~ 569 (604)
.++|||+.|+..+|++|+.. -..|++|||||| |+|||+..+..|.++ ..+.+.|.|||+||||++++..
T Consensus 844 ~~LSGGekQRv~LAraL~~~---------p~~p~lLILDEP-TsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~ 913 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRR---------SNGRTLYILDEP-TTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT 913 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSC---------CCSCEEEEEECT-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred hhCCHHHHHHHHHHHHHhcC---------CCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHh
Confidence 45789999999999998432 012699999999 999999999998887 5566679999999999998754
Q ss_pred h
Q psy3589 570 V 570 (604)
Q Consensus 570 ~ 570 (604)
.
T Consensus 914 a 914 (972)
T 2r6f_A 914 A 914 (972)
T ss_dssp C
T ss_pred C
Confidence 3
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.15 E-value=5.8e-11 Score=124.59 Aligned_cols=69 Identities=14% Similarity=-0.087 Sum_probs=51.1
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
.+|||+.++..+|+.+.-. .+++.+|++|||||| |+|||+..+..+.++ ..+...+.|||+||||.+..
T Consensus 248 ~lS~G~~~~~~la~~l~~a------~~l~~~p~~lllDEp-~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~ 317 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMS------LYLAGEISLLILDEP-TPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK 317 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHH------HHTTTTTCEEEEECC-CTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGG
T ss_pred HCCHHHHHHHHHHHHHHHH------HHhcCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHH
Confidence 3567777766555444211 145677999999999 999999999888887 44455578999999996543
No 86
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.10 E-value=4.9e-11 Score=124.23 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=50.7
Q ss_pred hhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 492 TAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 492 s~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
.+|||+.++..+|++++.. .+.+|+++||||| |++||+.....|.++ ..+. .+.+||+|||+...+.
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~--------~~~~~~~lllDEp-~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~ 286 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALM--------EIKPSPFYVLDEV-DSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVME 286 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHT--------TTSCCSEEEEESC-CSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGG
T ss_pred hCCHHHHHHHHHHHHHHHh--------ccCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHh
Confidence 4567777777777776321 0256899999999 999999999999888 4443 3789999999965433
No 87
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.99 E-value=2.6e-10 Score=119.18 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=39.8
Q ss_pred cCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhh
Q psy3589 495 TGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 495 GG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
||+.++..+|++++ .+|+++++||| |+. +....|.. +...+.|+|++||+......+
T Consensus 225 gg~~~r~~la~aL~------------~~p~ilildE~-~~~---e~~~~l~~---~~~g~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 225 GNITSADCLKSCLR------------MRPDRIILGEL-RSS---EAYDFYNV---LCSGHKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp TTBCHHHHHHHHTT------------SCCSEEEECCC-CST---HHHHHHHH---HHTTCCCEEEEEECSSHHHHH
T ss_pred CChhHHHHHHHHhh------------hCCCEEEEcCC-ChH---HHHHHHHH---HhcCCCEEEEEEcccHHHHHh
Confidence 68888999999884 45999999999 872 33333333 333234799999998844333
No 88
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.99 E-value=2.1e-10 Score=113.74 Aligned_cols=46 Identities=4% Similarity=-0.177 Sum_probs=35.2
Q ss_pred CCCCcccccCCCcCCCC-----HHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 521 MPPQYLSKQEYWEKHPD-----IDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD-----~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
.+|+++++||| |++|| ......+..+ ..+++.|.|||+|||++.++
T Consensus 134 ~~p~~lilDep-~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSI-PSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECH-HHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEccH-HHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 46999999999 99997 5556656666 45666799999999998887
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.97 E-value=3.7e-10 Score=114.19 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhh
Q psy3589 500 SYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 500 ~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~ 568 (604)
+..+++++..+ |+++++||| | |..+...+... . ..|.+||++||+.+...
T Consensus 88 ~~~la~aL~~~------------p~illlDEp-~---D~~~~~~~l~~--~-~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 88 ADALRAALRED------------PDVIFVGEM-R---DLETVETALRA--A-ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHHHHHC------------CSEEEESCC-C---SHHHHHHHHHH--H-HTTCEEEEEECCSSHHH
T ss_pred HHHHHHHHhhC------------CCEEEeCCC-C---CHHHHHHHHHH--H-ccCCEEEEEeCcchHHH
Confidence 35667777554 999999999 8 88876554443 3 45899999999987443
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.97 E-value=2.3e-10 Score=133.67 Aligned_cols=52 Identities=12% Similarity=-0.053 Sum_probs=39.9
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHH-Hh-hhhc-CCCCeEEEEecChhhhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQ-AR-TKEE-PYKHPLVSVSDDEAEGKNVKR 572 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~-~~-~~l~-~~g~tVIiVTHD~~e~~~~~~ 572 (604)
+.+|.++||||| ++|||+.....+. .+ ..+. +.|.|||+||||.+.+....+
T Consensus 750 a~~p~LlLLDEP-~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 750 ATSQSLVILDEL-GRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CCTTCEEEEEST-TTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred ccCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 367999999999 9999998766665 44 3343 468999999999887754443
No 91
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.93 E-value=8.1e-11 Score=113.30 Aligned_cols=65 Identities=6% Similarity=-0.109 Sum_probs=49.5
Q ss_pred eecCCCCcccccC--CCcCCCCHHHHHHHHHhhhhcCCCCeEE---EEecCh--hhhhhhhhhccCCCcccCcCc
Q psy3589 518 LCLMPPQYLSKQE--YWEKHPDIDEILWIQARTKEEPYKHPLV---SVSDDE--AEGKNVKRKHKGEETEEDEGE 585 (604)
Q Consensus 518 al~~pP~lLLLDE--P~T~~LD~~~~~~L~~~~~l~~~g~tVI---iVTHD~--~e~~~~~~~~~~~~~~~~~~~ 585 (604)
+++.+|+++|+|| | ++.+|......|.++ +.....+|| .|||+. .++.++....+|.....+...
T Consensus 101 A~~~~~dvlilDE~g~-~~~~~~~~~~~l~~~--l~~~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~n 172 (189)
T 2i3b_A 101 SSGPGQRVCVIDEIGK-MELFSQLFIQAVRQT--LSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKEN 172 (189)
T ss_dssp CCSSCCCCEEECCCST-TTTTCSHHHHHHHHH--HHCSSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSS
T ss_pred hhccCCCEEEEeCCCc-cccccHHHHHHHHHH--HhCCCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHh
Confidence 3577899999999 9 999999888888888 665544442 445987 778888877788887776543
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.92 E-value=5.5e-10 Score=130.87 Aligned_cols=49 Identities=4% Similarity=-0.193 Sum_probs=37.5
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHH-HHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWI-QAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L-~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
+.+|.++||||| |+|||+.....+ ..+ ..+.+ .|.++||+||+.+.+..
T Consensus 739 a~~~sLlLLDEp-~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 739 ATKDSLIIIDEL-GRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL 790 (934)
T ss_dssp CCTTCEEEEESC-SCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGG
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHH
Confidence 457999999999 999998776555 333 33543 58999999999776643
No 93
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.88 E-value=1.8e-10 Score=111.20 Aligned_cols=59 Identities=32% Similarity=0.554 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC-CccccCcCcccceeEEEEecCCeEEecCCCccC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~-~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
...+++|+|+||||||||+|+|+|.. ...+...+|.+.....+.......+.|+||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 34689999999999999999999987 333344556665544444455788899999854
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.88 E-value=4e-10 Score=116.30 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCC-CCcccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGR-KVVSVS 396 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~-~~~~~g 396 (604)
.++|+|||+||||||||||+|+|. ..+..|
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC--------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 378999999999999999999997 666555
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.88 E-value=8.6e-10 Score=107.84 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV 393 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~ 393 (604)
-.++|+|+||||||||+++|+|...+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 36899999999999999999995433
No 96
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.84 E-value=8.9e-10 Score=116.25 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=35.9
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKRK 573 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~~~ 573 (604)
..+|+++++||| + |.+....+... ...|.+||+++|+.+.+..+.|.
T Consensus 194 ~~~PdvillDEp-~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRl 240 (356)
T 3jvv_A 194 REDPDIILVGEM-R---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRV 240 (356)
T ss_dssp TSCCSEEEESCC-C---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHH
T ss_pred hhCcCEEecCCC-C---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHH
Confidence 556999999999 8 77776655544 34589999999999987655443
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.82 E-value=2.5e-09 Score=112.67 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHH------------HHHHH-Hhhh-hcCCCCeEEEEecCh
Q psy3589 499 DSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDE------------ILWIQ-ARTK-EEPYKHPLVSVSDDE 564 (604)
Q Consensus 499 d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~------------~~~L~-~~~~-l~~~g~tVIiVTHD~ 564 (604)
++...++.++..+|+|+ .+|+++++||| |++||+.. ...+. .+.. .++.+.|||+++|..
T Consensus 213 ~~l~~~~~~~~~lS~G~-----~~~~llIlDs~-ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 213 LLVQQAEDKIKELLNTD-----RPVKLLIVDSL-TSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHSSSSS-----SCEEEEEEETS-STTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHHHhcccc-----CCCCEEEEeCc-hHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 44556778888889997 78999999999 99998751 22222 2222 345689999999987
Q ss_pred hhhh
Q psy3589 565 AEGK 568 (604)
Q Consensus 565 ~e~~ 568 (604)
..+.
T Consensus 287 ~~~~ 290 (349)
T 1pzn_A 287 ARPD 290 (349)
T ss_dssp ----
T ss_pred cccc
Confidence 7543
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.82 E-value=2e-09 Score=99.43 Aligned_cols=69 Identities=14% Similarity=-0.087 Sum_probs=51.3
Q ss_pred hhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 491 MTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 491 ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
.++|||+.++..+|.++.- +.+++.+|+++||||| |++||+..+..+.++ ..+...|.|||+||||...
T Consensus 56 ~~LSgGe~qrv~lA~~Lal------aral~~~p~lllLDEP-t~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~ 125 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAM------SLYLAGEISLLILDEP-TPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 125 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHH------HHHHHSSCSEEEEESC-SCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred hHCCHHHHHHHHHHhhhHH------HHHHcCCCCEEEEECC-CccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHH
Confidence 3467999999877632100 0122456999999999 999999999998887 4444458899999999843
No 99
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.79 E-value=4.4e-10 Score=116.59 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
....+||+|+||||||||+++|+|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 34679999999999999999999998764
No 100
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.78 E-value=4.3e-11 Score=117.66 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=38.1
Q ss_pred eeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhh-cC------CCCeEEEEecChhhhhhh
Q psy3589 516 ICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKE-EP------YKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 516 l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l-~~------~g~tVIiVTHD~~e~~~~ 570 (604)
+.+++.+|++++|||| ++++|..+...+... ..+ .. .....|+|+||++++...
T Consensus 139 ~~~ll~~~~~~~Lde~-~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~ 200 (218)
T 1z6g_A 139 LYIFIKPPSTDVLLSR-LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQ 200 (218)
T ss_dssp EEEEEECSCHHHHHHH-HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHH
T ss_pred EEEEEeCcCHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHH
Confidence 3477788999999999 999996544433332 111 11 457889999999988765
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.78 E-value=2.3e-09 Score=118.95 Aligned_cols=62 Identities=8% Similarity=-0.072 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCC-----CCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 498 YDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKH-----PDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 498 ~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~-----LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
.+....+..++..+|+|+ |+++++||| |+. ||+..+..|.++ ..+++.|.|||+|||+++++
T Consensus 121 ~~l~~~~~~~~~~LS~g~-------~~~lilDe~-t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 121 FDLSALIERINYAIQKYR-------ARRVSIDSV-TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHHHHHHHHT-------CSEEEEECS-TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred cCHHHHHHHHHHHHHHcC-------CCEEEECCH-HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 344455667777778886 999999999 984 588888888877 55666799999999999884
No 102
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.76 E-value=2.2e-09 Score=105.62 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=35.6
Q ss_pred CCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhhhhccC
Q psy3589 523 PQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKRKHKG 576 (604)
Q Consensus 523 P~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~~~~~~ 576 (604)
+.++||| ||+.....+.+. +. .+.|||++||+++++..-. ..+|
T Consensus 108 G~illLD------LD~~~~~~i~~~--l~-~~~tI~i~th~~~~l~~Rl-~~rG 151 (219)
T 1s96_A 108 GVDVFLD------IDWQGAQQIRQK--MP-HARSIFILPPSKIELDRRL-RGRG 151 (219)
T ss_dssp TCEEEEE------CCHHHHHHHHHH--CT-TCEEEEEECSSHHHHHHHH-HTTS
T ss_pred CCeEEEE------ECHHHHHHHHHH--cc-CCEEEEEECCCHHHHHHHH-HHcC
Confidence 6889999 999999999888 54 5789999999999987632 3444
No 103
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.76 E-value=1.2e-09 Score=112.67 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRT 398 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i 398 (604)
+-.++|||+||||||||+++|+|...+..|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 35799999999999999999999988765554
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.74 E-value=2.2e-08 Score=113.03 Aligned_cols=50 Identities=14% Similarity=-0.093 Sum_probs=36.5
Q ss_pred eecCCCCcccccCCC-----cCCCCHHHHHHHHHh-hh-hc-CCCCeEEEEecChhhh
Q psy3589 518 LCLMPPQYLSKQEYW-----EKHPDIDEILWIQAR-TK-EE-PYKHPLVSVSDDEAEG 567 (604)
Q Consensus 518 al~~pP~lLLLDEP~-----T~~LD~~~~~~L~~~-~~-l~-~~g~tVIiVTHD~~e~ 567 (604)
+....|+++++|||- |++||......+.++ .. +. ..+.+++++|||++.+
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 444569999999992 789998887777766 33 22 3467899999998844
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.73 E-value=2.1e-09 Score=123.68 Aligned_cols=47 Identities=6% Similarity=-0.188 Sum_probs=35.2
Q ss_pred cCCCCcccccCCC--cCCCCHHHH-HHHHHhhhhcCCCCeEEEEecChhhhh
Q psy3589 520 LMPPQYLSKQEYW--EKHPDIDEI-LWIQARTKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 520 ~~pP~lLLLDEP~--T~~LD~~~~-~~L~~~~~l~~~g~tVIiVTHD~~e~~ 568 (604)
+.+|+++|||||- |++||..+. ..+.+. +.+.|.++|++||+.+.+.
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~--L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEA--LHERRAYTLFATHYFELTA 702 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHH--HHHHTCEEEEECCCHHHHT
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHH--HHhCCCEEEEEeCCHHHHH
Confidence 5679999999993 455777664 345555 4446899999999988764
No 106
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.73 E-value=7.5e-09 Score=122.69 Aligned_cols=50 Identities=6% Similarity=-0.095 Sum_probs=39.1
Q ss_pred cCCCCcccccCCCcCCCCHHH-HHHHHHh-hhhcCC-CCeEEEEecChhhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDE-ILWIQAR-TKEEPY-KHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~-~~~L~~~-~~l~~~-g~tVIiVTHD~~e~~~~ 570 (604)
+.+|.++||||| ++|+|+.. ...+..+ ..+.+. |.++|++||+.+++..+
T Consensus 866 a~~~sLlLLDEp-~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~ 918 (1022)
T 2o8b_B 866 ATAHSLVLVDEL-GRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY 918 (1022)
T ss_dssp CCTTCEEEEECT-TTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHT
T ss_pred CCCCcEEEEECC-CCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHh
Confidence 667999999999 99999776 3434444 335544 89999999999998765
No 107
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.70 E-value=2.9e-09 Score=112.31 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRT 398 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i 398 (604)
+-.++|||+||||||||+++|+|++.+..|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 35799999999999999999999987765554
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.70 E-value=5e-09 Score=121.27 Aligned_cols=49 Identities=8% Similarity=-0.148 Sum_probs=36.3
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHH-HHh-hhhcC-CCCeEEEEecChhhhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWI-QAR-TKEEP-YKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L-~~~-~~l~~-~g~tVIiVTHD~~e~~~ 569 (604)
+.+|.++||||| ++|+|+.....+ ..+ ..+.+ .|.++|++|||.+.+..
T Consensus 684 a~~psLlLLDEp-~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l 735 (800)
T 1wb9_A 684 ATEYSLVLMDEI-GRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQL 735 (800)
T ss_dssp CCTTEEEEEESC-CCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGH
T ss_pred ccCCCEEEEECC-CCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHH
Confidence 567999999999 999996543332 333 33554 58999999999987653
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=8e-09 Score=97.67 Aligned_cols=46 Identities=7% Similarity=-0.137 Sum_probs=35.9
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
.|++|++|||++.++|......|..+ ......+.++|++||...+.
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 49999999993359999888888776 33445689999999987543
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=4.1e-08 Score=105.61 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=31.6
Q ss_pred eecCCCC---cccccCCCc-CCCCHHHHHHHHHhhhhcCCCCeEEEEecChhh
Q psy3589 518 LCLMPPQ---YLSKQEYWE-KHPDIDEILWIQARTKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 518 al~~pP~---lLLLDEP~T-~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e 566 (604)
+++.+|. +|++||| | ++||.....++..+ .. +.+||+|.|-.+.
T Consensus 132 al~~d~~~~vlL~ldeP-t~~~L~~~d~~~lk~L---~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 132 RQMPDNRVQCCLYFIAP-SGHGLKPLDIEFMKRL---HE-KVNIIPLIAKADT 179 (418)
T ss_dssp CCCCCC-CCEEEEECCC--CCSCCHHHHHHHHHH---TT-TSEEEEEEESTTS
T ss_pred HhccCCCeeEEEEEecC-cccCCCHHHHHHHHHH---hc-cCcEEEEEEcccC
Confidence 4566788 8999999 9 69998887666554 33 6888888886654
No 111
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.64 E-value=3.2e-09 Score=117.78 Aligned_cols=58 Identities=3% Similarity=-0.175 Sum_probs=48.3
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHH-----HHHHHHHh-hhhcCCCCeEEEEecCh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDID-----EILWIQAR-TKEEPYKHPLVSVSDDE 564 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~-----~~~~L~~~-~~l~~~g~tVIiVTHD~ 564 (604)
++||+.++..+|+++ ..+|+++++| | |++||.. .+..+..+ ..+++.|.|||+|||+.
T Consensus 354 LS~g~~q~~~~a~~l------------~~~p~llilD-p-~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 354 AGLEDHLQIIKSEIN------------DFKPARIAID-S-LSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp SCHHHHHHHHHHHHH------------TTCCSEEEEE-C-HHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CCHHHHHHHHHHHHH------------hhCCCEEEEc-C-hHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 467888888888777 4559999999 9 9999988 77777776 55677899999999998
No 112
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.62 E-value=5e-10 Score=108.63 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=35.4
Q ss_pred eecCCCCcccccCCCcCC-------CCHHHHHHHHHh-hh-hcCCCCeEEEEecChh
Q psy3589 518 LCLMPPQYLSKQEYWEKH-------PDIDEILWIQAR-TK-EEPYKHPLVSVSDDEA 565 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~-------LD~~~~~~L~~~-~~-l~~~g~tVIiVTHD~~ 565 (604)
+++.+|.++++||| +++ ||......+... .. ....|.|+++++|+..
T Consensus 107 ~li~~~~ll~~de~-~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 107 VVILEGILVLYPKE-LRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEEESTTTTSSHH-HHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEEeehhhccCHH-HHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67788999999999 998 897665555554 22 3345889999999854
No 113
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=8.8e-09 Score=109.80 Aligned_cols=59 Identities=29% Similarity=0.352 Sum_probs=44.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEec------------------CCeEEecCCCccCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLT------------------DNIRLCDCPGLVFP 425 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~------------------~~~~l~D~pGl~~p 425 (604)
..++||||+||||||||||+|+|.....++..|++|.... .+.+. ..+.++|+||++..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 4689999999999999999999976545777777765432 22222 13678999998744
No 114
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.58 E-value=1.6e-08 Score=118.13 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=60.5
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
..++|||+.|+.++|++|... ..|.+|||||| |+|||+....+|.++ ..+++.|.|||+||||++++.
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~----------p~~~lllLDEP-T~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~ 530 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSG----------LTGVIYVLDEP-TIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR 530 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTT----------CCSCEEEEECT-TTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhhC----------CCCcEEEEECC-ccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 445789999999999999665 22449999999 999999999999888 667777999999999999886
Q ss_pred hhhh
Q psy3589 569 NVKR 572 (604)
Q Consensus 569 ~~~~ 572 (604)
..++
T Consensus 531 ~aD~ 534 (916)
T 3pih_A 531 NADH 534 (916)
T ss_dssp TCSE
T ss_pred hCCE
Confidence 6543
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.51 E-value=2.3e-07 Score=95.73 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHhhhcCEEEEEEecCCCCCCCChhH-HHHhhccCCCcEEEEEeCCCCC-CHHhHHHHHHHHHhhC-CC
Q psy3589 182 ELNLETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTL-YDYVTGTLGKDMILVMNKIDLA-PAPLVLAWKHYFQSKF-PK 258 (604)
Q Consensus 182 E~Nle~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L-~~yv~~~~~K~~ILVlNK~DLv-~~~~~~~w~~yf~~~~-p~ 258 (604)
..+..+.+..+..+..+|+||+|+|+.++.......+ ...+. ..+.|+|+|+||+|++ +......+...+...+ +.
T Consensus 77 ~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~-~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 77 VLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK-PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTG-GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHH-hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCC
Confidence 3445566677788899999999999998876555444 45555 3578999999999999 6777777777777776 45
Q ss_pred ceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhcc
Q psy3589 259 LTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQG 313 (604)
Q Consensus 259 ~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~ 313 (604)
..++++||. .+.|+.+|++.+...++.
T Consensus 156 ~~i~~vSA~----------------------------~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 156 TEIVPISAL----------------------------KGANLDELVKTILKYLPE 182 (308)
T ss_dssp CCEEECBTT----------------------------TTBSHHHHHHHHHHHSCB
T ss_pred CeEEEEeCC----------------------------CCCCHHHHHHHHHHhCcc
Confidence 778999986 567889999988877653
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.49 E-value=2.4e-07 Score=92.22 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=31.6
Q ss_pred eecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhh-hhhhh
Q psy3589 518 LCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEG-KNVKR 572 (604)
Q Consensus 518 al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~-~~~~~ 572 (604)
+++.+|+++|+||| ...++.. +.++ .+.+|+++||+...+ ..+.|
T Consensus 129 ~~~~~~~~lilDg~-~~~~~~~----l~~~-----~~~~i~v~th~~~~~~r~~~r 174 (245)
T 2jeo_A 129 TVVYPADVVLFEGI-LVFYSQE----IRDM-----FHLRLFVDTDSDVRLSRRVLR 174 (245)
T ss_dssp EEECCCSEEEEECT-TTTTSHH----HHTT-----CSEEEEEECCHHHHHHHHHHH
T ss_pred EEecCCCEEEEeCc-cccccHH----HHHh-----cCeEEEEECCHHHHHHHHHHH
Confidence 56678999999999 8777753 2222 378999999974444 44444
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.48 E-value=9.7e-08 Score=93.00 Aligned_cols=43 Identities=7% Similarity=-0.084 Sum_probs=31.0
Q ss_pred CCCC--cccccCCCcCCC--CHHHHHHHHHh-hhh-cCCCCeEEEEecCh
Q psy3589 521 MPPQ--YLSKQEYWEKHP--DIDEILWIQAR-TKE-EPYKHPLVSVSDDE 564 (604)
Q Consensus 521 ~pP~--lLLLDEP~T~~L--D~~~~~~L~~~-~~l-~~~g~tVIiVTHD~ 564 (604)
.+|+ ++++||| |+.+ |+.....+... ..+ ++.|.|||++||+.
T Consensus 120 ~~~~~~llilDe~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 120 LGYGKARLVIDSV-SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HCSSCEEEEEETG-GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred hCCCceEEEEECc-hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 3599 9999999 9877 87665555444 333 45689999999998
No 118
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.46 E-value=6.4e-08 Score=113.04 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=59.2
Q ss_pred chhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhh
Q psy3589 489 SYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 489 g~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~ 567 (604)
..-++|||+.|+.++|++|... ..|.+|||||| |++||+....+|..+ ..+++.|.|||+||||++++
T Consensus 518 ~~~tLSGGEkQRV~LA~aL~~~----------~~~~llILDEP-TagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i 586 (993)
T 2ygr_A 518 AAATLSGGEAQRIRLATQIGSG----------LVGVLYVLDEP-SIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTI 586 (993)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTC----------CCSCEEEEECT-TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhC----------CCCcEEEEeCc-ccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHH
Confidence 3446789999999999998332 11589999999 999999999999888 66778899999999999987
Q ss_pred hhh
Q psy3589 568 KNV 570 (604)
Q Consensus 568 ~~~ 570 (604)
...
T Consensus 587 ~~A 589 (993)
T 2ygr_A 587 EHA 589 (993)
T ss_dssp HTC
T ss_pred HhC
Confidence 644
No 119
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.45 E-value=1.5e-07 Score=96.26 Aligned_cols=45 Identities=9% Similarity=-0.072 Sum_probs=29.3
Q ss_pred ecCCCCcccccCCCcC---C---CCH-HHHHHHHHh-hhh-cCCCCeEEEEecCh
Q psy3589 519 CLMPPQYLSKQEYWEK---H---PDI-DEILWIQAR-TKE-EPYKHPLVSVSDDE 564 (604)
Q Consensus 519 l~~pP~lLLLDEP~T~---~---LD~-~~~~~L~~~-~~l-~~~g~tVIiVTHD~ 564 (604)
+..+|+++++||| |+ + +|. ..+..+... ..+ ++.|.|||++||+.
T Consensus 144 ~~~~p~llilDep-t~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 144 SGLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HTTCCSEEEEEEE-C-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HhcCCCEEEEcCc-cccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 3567999999999 99 4 444 444445444 334 34589999999995
No 120
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.44 E-value=4.8e-08 Score=113.70 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=59.3
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
.-++|||+.|+.++|++|... ..|.+|||||| |++||+....+|.++ ..+++.|.|||+||||++++.
T Consensus 502 ~~tLSGGEkQRV~LA~aL~~~----------~~~~llILDEP-TagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~ 570 (972)
T 2r6f_A 502 AGTLSGGEAQRIRLATQIGSR----------LTGVLYVLDEP-SIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML 570 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHTTC----------CCSCEEEEECT-TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhhC----------CCCCEEEEeCc-ccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 446789999999999998333 12599999999 999999999999888 667788999999999999876
Q ss_pred hhh
Q psy3589 569 NVK 571 (604)
Q Consensus 569 ~~~ 571 (604)
..+
T Consensus 571 ~AD 573 (972)
T 2r6f_A 571 AAD 573 (972)
T ss_dssp SCS
T ss_pred hCC
Confidence 543
No 121
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.44 E-value=1.9e-07 Score=94.78 Aligned_cols=48 Identities=4% Similarity=0.005 Sum_probs=31.0
Q ss_pred cCCCCcccccCCCcC--CCCHHH---HHHHHHh-hhh-cCCCCeEEEEecChhhhh
Q psy3589 520 LMPPQYLSKQEYWEK--HPDIDE---ILWIQAR-TKE-EPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~--~LD~~~---~~~L~~~-~~l-~~~g~tVIiVTHD~~e~~ 568 (604)
+.+|+++++||| ++ ++|... ...+... ..+ ++.|.|||+|+|+...+.
T Consensus 131 ~~~~~livlDe~-~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 131 AEGRRLMVLDTL-RRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HTTCSEEEEECG-GGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred cCCCCEEEECCH-HHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 345999999999 99 888532 2333333 333 456999999999998764
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.43 E-value=1.6e-07 Score=99.63 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
-.++|+|+||||||||+++|+|.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 369999999999999999999988764
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.43 E-value=6.3e-07 Score=86.87 Aligned_cols=94 Identities=13% Similarity=0.183 Sum_probs=67.5
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHH----HHHHHhh-----CCCce
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAW----KHYFQSK-----FPKLT 260 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w----~~yf~~~-----~p~~~ 260 (604)
+..+....+|+||+|+|+++++......+..++. ..++|+|+|+||+|+++......+ .+.+... ....+
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFA-PTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLT 186 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHG-GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCe
Confidence 3334456689999999999987655555666665 357899999999999987664333 3334332 24578
Q ss_pred EEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 261 ILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 261 vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
++++||+ .+.|+.+|++.+...++
T Consensus 187 ~~~~SA~----------------------------~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 187 VQLFSAL----------------------------KRTGLDDAHALIESWLR 210 (223)
T ss_dssp EEEEBTT----------------------------TTBSHHHHHHHHHHHHC
T ss_pred EEEeecC----------------------------CCcCHHHHHHHHHHhcC
Confidence 8999987 56788899888877654
No 124
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.41 E-value=1.5e-07 Score=97.05 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRT 398 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i 398 (604)
.-.++|+|+||||||||+++|+|+..+..|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V 133 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV 133 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 45799999999999999999999988765544
No 125
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.39 E-value=4.8e-07 Score=97.11 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=33.3
Q ss_pred CCCCcccccCCCcCCCCHHHHHHHHHh-h-hhcCCCCeEEEEecChhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDIDEILWIQAR-T-KEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~~~~~L~~~-~-~l~~~g~tVIiVTHD~~e~ 567 (604)
..+.++++|+| +..|.......+... . .+...|.+|+++|.|-++.
T Consensus 175 ~~~~vI~Vi~K-tD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d~~~ 222 (427)
T 2qag_B 175 SKVNIIPIIAK-ADAISKSELTKFKIKITSELVSNGVQIYQFPTDDESV 222 (427)
T ss_dssp SCSEEEEEESC-GGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-----C
T ss_pred hCCCEEEEEcc-hhccchHHHHHHHHHHHHHHHHcCCcEEecCCCchhH
Confidence 45889999999 999998877777655 3 4788899999999765443
No 126
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.38 E-value=7.1e-08 Score=111.75 Aligned_cols=68 Identities=13% Similarity=-0.002 Sum_probs=57.7
Q ss_pred hhhhccCcccHHHHHHHHHHhhccceeeeecCCC--CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPP--QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 490 ~ls~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP--~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
.-++|||+.|+.++|++|... | .+|||||| |++||+..+.+|..+ ..++..|.|||+||||+++
T Consensus 377 ~~tLSGGe~QRV~LA~aL~~~------------p~~~llILDEP-T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~ 443 (842)
T 2vf7_A 377 TPTLSPGELQRLRLATQLYSN------------LFGVVYVLDEP-SAGLHPADTEALLSALENLKRGGNSLFVVEHDLDV 443 (842)
T ss_dssp GGGSCHHHHHHHHHHHHTTTC------------CCSCEEEEECT-TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred cCcCCHHHHHHHHHHHHHhhC------------CCCeEEEeeCc-cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH
Confidence 345789999999999998443 6 59999999 999999999999887 6678889999999999997
Q ss_pred hhhh
Q psy3589 567 GKNV 570 (604)
Q Consensus 567 ~~~~ 570 (604)
+...
T Consensus 444 l~~a 447 (842)
T 2vf7_A 444 IRRA 447 (842)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 6543
No 127
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.37 E-value=1.3e-07 Score=104.59 Aligned_cols=63 Identities=6% Similarity=-0.020 Sum_probs=55.3
Q ss_pred ccCcccHHHHHHHHHHhhccceeeeecCCC--CcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 494 KTGRYDSYRAANELLRMATEGRICLCLMPP--QYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 494 sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP--~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
|||+.++..+|++++.+ | ++|||||| |++||+.....+..+ ..+.. +.|||+||||+..+...
T Consensus 399 SgG~~qrv~la~~l~~~------------~~~~~lilDEp-~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~ 464 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLG------------ADTPSVVFDEV-DAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARA 464 (517)
T ss_dssp CSSHHHHHHHHHHHHHC------------CCSSEEEECSC-SSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhC------------CCCCEEEEeCC-cCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhC
Confidence 79999999999999666 8 99999999 999999998888877 45555 89999999999987654
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.36 E-value=2.3e-07 Score=85.44 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV 393 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~ 393 (604)
-.++|+|+||+|||||+++|++...+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36889999999999999999997654
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.34 E-value=1.9e-07 Score=92.79 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH---CCCCccccCc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIM---GRKVVSVSRT 398 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~---G~~~~~~g~i 398 (604)
+..++|+|+||||||||+++|+ |+..++.|.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 3579999999999999999999 9988876654
No 130
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.33 E-value=8e-07 Score=87.76 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=39.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcC-cccceeEE--EEec-CCeEEecCCCccC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTP-GHTKHFQT--IFLT-DNIRLCDCPGLVF 424 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~-g~t~~~q~--~~~~-~~~~l~D~pGl~~ 424 (604)
...++|+|||++|||||||+|.|+|......+... +.|..... +... ..+.++||||+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~ 90 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFD 90 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccC
Confidence 35589999999999999999999998765443221 44544432 2222 3578999999863
No 131
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.32 E-value=1e-06 Score=82.96 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHh---hCCCceEEE
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQS---KFPKLTILC 263 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~---~~p~~~vv~ 263 (604)
+|+...+....+|+|++|+|+..+.......+..++. ..+.|+|+|+||+|+.++..+....+.+.. .+...+++.
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK-SLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH-HcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 4455555667789999999998876554455556665 457899999999999977655443333222 223467888
Q ss_pred EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 264 FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 264 ~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
+||+ .+.|+.++++.+.+.+
T Consensus 173 ~Sa~----------------------------~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 173 TSSV----------------------------TGEGISELLDLISTLL 192 (195)
T ss_dssp CCTT----------------------------TCTTHHHHHHHHHHHH
T ss_pred EecC----------------------------CCCCHHHHHHHHHHHh
Confidence 8886 5678888888776643
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.31 E-value=3.4e-07 Score=98.32 Aligned_cols=54 Identities=31% Similarity=0.528 Sum_probs=40.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEec--CCeEEecCCCcc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLT--DNIRLCDCPGLV 423 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~--~~~~l~D~pGl~ 423 (604)
.|+|||+||||||||||+|+|..+ .++..+++|.... .+... ..+.+.|+||+.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccc
Confidence 589999999999999999999864 4556666654432 33333 346789999985
No 133
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.29 E-value=1.2e-06 Score=84.63 Aligned_cols=44 Identities=7% Similarity=0.011 Sum_probs=30.4
Q ss_pred CCCcccccCCCcCCCCHH--------HHHHHHH-hhh-hcCCCCeEEEEecChhh
Q psy3589 522 PPQYLSKQEYWEKHPDID--------EILWIQA-RTK-EEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~--------~~~~L~~-~~~-l~~~g~tVIiVTHD~~e 566 (604)
+|+++++||| ++.+|.. ....+.. +.. .++.+.|||+++|....
T Consensus 105 ~~~lliiD~~-~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~ 158 (220)
T 2cvh_A 105 NFALVVVDSI-TAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFD 158 (220)
T ss_dssp TEEEEEEECC-CCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CCCEEEEcCc-HHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEc
Confidence 4999999999 9999852 2222222 222 34558999999998764
No 134
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.28 E-value=3.9e-07 Score=86.15 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=54.2
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGKNV 570 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~~~ 570 (604)
+|||+.++..+|++++.. -+.||+++||||| |++||+.....+.++ ..+. .+.++|+|||+...+...
T Consensus 65 LSgGekqr~ala~~la~~--------~~~~~~~llLDEp-~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~~~~a 133 (173)
T 3kta_B 65 MSGGEKALTALAFVFAIQ--------KFKPAPFYLFDEI-DAHLDDANVKRVADLIKESS-KESQFIVITLRDVMMANA 133 (173)
T ss_dssp CCHHHHHHHHHHHHHHHH--------HHSCCSEEEEEST-TTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhc--------ccCCCCEEEECCC-ccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHHHHhC
Confidence 579999999999999543 1246899999999 999999999998888 3343 357899999997765443
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.25 E-value=2.1e-06 Score=88.36 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhcc-CCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEE
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGT-LGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCF 264 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~-~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~ 264 (604)
+....+..+..+|++|+|+|+.+++......+.+.+... .++|+|||+||+|+.+... ...+.+.+ ++...++++
T Consensus 76 ~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~i 152 (301)
T 1wf3_A 76 MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRML 152 (301)
T ss_dssp HHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEEC
T ss_pred HHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEE
Confidence 445566788899999999999988654444444455422 2789999999999987655 44444443 445678888
Q ss_pred eeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 265 TSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 265 Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
||. ++.|+++|++.+...++
T Consensus 153 SA~----------------------------~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 153 SAL----------------------------DERQVAELKADLLALMP 172 (301)
T ss_dssp CTT----------------------------CHHHHHHHHHHHHTTCC
T ss_pred eCC----------------------------CCCCHHHHHHHHHHhcc
Confidence 886 56788899988877554
No 136
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.25 E-value=9.1e-07 Score=93.41 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSV 395 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~ 395 (604)
-+++|+|+||||||||+++|+|++.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 5799999999999999999999998876
No 137
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.24 E-value=3.1e-07 Score=96.41 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSR 397 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~ 397 (604)
-++||+|+|||||||||++|+|...+++|.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999998876553
No 138
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.24 E-value=1.7e-06 Score=84.90 Aligned_cols=48 Identities=8% Similarity=0.002 Sum_probs=26.4
Q ss_pred CCCCcccccCCCcCCCCHH-------H-----HHHH-HHhhh-hcCCCCeEEEEecChhhhhh
Q psy3589 521 MPPQYLSKQEYWEKHPDID-------E-----ILWI-QARTK-EEPYKHPLVSVSDDEAEGKN 569 (604)
Q Consensus 521 ~pP~lLLLDEP~T~~LD~~-------~-----~~~L-~~~~~-l~~~g~tVIiVTHD~~e~~~ 569 (604)
.+|+++++||| ++.+|.. . ...+ ..+.. .++.|.|||+++|....+..
T Consensus 118 ~~~~lliiD~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~ 179 (243)
T 1n0w_A 118 SRYALLIVDSA-TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG 179 (243)
T ss_dssp SCEEEEEEETS-SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------
T ss_pred CCceEEEEeCc-hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCC
Confidence 35999999999 9999864 2 1222 22222 34468999999998776543
No 139
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.24 E-value=7.2e-07 Score=94.45 Aligned_cols=61 Identities=30% Similarity=0.466 Sum_probs=48.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEe-cCCeEEecCCCccCC
Q psy3589 364 KSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFL-TDNIRLCDCPGLVFP 425 (604)
Q Consensus 364 ~~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~-~~~~~l~D~pGl~~p 425 (604)
+.|..+|||||.||||||||||+|+|.. +.++..|++|..... +.. +..+.++|+||++..
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 4566799999999999999999999975 568899999987543 222 335789999999754
No 140
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.21 E-value=1.6e-06 Score=81.91 Aligned_cols=61 Identities=34% Similarity=0.671 Sum_probs=41.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC-CccccCcCcccceeEEEEecCCeEEecCCCccCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFP 425 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~-~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~p 425 (604)
.+..+|+|+|++|||||||+|.|++.. ....+..++.|...........+.++|+||+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCcc
Confidence 356899999999999999999999975 4556677888887776666778999999997543
No 141
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.20 E-value=2.3e-06 Score=80.48 Aligned_cols=60 Identities=37% Similarity=0.588 Sum_probs=50.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
....+|+|+|.+|||||||+|.|++......+..++.+...........+.++|+||+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGY 80 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCcc
Confidence 345799999999999999999999987666777788888777766777899999999754
No 142
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.18 E-value=2.4e-06 Score=79.83 Aligned_cols=57 Identities=33% Similarity=0.566 Sum_probs=43.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEecC-CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLTD-NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~~-~~~l~D~pGl~ 423 (604)
..+|+|||+||||||||+|.|+|...+.++..+++|.... .+.+.. .+.++|+||+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcc
Confidence 3689999999999999999999987655666777776542 333332 46789999974
No 143
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.18 E-value=5.5e-06 Score=78.15 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=63.9
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHH----HHHHHHhhCCCceEEE
Q psy3589 188 WRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLA----WKHYFQSKFPKLTILC 263 (604)
Q Consensus 188 wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~----w~~yf~~~~p~~~vv~ 263 (604)
|....+....+|++++|+|+.++.......+..++. ..+.|+|+|+||+|+.+...+.. +.+.|... .+..++.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 173 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLK-YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDELIL 173 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSEEEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHH-HcCCCEEEEEECcccCChHHHHHHHHHHHHHHccc-CCCceEE
Confidence 334444455669999999999887655555556665 46789999999999998765433 33333322 3567888
Q ss_pred EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 264 FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 264 ~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+||. .+.|+.+|++.+.+.
T Consensus 174 ~Sa~----------------------------~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 174 FSSE----------------------------TKKGKDEAWGAIKKM 192 (195)
T ss_dssp CCTT----------------------------TCTTHHHHHHHHHHH
T ss_pred EEcc----------------------------CCCCHHHHHHHHHHH
Confidence 8886 556788888777553
No 144
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.12 E-value=2.3e-06 Score=82.90 Aligned_cols=61 Identities=30% Similarity=0.475 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC-CccccCcCcccceeEEEEec----CCeEEecCCCccCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLT----DNIRLCDCPGLVFP 425 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~-~~~~g~i~g~t~~~q~~~~~----~~~~l~D~pGl~~p 425 (604)
...++|+|+|.+|||||||+|.|+|.. ...++..++.|......... ..+.++||||+..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 356799999999999999999999986 34567778888877665554 56889999997644
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=2.6e-06 Score=88.80 Aligned_cols=46 Identities=11% Similarity=-0.025 Sum_probs=34.8
Q ss_pred cCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhh
Q psy3589 520 LMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 520 ~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~ 567 (604)
..+|.++++||| ++ ||......|.....-...+.++|++||+...+
T Consensus 132 ~~~~~vlilDE~-~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 132 AHRYKCVIINEA-NS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177 (354)
T ss_dssp --CCEEEEEECT-TS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCCeEEEEeCc-cc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 456999999999 88 99999888888711122367999999997654
No 146
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.10 E-value=1.2e-06 Score=94.83 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTP 399 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~ 399 (604)
-+++|+|+|||||||||++|+|+..++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~ 189 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVIVVG 189 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeEEEE
Confidence 47999999999999999999999988766543
No 147
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.07 E-value=3.2e-06 Score=85.28 Aligned_cols=56 Identities=32% Similarity=0.528 Sum_probs=44.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVF 424 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~ 424 (604)
++|+|+|++|||||||+|.|+|... .+|..++.|.......+ ...+.++|+||+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 62 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYS 62 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccc
Confidence 6899999999999999999999865 67888888876543322 23478999999864
No 148
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.07 E-value=4.2e-07 Score=94.69 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRT 398 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i 398 (604)
.+-.++|+|+||||||||+++|+|...+..|.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V 160 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV 160 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 346799999999999999999999988765544
No 149
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.05 E-value=5.5e-06 Score=83.92 Aligned_cols=57 Identities=32% Similarity=0.536 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--cCCeEEecCCCccC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--TDNIRLCDCPGLVF 424 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--~~~~~l~D~pGl~~ 424 (604)
.++|+|+|.||||||||+|.|+|... .++..+|.|.......+ ...+.++|+||...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~ 61 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYS 61 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTTCTTEEEEECCCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEecCCeEEEEECCCcCc
Confidence 36899999999999999999999753 47788888876544443 34678999999864
No 150
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.05 E-value=3.9e-06 Score=86.29 Aligned_cols=56 Identities=38% Similarity=0.504 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEe-cCCeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~-~~~~~l~D~pGl~ 423 (604)
..|+|||+||||||||+|.|+|.....++..+++|++... +.. ...+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4799999999999999999999876555667777765332 121 2246789999986
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.03 E-value=4.6e-06 Score=83.11 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcC-cccceeEEE--Ee-cCCeEEecCCCccC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTP-GHTKHFQTI--FL-TDNIRLCDCPGLVF 424 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~-g~t~~~q~~--~~-~~~~~l~D~pGl~~ 424 (604)
...++|+|||.+|||||||+|.|+|.....++..+ +.|...... .. ...+.++||||+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCC
Confidence 34689999999999999999999998765433222 355444322 22 23578999999863
No 152
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.02 E-value=5.8e-06 Score=85.01 Aligned_cols=58 Identities=40% Similarity=0.622 Sum_probs=44.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE-EEe--cCCeEEecCCCccCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT-IFL--TDNIRLCDCPGLVFP 425 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~-~~~--~~~~~l~D~pGl~~p 425 (604)
.+|+|||.+|||||||+|.|+|.....++..+++|++... +.. ...+.++||||+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 4699999999999999999999876656677777766432 211 234678999998754
No 153
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.02 E-value=6.1e-06 Score=83.57 Aligned_cols=59 Identities=32% Similarity=0.484 Sum_probs=46.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFPS 426 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p~ 426 (604)
.++|+|+|.+|||||||+|.|+|.. ..+|..+|.|.......+ ...+.++|+||.....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 3789999999999999999999987 467888888876543322 3457889999986533
No 154
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.01 E-value=5.2e-06 Score=76.71 Aligned_cols=55 Identities=33% Similarity=0.603 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEe-cCCeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~-~~~~~l~D~pGl~ 423 (604)
.+++|+|+||||||||+|.|+|.... .+..++.|.... .+.. ...+.+.|+||..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcc
Confidence 68999999999999999999997543 455666554432 2222 2346788999974
No 155
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.01 E-value=7.1e-06 Score=84.55 Aligned_cols=61 Identities=36% Similarity=0.537 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--e--cCCeEEecCCCccCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--L--TDNIRLCDCPGLVFPS 426 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~--~~~~~l~D~pGl~~p~ 426 (604)
..-.|+|+|.+|||||||+|.|+|.....++..+++|++..... . ...+.++||||+..+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 34589999999999999999999988766777888887654322 2 2347789999997554
No 156
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.99 E-value=6.7e-06 Score=76.43 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF 405 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~ 405 (604)
-.++|+|+||||||||+++|+|.. +..|.+...+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 469999999999999999999999 8888886655554
No 157
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.97 E-value=1.4e-05 Score=85.41 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHH--HHCCCCcccc
Q psy3589 369 TIGCVGQPNVGKSSLMNA--IMGRKVVSVS 396 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~--L~G~~~~~~g 396 (604)
.++|+|+||||||||++. +.+..++..|
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 588999999999999994 4566665444
No 158
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.96 E-value=1.1e-05 Score=74.27 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|++|||||||+|.|++.........+|.+.....+.+.. .+.++|+||..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCC
Confidence 4789999999999999999999987554555556554444444443 35689999974
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.95 E-value=1.4e-05 Score=87.43 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=61.7
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeecc
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
+..|..++.+|+||+|+|+.+|.......+..++ .++|+|+|+||+||.+........+++. .+.+++.+||+
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l---~~~piivV~NK~DL~~~~~~~~~~~~~~---~~~~~i~iSAk- 387 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI---KNKRYLVVINKVDVVEKINEEEIKNKLG---TDRHMVKISAL- 387 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH---TTSSEEEEEEECSSCCCCCHHHHHHHHT---CSTTEEEEEGG-
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh---cCCCEEEEEECcccccccCHHHHHHHhc---CCCcEEEEECC-
Confidence 5567889999999999999988754444444444 3789999999999976422233333332 12468899987
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
++.|+++|++.+.+.
T Consensus 388 ---------------------------tg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 388 ---------------------------KGEGLEKLEESIYRE 402 (482)
T ss_dssp ---------------------------GTCCHHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHHH
Confidence 556777777777653
No 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.95 E-value=7.1e-06 Score=84.28 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=65.7
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCC-HHhHHHHHHHHHhhCCCceEEEEeeccC
Q psy3589 191 LWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAP-APLVLAWKHYFQSKFPKLTILCFTSYPT 269 (604)
Q Consensus 191 lwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~-~~~~~~w~~yf~~~~p~~~vv~~Sa~~~ 269 (604)
.++.+..+|++++|+|+.. +......+.+.+. ..++|+|||+||+|+.. ......+...|...++...++++||+
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~-- 157 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE-- 157 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT--
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC--
Confidence 4556789999999999977 4433334444444 35789999999999987 55555566666655544468888886
Q ss_pred cccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 270 YNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
++.|+.+|++.+...++
T Consensus 158 --------------------------~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 158 --------------------------TGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp --------------------------TTTTHHHHHHHHHTTCC
T ss_pred --------------------------CCCCHHHHHHHHHHhCC
Confidence 56788888888876554
No 161
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.95 E-value=7.5e-06 Score=82.13 Aligned_cols=58 Identities=29% Similarity=0.360 Sum_probs=44.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe--c-CCeEEecCCCccCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL--T-DNIRLCDCPGLVFPS 426 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~--~-~~~~l~D~pGl~~p~ 426 (604)
.+|+|+|.+|||||||+|.|+|.. ..+|..+|.|.......+ . ..+.++|+||+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 379999999999999999999985 457888888866543322 2 346799999986443
No 162
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.94 E-value=7e-06 Score=82.43 Aligned_cols=58 Identities=36% Similarity=0.480 Sum_probs=45.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFP 425 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p 425 (604)
.++|+|+|.+|||||||+|.|+|.... +|..+|.|.......+ ...+.++|+||....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 478999999999999999999997643 6778888876544332 235788999998643
No 163
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.94 E-value=1.1e-05 Score=75.46 Aligned_cols=55 Identities=38% Similarity=0.599 Sum_probs=44.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecCCeEEecCCCccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
++|+|+|.+|||||||+|.|++.. ...+..++.|.....+... .+.++|+||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccc
Confidence 579999999999999999999876 3356667777766665554 788999999754
No 164
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.93 E-value=1.5e-05 Score=85.18 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=63.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCC-CChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh----C-CCceEEE
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLM-FPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSK----F-PKLTILC 263 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~-~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~----~-p~~~vv~ 263 (604)
...+.+..+|++|+|+|++.+... ........+.....+|+|+|+||+||++......+.+.+... + .++++++
T Consensus 91 ~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 170 (403)
T 3sjy_A 91 TMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIP 170 (403)
T ss_dssp HHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEE
T ss_pred HHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 445667889999999999987621 111222222212246899999999999887554444433322 1 2467899
Q ss_pred EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 264 FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 264 ~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
+||+ ++.|+.+|++.+...++
T Consensus 171 vSA~----------------------------~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 171 VSAL----------------------------HKINIDSLIEGIEEYIK 191 (403)
T ss_dssp CBTT----------------------------TTBSHHHHHHHHHHHSC
T ss_pred EECC----------------------------CCcChHHHHHHHHHhCC
Confidence 9987 56788999998877543
No 165
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.89 E-value=1.3e-05 Score=80.76 Aligned_cols=60 Identities=33% Similarity=0.421 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCccCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLVFP 425 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~~p 425 (604)
..++|+++|.+|+|||||+|.|+|.....++..++.|........ ...+.++||||+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 357999999999999999999999876556667777655443332 224788999998643
No 166
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.89 E-value=1.4e-05 Score=73.23 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=58.3
Q ss_pred HhhhcCEEEEEEecCCCCCCC--ChhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMF--PPTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~--~~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+. ...+..++.. ..+.|+|+|+||+||.+......+...+... ..++.++.+||
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSA 150 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcC
Confidence 456899999999999885321 1223333332 1578999999999998764444555554321 12356778887
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
. .+.|+.++++.+...
T Consensus 151 ~----------------------------~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 151 T----------------------------KGTGLDEAMEWLVET 166 (171)
T ss_dssp T----------------------------TCTTHHHHHHHHHHH
T ss_pred C----------------------------CCcCHHHHHHHHHHH
Confidence 6 556788888776553
No 167
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.88 E-value=5.7e-06 Score=89.25 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=49.7
Q ss_pred hccCcccHHHHHHHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAEGK 568 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e~~ 568 (604)
+|||+.++..+|++++.. -..+|+++||||| +++||...+..|..+ ..+...+.++|+|||+...+.
T Consensus 334 lS~Gq~~~~~la~~la~~--------~~~~~~~lllDEp-~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAIN--------SYQPSPFFVLDEV-DAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE 401 (430)
T ss_dssp SCHHHHHHHHHHHHHHHH--------TSSCCSEEEESST-TTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT
T ss_pred CCcchHHHHHHHHHHHHh--------cCCCCCEEEeCCC-cccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence 456666666666666321 0257999999999 999999999999888 444444789999999976544
No 168
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.88 E-value=1.3e-05 Score=75.10 Aligned_cols=56 Identities=32% Similarity=0.582 Sum_probs=40.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEe-cCCeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~-~~~~~l~D~pGl~ 423 (604)
.++|+|+|++|||||||+|.|+|... ..+..++.|..... +.. ...+.++|+||..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 47899999999999999999999653 34555666654332 222 2346789999975
No 169
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.87 E-value=2.6e-06 Score=89.80 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=54.5
Q ss_pred hccCcccHHHHHHHHHHhhccce-eeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhhhhhh
Q psy3589 493 AKTGRYDSYRAANELLRMATEGR-ICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVK 571 (604)
Q Consensus 493 ~sGG~~d~~~~Ar~ll~dlSgG~-l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~~~~~ 571 (604)
+||||.++..+|++++.- + +......|++|||||| |++||+..+..|.++ +...+.|+|++||+...+..+.
T Consensus 266 lS~Gqqq~l~lA~~La~~----~l~~~~~~~p~iLLLDEp-~s~LD~~~~~~l~~~--l~~~~qt~i~~th~~~~~~~i~ 338 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAEL----ELLREKFGEDPVLLLDDF-TAELDPHRRQYLLDL--AASVPQAIVTGTELAPGAALTL 338 (359)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHHHHHSSCCEEEECCG-GGCCCHHHHHHHHHH--HHHSSEEEEEESSCCTTCSEEE
T ss_pred CCHHHHHHHHHHHHHHHh----hhhhhccCCCCEEEEeCc-cccCCHHHHHHHHHH--HHhcCcEEEEEEeccccCCEEE
Confidence 567888888888877520 0 0001146999999999 999999999999988 5444479999999532222333
Q ss_pred hhccCCCcc
Q psy3589 572 RKHKGEETE 580 (604)
Q Consensus 572 ~~~~~~~~~ 580 (604)
....|....
T Consensus 339 ~l~~G~i~~ 347 (359)
T 2o5v_A 339 RAQAGRFTP 347 (359)
T ss_dssp EEETTEEEE
T ss_pred EEECCEEEe
Confidence 445555543
No 170
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.87 E-value=8.7e-06 Score=91.31 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=62.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCH---HhHHHHHHHHHhhCCCceEEEEee
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPA---PLVLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~---~~~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
...+.+..+|.+|+|+|+.++............. ..+.|+|+|+||+|+.+. .....|.++|. .+...++++||
T Consensus 87 ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg--~~~~~vi~vSA 163 (599)
T 3cb4_D 87 EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-EMDLEVVPVLNKIDLPAADPERVAEEIEDIVG--IDATDAVRCSA 163 (599)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTC--CCCTTCEEECT
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HCCCCEEEeeeccCcccccHHHHHHHHHHHhC--CCcceEEEeec
Confidence 3456678899999999999877543322222222 357899999999999763 23344555442 11234788888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhcc
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQG 313 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~ 313 (604)
+ ++.|+.+|++.+...++.
T Consensus 164 k----------------------------tg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 164 K----------------------------TGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp T----------------------------TCTTHHHHHHHHHHHSCC
T ss_pred c----------------------------cCCCchhHHHHHhhcCCC
Confidence 6 567889999988776543
No 171
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.87 E-value=1.4e-05 Score=80.70 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccC-------cCcccceeEEEEec--C---CeEEecCCCccC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSR-------TPGHTKHFQTIFLT--D---NIRLCDCPGLVF 424 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~-------i~g~t~~~q~~~~~--~---~~~l~D~pGl~~ 424 (604)
.++|+|||.+|||||||+|.|+|........ .+..+.......+. . .+.++||||+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 4799999999999999999999876443221 22222333333322 2 568899999853
No 172
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.87 E-value=2.1e-05 Score=73.83 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=58.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+.. ..+..++.. ..+.|+|||+||+||........+.+++... ..++.++.+||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 4578999999999998753211 112222221 2578999999999998643334444554321 12457788887
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
+ ++.|++++++.+.+.+
T Consensus 160 ~----------------------------~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 160 L----------------------------TGEGLCQGLEWMMSRL 176 (187)
T ss_dssp T----------------------------TTBTHHHHHHHHHHHH
T ss_pred C----------------------------CCcCHHHHHHHHHHHH
Confidence 6 5678888888776644
No 173
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.87 E-value=1.7e-05 Score=72.31 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=56.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC---CCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF---PKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~---p~~~vv~~Sa 266 (604)
.+..+|++++|+|+.+|..+.. ..+..++.. ..+.|+|||+||+||.+......+...+.... .++.++.+||
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 143 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEccc
Confidence 4789999999999998743211 122222221 24789999999999977543344444443211 2346777787
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+ ++.|+.++++.+...
T Consensus 144 ~----------------------------~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 144 T----------------------------SGDGLYEGLDWLSNQ 159 (164)
T ss_dssp T----------------------------TTBTHHHHHHHHHHH
T ss_pred C----------------------------CCcCHHHHHHHHHHH
Confidence 6 556888888877653
No 174
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.86 E-value=9.4e-06 Score=73.72 Aligned_cols=86 Identities=26% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCc
Q psy3589 191 LWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTY 270 (604)
Q Consensus 191 lwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~ 270 (604)
....+..+|++|+|+|+.+++......+..++. ..+.|+|+|+||+|+..... ...++. . ++...++.+||+
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~--~~~~~~-~-~~~~~~~~~Sa~--- 144 (161)
T 2dyk_A 73 VDRALEDAEVVLFAVDGRAELTQADYEVAEYLR-RKGKPVILVATKVDDPKHEL--YLGPLY-G-LGFGDPIPTSSE--- 144 (161)
T ss_dssp HHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHH-HHTCCEEEEEECCCSGGGGG--GCGGGG-G-GSSCSCEECBTT---
T ss_pred HHHHHHhCCEEEEEEECCCcccHhHHHHHHHHH-hcCCCEEEEEECcccccchH--hHHHHH-h-CCCCCeEEEecc---
Confidence 345678999999999999986554455656655 35789999999999986532 112222 2 212257788876
Q ss_pred ccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 271 NLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|+.++++.+.+
T Consensus 145 -------------------------~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 145 -------------------------HARGLEELLEAIWE 158 (161)
T ss_dssp -------------------------TTBSHHHHHHHHHH
T ss_pred -------------------------cCCChHHHHHHHHH
Confidence 56788888877655
No 175
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.85 E-value=1.4e-05 Score=86.85 Aligned_cols=75 Identities=16% Similarity=0.325 Sum_probs=55.4
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH--hHHHHHHHHHhhC---CCceEEEEee
Q psy3589 192 WRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP--LVLAWKHYFQSKF---PKLTILCFTS 266 (604)
Q Consensus 192 wrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~--~~~~w~~yf~~~~---p~~~vv~~Sa 266 (604)
.+.++.+|++|+|+|+..++......+..++. ..++|+|||+||+||++.. ......+++...+ .+.+++++||
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 350 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH-EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 350 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHH-HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHH-HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcC
Confidence 45789999999999999988765566666665 4679999999999998643 2334444554443 2467899998
Q ss_pred c
Q psy3589 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
+
T Consensus 351 ~ 351 (456)
T 4dcu_A 351 L 351 (456)
T ss_dssp T
T ss_pred C
Confidence 7
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.85 E-value=1.8e-05 Score=79.37 Aligned_cols=60 Identities=32% Similarity=0.424 Sum_probs=44.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--e-cCCeEEecCCCccCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--L-TDNIRLCDCPGLVFP 425 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~-~~~~~l~D~pGl~~p 425 (604)
..++|+|+|.+|||||||+|.|+|.....++..++.|....... . ...+.++||||+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 35899999999999999999999987655666677665544322 2 235789999998643
No 177
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.84 E-value=1.9e-05 Score=74.32 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=58.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhcc----CCCcEEEEEeCCCCCCHHhHHHHHHHHH-hhC--CCceEEEE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTGT----LGKDMILVMNKIDLAPAPLVLAWKHYFQ-SKF--PKLTILCF 264 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~~----~~K~~ILVlNK~DLv~~~~~~~w~~yf~-~~~--p~~~vv~~ 264 (604)
.+..+|++|+|+|+.++..+.. ..+..++... .++|+|||+||+||........+.+++. ..+ .++.++.+
T Consensus 87 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICAS 166 (190)
T ss_dssp GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEc
Confidence 4578999999999988642211 2222333221 4789999999999987544455555553 221 24677888
Q ss_pred eeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 265 TSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 265 Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
||+ ++.|+.+|++.+...
T Consensus 167 Sa~----------------------------~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 167 DAI----------------------------KGEGLQEGVDWLQDQ 184 (190)
T ss_dssp BTT----------------------------TTBTHHHHHHHHHHH
T ss_pred cCC----------------------------CCcCHHHHHHHHHHH
Confidence 886 567888888877653
No 178
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.84 E-value=1.7e-05 Score=79.02 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCc-ccceeEE--EEe-cCCeEEecCCCccCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-HTKHFQT--IFL-TDNIRLCDCPGLVFPS 426 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g-~t~~~q~--~~~-~~~~~l~D~pGl~~p~ 426 (604)
..++|+|+|.+|||||||+|.|+|......+..+. .|..... +.. ...+.++||||+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 45899999999999999999999976443333333 4444332 222 2357899999987543
No 179
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.80 E-value=3.6e-06 Score=87.96 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSR 397 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~ 397 (604)
...++|+|+||||||||||+|+|...+..|.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~ 85 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHK 85 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCE
Confidence 4679999999999999999999876554443
No 180
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.79 E-value=1.4e-05 Score=85.12 Aligned_cols=58 Identities=33% Similarity=0.436 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEe------------------cCCeEEecCCCccCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFL------------------TDNIRLCDCPGLVFP 425 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~------------------~~~~~l~D~pGl~~p 425 (604)
..++||||.||||||||||+|+|... .++..|++|.... .+.+ ...+.++|+||+...
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 46899999999999999999999864 4666666664322 1221 223789999999753
No 181
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.78 E-value=1.9e-05 Score=88.19 Aligned_cols=62 Identities=29% Similarity=0.290 Sum_probs=42.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCc-ccc-CcCcccceeEEEE------ecCCeEEecCCCccCCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVS-RTPGHTKHFQTIF------LTDNIRLCDCPGLVFPS 426 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g-~i~g~t~~~q~~~------~~~~~~l~D~pGl~~p~ 426 (604)
.+.++|+|+|++|||||||||.|+|.... ..+ .+.+.|+.+.... ....+.++||||+..+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 35578999999999999999999998642 222 2234444443221 23457899999998543
No 182
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.78 E-value=4e-05 Score=83.94 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=63.4
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhH----HHHHHHHHhh--CCCceEE
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLV----LAWKHYFQSK--FPKLTIL 262 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~----~~w~~yf~~~--~p~~~vv 262 (604)
+...+.+..+|++|+|+|+.++...........+. ..+.|.|+|+||+|+++.... ....+++... +++.+++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~-~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILD-HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHH-HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHH-HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 44556788999999999999875322222222232 457888999999999986543 2344455432 2346788
Q ss_pred EEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 263 CFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 263 ~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
++||. .+.|+.+|++.+...+
T Consensus 167 ~vSA~----------------------------~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 167 PISAK----------------------------TGFGVDELKNLIITTL 187 (482)
T ss_dssp ECCTT----------------------------TCTTHHHHHHHHHHHH
T ss_pred EEECc----------------------------CCCCHHHHHHHHHHhh
Confidence 89987 5578888888876643
No 183
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.77 E-value=3e-05 Score=72.75 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=57.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh----hHHHHhhc----cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCc-eEEEE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP----TLYDYVTG----TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKL-TILCF 264 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~----~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~-~vv~~ 264 (604)
.+..+|++|+|+|+.++....+. .+..++.+ ..+.|+|||+||+||.+........+++... +. .++.+
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~ 171 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE--GKFPVLEA 171 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT--CCSCEEEC
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhc--CCceEEEE
Confidence 56789999999999865332222 22333332 2578999999999997654444444555443 34 78888
Q ss_pred eeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 265 TSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 265 Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
||+ .+.|+.++++.+..
T Consensus 172 Sa~----------------------------~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 172 VAT----------------------------EGKGVFETLKEVSR 188 (198)
T ss_dssp BGG----------------------------GTBTHHHHHHHHHH
T ss_pred ecC----------------------------CCcCHHHHHHHHHH
Confidence 886 56778888777655
No 184
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.77 E-value=1.6e-05 Score=75.09 Aligned_cols=89 Identities=11% Similarity=0.088 Sum_probs=57.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhcc---------CCCcEEEEEeCCCCCCHHhHHHHHHHHHh----hCCC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTGT---------LGKDMILVMNKIDLAPAPLVLAWKHYFQS----KFPK 258 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~~---------~~K~~ILVlNK~DLv~~~~~~~w~~yf~~----~~p~ 258 (604)
.+..+|+||+|+|+.++..+.. ..+...+... .+.|+|||+||+||........+...+.. ...+
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC
T ss_pred HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe
Confidence 3678999999999998753211 1222222210 27899999999999877444444444321 1135
Q ss_pred ceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 259 LTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 259 ~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+.++.+||+ .+.|+.++++.+...
T Consensus 163 ~~~~~~Sa~----------------------------~g~gv~~l~~~l~~~ 186 (199)
T 4bas_A 163 FVIFASNGL----------------------------KGTGVHEGFSWLQET 186 (199)
T ss_dssp EEEEECBTT----------------------------TTBTHHHHHHHHHHH
T ss_pred eEEEEeeCC----------------------------CccCHHHHHHHHHHH
Confidence 678888886 556888888777653
No 185
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.76 E-value=1.7e-05 Score=83.65 Aligned_cols=58 Identities=31% Similarity=0.380 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEec-CCeEEecCCCccC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLT-DNIRLCDCPGLVF 424 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~-~~~~l~D~pGl~~ 424 (604)
+...|+|+|+||||||||||+|+|... .++..++.|.+. ..+.+. ..+.+.||+|+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 444599999999999999999999875 455666777554 334443 3467899999864
No 186
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.76 E-value=2e-05 Score=71.48 Aligned_cols=57 Identities=33% Similarity=0.496 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--e-cCCeEEecCCCccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--L-TDNIRLCDCPGLVF 424 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~-~~~~~l~D~pGl~~ 424 (604)
.+++++|++|||||||+|.|.+......+..++.+....... . ...+.++|+||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 479999999999999999999876544555566655443322 2 23567899999853
No 187
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.75 E-value=6.1e-05 Score=73.38 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=56.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCChh---HHHHhhcc-CCCcEEEEEeCCCCCCHHhH-----HHHHHHHHhhCCCceEEEE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPT---LYDYVTGT-LGKDMILVMNKIDLAPAPLV-----LAWKHYFQSKFPKLTILCF 264 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~---L~~yv~~~-~~K~~ILVlNK~DLv~~~~~-----~~w~~yf~~~~p~~~vv~~ 264 (604)
....+|++|+|+|+.++..+.... +...+... .++|+|+|+||+||.+...+ .....+....++...++.+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 357789999999999887543222 23333322 37899999999999865332 1223333333223678888
Q ss_pred eeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 265 TSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 265 Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
||+ .+.|+.+|++.+...
T Consensus 185 SA~----------------------------~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 185 STL----------------------------TGVGVEQAKITACEL 202 (228)
T ss_dssp CTT----------------------------TCTTHHHHHHHHHHH
T ss_pred ecc----------------------------cCCCHHHHHHHHHHH
Confidence 886 556788887776654
No 188
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.75 E-value=3.3e-05 Score=72.20 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=58.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.+|..+.. ..+...+.. ..+.|+|+|+||+||.+........+++... ..+++++.+||
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeC
Confidence 4678999999999988753211 112222221 2478999999999998764444555554321 12456777887
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
+ .+.|+.++++.+.+.+
T Consensus 162 ~----------------------------~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 162 V----------------------------TGEDLLPGIDWLLDDI 178 (186)
T ss_dssp T----------------------------TCTTHHHHHHHHHHHH
T ss_pred C----------------------------CCCCHHHHHHHHHHHH
Confidence 6 4567888887776543
No 189
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.75 E-value=1.6e-05 Score=83.95 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=37.7
Q ss_pred ecCC-CCcccccCCCcCCCCHHHHHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 519 CLMP-PQYLSKQEYWEKHPDIDEILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 519 l~~p-P~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
++.+ |+++||||| |++||......+.++ ..+. .+.+||+|||+...
T Consensus 301 l~~~~~~~lllDEp-~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~~ 348 (371)
T 3auy_A 301 LIGNRVECIILDEP-TVYLDENRRAKLAEIFRKVK-SIPQMIIITHHREL 348 (371)
T ss_dssp HHSSCCSEEEEEST-TTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGGG
T ss_pred HhcCCCCeEEEeCC-CCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHHH
Confidence 3567 999999999 999999999998888 3332 34689999999864
No 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.75 E-value=3.2e-05 Score=73.62 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++++|+|+||||||||++.|+|...... ....+.......+.+.. .+.+.|++|..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCch
Confidence 47899999999999999999999864211 11112111122333333 24567999864
No 191
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.74 E-value=2.5e-05 Score=84.32 Aligned_cols=75 Identities=16% Similarity=0.318 Sum_probs=54.1
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhC---CCceEEEEee
Q psy3589 192 WRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKF---PKLTILCFTS 266 (604)
Q Consensus 192 wrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~---p~~~vv~~Sa 266 (604)
.+.++.+|++|+|+|+.++....+..+..++. ..++++|+|+||+||++... .....+.+...+ .+.+++++||
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~-~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA 330 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH-EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 330 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHH-HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHH-HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEec
Confidence 35789999999999999988765555666665 46799999999999987533 223333333332 3567889998
Q ss_pred c
Q psy3589 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
+
T Consensus 331 ~ 331 (436)
T 2hjg_A 331 L 331 (436)
T ss_dssp T
T ss_pred c
Confidence 7
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.74 E-value=1.3e-05 Score=84.48 Aligned_cols=56 Identities=32% Similarity=0.473 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEec------------------CCeEEecCCCccC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLT------------------DNIRLCDCPGLVF 424 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~------------------~~~~l~D~pGl~~ 424 (604)
++++|||.||||||||+|+|+|.. +.++..|++|.... .+... ..+.++|+||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 589999999999999999999976 44556666554321 22222 3478999999874
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.72 E-value=3.5e-05 Score=73.06 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecCC---eEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTDN---IRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~~---~~l~D~pGl~ 423 (604)
..++++|||+||||||||++.|+|...+.. ..+.+.......+.+... ..+.|++|..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCc
Confidence 347999999999999999999999875421 122222112223333321 3457888864
No 194
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.71 E-value=4.8e-05 Score=71.57 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=57.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+.. ..+..++.. ..+.|+|||+||+||........+.+.+... ..++.++.+||
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 166 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISC 166 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEEC
Confidence 4678999999999987643211 112222221 2578999999999998653334444444321 12456777787
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+ ++.|+.+|++.+...
T Consensus 167 ~----------------------------~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 167 K----------------------------EKDNIDITLQWLIQH 182 (188)
T ss_dssp T----------------------------TCTTHHHHHHHHHHT
T ss_pred C----------------------------CCCCHHHHHHHHHHH
Confidence 6 567888888877654
No 195
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.71 E-value=4.6e-05 Score=69.13 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCcccc-CcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVS-RTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g-~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
++|+|+|++|||||||+|.|.+....... ...+ +.....+.... .+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCch
Confidence 78999999999999999999865432211 1111 11122222332 26789999953
No 196
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.71 E-value=2.5e-05 Score=71.29 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
++|+|+|.+|||||||+|.|+|.........++.+... .+.... .+.+.|+||..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEETTEEEEEEEEECC---
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEECCEEEEEEEEECCCCc
Confidence 68999999999999999999987765555566655432 222222 34678999864
No 197
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.71 E-value=3.2e-05 Score=75.44 Aligned_cols=58 Identities=34% Similarity=0.405 Sum_probs=39.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe---cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL---TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~---~~~~~l~D~pGl~ 423 (604)
....+|+|+|.+|||||||+|.|++.... .+..++.|+....... ...+.++|+||..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLL 87 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCc
Confidence 35689999999999999999999987643 4556666665543322 2346789999985
No 198
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.70 E-value=4.2e-05 Score=69.91 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCC-ccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKV-VSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~-~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+++|++|||||||+|.|.+... .......+.+.....+.... .+.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 47999999999999999999998763 22333444443333333332 36789999973
No 199
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.69 E-value=3.9e-05 Score=71.33 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=57.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~Sa 266 (604)
.+..+|++++|+|+.++..+.. ..+...+.. ..++|+|+|+||+||.+......+.+++... ..+..++.+||
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 161 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 161 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccC
Confidence 3568999999999988743211 112233322 2578999999999998754444455554321 12346788888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
. ++.|+.++++.+.+.
T Consensus 162 ~----------------------------~~~gi~~l~~~l~~~ 177 (183)
T 1moz_A 162 I----------------------------KGEGITEGLDWLIDV 177 (183)
T ss_dssp G----------------------------GTBTHHHHHHHHHHH
T ss_pred C----------------------------CCcCHHHHHHHHHHH
Confidence 6 567888888777553
No 200
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.69 E-value=7.7e-05 Score=68.85 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=54.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC-------CCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF-------PKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~-------p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..........++. ..+.|+|+|+||+||.+.. ......++.... ..+.++.+||
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAK-AANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHG-GGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHH-hCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 356799999999998876433333333333 3478999999999998642 122233332211 1246788888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
+ ++.|+.+|++.+..
T Consensus 153 ~----------------------------~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 153 K----------------------------TKEGLDHLLEMILL 167 (178)
T ss_dssp S----------------------------SSHHHHHHHHHHHH
T ss_pred C----------------------------CCCCHHHHHHHHHH
Confidence 6 55788888877655
No 201
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.69 E-value=1.2e-05 Score=84.12 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCC-----CCCCChhHHHHhhc----cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhC
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYP-----CLMFPPTLYDYVTG----TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKF 256 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~P-----l~~~~~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~ 256 (604)
++.+..+.++++|++|+|+|+.++ +... ..+...+.. ...+|+|||+||+|+..... ...+.+.+..
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-- 302 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-- 302 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS--
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc--
Confidence 456667888999999999999652 2111 112222221 24799999999999987643 3333333321
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
...++.+||. ++.|+++|++.+...+
T Consensus 303 -~~~v~~iSA~----------------------------tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 303 -DYPVFPISAV----------------------------TREGLRELLFEVANQL 328 (342)
T ss_dssp -CCCBCCCSSC----------------------------CSSTTHHHHHHHHHHH
T ss_pred -CCCEEEEECC----------------------------CCcCHHHHHHHHHHHH
Confidence 1456778886 4567888888876654
No 202
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.69 E-value=3.6e-05 Score=71.89 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=46.2
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+.. ..+..++.. ..++|+|||+||+||........+.+++... ..++.++.+||
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccC
Confidence 4678999999999998753211 112223322 2578999999999997643334444444221 12356777887
Q ss_pred c
Q psy3589 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
+
T Consensus 165 ~ 165 (181)
T 2h17_A 165 L 165 (181)
T ss_dssp T
T ss_pred C
Confidence 6
No 203
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.69 E-value=5.1e-05 Score=69.06 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=55.2
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
.+..+|++++|+|+.++..+.. ..+...+.. ..++|+|+|+||+||.+.... ......+...+++..++.+||.
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~- 149 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK- 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT-
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCC-
Confidence 3456999999999988643222 112222221 347899999999999754221 1122233334445788888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|++++++.+.+
T Consensus 150 ---------------------------~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 150 ---------------------------SKINVNEIFYDLVR 163 (167)
T ss_dssp ---------------------------TTBSHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHH
Confidence 56678888877654
No 204
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.69 E-value=6.5e-05 Score=76.96 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCcccc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVS 396 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g 396 (604)
.-.++|+|+|||||||++..|++...+..|
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 357999999999999999999998765333
No 205
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.68 E-value=0.0001 Score=77.43 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
.+|+|||.+|||||||||+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999953
No 206
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.68 E-value=1.5e-05 Score=75.62 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
.++|+||||||||||+++|+|+.++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 48999999999999999999998643
No 207
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.68 E-value=2.1e-05 Score=84.07 Aligned_cols=36 Identities=39% Similarity=0.573 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccce
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH 404 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~ 404 (604)
++|+|||.||||||||+|+|+|.. ..++..|++|..
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~ 36 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIE 36 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccC
Confidence 479999999999999999999987 556677777754
No 208
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.68 E-value=1e-05 Score=75.41 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=58.1
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEee
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
++.|..+..+|++|+|+|+.++..+....+...+.. ..++|+|+|+||+||..... .| .. . .+..++.+||
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~---~~-~-~~~~~~~~SA 147 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM---SE-V-NGHALIRLSA 147 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE---EE-E-TTEEEEECCT
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh---hh-c-cCCceEEEeC
Confidence 345667789999999999998876543333333332 23689999999999954311 11 11 1 2456778887
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+ ++.|+++|++.+.+.
T Consensus 148 ~----------------------------~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 148 R----------------------------TGEGVDVLRNHLKQS 163 (172)
T ss_dssp T----------------------------TCTTHHHHHHHHHHH
T ss_pred C----------------------------CCCCHHHHHHHHHHH
Confidence 6 567888888877664
No 209
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.67 E-value=4.4e-05 Score=69.65 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
++|+++|++|||||||+|.|.+.... ....+.+.+.....+.... .+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 68999999999999999999976532 2223333333333333333 46789999953
No 210
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.67 E-value=5.9e-05 Score=71.46 Aligned_cols=88 Identities=10% Similarity=0.048 Sum_probs=56.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC---CCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF---PKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~---p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+.. ..+..++.. ..+.|+|||+||+||.+......+...+.... .++.++.+||
T Consensus 93 ~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA 172 (192)
T 2b6h_A 93 YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCA 172 (192)
T ss_dssp HHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcC
Confidence 4578999999999988743211 112222221 24789999999999977544444555443221 2356777887
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
. ++.|+.++++.+..
T Consensus 173 ~----------------------------~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 173 T----------------------------QGTGLYDGLDWLSH 187 (192)
T ss_dssp T----------------------------TTBTHHHHHHHHHH
T ss_pred C----------------------------CcCCHHHHHHHHHH
Confidence 6 56688888877755
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.66 E-value=7.1e-05 Score=80.89 Aligned_cols=91 Identities=14% Similarity=0.229 Sum_probs=64.8
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhC---CCceEEEEe
Q psy3589 191 LWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKF---PKLTILCFT 265 (604)
Q Consensus 191 lwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~---p~~~vv~~S 265 (604)
....++.+|++++|+|+..+.......+..++. ..++++|+|+||+||+.... ...+.+.+...+ .+.+++++|
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 335 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLME-RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTS 335 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHH-HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECB
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 456788999999999999887654444555554 46799999999999987543 344444443322 246788888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|. ++.|+.+|++.+...
T Consensus 336 A~----------------------------~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 336 AD----------------------------KGWNIDRMIDAMNLA 352 (439)
T ss_dssp TT----------------------------TTBSHHHHHHHHHHH
T ss_pred CC----------------------------CCCCHHHHHHHHHHH
Confidence 86 567888888877653
No 212
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.66 E-value=9.2e-05 Score=71.13 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=55.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHhhc---c---CCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYVTG---T---LGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~---~---~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~S 265 (604)
..+..+|++|+|+|+.++..+ ..+..++.. . .++|+|||+||+||.+...+ ......|...+ ++.++.+|
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 179 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY-GIPYFETS 179 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCCEEEEB
T ss_pred HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHC-CCcEEEEE
Confidence 456889999999999876432 223344432 1 46899999999999753221 11222232333 46788888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|. .+.|+.++++.+...
T Consensus 180 a~----------------------------~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 180 AA----------------------------TGQNVEKAVETLLDL 196 (217)
T ss_dssp TT----------------------------TTBTHHHHHHHHHHH
T ss_pred CC----------------------------CCCCHHHHHHHHHHH
Confidence 86 556788887776553
No 213
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.66 E-value=2.8e-05 Score=71.09 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=54.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEeecc
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|+|+||+||..... ......+.... ++.++.+||.
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~Sa~- 147 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL--GIPFIESSAK- 147 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH--TCCEEECBTT-
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc--CCeEEEEECC-
Confidence 35678999999999987753211 112222222 24789999999999954322 12222333333 3578888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.++++.+...
T Consensus 148 ---------------------------~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 148 ---------------------------NDDNVNEIFFTLAKL 162 (170)
T ss_dssp ---------------------------TTBSHHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHHH
Confidence 556788888777654
No 214
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.66 E-value=1.2e-05 Score=80.74 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=56.8
Q ss_pred hhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccccc
Q psy3589 196 EMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNN 275 (604)
Q Consensus 196 E~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~~~ 275 (604)
..+|+||+|+|+.++ .....+..++. ..++|+|+|+||+|++...........+...+ +++++++||.
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~-~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~SA~-------- 149 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLF-ELGKPVVVALNMMDIAEHRGISIDTEKLESLL-GCSVIPIQAH-------- 149 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHT-TSCSCEEEEEECHHHHHHTTCEECHHHHHHHH-CSCEEECBGG--------
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHH-HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-CCCEEEEECC--------
Confidence 789999999999874 22333444554 45799999999999976542211122233333 4688999987
Q ss_pred cccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 276 IENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.+|++.+.+.
T Consensus 150 --------------------~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 --------------------KNIGIPALQQSLLHC 164 (256)
T ss_dssp --------------------GTBSHHHHHHHHHTC
T ss_pred --------------------CCCCHHHHHHHHHhh
Confidence 567888888888764
No 215
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.65 E-value=6.9e-05 Score=68.24 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+++|++|||||||+|.|.+..... ...+.+.......+.... .+.++|+||..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcH
Confidence 34799999999999999999999764321 122222222222233332 46788999964
No 216
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.65 E-value=4.2e-05 Score=71.80 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=55.7
Q ss_pred hhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEeec
Q psy3589 195 LEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFTSY 267 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~Sa~ 267 (604)
+..+|++|+|+|+.+|..+.. ..+..++.. ..++|+|+|+||+||.+......+.+.+... ..++.++.+||.
T Consensus 87 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 166 (189)
T 2x77_A 87 FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSK 166 (189)
T ss_dssp STTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCC
Confidence 458999999999998853211 123333332 1478999999999998763333444433211 123467778876
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
++.|+.++++.+.+.
T Consensus 167 ----------------------------~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 167 ----------------------------TGDGLVEGMDWLVER 181 (189)
T ss_dssp ----------------------------TCTTHHHHHHHHHHH
T ss_pred ----------------------------CccCHHHHHHHHHHH
Confidence 456788887776553
No 217
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.65 E-value=3.9e-05 Score=83.85 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=59.4
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCCh-hHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPP-TLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
+..+..+..+|+||+|+|+.++..+... ....++..-.++|+|+|+||+||.+...... +.+... +..+++.+||+
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAk 380 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISAL 380 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTT
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEEC
Confidence 4456678999999999999998754210 2222222223789999999999987655432 223332 11467888887
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
++.|+++|++.+.+.+
T Consensus 381 ----------------------------tg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 381 ----------------------------NGDGIDTLKQHMGDLV 396 (476)
T ss_dssp ----------------------------TTBSHHHHHHHHTHHH
T ss_pred ----------------------------CCCCHHHHHHHHHHHH
Confidence 5678888888776654
No 218
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.64 E-value=6.7e-05 Score=68.13 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+++|.+|||||||+|.|.+...... ..+.+... ...+.... .+.++|+||..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcc
Confidence 37899999999999999999997653211 11111111 11223333 46789999953
No 219
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.63 E-value=3.6e-05 Score=72.22 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=55.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..++|+|||+||+||...... .....+.... ++.++.+||+
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 160 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH--SMLFIEASAK 160 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT--TCEEEECCTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc--CCEEEEecCC
Confidence 35678999999999988753322 112222322 136899999999999643221 2223333333 4678888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
++.|+.++++.+.+.
T Consensus 161 ----------------------------~~~gi~~l~~~l~~~ 175 (195)
T 1x3s_A 161 ----------------------------TCDGVQCAFEELVEK 175 (195)
T ss_dssp ----------------------------TCTTHHHHHHHHHHH
T ss_pred ----------------------------CCCCHHHHHHHHHHH
Confidence 556888888777653
No 220
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.63 E-value=4.3e-05 Score=72.27 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=46.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc--cCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG--TLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||.+...+ ......|...+.+..++.+||+
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 346789999999999887543221 12222222 246899999999999754221 1122333344345778888886
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.62 E-value=2e-05 Score=82.62 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
....|+|+|+||||||||||.|+|..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999753
No 222
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.62 E-value=5.6e-05 Score=69.71 Aligned_cols=57 Identities=25% Similarity=0.312 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGL 422 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl 422 (604)
..++|+|+|++|||||||+|.|++.... ......+.+.....+.... .+.++|+||.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3479999999999999999999976432 1112222222222333333 4678999995
No 223
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.61 E-value=5.8e-05 Score=69.88 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=57.3
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|+|+||+||.+... ......+.... ++.++.+||+
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 157 (181)
T 2efe_B 80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN--GLFFMETSAK 157 (181)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCEEEECCSS
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc--CCEEEEEECC
Confidence 34678999999999987653211 112222222 24688999999999975432 23344444443 4678888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+.++++.+...+
T Consensus 158 ----------------------------~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 158 ----------------------------TATNVKEIFYEIARRL 173 (181)
T ss_dssp ----------------------------SCTTHHHHHHHHHHTC
T ss_pred ----------------------------CCCCHHHHHHHHHHHH
Confidence 5578888888776643
No 224
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.61 E-value=8.7e-06 Score=82.43 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=57.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLR 273 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~ 273 (604)
..+.+|+||+|+|+.++- ....+..++. ..+.|+|+|+||+|+............+...+ +++++++||.
T Consensus 82 ~~~~~d~ii~VvD~~~~~--~~~~~~~~l~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~i~~SA~------ 151 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLE--RNLYLTLQLL-ELGIPCIVALNMLDIAEKQNIRIEIDALSARL-GCPVIPLVST------ 151 (274)
T ss_dssp HHTCCSEEEEEEEGGGHH--HHHHHHHHHH-HHTCCEEEEEECHHHHHHTTEEECHHHHHHHH-TSCEEECCCG------
T ss_pred hhcCCCEEEEEecCCChH--HHHHHHHHHH-hcCCCEEEEEECccchhhhhHHHHHHHHHHhc-CCCEEEEEcC------
Confidence 457899999999998732 2233334444 34789999999999975432111112232332 3678999986
Q ss_pred cccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 274 NNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
.+.|+.+|++.+...++
T Consensus 152 ----------------------~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 152 ----------------------RGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ----------------------GGHHHHHHHHHHHTCCC
T ss_pred ----------------------CCCCHHHHHHHHHHHHh
Confidence 66789999988877554
No 225
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.61 E-value=7.2e-05 Score=69.67 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=34.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|++|||||||+|.|++..... ....++... ..+.... .+.++|+||..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC--CCCTTCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCchheEEEEEEECCcEEEEEEEECCCcH
Confidence 4799999999999999999999765322 122222211 1222222 24578999964
No 226
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.61 E-value=3.1e-05 Score=84.27 Aligned_cols=88 Identities=25% Similarity=0.300 Sum_probs=60.6
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeecc
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
+..+..+..+|+||+|+|+.+|.......+...+. .+|+|+|+||+||.+..... .+.......+++.+||+
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~---~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAk- 366 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK---HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAA- 366 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT---TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTT-
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc---CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECC-
Confidence 44566788999999999999987655555555554 47999999999998765432 11111123568889987
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
++.|+++|++.+.+.+
T Consensus 367 ---------------------------tg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 367 ---------------------------QKQGIDSLETAILEIV 382 (462)
T ss_dssp ---------------------------TTBSHHHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHHHH
Confidence 5678888888877654
No 227
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.61 E-value=8.4e-05 Score=68.45 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=46.0
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHH---hhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDY---VTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~y---v~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~S 265 (604)
..+..+|++|+|+|+.++..+. .+..+ +.. ..+.|+|+|+||+||..... .....++.... ++.++.+|
T Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 158 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN--GLLFLEAS 158 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECC
T ss_pred HHhccCCEEEEEEeCcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEEe
Confidence 3567899999999998875332 22222 221 25789999999999965322 23334444443 46788888
Q ss_pred ec
Q psy3589 266 SY 267 (604)
Q Consensus 266 a~ 267 (604)
|+
T Consensus 159 a~ 160 (179)
T 1z0f_A 159 AK 160 (179)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 228
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.60 E-value=0.00012 Score=78.45 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=62.5
Q ss_pred HHHHHHhhhcCEEEEEEecCCCC-CCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh----HHHHHHHHHhh-CCCceEE
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPC-LMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL----VLAWKHYFQSK-FPKLTIL 262 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl-~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~----~~~w~~yf~~~-~p~~~vv 262 (604)
+...+.+..+|++|+|+||.++. ..........+.....+|+|+|+||+|+++... ...+.+|+... ..+++++
T Consensus 98 ~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i 177 (410)
T 1kk1_A 98 TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPII 177 (410)
T ss_dssp HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEE
T ss_pred HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEE
Confidence 34556678999999999999874 111111111222122368999999999998653 33455565532 1246788
Q ss_pred EEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 263 CFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 263 ~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
++||+ .+.|+.+|++.+...++
T Consensus 178 ~vSA~----------------------------~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 178 PISAL----------------------------HGANIDVLVKAIEDFIP 199 (410)
T ss_dssp ECBTT----------------------------TTBSHHHHHHHHHHHSC
T ss_pred EeeCC----------------------------CCCCHHHHHHHHHHhCC
Confidence 99987 56788899998877544
No 229
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.60 E-value=2.1e-05 Score=75.49 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
..++|+||||||||||+++|+|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3689999999999999999999864
No 230
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.60 E-value=5.1e-05 Score=69.47 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|.+........+.+. ....+.. ...+.++|+||..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF--NVETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSE--EEEEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCcc--ceEEEEECCEEEEEEECCCCh
Confidence 347999999999999999999987554322222222 1222222 2346789999964
No 231
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.60 E-value=4.3e-05 Score=71.58 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec-CCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT-DNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~-~~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||++.|.+........+.|.+ ...+... ..+.+.|+||..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEECCEEEEEEECCCCH
Confidence 4589999999999999999999987543333333322 1122222 245778999863
No 232
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.59 E-value=7.2e-05 Score=69.82 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=56.1
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEee
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|+|+||+||.+... .....++.... ++.++.+||
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 166 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY--GIPYFETSA 166 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCCEEECCT
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc--CCCEEEEEC
Confidence 45789999999999988754322 122222221 14789999999999975321 12233333333 357888888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
. .+.|+.++++.+...
T Consensus 167 ~----------------------------~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 167 A----------------------------NGTNISHAIEMLLDL 182 (195)
T ss_dssp T----------------------------TCTTHHHHHHHHHHH
T ss_pred C----------------------------CCCCHHHHHHHHHHH
Confidence 6 456778887776553
No 233
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.59 E-value=2.4e-05 Score=85.52 Aligned_cols=59 Identities=32% Similarity=0.534 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEec-CCeEEecCCCccC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFLT-DNIRLCDCPGLVF 424 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~~-~~~~l~D~pGl~~ 424 (604)
..++|+|+|++|||||||+|.|+|.....++.++++|.+... +.+. ..+.++||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 347899999999999999999999876667788888877532 3332 2478899999864
No 234
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.58 E-value=7.2e-05 Score=68.28 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|++|||||||+|.|++.... ....+..+..+ ..+.... .+.++|+||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 478999999999999999999976532 11122222222 2333332 35778999964
No 235
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.57 E-value=6e-05 Score=70.75 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
++|+|+|++|||||||+|.|+|...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999999743
No 236
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.57 E-value=9.4e-05 Score=68.11 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|.+..... ...+.+.+.....+.... .+.++|+||..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 45899999999999999999999765321 122223333333333333 46788999953
No 237
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.57 E-value=0.0001 Score=67.16 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|.+|||||||+|.|++.... ......+.+.....+.... .+.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 479999999999999999999965432 1222333333333333332 36788999953
No 238
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.57 E-value=7.7e-05 Score=68.84 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++.... ....+..+... ..+.... .+.++|+||..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 4589999999999999999999987543 22233333322 2333333 36778999964
No 239
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.57 E-value=2.9e-05 Score=82.03 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEE----------------------ecCCeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIF----------------------LTDNIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~----------------------~~~~~~l~D~pGl~ 423 (604)
+++||||.||||||||+|+|++.. +.++..+++|... .... ....+.++|+||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 469999999999999999999874 4455566655321 1111 12347899999997
Q ss_pred CC
Q psy3589 424 FP 425 (604)
Q Consensus 424 ~p 425 (604)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 240
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.56 E-value=0.0001 Score=68.12 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~~---~~~l~D~pGl~ 423 (604)
+..++|+|+|.+|||||||+|.|++.........+..+..+. .+.... .+.++|+||..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 455899999999999999999999866432222333333332 222332 46788999964
No 241
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.56 E-value=6.9e-05 Score=68.40 Aligned_cols=89 Identities=12% Similarity=0.004 Sum_probs=56.3
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeecc
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
..+..+|++++|+|+.++..+.. ..+...+.. ....|+++|+||+||.+.... ......|...+ +..++.+||.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~- 151 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI-HAIFVETSAK- 151 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECBTT-
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc-CCEEEEEeCC-
Confidence 35678999999999988753221 122223322 346789999999999764321 22233333333 4678888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.+|++.+.+.
T Consensus 152 ---------------------------~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 152 ---------------------------NAININELFIEISRR 166 (170)
T ss_dssp ---------------------------TTBSHHHHHHHHHHH
T ss_pred ---------------------------CCcCHHHHHHHHHHH
Confidence 556788888877653
No 242
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=8.4e-05 Score=70.15 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCC-ccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKV-VSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~-~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++... .....+.+.+.....+.... .+.++|+||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 458999999999999999999997653 23344445444444443332 36788999953
No 243
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.55 E-value=9.7e-05 Score=67.19 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+++|.+|||||||+|.|.+...... ..+.+... ...+.... .+.+.|+||..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChH
Confidence 37899999999999999999997543211 11111111 11222222 35789999964
No 244
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.54 E-value=0.00011 Score=66.42 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
++|+++|++|||||||+|.|++...... ....+. .....+.... .+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCch
Confidence 6899999999999999999997643211 111111 1112222222 25678999964
No 245
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.54 E-value=1.7e-05 Score=86.76 Aligned_cols=57 Identities=33% Similarity=0.542 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEec-CCeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLT-DNIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~-~~~~l~D~pGl~ 423 (604)
.++|+|||++|||||||||.|+|...+.++.++++|.+.. .+.+. ..+.++||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 3799999999999999999999987666788899887653 23332 346889999986
No 246
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.54 E-value=8.2e-05 Score=70.07 Aligned_cols=89 Identities=11% Similarity=0.130 Sum_probs=55.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc----cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG----TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+..........+...+ ++.++.+||.
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~- 153 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-KCAFMETSAK- 153 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH-TCEEEECBTT-
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh-CCeEEEEecC-
Confidence 3567999999999987643222 122222221 13679999999999976432222222222222 3577888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+.+|++.+...+
T Consensus 154 ---------------------------~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 154 ---------------------------MNYNVKELFQELLTLE 169 (199)
T ss_dssp ---------------------------TTBSHHHHHHHHHHHC
T ss_pred ---------------------------CCCCHHHHHHHHHHHH
Confidence 5678888888877654
No 247
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.54 E-value=0.0001 Score=69.13 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=46.0
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHH---hhccCCCcEEEEEeCCCCCCH-HhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDY---VTGTLGKDMILVMNKIDLAPA-PLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~y---v~~~~~K~~ILVlNK~DLv~~-~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++|+|+|+.+|..+ ..+..+ +....+.|+|+|+||+|+... .......+++... ++.++.+||.
T Consensus 112 ~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 186 (208)
T 3clv_A 112 LYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDN--NLLFIQTSAK 186 (208)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHT--TCEEEEECTT
T ss_pred HHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHc--CCcEEEEecC
Confidence 457899999999999987532 222223 222345899999999994221 1234445555554 4688889987
No 248
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.54 E-value=0.00016 Score=77.38 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=55.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCChhHH--HHhhccCCCcEEEEEeCCCCCCHH----hHHHHHHHHHhh-CCCceEEE
Q psy3589 191 LWRVLEMSDIILIIIDIRYPCLMFPPTLY--DYVTGTLGKDMILVMNKIDLAPAP----LVLAWKHYFQSK-FPKLTILC 263 (604)
Q Consensus 191 lwrviE~sDiVl~VvDaR~Pl~~~~~~L~--~yv~~~~~K~~ILVlNK~DLv~~~----~~~~w~~yf~~~-~p~~~vv~ 263 (604)
..+.+..+|++|+|+|+.++.. .....+ ..+.....+|+|+|+||+||++.. ....+.+++... ..++++++
T Consensus 98 ~~~~~~~~D~~ilVvda~~g~~-~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~ 176 (408)
T 1s0u_A 98 MLSGASLMDGAILVIAANEPCP-QPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIP 176 (408)
T ss_dssp HHTTCSCCSEEEEEEETTSCSS-CHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEE
T ss_pred HHHhHhhCCEEEEEEECCCCCC-CchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEE
Confidence 3455678999999999998751 111111 122212235899999999998754 234455555532 13467889
Q ss_pred EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 264 FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 264 ~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
+||+ .+.|+.+|++.+...++
T Consensus 177 vSA~----------------------------~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 177 ISAH----------------------------HEANIDVLLKAIQDFIP 197 (408)
T ss_dssp C----------------------------------CHHHHHHHHHHHSC
T ss_pred eeCC----------------------------CCCCHHHHHHHHHHhCC
Confidence 9987 56788899988876443
No 249
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.54 E-value=0.0001 Score=68.12 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=44.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+... ......+.... ++.++.+||.
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 156 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY--GLPFMETSAK 156 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH--TCCEEECCTT
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc--CCeEEEEeCC
Confidence 4578999999999988754322 111222221 24789999999999986421 12223333333 3578888886
No 250
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.54 E-value=0.00014 Score=66.29 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCcc--ccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVS--VSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~--~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+++|++|||||||+|.|++..... ...+...+. ..+.... .+.++|+||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR--QVISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE--EEEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE--EEEEECCEEEEEEEEECCCch
Confidence 3789999999999999999999854321 111111111 1122222 35789999964
No 251
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.54 E-value=8.3e-05 Score=76.43 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEE--ecC--CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF--LTD--NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~--~~~--~~~l~D~pGl~ 423 (604)
.++|+|+|.+|||||||+|.+.+...+..+..++.|....... +.. .+.+.|+||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 4789999999999999999999886665666677776554332 222 35789999974
No 252
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.52 E-value=6.7e-05 Score=69.25 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~-~~~~~l~D~pGl~ 423 (604)
....+|+|+|.+|||||||+|.|++.... .+..++.+..+ ..+.. ...+.++|+||..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 34578999999999999999999986533 22233333222 12222 2346789999964
No 253
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.52 E-value=2.8e-05 Score=84.82 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT 402 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t 402 (604)
-.+||+|+|||||||||++|+|+..++.|.+...+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 46899999999999999999999999888875443
No 254
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.52 E-value=6.6e-05 Score=71.31 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=54.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc------cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEe
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG------TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~------~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~S 265 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||..... ......+... ..++.++.+|
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S 155 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-KNNIPYFETS 155 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH-TTSCCEEECB
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh-cCCceEEEEe
Confidence 35679999999999887533221 11111111 13689999999999975332 2223333332 2356788888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|+ .+.|+.++++.+...
T Consensus 156 a~----------------------------~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 156 AK----------------------------EAINVEQAFQTIARN 172 (207)
T ss_dssp TT----------------------------TTBSHHHHHHHHHHH
T ss_pred CC----------------------------CCCCHHHHHHHHHHH
Confidence 86 556788888777553
No 255
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.52 E-value=0.00013 Score=68.32 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~S 265 (604)
..+..+|++++|+|+.++..+.. ..+..++.. ..+.|+|+|+||+||.+........+++... ..+..++.+|
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCS 158 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEcc
Confidence 35678999999999987643211 122333322 2468999999999998654444444443221 1235677778
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|. ++.|+.++++.+.+.
T Consensus 159 a~----------------------------~g~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 159 AL----------------------------TGEGVQDGMNWVCKN 175 (181)
T ss_dssp TT----------------------------TCTTHHHHHHHHHHT
T ss_pred CC----------------------------CCCCHHHHHHHHHHH
Confidence 76 567888888877653
No 256
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.52 E-value=0.00014 Score=66.49 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++..... ...+..+..+ ..+.... .+.+.|+||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 34799999999999999999999764321 1122222222 2233332 35677999953
No 257
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.51 E-value=9.2e-05 Score=70.52 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=54.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh--------------
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK-------------- 255 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~-------------- 255 (604)
.+..+|++|+|+|+.++-.+.. ..+..++.. ..++|+|+|+||+||..........+++...
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 3568999999999988743211 122223221 2578999999999997522223333444321
Q ss_pred -CCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 256 -FPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 256 -~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
.....++.+||+ ++.|++++++.+..
T Consensus 169 ~~~~~~~~~~SA~----------------------------~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 169 NARPLEVFMCSVL----------------------------KRQGYGEGFRWMAQ 195 (198)
T ss_dssp CSCCEEEEECBTT----------------------------TTBSHHHHHHHHHT
T ss_pred cCceEEEEEEECC----------------------------CCCCHHHHHHHHHH
Confidence 124567778876 56788888877654
No 258
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.51 E-value=8.5e-05 Score=69.37 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec-CCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT-DNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~-~~~~l~D~pGl~ 423 (604)
..++|+++|++|||||||+|.|.+........+.+.+ ...+... ..+.+.|+||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEECCEEEEEEECCCCH
Confidence 4589999999999999999999987632222222322 2222222 346789999973
No 259
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.51 E-value=8.6e-05 Score=68.57 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEec----CCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLT----DNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~----~~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++.... ......+.+.....+... ..+.++|+||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 4589999999999999999999876532 111222222222233332 135788999953
No 260
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.51 E-value=0.00011 Score=70.70 Aligned_cols=72 Identities=7% Similarity=-0.045 Sum_probs=43.5
Q ss_pred hhhcCEEEEEEecCCCCCCCCh-hHHHHhhc--cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEeec
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPP-TLYDYVTG--TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~--~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
+..+|++|+|+|+.++..+... .+...+.. ..++|+|||+||+||..... .......+.... +..++.+||+
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 157 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGK-NYEYFEISAK 157 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTC-CCEEEEEBTT
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCcEEEEecC
Confidence 5669999999999887543221 11122221 23589999999999987532 222333333333 5788899987
No 261
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.50 E-value=0.00014 Score=66.43 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcc-cceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGH-TKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~-t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|++|||||||+|.|++.........+.. ......+.... .+.+.|+||..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 62 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCcc
Confidence 47899999999999999999997654322222111 11112222332 34578999874
No 262
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.50 E-value=0.00013 Score=67.46 Aligned_cols=58 Identities=24% Similarity=0.262 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcccc-CcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVS-RTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g-~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++....... ...+.+.....+.... .+.++|+||..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 4579999999999999999999976543211 1222222223333332 46789999953
No 263
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.50 E-value=0.00011 Score=69.78 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCC-ccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKV-VSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~-~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++... .....+.+.+.....+.+.. .+.++|+||..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 458999999999999999999997653 22233334333333333333 36789999953
No 264
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.50 E-value=0.00013 Score=67.58 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccc-e-eEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK-H-FQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~-~-~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++..... ....++. . ...+.... .+.++|+||..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC--cCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 35899999999999999999999765321 1111111 1 11223333 46789999953
No 265
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.50 E-value=3.6e-05 Score=83.75 Aligned_cols=58 Identities=33% Similarity=0.475 Sum_probs=39.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEec-CCeEEecCCCccC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLT-DNIRLCDCPGLVF 424 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~-~~~~l~D~pGl~~ 424 (604)
.++|+|+|++|||||||+|.|+|.....++.++++|.+.. .+.+. ..+.++||||+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 4789999999999999999999976555677788877652 22222 3467899999853
No 266
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.49 E-value=0.00014 Score=68.83 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|.+..... ...+.+... ...+.... .+.++|+||..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChh
Confidence 45899999999999999999999765321 111111111 12223333 46789999953
No 267
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.49 E-value=0.00012 Score=68.80 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..++|+|+|++|||||||+|.|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45899999999999999999999875
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=4.3e-05 Score=71.99 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTK 403 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~ 403 (604)
..++|+||||||||||+++|++..++ ..+.+..+|+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr 42 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR 42 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCC
Confidence 36899999999999999999998753 3445544443
No 269
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.48 E-value=0.00021 Score=76.34 Aligned_cols=78 Identities=9% Similarity=0.149 Sum_probs=50.4
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCc-EEEEEeCCCCCC-HHhH----HHHHHHHHhhC---CCc
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKD-MILVMNKIDLAP-APLV----LAWKHYFQSKF---PKL 259 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~-~ILVlNK~DLv~-~~~~----~~w~~yf~~~~---p~~ 259 (604)
+...+.+..+|++|+|+|+.++.......+..++. ..+.| +|+|+||+|+++ .... ....+++.... ..+
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~-~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLAR-QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHH-HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 44556788999999999999876433323333333 35677 789999999985 3221 23344554432 136
Q ss_pred eEEEEeec
Q psy3589 260 TILCFTSY 267 (604)
Q Consensus 260 ~vv~~Sa~ 267 (604)
+++++||+
T Consensus 169 ~~i~~SA~ 176 (405)
T 2c78_A 169 PVIRGSAL 176 (405)
T ss_dssp CEEECCHH
T ss_pred CEEEccHH
Confidence 78889986
No 270
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.48 E-value=0.00018 Score=67.52 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGL 422 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl 422 (604)
..++|+|+|.+|||||||+|.|++..... .....+.+.....+.... .+.++|+||.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 45899999999999999999998654321 122222222223333333 4678999995
No 271
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.48 E-value=6.6e-05 Score=69.76 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
...++|+|+|++|||||||+|.|.+........+.+.. ...+.. ...+.+.|+||..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETTEEEEEEEEC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECCEEEEEEECCCCH
Confidence 35689999999999999999999965443333333322 222333 2346789999975
No 272
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.48 E-value=0.0001 Score=67.79 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=55.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
.+..+|++|+|+|+.+|..+.. ..+...+.. ..+.|+|+|+||+||.+... ......+.... ++.++.+||.
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~- 159 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL--NVMFIETSAK- 159 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEEEBTT-
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc--CCeEEEEeCC-
Confidence 4568999999999987643221 111122221 24689999999999975432 23333444443 4678888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.++++.+...
T Consensus 160 ---------------------------~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 160 ---------------------------AGYNVKQLFRRVAAA 174 (179)
T ss_dssp ---------------------------TTBSHHHHHHHHHHT
T ss_pred ---------------------------CCCCHHHHHHHHHHH
Confidence 556788888877654
No 273
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.48 E-value=0.00013 Score=68.43 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||+|.|.+........+.+.+. ..+.. ...+.+.|+||..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINNTRFLMWDIGGQE 71 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETTEEEEEEECCC--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECCEEEEEEECCCCH
Confidence 345899999999999999999999765443333333222 22222 2346789999974
No 274
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.48 E-value=0.00015 Score=69.09 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++.... ....+..+..+ ..+.... .+.++|+||..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4589999999999999999999976532 11222223222 2333333 46789999964
No 275
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.47 E-value=8.3e-05 Score=70.30 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=45.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh----------CCCc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK----------FPKL 259 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~----------~p~~ 259 (604)
.+..+|++++|+|+.++..+.. ..+...+.. ..+.|+|+|+||+||..........+++... ...+
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV 166 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCE
T ss_pred HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceE
Confidence 3568999999999998753211 112222221 2578999999999997633334444444321 1345
Q ss_pred eEEEEeec
Q psy3589 260 TILCFTSY 267 (604)
Q Consensus 260 ~vv~~Sa~ 267 (604)
.++.+||+
T Consensus 167 ~~~~~Sa~ 174 (190)
T 1m2o_B 167 EVFMCSVV 174 (190)
T ss_dssp EEEECBTT
T ss_pred EEEEeECC
Confidence 67778876
No 276
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.47 E-value=0.00016 Score=66.55 Aligned_cols=56 Identities=25% Similarity=0.410 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|++|||||||+|.|++..... ...+..+..+ ..+.... .+.++|+||..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 4799999999999999999998654321 1122222222 2233333 46788999953
No 277
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.47 E-value=0.00015 Score=67.30 Aligned_cols=57 Identities=26% Similarity=0.247 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCC-ccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKV-VSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~-~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++... .....+.+.+. ...+.... .+.++|+||..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCch
Confidence 347999999999999999999995432 22222222222 22223332 34689999975
No 278
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.47 E-value=0.00013 Score=75.89 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=60.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhC---CCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKF---PKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~---p~~~vv~~S 265 (604)
..+..+|+||+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||........+...+...+ .++.++.+|
T Consensus 228 ~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEE
Confidence 45778999999999987654321 122333332 13789999999999987655555555554332 245678888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|+ ++.|+++|++.+...
T Consensus 308 Ak----------------------------~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 308 AT----------------------------SGDGLYEGLDWLSNQ 324 (329)
T ss_dssp TT----------------------------TTBTHHHHHHHHHHH
T ss_pred CC----------------------------CCcCHHHHHHHHHHH
Confidence 86 567888888877654
No 279
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.47 E-value=5.5e-05 Score=75.85 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=55.0
Q ss_pred hhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccccc
Q psy3589 196 EMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLRNN 275 (604)
Q Consensus 196 E~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~~~ 275 (604)
+.+|+||+|+|+.++. ....+...+. ..+.|+|+|+||+|+............+...+ +++++++||.
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~-~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~SA~-------- 149 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEIL-EMEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFTSSV-------- 149 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHH-TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEECCTT--------
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHH-hcCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEEEee--------
Confidence 6899999999998742 2222333443 45799999999999865432211122233333 4678889886
Q ss_pred cccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 276 IENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+.+|++.+....
T Consensus 150 --------------------~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 150 --------------------TGEGLEELKEKIVEYA 165 (258)
T ss_dssp --------------------TCTTHHHHHHHHHHHH
T ss_pred --------------------CCcCHHHHHHHHHHHh
Confidence 5678888888776643
No 280
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.47 E-value=0.00016 Score=68.64 Aligned_cols=58 Identities=24% Similarity=0.376 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++.... ......+.+.....+.... .+.++|+||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 3479999999999999999999987532 1222233333333333332 46789999963
No 281
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.47 E-value=8e-05 Score=71.07 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||............|...+ ++.++.+||.
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 164 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL-GIPFIESSAK 164 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH-TCCEEECBTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc-CCEEEEEeCC
Confidence 35678999999999987653221 112222221 23689999999999954322122222222222 3568888886
No 282
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.46 E-value=6.2e-05 Score=70.68 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=54.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+... ......+.... ++.++.+||+
T Consensus 91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~- 167 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL--GFEFFEASAK- 167 (189)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTT-
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc--CCeEEEEECC-
Confidence 4678999999999987653221 112222322 14789999999999976422 12222333333 3678888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.+|++.+...
T Consensus 168 ---------------------------~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 168 ---------------------------ENINVKQVFERLVDV 182 (189)
T ss_dssp ---------------------------TTBSHHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHHH
Confidence 556788888777553
No 283
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.46 E-value=0.00013 Score=68.47 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHH-HHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVL-AWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~-~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+..... .-...|...+ +++++.+||.
T Consensus 84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 161 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLETSAK 161 (196)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCCEEEECTT
T ss_pred HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc-CCcEEEEeCC
Confidence 35678999999999988653221 112222221 2368999999999998653211 1122233333 4678888886
No 284
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.46 E-value=0.00012 Score=68.13 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|.+...... ....+.+.....+.... .+.++|+||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 458999999999999999999997653321 11112122222333333 46789999953
No 285
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.46 E-value=9.6e-05 Score=75.60 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
..+|+|+|.+|||||||||.|+|...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 46899999999999999999999764
No 286
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.46 E-value=5.9e-05 Score=70.94 Aligned_cols=54 Identities=30% Similarity=0.381 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc--ccCcCcccceeEEEEecCCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS--VSRTPGHTKHFQTIFLTDNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~--~g~i~g~t~~~q~~~~~~~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++..... .+..+..+..+ ....+.++|+||..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHV 102 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCc
Confidence 45799999999999999999999875321 11122222221 23457788999975
No 287
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.46 E-value=0.00021 Score=67.72 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=45.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhc----cCCCcEEEEEeCCCCCCHHhH--------HHHHHHHHhh---CCC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTG----TLGKDMILVMNKIDLAPAPLV--------LAWKHYFQSK---FPK 258 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~--------~~w~~yf~~~---~p~ 258 (604)
.+..+|++|+|+|+.++.......+..++.+ ..+.|+|||.||+||++.... ......|... ..+
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 4567999999999998732222333344432 347899999999999875321 1112233331 124
Q ss_pred ceEEEEeec
Q psy3589 259 LTILCFTSY 267 (604)
Q Consensus 259 ~~vv~~Sa~ 267 (604)
+.++.+||+
T Consensus 172 ~~~~e~Sa~ 180 (196)
T 3llu_A 172 LSFYLTSIY 180 (196)
T ss_dssp EEEEEECTT
T ss_pred cceEEEEec
Confidence 677888886
No 288
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.46 E-value=0.00013 Score=68.51 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=37.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCcccc-CcCcccceeEEEEec---CCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVS-RTPGHTKHFQTIFLT---DNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g-~i~g~t~~~q~~~~~---~~~~l~D~pGl~ 423 (604)
+..++|+|+|.+|||||||+|.|++....... ...+.+.....+... ..+.++|+||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch
Confidence 34589999999999999999999986533221 122222222222222 235789999974
No 289
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.46 E-value=0.00017 Score=66.43 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccc-ee-EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK-HF-QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~-~~-q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++.... .....++. .+ ..+.... .+.++|+||..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 68 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCch
Confidence 4589999999999999999999986422 11111211 11 1222232 35779999964
No 290
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.45 E-value=7.8e-05 Score=67.93 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=54.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHh---hc--cCCCcEEEEEeCCCCCCH----HhHHHHHHHHHhhCCCceEEE
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYV---TG--TLGKDMILVMNKIDLAPA----PLVLAWKHYFQSKFPKLTILC 263 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv---~~--~~~K~~ILVlNK~DLv~~----~~~~~w~~yf~~~~p~~~vv~ 263 (604)
..+..+|++++|+|+.++..+ ..+..++ .. ..+.|+++|+||+||.+. .........+...+ ++.++.
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~ 147 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK-GLLFFE 147 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-TCEEEE
T ss_pred hhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-CCEEEE
Confidence 356789999999999887432 2222222 21 246889999999999754 11122222232222 367888
Q ss_pred EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 264 FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 264 ~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
+||. .+.|+.++++.+.+
T Consensus 148 ~Sa~----------------------------~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 148 TSAK----------------------------TGENVNDVFLGIGE 165 (170)
T ss_dssp CCTT----------------------------TCTTHHHHHHHHHT
T ss_pred EeCC----------------------------CCCCHHHHHHHHHH
Confidence 8886 55678888877655
No 291
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.44 E-value=0.00013 Score=69.22 Aligned_cols=57 Identities=25% Similarity=0.434 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++..... ...+..+..+ ..+.... .+.++|+||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 45899999999999999999999865321 1122222222 2233332 36789999964
No 292
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.44 E-value=0.00016 Score=67.77 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
+..++|+|+|.+|||||||+|.|++.... ......+.+.....+.... .+.++|+||..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 34589999999999999999999976532 1122233333333333322 46789999964
No 293
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.44 E-value=8.6e-05 Score=67.62 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHhh---c--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYVT---G--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~---~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~S 265 (604)
..+..+|++|+|+|+.++..+ ..+..++. . ..+.|+|||+||+||.+... ......+.... ++.++.+|
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 149 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN--SLLFMETS 149 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECC
T ss_pred HhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc--CCeEEEEe
Confidence 356789999999999877432 12222222 1 24678999999999965422 12223333332 46788888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|. ++.|+.+|++.+.+.
T Consensus 150 a~----------------------------~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 150 AK----------------------------TSMNVNEIFMAIAKK 166 (170)
T ss_dssp TT----------------------------TCTTHHHHHHHHHHT
T ss_pred CC----------------------------CCCCHHHHHHHHHHH
Confidence 86 567888888877654
No 294
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.44 E-value=0.00014 Score=68.27 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccc--eeEEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTK--HFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~--~~q~~~~~~---~~~l~D~pGl~ 423 (604)
+..++|+|+|++|||||||+|.|++..... ...+..+. ....+.... .+.++|+||..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 345899999999999999999999765331 12223332 223333333 36788999953
No 295
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.44 E-value=0.00012 Score=68.36 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=39.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||+|.|.+........+.+.+. ..+.. ...+.++|+||..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINNTRFLMWDIGGQE 76 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETTEEEEEEEESSSG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECCEEEEEEECCCCH
Confidence 345899999999999999999999876544444444332 22222 2346789999974
No 296
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.44 E-value=0.00014 Score=66.04 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=44.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++++|+|+.++..+.. ..+...+.. ..++|+|+|+||+||.+... ......+.... +++++.+||.
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 149 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW--NVNYVETSAK 149 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEECCTT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc--CCeEEEeCCC
Confidence 3567999999999987653211 111112221 23789999999999975421 23333444443 3578888886
No 297
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.44 E-value=0.00014 Score=67.04 Aligned_cols=74 Identities=9% Similarity=0.016 Sum_probs=44.8
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc------cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEE
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG------TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCF 264 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~------~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~ 264 (604)
..+..+|++++|+|+.++..+... .+...+.. ..+.|+|+|+||+||..... ......+... ..+..++.+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~ 153 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-NGDYPYFET 153 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-TTCCCEEEC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-cCCceEEEE
Confidence 346789999999999887532221 11121211 15689999999999974322 2222333332 235678888
Q ss_pred eec
Q psy3589 265 TSY 267 (604)
Q Consensus 265 Sa~ 267 (604)
||.
T Consensus 154 Sa~ 156 (177)
T 1wms_A 154 SAK 156 (177)
T ss_dssp CTT
T ss_pred eCC
Confidence 886
No 298
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.44 E-value=3.3e-05 Score=74.54 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
....+||+|+||||||||+++|+|++.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34689999999999999999999998753
No 299
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.44 E-value=9e-05 Score=66.99 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=43.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|.+++|+|+.++..+.. ..+...+.. ..+.|+++|+||+|+.+..........|...+ +++++.+||.
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 147 (166)
T 2ce2_X 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSY-GIPYIETSAK 147 (166)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-TCCEEEECTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHc-CCeEEEecCC
Confidence 4567999999999987642211 111122221 23689999999999986432222222232222 3578888886
No 300
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.43 E-value=0.00019 Score=66.59 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccce-eEEEEecCC---eEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH-FQTIFLTDN---IRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~-~q~~~~~~~---~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||+|.|++....... .+..+.. ......... +.++|+||..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY-DPTIEDSYLKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceeEEEEEeCCcEEEEEEEECCCch
Confidence 34589999999999999999999976432111 1111111 222223322 4568999954
No 301
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.43 E-value=0.00012 Score=66.51 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
++|+++|.+|||||||+|.|.+.......++.+ .....+.. ...+.+.|+||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS--CCEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCc--eeEEEEEECCEEEEEEEcCCCh
Confidence 479999999999999999998654332222222 11222222 2346789999973
No 302
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.43 E-value=0.00017 Score=68.58 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccc--ceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT--KHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t--~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|.+..... ...+..+ .....+.... .+.++|+||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 35799999999999999999999865331 1122222 2222333333 46789999964
No 303
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.43 E-value=0.00018 Score=67.37 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccce-e-EEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH-F-QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~-~-q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+++|.+|||||||+|.|++..... ....++.. . ..+.... .+.++|+||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999999764321 11111111 1 1222222 26789999964
No 304
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.43 E-value=0.00013 Score=67.74 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=44.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++++|+|+.++..+.. ..+...+.. ..+.|+|+|+||+||.+... ......+.... ++.++.+||+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 163 (187)
T 2a9k_A 86 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW--NVNYVETSAK 163 (187)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc--CCeEEEeCCC
Confidence 4567999999999987643211 111111211 23789999999999976422 23344444443 4678888886
No 305
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=0.00013 Score=68.59 Aligned_cols=69 Identities=7% Similarity=0.027 Sum_probs=43.6
Q ss_pred hhhcCEEEEEEecCCCCCCCC-hhHHHHhhcc---CCCcEEEEEeCCCCC-------CHHhHHHHHHHHHhhCCCceEEE
Q psy3589 195 LEMSDIILIIIDIRYPCLMFP-PTLYDYVTGT---LGKDMILVMNKIDLA-------PAPLVLAWKHYFQSKFPKLTILC 263 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~~---~~K~~ILVlNK~DLv-------~~~~~~~w~~yf~~~~p~~~vv~ 263 (604)
+..+|++|+|+|+.++..+.. ..+...+... .+.|+|||.||+||. +......|. ..+..+.++.
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~~~~~~~~e 158 (184)
T 3ihw_A 83 AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS----TDLKRCTYYE 158 (184)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----HHTTTCEEEE
T ss_pred ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH----HHcCCCeEEE
Confidence 456899999999988754322 2233333322 467999999999994 233333332 3333467888
Q ss_pred Eeec
Q psy3589 264 FTSY 267 (604)
Q Consensus 264 ~Sa~ 267 (604)
+||+
T Consensus 159 ~Sa~ 162 (184)
T 3ihw_A 159 TCAT 162 (184)
T ss_dssp EBTT
T ss_pred ecCC
Confidence 8886
No 306
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.43 E-value=0.00017 Score=67.28 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..++|+|+|++|||||||+|.|++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999999999999999754
No 307
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=68.66 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGL 422 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl 422 (604)
+..++|+|+|.+|||||||+|.|++...... ....+.+.....+.... .+.++|+||.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc
Confidence 4568999999999999999999998653211 12222222233333333 4678899995
No 308
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.42 E-value=9.4e-05 Score=70.48 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=34.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec-CCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT-DNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~-~~~~l~D~pGl~ 423 (604)
...+|+|+|++|||||||++.|.+........+.+.+. ..+... ..+.+.|+||..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETTEEEEEEEECC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECCEEEEEEECCCcH
Confidence 44789999999999999999999865332222333322 223333 246788999964
No 309
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.42 E-value=0.00023 Score=72.80 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEec-CCCCCCCCh-hHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCC--ce
Q psy3589 185 LETWRQLWRVLEMSDIILIIIDI-RYPCLMFPP-TLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPK--LT 260 (604)
Q Consensus 185 le~wRQlwrviE~sDiVl~VvDa-R~Pl~~~~~-~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~--~~ 260 (604)
..+....++.+..+|++|+|+|+ ..++..... .+..++. ..++|+|+|+||+|+++... .+.+++...... ..
T Consensus 155 ~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~-~~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 155 QQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-PEGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLG 231 (315)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-SSCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTC
T ss_pred HHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC-CCCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCC
Confidence 34556778889999999999997 555544443 5666665 45789999999999987653 123344332111 34
Q ss_pred EEEEeec
Q psy3589 261 ILCFTSY 267 (604)
Q Consensus 261 vv~~Sa~ 267 (604)
++.+++.
T Consensus 232 ~~~v~~~ 238 (315)
T 1jwy_B 232 FIGVINR 238 (315)
T ss_dssp EEECCCC
T ss_pred eEEEecC
Confidence 5555554
No 310
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.42 E-value=0.00016 Score=72.19 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=44.2
Q ss_pred hcCEEEEEEecCCC--CCCCChhHHHHhh---c---cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 197 MSDIILIIIDIRYP--CLMFPPTLYDYVT---G---TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 197 ~sDiVl~VvDaR~P--l~~~~~~L~~yv~---~---~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+|++|+|+|+.++ ..+ ..+..++. . ..+.|+|||+||+||.....+.....+.... .++.++.+||+
T Consensus 162 ~ad~vilV~D~t~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~e~SAk 237 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF--DDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSAR 237 (255)
T ss_dssp ECCEEEEEEECBC----CH--HHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS-SSCCEEECBTT
T ss_pred cCCEEEEEEECCCCchhhH--HHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc-CCCeEEEEECC
Confidence 69999999999987 332 12222221 1 2468999999999998766555444444432 24678888886
No 311
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.42 E-value=0.00013 Score=68.88 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec-CCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT-DNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~-~~~~l~D~pGl~ 423 (604)
...+|+++|++|||||||++.|.+........+.+.+ ...+... ..+.+.|+||..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETTEEEEEEECCCSG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECCEEEEEEECCCCH
Confidence 3468999999999999999999976543333333332 2223333 246788999975
No 312
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.42 E-value=5.2e-05 Score=72.28 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
..+||+||||||||||+++|+|+.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999863
No 313
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.0004 Score=72.85 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=58.9
Q ss_pred hhcCEEEEEEecCCCCCCCChh---HHHHhhcc-CCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcc
Q psy3589 196 EMSDIILIIIDIRYPCLMFPPT---LYDYVTGT-LGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYN 271 (604)
Q Consensus 196 E~sDiVl~VvDaR~Pl~~~~~~---L~~yv~~~-~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~ 271 (604)
..+|.+|+|+|+..+....... +...+... .++|+|+|+||+|+...........++... +++++++||.
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~iSA~---- 318 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEK--GLNPIKISAL---- 318 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHT--TCCCEECBTT----
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhc--CCCeEEEeCC----
Confidence 3699999999987764221122 22233322 279999999999999877665555655543 4567888886
Q ss_pred cccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 272 LRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+++|++.+.+.+
T Consensus 319 ------------------------~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 319 ------------------------KGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ------------------------TTBTHHHHHHHHHHHH
T ss_pred ------------------------CCcCHHHHHHHHHHHH
Confidence 5678888888776643
No 314
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.41 E-value=0.00014 Score=68.16 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=44.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+... .......|...+ ++.++.+||+
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~ 167 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH-SMPLFETSAK 167 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCCEEECCSS
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHc-CCEEEEEeCC
Confidence 4568999999999987654322 111122221 34689999999999965422 122233343333 4678888886
No 315
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.40 E-value=0.00017 Score=65.36 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=53.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|.+++|+|+.++..+.. ..+...+.. ..+.|+|+|+||+||.+... ......+.... +++++.+||.
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 148 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW--GCPFMETSAK 148 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSCEEEECTT
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh--CCCEEEecCC
Confidence 4678999999999987643211 111111211 24789999999999975432 11222233333 3578888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|+.++++.+..
T Consensus 149 ----------------------------~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 149 ----------------------------SKTMVDELFAEIVR 162 (167)
T ss_dssp ----------------------------CHHHHHHHHHHHHH
T ss_pred ----------------------------CCcCHHHHHHHHHH
Confidence 56788888877755
No 316
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.40 E-value=0.00033 Score=79.65 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCc--cccCc------------------CcccceeEEEEecCCeEEecCCCccC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVV--SVSRT------------------PGHTKHFQTIFLTDNIRLCDCPGLVF 424 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~--~~g~i------------------~g~t~~~q~~~~~~~~~l~D~pGl~~ 424 (604)
....+++|+|++|+|||||++.|++...+ ..|.+ .................++||||.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~-- 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY-- 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS--
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc--
Q ss_pred CCCCChhhhHhhcccccccccCchHHHHHHHHhcCHHHHhhcCCCCCcccccHHHHHHHHHHhcchhhhccCcccHHHHH
Q psy3589 425 PSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAA 504 (604)
Q Consensus 425 p~~~~~~~~~l~g~~~i~~l~~~~~~i~~l~~~~~l~~ll~~~~p~~~~~~~~~ell~~~a~~rg~ls~sGG~~d~~~~A 504 (604)
.+.....
T Consensus 85 -------------------------------------------------------------------------~~f~~~~ 91 (665)
T 2dy1_A 85 -------------------------------------------------------------------------GDFVGEI 91 (665)
T ss_dssp -------------------------------------------------------------------------GGGHHHH
T ss_pred -------------------------------------------------------------------------cchHHHH
Q ss_pred HHHHHhhccceeeeecCCCCcccccCCCcCCCCHHHHHHHHHhhhhcCCCCeEEEEecChhhh
Q psy3589 505 NELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEG 567 (604)
Q Consensus 505 r~ll~dlSgG~l~al~~pP~lLLLDEP~T~~LD~~~~~~L~~~~~l~~~g~tVIiVTHD~~e~ 567 (604)
...++. .+.-++++| | +.+++......+..+ ...+.++|++.|.++..
T Consensus 92 ~~~l~~----------ad~~ilVvD-~-~~g~~~qt~~~~~~~---~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 92 RGALEA----------ADAALVAVS-A-EAGVQVGTERAWTVA---ERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHH----------CSEEEEEEE-T-TTCSCHHHHHHHHHH---HHTTCCEEEEEECGGGC
T ss_pred HHHHhh----------cCcEEEEEc-C-CcccchhHHHHHHHH---HHccCCEEEEecCCchh
No 317
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.40 E-value=0.00024 Score=66.79 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=44.0
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+... ......+.... ++.++.+||+
T Consensus 90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~ 166 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH--GLIFMETSAK 166 (191)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEEECTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc--CCEEEEEeCC
Confidence 4567999999999987653322 112222221 24789999999999965321 12222333333 4678888886
No 318
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00022 Score=67.14 Aligned_cols=57 Identities=23% Similarity=0.205 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++..... .....+.+.. ..+.... .+.++|+||..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChH
Confidence 45899999999999999999999754321 1111111111 1122222 35789999954
No 319
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.40 E-value=4.2e-05 Score=82.30 Aligned_cols=89 Identities=16% Similarity=0.282 Sum_probs=60.4
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccC
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPT 269 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~ 269 (604)
+.+.++..+|++|+|+|+ ........+...+. ..++|+|+|+||+|+.+.... ...+.+...+ ++.++.+||+
T Consensus 106 ~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~-~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~-g~~v~~vSAk-- 178 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS--APTPYEDDVVNLFK-EMEIPFVVVVNKIDVLGEKAE-ELKGLYESRY-EAKVLLVSAL-- 178 (423)
T ss_dssp HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHH-HTTCCEEEECCCCTTTTCCCT-HHHHHSSCCT-TCCCCCCSSC--
T ss_pred HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHH-hcCCCEEEEEeCcCCCCccHH-HHHHHHHHHc-CCCEEEEECC--
Confidence 455677899999999999 22223333444444 457999999999999876543 3334444444 4677788886
Q ss_pred cccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 270 YNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+++|++.+...+
T Consensus 179 --------------------------tg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 179 --------------------------QKKGFDDIGKTISEIL 194 (423)
T ss_dssp --------------------------CTTSTTTHHHHHHHHS
T ss_pred --------------------------CCCCHHHHHHHHHHhh
Confidence 4567777888777665
No 320
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00018 Score=67.40 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|++|||||||+|.|++.... ....+.+.+.....+.+.. .+.++|+||..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCch
Confidence 479999999999999999999976532 2222233333333333332 36778999964
No 321
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.40 E-value=0.00012 Score=70.25 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=35.7
Q ss_pred hhhcCEEEEEEecCCCCCCCC---hhHHHHhhc----cCCCcEEEEEeCCCCCCHHhHHHHHHHH
Q psy3589 195 LEMSDIILIIIDIRYPCLMFP---PTLYDYVTG----TLGKDMILVMNKIDLAPAPLVLAWKHYF 252 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~---~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~~~w~~yf 252 (604)
+..+|++|+|+|+.++..... ..+...+.. ..+.|+|||+||+||.+........+.+
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l 140 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 140 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence 678999999999976221111 112222221 2468999999999998664444333333
No 322
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.39 E-value=0.00019 Score=67.55 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=37.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||+|.|++...... ....+.+.....+.... .+.++|+||..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCch
Confidence 3458999999999999999999997653221 11222222233333333 46789999964
No 323
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.39 E-value=0.00018 Score=68.49 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccc--ceeEEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT--KHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t--~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
+..++|+|+|.+|||||||+|.|++..... ...+..+ .....+.... .+.++|+||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 345899999999999999999999765321 1112222 2222333333 46789999963
No 324
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.00017 Score=69.14 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGL 422 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl 422 (604)
..++|+|+|.+|||||||+|.|++.... ..+.+.+.......+.... .+.++|+||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 4589999999999999999999875432 2222222222222333333 3678899995
No 325
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.38 E-value=5.4e-05 Score=76.74 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
...+|+|||.+|||||||+|.|+|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 346899999999999999999999764
No 326
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.38 E-value=0.00014 Score=67.71 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=54.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhh---ccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVT---GTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPT 269 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~---~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~ 269 (604)
.+..+|++++|+|+.++..+.. ..+...+. ...+.|+|+|+||+||.+..........|...+ ++.++.+||.
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~-- 148 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY-GIPFIETSAK-- 148 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH-TCCEEECCTT--
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc-CCeEEEEeCC--
Confidence 3556999999999987643211 11111121 134789999999999975433233333333333 3578888886
Q ss_pred cccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 270 YNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.++++.+...
T Consensus 149 --------------------------~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 149 --------------------------TRQGVDDAFYTLVRE 163 (189)
T ss_dssp --------------------------TCTTHHHHHHHHHHH
T ss_pred --------------------------CCCCHHHHHHHHHHH
Confidence 556788888777553
No 327
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.38 E-value=0.0002 Score=81.93 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGH 401 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~ 401 (604)
..++|+|+|.+|||||||||+|+|.....++..|++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 458999999999999999999999875555555554
No 328
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.38 E-value=0.00054 Score=74.02 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=48.2
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCC-------CChhHHHHhhccCCCc-EEEEEeCCCCCCH----Hh----HHHHHHHH
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLM-------FPPTLYDYVTGTLGKD-MILVMNKIDLAPA----PL----VLAWKHYF 252 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~-------~~~~L~~yv~~~~~K~-~ILVlNK~DLv~~----~~----~~~w~~yf 252 (604)
+.....+..+|++|+|+||+.+... ........+. ..+.| +|+|+||+||.+. .. ......++
T Consensus 110 ~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l 188 (439)
T 3j2k_7 110 PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFL 188 (439)
T ss_pred HHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-HcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 3445567889999999999987641 1111112222 34566 8999999999742 11 22333444
Q ss_pred HhhC----CCceEEEEeecc
Q psy3589 253 QSKF----PKLTILCFTSYP 268 (604)
Q Consensus 253 ~~~~----p~~~vv~~Sa~~ 268 (604)
.... .+++++++||+.
T Consensus 189 ~~~g~~~~~~~~~i~iSA~~ 208 (439)
T 3j2k_7 189 KKVGFNPKKDIHFMPCSGLT 208 (439)
T ss_pred HHhcccccCCeeEEEeeccC
Confidence 3322 146789999973
No 329
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.38 E-value=0.00024 Score=65.53 Aligned_cols=73 Identities=10% Similarity=0.075 Sum_probs=43.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc------cCCCcEEEEEeCCCCCCHHh---HHHHHHHHHhhCCCceEEE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG------TLGKDMILVMNKIDLAPAPL---VLAWKHYFQSKFPKLTILC 263 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~------~~~K~~ILVlNK~DLv~~~~---~~~w~~yf~~~~p~~~vv~ 263 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|+|+||+||..... ...... |.....+..++.
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~-~~~~~~~~~~~~ 156 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE-LAKSLGDIPLFL 156 (182)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH-HHHHTTSCCEEE
T ss_pred HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH-HHHhcCCCeEEE
Confidence 34679999999999887532221 11111111 15689999999999964321 122222 222233567888
Q ss_pred Eeec
Q psy3589 264 FTSY 267 (604)
Q Consensus 264 ~Sa~ 267 (604)
+||+
T Consensus 157 ~Sa~ 160 (182)
T 1ky3_A 157 TSAK 160 (182)
T ss_dssp EBTT
T ss_pred EecC
Confidence 8886
No 330
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.38 E-value=7.1e-05 Score=73.26 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=16.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-CCCCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIM-GRKVV 393 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~-G~~~~ 393 (604)
..+||+||||||||||+++|+ |+.++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 468999999999999999999 98754
No 331
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.37 E-value=0.00016 Score=80.37 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCc--cccCcCccc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVV--SVSRTPGHT 402 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~--~~g~i~g~t 402 (604)
....+|+|+|.+|||||||||.|+|.... .++..+.++
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~ 102 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD 102 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc
Confidence 35578999999999999999999998653 345555443
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.37 E-value=0.00024 Score=74.57 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHh----hCC-----CceEEE
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQS----KFP-----KLTILC 263 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~----~~p-----~~~vv~ 263 (604)
.+++.+|+||+|+|+...... ..+... ...+|.|+|+||+|+.+..........+.. ..+ +.++++
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~---~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 262 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKG---VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLT 262 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTT---SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEE
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHh---HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 456999999999997643211 111111 124689999999999876544333333332 211 357889
Q ss_pred EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 264 FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 264 ~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
+||+ ++.|+++|++.+.+.+
T Consensus 263 iSA~----------------------------~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 263 MSAV----------------------------EGRGLAELWDTVERHR 282 (355)
T ss_dssp EBGG----------------------------GTBSHHHHHHHHHHHH
T ss_pred EEcC----------------------------CCCCHHHHHHHHHHHH
Confidence 9987 5567777777776643
No 333
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.0001 Score=67.28 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=54.9
Q ss_pred HhhhcCEEEEEEecCCCCCCC-ChhHHHHhhc----cCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMF-PPTLYDYVTG----TLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~-~~~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++++|+|+.++..+. ...+...+.+ ..+.|+|+|+||+||.+...+ ......+...+ ++.++.+||.
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~ 149 (172)
T 2erx_A 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW-KCAFMETSAK 149 (172)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEECBTT
T ss_pred hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-CCeEEEecCC
Confidence 456799999999998765322 1222222322 146899999999999754321 11122222222 3577888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+.++++.+.+.+
T Consensus 150 ----------------------------~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 150 ----------------------------LNHNVKELFQELLNLE 165 (172)
T ss_dssp ----------------------------TTBSHHHHHHHHHHTC
T ss_pred ----------------------------CCcCHHHHHHHHHHHH
Confidence 5678888888876643
No 334
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.37 E-value=0.00052 Score=75.89 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=40.0
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCH
Q psy3589 191 LWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPA 242 (604)
Q Consensus 191 lwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~ 242 (604)
..+.+..+|.+|+|+|+..+.......+...+. ..++|+|+|+||+|+...
T Consensus 99 ~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~-~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 99 TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCR-LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHH-TTTCCEEEEEECTTSCCS
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCCEEEEEeCCCCccc
Confidence 456788999999999999987655555555554 457899999999999754
No 335
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.36 E-value=0.00012 Score=68.53 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec-CCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT-DNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~-~~~~l~D~pGl~ 423 (604)
...++|+++|.+|||||||+|.|.+.......++.+. ....+... ..+.++|+||..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGV--NLETLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTC--CEEEEEETTEEEEEEEECCSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCce--EEEEEEECCEEEEEEECCCCH
Confidence 3568999999999999999999986554333222222 12222222 346789999974
No 336
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.36 E-value=6.5e-05 Score=71.88 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCHHhHH--------------HHHHHHHhhC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPAPLVL--------------AWKHYFQSKF 256 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~~~~~--------------~w~~yf~~~~ 256 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..++|+|||+||+||.+..... .... |...+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 176 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-MAKEI 176 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH-HHHHT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH-HHHhc
Confidence 46789999999999887543221 22333332 2478999999999997654311 1222 22333
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
...+++.+||+ ++.|+.++++.+.+
T Consensus 177 ~~~~~~~~SA~----------------------------~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 177 GAVKYLECSAL----------------------------TQRGLKTVFDEAIR 201 (204)
T ss_dssp TCSEEEECCTT----------------------------TCTTHHHHHHHHHH
T ss_pred CCcEEEEeeCC----------------------------CCCCHHHHHHHHHH
Confidence 34568888886 56788888877654
No 337
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.36 E-value=0.0001 Score=68.26 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=34.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCHH
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~~ 243 (604)
.+..+|++++|+|+.++..+... .+...+.. ..+.|+|||+||+||.+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCc
Confidence 46789999999999876532211 12333332 2378999999999997643
No 338
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.35 E-value=0.00023 Score=68.14 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC----CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD----NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~----~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||++.|++...+.. .+..+.....+.+.. .+.++|+||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT--QTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCB--CCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 347899999999999999999997653322 222233333344332 36889999964
No 339
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.35 E-value=0.00011 Score=69.11 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC--CccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK--VVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~--~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||+|.|++.. ......+.+ .....+.. ...+.++|+||..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSSCEEEEEEECCST
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECCEEEEEEECCCCH
Confidence 355899999999999999999999876 222222222 12222222 2357889999954
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.35 E-value=0.00015 Score=66.02 Aligned_cols=73 Identities=14% Similarity=-0.006 Sum_probs=44.8
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc-cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG-TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~-~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++++|+|+.++..+... .+...+.. ..+.|+|+|+||+||.+... ......+.... ++.++.+||.
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 149 (168)
T 1z2a_A 73 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL--KLRFYRTSVK 149 (168)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECBTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc--CCeEEEEecC
Confidence 345689999999999886532211 11122211 24789999999999976321 22233333333 3678888886
No 341
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.35 E-value=0.00025 Score=65.27 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=53.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc----cCCCc-EEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEe
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG----TLGKD-MILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~----~~~K~-~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~S 265 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..++| +|||+||+||.+... ......+.... ++.++.+|
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 153 (178)
T 2hxs_A 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN--GFSSHFVS 153 (178)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEEEC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc--CCcEEEEe
Confidence 36789999999999887543221 12222221 12456 789999999965321 12222333333 36788888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|. ++.|+.++++.+...
T Consensus 154 a~----------------------------~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 154 AK----------------------------TGDSVFLCFQKVAAE 170 (178)
T ss_dssp TT----------------------------TCTTHHHHHHHHHHH
T ss_pred CC----------------------------CCCCHHHHHHHHHHH
Confidence 86 556788888777654
No 342
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.35 E-value=0.00026 Score=65.67 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=50.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhh---c--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVT---G--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~---~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.+|..+ ..+..++. . ..+.|+|||+||+||.+... ......+.... ++.++.+||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa 152 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY--GIKFMETSA 152 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH--TCEEEECCC
T ss_pred HHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc--CCeEEEEeC
Confidence 35679999999999886532 22223332 1 24689999999999975321 12222333333 367888888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
. ++.|+.++++.+...
T Consensus 153 ~----------------------------~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 153 K----------------------------ANINVENAFFTLARD 168 (183)
T ss_dssp -------------------------------CCHHHHHHHHHHH
T ss_pred C----------------------------CCCCHHHHHHHHHHH
Confidence 6 556788887776553
No 343
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.35 E-value=0.00012 Score=69.42 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=40.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhh---c--c---CCCcEEEEEeCCCCCC-HHh--HHHHHHHHHhhCCCceEE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVT---G--T---LGKDMILVMNKIDLAP-APL--VLAWKHYFQSKFPKLTIL 262 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~---~--~---~~K~~ILVlNK~DLv~-~~~--~~~w~~yf~~~~p~~~vv 262 (604)
.+..+|++|+|+|+.++..+ ..+..++. . . .+.|+|||+||+||.+ ... ......+.... ++.++
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~--~~~~~ 168 (208)
T 2yc2_C 93 YWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN--TLDFF 168 (208)
T ss_dssp TCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT--TCEEE
T ss_pred HHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc--CCEEE
Confidence 46789999999999887532 12222222 1 1 4789999999999987 322 12333444443 36788
Q ss_pred EEeec
Q psy3589 263 CFTSY 267 (604)
Q Consensus 263 ~~Sa~ 267 (604)
.+||.
T Consensus 169 ~~Sa~ 173 (208)
T 2yc2_C 169 DVSAN 173 (208)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 88886
No 344
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.35 E-value=0.00013 Score=67.80 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=56.2
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCHHhH--------------HHHHHHHHhhC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPAPLV--------------LAWKHYFQSKF 256 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~~~~--------------~~w~~yf~~~~ 256 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|+|+||+||.+.... .....+. ..+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~ 151 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-KEI 151 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-HHT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH-Hhc
Confidence 46789999999999876533221 23333332 237899999999999764321 1122222 233
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
....++.+||. ++.|+.+|++.+...+
T Consensus 152 ~~~~~~~~Sa~----------------------------~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 152 GAVKYLECSAL----------------------------TQRGLKTVFDEAIRAV 178 (186)
T ss_dssp TCSEEEECCTT----------------------------TCTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCC----------------------------CccCHHHHHHHHHHHH
Confidence 22378888886 5678888888776644
No 345
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.34 E-value=0.00016 Score=66.70 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=53.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhh--ccCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeecc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVT--GTLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~--~~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
.+..+|++++|+|+.++..+.. ..+...+. ...+.|+|+|+||+||.+...+ ......|.... ++.++.+||.
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~- 154 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH-HVAYFEASAK- 154 (181)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEECBTT-
T ss_pred HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-CCeEEEecCC-
Confidence 3567999999999987643211 11111111 1347899999999999764221 11222232332 4678888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
.+.|+.++++.+..
T Consensus 155 ---------------------------~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 155 ---------------------------LRLNVDEAFEQLVR 168 (181)
T ss_dssp ---------------------------TTBSHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHH
Confidence 55678888777655
No 346
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.34 E-value=0.0001 Score=71.25 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=41.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHH-HHCCCCccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNA-IMGRKVVSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~-L~G~~~~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||+|. +.|........+.|.+.....+.... .+.++|+||..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence 3458999999999999999999 66654544555666555544444332 36788999964
No 347
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.34 E-value=5.4e-05 Score=76.57 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH----hHHHHHHHHHhhCCCceEE
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP----LVLAWKHYFQSKFPKLTIL 262 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~----~~~~w~~yf~~~~p~~~vv 262 (604)
+++...+. +.+|+||+|+|+.+.. ....+...+. ..++|+|+|+||+|+.... ....|.+.+ +++++
T Consensus 71 v~~~~~~~-~~~d~vi~V~D~t~~e--~~~~~~~~l~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~vi 141 (272)
T 3b1v_A 71 VARDYLLS-QRADSILNVVDATNLE--RNLYLTTQLI-ETGIPVTIALNMIDVLDGQGKKINVDKLSYHL-----GVPVV 141 (272)
T ss_dssp HHHHHHHT-TCCSEEEEEEEGGGHH--HHHHHHHHHH-HTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-----TSCEE
T ss_pred HHHHHHhc-CCCCEEEEEecCCchH--hHHHHHHHHH-hcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-----CCCEE
Confidence 34443332 5799999999998632 1222333333 3589999999999986432 223444332 36788
Q ss_pred EEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 263 CFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 263 ~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+||. .+.|+.+|++.+...
T Consensus 142 ~~SA~----------------------------~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 142 ATSAL----------------------------KQTGVDQVVKKAAHT 161 (272)
T ss_dssp ECBTT----------------------------TTBSHHHHHHHHHHS
T ss_pred EEEcc----------------------------CCCCHHHHHHHHHHH
Confidence 89986 567888888887664
No 348
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.34 E-value=0.00039 Score=76.33 Aligned_cols=45 Identities=13% Similarity=-0.016 Sum_probs=29.8
Q ss_pred cCCCC-cccccCCCcCCCCHHH---HHHHHHh-hhhcCCCCeEEEEecChh
Q psy3589 520 LMPPQ-YLSKQEYWEKHPDIDE---ILWIQAR-TKEEPYKHPLVSVSDDEA 565 (604)
Q Consensus 520 ~~pP~-lLLLDEP~T~~LD~~~---~~~L~~~-~~l~~~g~tVIiVTHD~~ 565 (604)
..-|. ++++||+ +..++... ...|..+ ..-+..|.++|++||...
T Consensus 294 ~~lP~ivlvIDE~-~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 294 KKEPYIVVLVDEF-ADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCCCEEEEEEETH-HHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred ccCCcEEEEEeCH-HHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 34466 7899999 88877322 2223333 223556899999999987
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.34 E-value=0.00018 Score=66.26 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC----CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD----NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~----~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++..... ...+.+.......+.... .+.+.|+||..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 45899999999999999999999865321 111111111222333332 46789999964
No 350
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.33 E-value=0.00025 Score=74.70 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChh---HHHHhhc--cCCCcEEEEEeCCCCCCHH--hHHHHHH-HHHhh-C
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPT---LYDYVTG--TLGKDMILVMNKIDLAPAP--LVLAWKH-YFQSK-F 256 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~---L~~yv~~--~~~K~~ILVlNK~DLv~~~--~~~~w~~-yf~~~-~ 256 (604)
+.++.++..+..+|+|++|+|+.+|....... +...+.. ..++|+|+|+||+|+++.. ++..... +.... .
T Consensus 246 e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 246 DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYS 325 (364)
T ss_dssp HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcC
Confidence 55677788899999999999998774101111 1222321 2468999999999998743 2112221 11222 2
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+...++++||. ++.|+++|++.+.+.
T Consensus 326 ~~~~~~~~SA~----------------------------~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 326 PIFDVIPISAL----------------------------KRTNLELLRDKIYQL 351 (364)
T ss_dssp CEEEEEECBTT----------------------------TTBSHHHHHHHHHHH
T ss_pred CCCcEEEEECC----------------------------CCcCHHHHHHHHHHH
Confidence 33467888886 567888888877664
No 351
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.33 E-value=0.00032 Score=66.41 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe----cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL----TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~----~~~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||++.|.+............+.......+ .-.+.+.|+||..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCH
Confidence 4568999999999999999999999755432111112222222211 1356889999964
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.33 E-value=0.00022 Score=66.96 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=44.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||..... ......+.... ++.++.+||.
T Consensus 94 ~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 170 (193)
T 2oil_A 94 YYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN--GLLFLETSAL 170 (193)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEECTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc--CCEEEEEeCC
Confidence 4678999999999988754221 112222322 24689999999999975421 12222333332 4678888886
No 353
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.33 E-value=9.9e-05 Score=69.60 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=53.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc-cCCCcEEEEEeCCCCCCHH----hHHHHHHHHHhhCCCce-EEEEe
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG-TLGKDMILVMNKIDLAPAP----LVLAWKHYFQSKFPKLT-ILCFT 265 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~-~~~K~~ILVlNK~DLv~~~----~~~~w~~yf~~~~p~~~-vv~~S 265 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+.. .......+.... +.. ++.+|
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S 168 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL--GCVAYIEAS 168 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH--TCSCEEECB
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc--CCCEEEEee
Confidence 4567999999999988753322 123333332 2468999999999997531 112222233332 233 78888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|. ++.|+.++++.+.+.
T Consensus 169 a~----------------------------~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 169 SV----------------------------AKIGLNEVFEKSVDC 185 (194)
T ss_dssp TT----------------------------TTBSHHHHHHHHHHH
T ss_pred cC----------------------------CCCCHHHHHHHHHHH
Confidence 86 567788888776553
No 354
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.32 E-value=8.2e-05 Score=68.65 Aligned_cols=85 Identities=8% Similarity=0.060 Sum_probs=54.0
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhh---c-cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVT---G-TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~---~-~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+ ..+..++. . ..+.|+|||+||+||.+... ......+.... ++.++.+||.
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 153 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESF--VNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM--GIQLFETSAK 153 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCCEEECBTT
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc--CCeEEEEECC
Confidence 35789999999999886432 12222222 1 34689999999999875431 12222333333 3578888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.++++.+...
T Consensus 154 ----------------------------~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 154 ----------------------------ENVNVEEMFNCITEL 168 (181)
T ss_dssp ----------------------------TTBSHHHHHHHHHHH
T ss_pred ----------------------------CCCCHHHHHHHHHHH
Confidence 556788888777653
No 355
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.31 E-value=0.0002 Score=68.13 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=45.8
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHHh---hc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDYV---TG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~yv---~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~S 265 (604)
..+..+|++|+|+|+.++..+. .+..++ .. ..+.|+|||+||+||.+... ......+.... ++.++.+|
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~S 168 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETYN--SLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN--ELMFLETS 168 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEEC
T ss_pred HHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc--CCEEEEEe
Confidence 3567899999999998875332 222222 21 24789999999999965322 12333444443 46788888
Q ss_pred ec
Q psy3589 266 SY 267 (604)
Q Consensus 266 a~ 267 (604)
|+
T Consensus 169 A~ 170 (200)
T 2o52_A 169 AL 170 (200)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 356
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.31 E-value=0.00013 Score=70.17 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC----CeEEecCCCccC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD----NIRLCDCPGLVF 424 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~----~~~l~D~pGl~~ 424 (604)
..++|+|+|.+|||||||+|.|++.... ....+.+.+.......... .+.++|+||...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchh
Confidence 4589999999999999999999975432 2223333332222222221 267899999753
No 357
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=0.00032 Score=66.25 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcccc-CcCcccceeEEEEecC---CeEEecCCCccC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVS-RTPGHTKHFQTIFLTD---NIRLCDCPGLVF 424 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g-~i~g~t~~~q~~~~~~---~~~l~D~pGl~~ 424 (604)
..++|+|+|.+|||||||+|.|++....... .+.+. .....+.... .+.++|+||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES-TYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc-eEEEEEEECCEEEEEEEEECCCCCc
Confidence 4589999999999999999999976432111 11111 1111222222 367899999753
No 358
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.30 E-value=0.00032 Score=66.70 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee-EEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF-QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~-q~~~~~~---~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||++.|.+...... ..+..+..+ ..+.... .+.++|+||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 3458999999999999999999997653211 112222222 2233333 45788999964
No 359
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.30 E-value=0.00021 Score=67.23 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccc--cCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSV--SRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~--g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
....+|+|+|.+|||||||+|.|++.....+ ..+.+. ....+.. ...+.++|+||..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEETTEEEEEEEECCSG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeCCEEEEEEECCCCH
Confidence 3557999999999999999999998765432 333332 1222221 2246789999974
No 360
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.29 E-value=0.00055 Score=63.14 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=42.5
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHH---Hhhc-----cCCCcEEEEEeCCCCC-------CHHhHHHHHHHHHhhCCCc
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYD---YVTG-----TLGKDMILVMNKIDLA-------PAPLVLAWKHYFQSKFPKL 259 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~---yv~~-----~~~K~~ILVlNK~DLv-------~~~~~~~w~~yf~~~~p~~ 259 (604)
+..+|++|+|+|+.+|..+. .+.. ++.. ..+.|+|||.||+||. +......| .... .++
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~---~~~~-~~~ 143 (178)
T 2iwr_A 70 SGWADAVIFVFSLEDENSFQ--AVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL---XADM-KRC 143 (178)
T ss_dssp HHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHH---HHHH-SSE
T ss_pred HHhCCEEEEEEECcCHHHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHH---HHhh-cCC
Confidence 45699999999998875332 2222 2321 1468999999999993 23333333 3332 246
Q ss_pred eEEEEeec
Q psy3589 260 TILCFTSY 267 (604)
Q Consensus 260 ~vv~~Sa~ 267 (604)
.++.+||+
T Consensus 144 ~~~~~Sa~ 151 (178)
T 2iwr_A 144 SYYETXAT 151 (178)
T ss_dssp EEEEEBTT
T ss_pred eEEEEecc
Confidence 78888886
No 361
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.29 E-value=0.00068 Score=70.84 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=32.4
Q ss_pred CCCcccccCCCcCCCCHHHHHHHHHh-hhhcC---CCCeEEEEecChhhhh
Q psy3589 522 PPQYLSKQEYWEKHPDIDEILWIQAR-TKEEP---YKHPLVSVSDDEAEGK 568 (604)
Q Consensus 522 pP~lLLLDEP~T~~LD~~~~~~L~~~-~~l~~---~g~tVIiVTHD~~e~~ 568 (604)
.|.++++||+ . .+|......|..+ ..+.. .+.++|++||+.....
T Consensus 125 ~~~vlilDE~-~-~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 125 LYMFLVLDDA-F-NLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp CCEEEEEETG-G-GSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred CeEEEEEECc-c-ccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 3889999999 4 4588887777776 22222 4778999999986443
No 362
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.29 E-value=0.00024 Score=76.62 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=49.5
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCC-CcEEEEEeCCCCCC--HH----hHHHHHHHHHhhC---CCceE
Q psy3589 192 WRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLG-KDMILVMNKIDLAP--AP----LVLAWKHYFQSKF---PKLTI 261 (604)
Q Consensus 192 wrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~-K~~ILVlNK~DLv~--~~----~~~~w~~yf~~~~---p~~~v 261 (604)
.+.+..+|++|+|+|++++..........++. ..+ +++|+|+||+||++ +. ....+..++.... +.+++
T Consensus 122 ~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~-~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~ 200 (434)
T 1zun_B 122 ATGASTCDLAIILVDARYGVQTQTRRHSYIAS-LLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF 200 (434)
T ss_dssp HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHH-HTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceE
Confidence 35678999999999999876432222222222 234 46899999999986 22 2344555555442 23678
Q ss_pred EEEeeccC
Q psy3589 262 LCFTSYPT 269 (604)
Q Consensus 262 v~~Sa~~~ 269 (604)
+++||+..
T Consensus 201 i~vSA~~g 208 (434)
T 1zun_B 201 VPMSALKG 208 (434)
T ss_dssp EECCTTTC
T ss_pred EEEeccCC
Confidence 88998743
No 363
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.29 E-value=0.00035 Score=66.04 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=54.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++++|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+... ......+.... ++.++.+||.
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 159 (206)
T 2bov_A 82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW--NVNYVETSAK 159 (206)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEEECTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh--CCeEEEEeCC
Confidence 3567999999999987643211 111112221 23789999999999976422 23334444443 3578888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.++++.+...
T Consensus 160 ----------------------------~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 160 ----------------------------TRANVDKVFFDLMRE 174 (206)
T ss_dssp ----------------------------TCTTHHHHHHHHHHH
T ss_pred ----------------------------CCCCHHHHHHHHHHH
Confidence 456788887776553
No 364
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.28 E-value=0.00019 Score=67.58 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=56.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHh---hc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYV---TG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv---~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+ ..+..++ .. ..+.|+|+|+||+||.+... .....++.... ++.++.+||
T Consensus 92 ~~~~~d~iilV~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa 167 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQDSF--YTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI--GAIVVETSA 167 (192)
T ss_dssp HHTTCSEEEEEEETTCTHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT--TCEEEECBT
T ss_pred hhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEEeC
Confidence 46789999999999887532 1222222 21 23689999999999975321 23344444443 467888888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
. .+.|+.+|++.+...+
T Consensus 168 ~----------------------------~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 168 K----------------------------NAINIEELFQGISRQI 184 (192)
T ss_dssp T----------------------------TTBSHHHHHHHHHHTC
T ss_pred C----------------------------CCcCHHHHHHHHHHHH
Confidence 6 5678888888876643
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.0002 Score=68.84 Aligned_cols=55 Identities=29% Similarity=0.367 Sum_probs=37.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccc--cCcCcccceeEEEEecCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSV--SRTPGHTKHFQTIFLTDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~--g~i~g~t~~~q~~~~~~~~~l~D~pGl~ 423 (604)
....+|+|+|++|||||||++.|++...... +..+..+... ....+.++|+||..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcH
Confidence 3457899999999999999999998653211 1122222211 23467889999974
No 366
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0003 Score=68.13 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++...... ..+.+.+.....+.... .+.++|+||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 458999999999999999999998653321 11222222222333333 46789999964
No 367
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.27 E-value=0.00017 Score=68.43 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHH-------hHHHHHHHHHhhCCCceEE
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAP-------LVLAWKHYFQSKFPKLTIL 262 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~-------~~~~w~~yf~~~~p~~~vv 262 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+.. ........|...+ ++.++
T Consensus 96 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 174 (199)
T 2p5s_A 96 SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY-GALFC 174 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH-TCEEE
T ss_pred HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc-CCeEE
Confidence 34668999999999987754322 112222222 2368999999999996321 1112222222222 45778
Q ss_pred EEeec
Q psy3589 263 CFTSY 267 (604)
Q Consensus 263 ~~Sa~ 267 (604)
.+||+
T Consensus 175 ~~SA~ 179 (199)
T 2p5s_A 175 ETSAK 179 (199)
T ss_dssp ECCTT
T ss_pred EeeCC
Confidence 88886
No 368
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.27 E-value=0.00028 Score=67.40 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee-EEEEecC---CeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF-QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~-q~~~~~~---~~~l~D~pGl~ 423 (604)
.++|+|+|.+|||||||+|.|++....... .+..+..+ ..+.... .+.++|+||..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC-CCcccceEEEEEEECCEEEEEEEEECCCcH
Confidence 478999999999999999999986533211 11111111 1222332 35788999964
No 369
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.27 E-value=0.00032 Score=67.48 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccce-eEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH-FQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~-~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||++.|++...+... .+-.+.. ...+.... .+.+.|+||..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY-TPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 4589999999999999999999986432111 1111111 11222222 36788999964
No 370
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.27 E-value=0.0003 Score=66.86 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=54.0
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHh---hc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYV---TG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv---~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+ ..+..++ .. ..+.|+|||+||+||.+... ......+... + ++.++.+||
T Consensus 77 ~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa 152 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-N-KMPFLETSA 152 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-T-TCCEEECCT
T ss_pred hccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-c-CCeEEEEeC
Confidence 46789999999999886532 1222222 21 24689999999999976421 1122223333 2 467888888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
. .+.|+.++++.+...
T Consensus 153 ~----------------------------~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 153 L----------------------------DSTNVEDAFLTMARQ 168 (206)
T ss_dssp T----------------------------TCTTHHHHHHHHHHH
T ss_pred C----------------------------CCCCHHHHHHHHHHH
Confidence 6 556788888777654
No 371
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.27 E-value=0.00015 Score=68.35 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGR 390 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~ 390 (604)
..++|+|+||||||||+++|+|.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999997
No 372
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.27 E-value=0.00024 Score=66.80 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=54.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhH-HHHHHHHHhhCCCceEEEEeecc
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPLV-LAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~-~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||...... ......|...+ ++.++.+||+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~- 168 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL-GFDFFEASAK- 168 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEECBTT-
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeEEEEECC-
Confidence 35678999999999987643211 122223322 247899999999999643211 11122222222 4678888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.++++.+.+.
T Consensus 169 ---------------------------~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 169 ---------------------------ENISVRQAFERLVDA 183 (191)
T ss_dssp ---------------------------TTBSHHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHHH
Confidence 556788887776553
No 373
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.26 E-value=0.00034 Score=66.60 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=44.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCc-eEEEEee
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKL-TILCFTS 266 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~-~vv~~Sa 266 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||..... .....++.... ++ .++.+||
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~~SA 174 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY--DILCAIETSA 174 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCSEEEECBT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHc--CCCEEEEEeC
Confidence 35678999999999987653221 112222221 24689999999999975321 12223333333 35 7788888
Q ss_pred c
Q psy3589 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
+
T Consensus 175 ~ 175 (201)
T 2hup_A 175 K 175 (201)
T ss_dssp T
T ss_pred C
Confidence 6
No 374
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.26 E-value=0.00025 Score=67.34 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=35.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee-EEEEec---CCeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF-QTIFLT---DNIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~-q~~~~~---~~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++....... .+..+..+ ..+... ..+.++|+||..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGY-DPTVENTYSKIVTLGKDEFHLHLVDTAGQD 83 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-CCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCC-CCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence 4589999999999999999999986543211 11111111 111111 135789999964
No 375
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.26 E-value=0.00015 Score=76.31 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCcC------cccceeE--EEEec-----CCeEEecCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTP------GHTKHFQ--TIFLT-----DNIRLCDCPGLV 423 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~------g~t~~~q--~~~~~-----~~~~l~D~pGl~ 423 (604)
.++|+|||++|||||||+|.|+|......+.++ ..|..+. ...+. ..+.++|+||+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 378999999999999999999987654433322 1222211 11111 136789999984
No 376
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.25 E-value=0.00013 Score=69.70 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=54.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCHHhH---------HHHHHHHHhhCCCceE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPAPLV---------LAWKHYFQSKFPKLTI 261 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~~~~---------~~w~~yf~~~~p~~~v 261 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||...... ......|...+....+
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 45789999999999876532211 22233322 237899999999999764321 1112222222222477
Q ss_pred EEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 262 LCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 262 v~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
+.+||. ++.|+.++++.+...
T Consensus 157 ~~~Sa~----------------------------~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 157 IECSSK----------------------------TQQNVKAVFDTAIKV 177 (212)
T ss_dssp EECCTT----------------------------TCTTHHHHHHHHHHH
T ss_pred EEccCC----------------------------CCCCHHHHHHHHHHH
Confidence 888886 556888888777654
No 377
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.25 E-value=0.00024 Score=67.18 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
...++|+|+|++|||||||+|.|.+.......++.+ .....+.. ...+.+.|+||..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEETTEEEEEEECC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEECCEEEEEEECCCCH
Confidence 456899999999999999999998755332211111 11112222 2246789999974
No 378
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.25 E-value=0.00028 Score=64.36 Aligned_cols=72 Identities=22% Similarity=0.177 Sum_probs=42.4
Q ss_pred hhhcCEEEEEEecCCCCCCCCh--hHHHHhhc--cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEeec
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPP--TLYDYVTG--TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~--~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
+..+|++++|+|+.++..+... .+...... ..+.|+|||+||+||.+... .......+...+ +..++.+||.
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 149 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL-SCKHIETSAA 149 (169)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECBTT
T ss_pred hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc-CCcEEEecCc
Confidence 4459999999999876432221 12121111 13789999999999974321 111222233333 4678888886
No 379
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.25 E-value=0.00026 Score=66.51 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=36.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
...++|+|+|.+|||||||+|.|++.... ....+.+. ....+.. ...+.++|+||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF--NMRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSE--EEEEEEETTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCce--eEEEEEeCCEEEEEEECCCCH
Confidence 34589999999999999999999975432 11222222 1222222 2246789999963
No 380
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.25 E-value=0.00022 Score=68.73 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=32.2
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCHH
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~~ 243 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||.+..
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCH
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccc
Confidence 35689999999999876532111 12222322 2468999999999998754
No 381
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.25 E-value=0.00026 Score=64.37 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=51.4
Q ss_pred hhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEeeccC
Q psy3589 195 LEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFTSYPT 269 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~Sa~~~ 269 (604)
+..+|++++|+|+.+|..+.. ..+...+.. ..+.|+|+|+||+||.+... .......+.... ++.++.+||+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~-- 146 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF-DCKFIETSAA-- 146 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT-TCEEEECBGG--
T ss_pred hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh-CCcEEEeccC--
Confidence 478899999999987753211 111122221 24689999999999975432 122223333333 4678888886
Q ss_pred cccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 270 YNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|+.++++.+..
T Consensus 147 --------------------------~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 147 --------------------------LHHNVQALFEGVVR 160 (166)
T ss_dssp --------------------------GTBSHHHHHHHHHH
T ss_pred --------------------------CCCCHHHHHHHHHH
Confidence 56778888777655
No 382
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.24 E-value=0.00035 Score=67.34 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=33.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc-cCCCcEEEEEeCCCCCC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG-TLGKDMILVMNKIDLAP 241 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~-~~~K~~ILVlNK~DLv~ 241 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||.||+||..
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 3567999999999998754322 122233332 24789999999999954
No 383
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.24 E-value=0.00041 Score=64.25 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
.++|+|+|.+|||||||++.|++..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999999999998654
No 384
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.24 E-value=0.0001 Score=75.80 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCC--ccccC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKV--VSVSR 397 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~--~~~g~ 397 (604)
....+||+|+||||||||+++|+|+.. +..|.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 346799999999999999999999876 55443
No 385
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.23 E-value=0.00019 Score=67.51 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCH
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPA 242 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~ 242 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||.+.
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 36789999999999887532211 22233332 237899999999999764
No 386
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.22 E-value=0.00032 Score=69.51 Aligned_cols=55 Identities=20% Similarity=0.098 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHH---h---hccCCCcEEEEEeCCCCCCHHh
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDY---V---TGTLGKDMILVMNKIDLAPAPL 244 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~y---v---~~~~~K~~ILVlNK~DLv~~~~ 244 (604)
.++++.+.+.. ++||+|+|+...... .++... . ....++|+++|+||+|+.+...
T Consensus 128 l~~~~~~~~~~-~~iv~vvD~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~ 188 (262)
T 1yrb_A 128 FGVRLMENLPY-PLVVYISDPEILKKP--NDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 188 (262)
T ss_dssp HHHHHHHTSSS-CEEEEEECGGGCCSH--HHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred hHHHHHHHHhh-ceEEeccchhhhcCH--HHHHHHHHHHHHHhcccCCCeEEEEeccccccccc
Confidence 36677778877 999999998754322 222111 0 1123689999999999988654
No 387
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.22 E-value=0.00017 Score=69.58 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVV 393 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~ 393 (604)
..++|+||||||||||++.|++...+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46899999999999999999998764
No 388
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.22 E-value=0.00031 Score=65.05 Aligned_cols=85 Identities=11% Similarity=0.013 Sum_probs=50.6
Q ss_pred hhhcCEEEEEEecCCCCCCCCh-hHHHHhhc---cCCCcEEEEEeCCCCCCHHhH--HHHHHHHHhhCCCceEEEEeecc
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPP-TLYDYVTG---TLGKDMILVMNKIDLAPAPLV--LAWKHYFQSKFPKLTILCFTSYP 268 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~---~~~K~~ILVlNK~DLv~~~~~--~~w~~yf~~~~p~~~vv~~Sa~~ 268 (604)
+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||...... .....+.. .+ +..++.+||+
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~~Sa~- 151 (181)
T 3t5g_A 75 SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-SW-NAAFLESSAK- 151 (181)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-HT-TCEEEECCTT-
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-Hh-CCcEEEEecC-
Confidence 4579999999999876432111 11111111 246899999999999643211 12222222 23 4678888886
Q ss_pred CcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 269 TYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|+.++++.+..
T Consensus 152 ---------------------------~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 152 ---------------------------ENQTAVDVFRRIIL 165 (181)
T ss_dssp ---------------------------SHHHHHHHHHHHHH
T ss_pred ---------------------------CCCCHHHHHHHHHH
Confidence 56788888877655
No 389
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.21 E-value=2e-05 Score=77.58 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCCccccCcCccc
Q psy3589 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT 402 (604)
Q Consensus 370 vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t 402 (604)
++|+|||||||||||++|+|++.++.|.+...+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 679999999999999999999998888765443
No 390
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.21 E-value=0.00042 Score=65.98 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGL 422 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl 422 (604)
+..++|+|+|.+|||||||+|.|.+.... ....+.+.......+.... .+.++|+||.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 34589999999999999999999876432 1112222212222333333 4678999996
No 391
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.21 E-value=0.00017 Score=67.86 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc-cccCcCcccceeEEEEecC---CeEEecCCCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV-SVSRTPGHTKHFQTIFLTD---NIRLCDCPGL 422 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~-~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl 422 (604)
..++|+|+|.+|||||||+|.|++.... ......+.+.....+.... .+.++|+||.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 4589999999999999999999975421 1122223333333333322 3677888884
No 392
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.21 E-value=0.00025 Score=67.46 Aligned_cols=50 Identities=26% Similarity=0.209 Sum_probs=34.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc-cCCCcEEEEEeCCCCCCHH
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG-TLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~-~~~K~~ILVlNK~DLv~~~ 243 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|+|+||+||.+..
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc
Confidence 4678999999999987643221 123333332 2378999999999998753
No 393
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.20 E-value=0.00074 Score=62.78 Aligned_cols=87 Identities=11% Similarity=0.223 Sum_probs=52.5
Q ss_pred hhhcCEEEEEEecCCCC-----------CCCChhHHHHhhccCCCcEEEEEeCCCCCCHH--hHHHHHHHHHhhCC--Cc
Q psy3589 195 LEMSDIILIIIDIRYPC-----------LMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP--LVLAWKHYFQSKFP--KL 259 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl-----------~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~--~~~~w~~yf~~~~p--~~ 259 (604)
...+++++.|+|+.... ......+..++. ..+.|+|+|+||+|+.... ....|...+...+. ..
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCC
Confidence 67889999999975321 000111223333 3578999999999998754 34444444322110 12
Q ss_pred eEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 260 TILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 260 ~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.++.+||+ ++.|+.++++.+...
T Consensus 159 ~~~~~Sa~----------------------------~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 159 VFIPISAK----------------------------FGDNIERLKNRIFEV 181 (190)
T ss_dssp HEEECCTT----------------------------TCTTHHHHHHHHHHH
T ss_pred cEEEEecC----------------------------CCCCHHHHHHHHHHh
Confidence 46778876 557788888776553
No 394
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.20 E-value=0.00047 Score=65.15 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccce-e-EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH-F-QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~-~-q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||++.|++.... .....++.. + ..+.... .+.++|+||..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 4589999999999999999999986522 111112211 1 1222232 35589999975
No 395
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.20 E-value=0.00052 Score=76.87 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=61.5
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCC--CceEEEEeec
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFP--KLTILCFTSY 267 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p--~~~vv~~Sa~ 267 (604)
...+.+..+|.+|+|+|+.++............. ..+.|+|+|+||+|+..... ....+.+...+. ...++++||+
T Consensus 89 ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~~~ipiIvviNKiDl~~a~~-~~v~~el~~~lg~~~~~vi~vSAk 166 (600)
T 2ywe_A 89 EVSRALAACEGALLLIDASQGIEAQTVANFWKAV-EQDLVIIPVINKIDLPSADV-DRVKKQIEEVLGLDPEEAILASAK 166 (600)
T ss_dssp HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-HTTCEEEEEEECTTSTTCCH-HHHHHHHHHTSCCCGGGCEECBTT
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-HCCCCEEEEEeccCccccCH-HHHHHHHHHhhCCCcccEEEEEee
Confidence 3446678999999999999886432222222222 45789999999999976431 222233333331 1247888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhcc
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQG 313 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~ 313 (604)
++.|+.+|++.+...++.
T Consensus 167 ----------------------------tg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 167 ----------------------------EGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ----------------------------TTBSHHHHHHHHHHHSCC
T ss_pred ----------------------------cCCCchHHHHHHHHhccc
Confidence 567899999988776654
No 396
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.19 E-value=0.00011 Score=67.71 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=50.3
Q ss_pred hhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH----hHHHHHHHHHhhCCCceEEEEeeccCcc
Q psy3589 196 EMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP----LVLAWKHYFQSKFPKLTILCFTSYPTYN 271 (604)
Q Consensus 196 E~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~----~~~~w~~yf~~~~p~~~vv~~Sa~~~~~ 271 (604)
..+|++++|+|+.++. ....+...+. ..++|+|+|+||+||.... ....|.+.+ +.+++.+||+
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~SA~---- 147 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLM-EMGANLLLALNKMDLAKSLGIEIDVDKLEKIL-----GVKVVPLSAA---- 147 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHH-HTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-----TSCEEECBGG----
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHH-hcCCCEEEEEEchHhccccChhhHHHHHHHHh-----CCCEEEEEcC----
Confidence 4789999999997631 1111222233 3478999999999986432 123333322 3567888886
Q ss_pred cccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 272 LRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|++++++.+..
T Consensus 148 ------------------------~~~~v~~l~~~l~~ 161 (165)
T 2wji_A 148 ------------------------KKMGIEELKKAISI 161 (165)
T ss_dssp ------------------------GTBSHHHHHHHHHH
T ss_pred ------------------------CCCCHHHHHHHHHH
Confidence 56788888887755
No 397
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.19 E-value=0.00016 Score=68.51 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=33.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAP 241 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~ 241 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||.+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 45779999999999877533221 12222322 24789999999999975
No 398
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.19 E-value=0.00025 Score=77.56 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=58.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc--cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhh---CCCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG--TLGKDMILVMNKIDLAPAPLVLAWKHYFQSK---FPKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~---~p~~~vv~~S 265 (604)
..++.+|+||+|+|+.++..+.. ..+..++.. ..++|+|||+||+||............+... ..+..++.+|
T Consensus 385 ~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 464 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 464 (497)
T ss_dssp GGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEE
Confidence 47889999999999988743211 122233321 2478999999999997653333333333221 1234678888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
|+ ++.|+.+|++.+.+.+
T Consensus 465 A~----------------------------~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 465 AT----------------------------SGDGLYEGLTWLTSNY 482 (497)
T ss_dssp TT----------------------------TTBTHHHHHHHHHHHC
T ss_pred CC----------------------------CCCCHHHHHHHHHHHH
Confidence 86 5678999988887643
No 399
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.19 E-value=0.0008 Score=69.13 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
...++|+|+|||||||++..|++...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 4579999999999999999999987653
No 400
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.19 E-value=0.00013 Score=70.37 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=45.0
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc-cCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG-TLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~-~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||...........+.... ++.++.+||+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 157 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAK 157 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHH--TCEEEECBGG
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHc--CCEEEEEeCC
Confidence 34589999999999886543221 12222221 2378999999999997654322222333333 3678888886
No 401
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.19 E-value=0.00024 Score=66.46 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=42.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHH---hhc---cCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDY---VTG---TLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~y---v~~---~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
.+..+|++++|+|+.++..+ ..+..+ +.. ..+.|+|+|+||+||.+... .....++.... ++.++.+||
T Consensus 89 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~Sa 164 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSKSF--ADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY--GIPFIETSA 164 (190)
T ss_dssp -CTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH--TCCEEECCT
T ss_pred hhCcCCEEEEEEECcCHHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc--CCeEEEEeC
Confidence 46789999999999876532 122222 221 23689999999999976321 12222333333 356888888
Q ss_pred c
Q psy3589 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
.
T Consensus 165 ~ 165 (190)
T 3con_A 165 K 165 (190)
T ss_dssp T
T ss_pred C
Confidence 6
No 402
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.19 E-value=0.00037 Score=64.35 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||++.+++........+.+... ...+.+.. .+.+.|+||..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCc
Confidence 34799999999999999999999764332222222111 12233332 35678999964
No 403
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.19 E-value=0.0004 Score=65.76 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHhhhcCEEEEEEecCCCCCCCChhHHHH---hhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEe
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFPPTLYDY---VTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~~~L~~y---v~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~S 265 (604)
..+..+|++|+|+|+.++..+ ..+..+ +.. ..+.|+|||+||+||..... ......+.... ++.++.+|
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 151 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--GFEFFEAS 151 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--TCEEEECB
T ss_pred HhhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC--CCeEEEEE
Confidence 346789999999999876432 122222 221 14689999999999976421 12222222332 35788888
Q ss_pred ec
Q psy3589 266 SY 267 (604)
Q Consensus 266 a~ 267 (604)
|+
T Consensus 152 a~ 153 (203)
T 1zbd_A 152 AK 153 (203)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 404
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.19 E-value=0.00091 Score=71.16 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=49.4
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCc-EEEEEeCCCCCC-HHhH----HHHHHHHHhhC-C--Cc
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKD-MILVMNKIDLAP-APLV----LAWKHYFQSKF-P--KL 259 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~-~ILVlNK~DLv~-~~~~----~~w~~yf~~~~-p--~~ 259 (604)
+...+.+..+|++|+|+|+.++...........+. ..+.| +|+|+||+|+.+ .... ....+++.... + .+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 159 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR-QIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET 159 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHH-HTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHH-HcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 34456778999999999999876432222222332 35677 689999999985 3221 23344554432 1 36
Q ss_pred eEEEEeec
Q psy3589 260 TILCFTSY 267 (604)
Q Consensus 260 ~vv~~Sa~ 267 (604)
+++++||+
T Consensus 160 ~~i~~SA~ 167 (397)
T 1d2e_A 160 PIIVGSAL 167 (397)
T ss_dssp CEEECCHH
T ss_pred cEEEeehh
Confidence 78899986
No 405
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.19 E-value=0.00015 Score=76.41 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSR 397 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~ 397 (604)
.++|+|+||||||||+++|+|+..+..|.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 69999999999999999999999876553
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.18 E-value=0.00057 Score=63.36 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=43.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhh---ccCCCcEEEEEeCCCCCCHHh-HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVT---GTLGKDMILVMNKIDLAPAPL-VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~---~~~~K~~ILVlNK~DLv~~~~-~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++++|+|+.++..+.. ..+...+. ...+.|+|||+||+||..... .......|...+ ++.++.+||.
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~ 163 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-NIPYIETSAK 163 (183)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-TCCEEEEBCS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-CCeEEEeccC
Confidence 3567999999999988743221 11212221 135789999999999975321 111122222222 3678888886
No 407
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.18 E-value=0.00028 Score=73.90 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
..+|+|||.+|||||||||.|+|...
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 36899999999999999999999763
No 408
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.18 E-value=0.0004 Score=64.81 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|++|||||||+|.|++...... ..+.+.... ..+.... .+.+.|+||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCCh
Confidence 458999999999999999999997643211 111111111 1122222 35788999964
No 409
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.17 E-value=0.00021 Score=68.02 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
..++|+|+||||||||+++|++...+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 469999999999999999999988543
No 410
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.17 E-value=0.00038 Score=76.14 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCC----CChhHHHHhh--ccCC-CcEEEEEeCCCCCC--HHh----HHHHHHHHHh
Q psy3589 188 WRQLWRVLEMSDIILIIIDIRYPCLM----FPPTLYDYVT--GTLG-KDMILVMNKIDLAP--APL----VLAWKHYFQS 254 (604)
Q Consensus 188 wRQlwrviE~sDiVl~VvDaR~Pl~~----~~~~L~~yv~--~~~~-K~~ILVlNK~DLv~--~~~----~~~w~~yf~~ 254 (604)
.+.....+..+|++|+|+|++++.+. ..+....++. ...+ +++|+|+||+||++ ... ......++..
T Consensus 125 ~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~ 204 (483)
T 3p26_A 125 VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVD 204 (483)
T ss_dssp HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999987532 1222222211 1233 57999999999987 222 2223334433
Q ss_pred hCC---CceEEEEeeccC
Q psy3589 255 KFP---KLTILCFTSYPT 269 (604)
Q Consensus 255 ~~p---~~~vv~~Sa~~~ 269 (604)
..- ++.++++||+..
T Consensus 205 ~g~~~~~~~~i~iSA~~g 222 (483)
T 3p26_A 205 IGFFEDNINWVPISGFSG 222 (483)
T ss_dssp HTCCGGGEEEEECCSSSC
T ss_pred cCCCcccceEEEEeeecC
Confidence 221 467899999854
No 411
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.17 E-value=0.00017 Score=69.31 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCC-ccccCcCcccc
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRKV-VSVSRTPGHTK 403 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~~-~~~g~i~g~t~ 403 (604)
..++|+||||||||||++.|++..+ .-...++.+|+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR 56 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTR 56 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECS
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeeccccc
Confidence 4689999999999999999998765 23344444444
No 412
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.16 E-value=0.0003 Score=65.39 Aligned_cols=72 Identities=18% Similarity=0.079 Sum_probs=44.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||.+... ......+.... ++.++.+||.
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 155 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN--ELMFLETSAL 155 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEecCC
Confidence 46789999999999886543221 11112221 35789999999999964322 12233344333 4678888886
No 413
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.15 E-value=0.00019 Score=72.37 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=43.4
Q ss_pred hhcCEEEEEEec-CCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHH----HHHhhCCCceEEEEeec
Q psy3589 196 EMSDIILIIIDI-RYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKH----YFQSKFPKLTILCFTSY 267 (604)
Q Consensus 196 E~sDiVl~VvDa-R~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~----yf~~~~p~~~vv~~Sa~ 267 (604)
.++|++|+++|. +.++...+..+.+.+.. ++|+|+|+||+|+++...+..... .+... +++++.+||.
T Consensus 114 ~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~--~i~v~~~sa~ 186 (274)
T 3t5d_A 114 NRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPET 186 (274)
T ss_dssp CCCCEEEEEECSCCSSCCHHHHHHHHHHTT--TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT--TCCCCCC---
T ss_pred CceeEEEEEecCCCCCCCHHHHHHHHHHhc--cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc--CCeEEcCCCC
Confidence 368888888855 44555444555556553 799999999999998876654433 33332 4566677775
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.15 E-value=0.00012 Score=76.35 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
....++|+|+||+|||||+|.|++..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998653
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.13 E-value=0.00034 Score=67.06 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
..++|+|+|.+|||||||+|.|++...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 458999999999999999999998643
No 416
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.13 E-value=0.00049 Score=65.64 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
...++|+|+|.+|||||||++.+++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 345899999999999999999998643
No 417
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.13 E-value=0.00011 Score=75.40 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
-.++|+||||||||||+++|+|++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 479999999999999999999997
No 418
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.13 E-value=0.0002 Score=67.75 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=17.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCc---CcccceeEEEEecC-----CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRT---PGHTKHFQTIFLTD-----NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i---~g~t~~~q~~~~~~-----~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++......... .+.......+.... .+.++|+||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 347999999999999999999998721111111 11111222333333 36789999973
No 419
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.12 E-value=0.00051 Score=64.63 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
..++|+|+|.+|||||||+|.|++...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 458999999999999999999998653
No 420
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00039 Score=66.40 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=34.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc-cCCCcEEEEEeCCCCCCHH
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG-TLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~-~~~K~~ILVlNK~DLv~~~ 243 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..++|+|+|+||+||.+..
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence 4578999999999987643211 123333332 2378999999999997653
No 421
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.12 E-value=0.00013 Score=73.30 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=54.4
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHhhccCC-CcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEeeccCcccc
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLG-KDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFTSYPTYNLR 273 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~-K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~ 273 (604)
...+|+||+|+|+.++. ....+...+. ..+ +|+|+|+||+|+.+..........+...+ +++++++||.
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~~~~Sa~------ 148 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELF-EMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-GVPVIPTNAK------ 148 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHH-HTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-SSCEEECBGG------
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHH-hcCCCCEEEEEEChhcCcccccHHHHHHHHHHc-CCcEEEEEeC------
Confidence 46899999999998752 2222222233 335 99999999999875432211122233333 4678888886
Q ss_pred cccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 274 NNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+.+|++.+...+
T Consensus 149 ----------------------~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 149 ----------------------KGEGVEELKRMIALMA 164 (271)
T ss_dssp ----------------------GTBTHHHHHHHHHHHH
T ss_pred ----------------------CCCCHHHHHHHHHHHH
Confidence 5568888888776643
No 422
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.12 E-value=0.00039 Score=63.35 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=52.8
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHh---hc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYV---TG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv---~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
+..+|++++|+|+.++..+ ..+..++ .. ..+.|+++|+||+||.+... ......+... . ++.++.+||.
T Consensus 76 ~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa~ 151 (170)
T 1z08_A 76 YRDSNGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-V-GAKHYHTSAK 151 (170)
T ss_dssp STTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-T-TCEEEEEBTT
T ss_pred hccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH-c-CCeEEEecCC
Confidence 4689999999999876432 1222222 21 14689999999999975321 1222233333 2 4678888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|+.++++.+..
T Consensus 152 ----------------------------~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 152 ----------------------------QNKGIEELFLDLCK 165 (170)
T ss_dssp ----------------------------TTBSHHHHHHHHHH
T ss_pred ----------------------------CCCCHHHHHHHHHH
Confidence 55678888877654
No 423
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.12 E-value=0.00047 Score=65.24 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..++|+|||.+|||||||+|.++|..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCc
Confidence 34799999999999999999999743
No 424
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.11 E-value=0.0005 Score=62.95 Aligned_cols=86 Identities=17% Similarity=0.060 Sum_probs=51.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++++|+|+.++..+.. ..+...+.. ..++|+|+|+||+||.+... ......+.... ++.++.+||+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~ 151 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF--DCKFIETSAT 151 (175)
T ss_dssp TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH--TSEEEECBTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc--CCeEEEEecC
Confidence 3457899999999987653211 112222222 23689999999999976422 11112222222 3578888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
++.|+.++++.+..
T Consensus 152 ----------------------------~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 152 ----------------------------LQHNVAELFEGVVR 165 (175)
T ss_dssp ----------------------------TTBSHHHHHHHHHH
T ss_pred ----------------------------CCCCHHHHHHHHHH
Confidence 55678888877655
No 425
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.10 E-value=0.00021 Score=66.73 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=52.0
Q ss_pred hhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH----hHHHHHHHHHhhCCCceEEEEeeccCcc
Q psy3589 196 EMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP----LVLAWKHYFQSKFPKLTILCFTSYPTYN 271 (604)
Q Consensus 196 E~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~----~~~~w~~yf~~~~p~~~vv~~Sa~~~~~ 271 (604)
..+|++++|+|+.... ....+...+. ..+.|+|+|+||+|+.... ....|.+.+ ++.++.+||.
T Consensus 84 ~~~~~~i~v~d~~~~~--~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~---- 151 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE--RNLYLTLQLM-EMGANLLLALNKMDLAKSLGIEIDVDKLEKIL-----GVKVVPLSAA---- 151 (188)
T ss_dssp HCCSEEEEEEEGGGHH--HHHHHHHHHH-TTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-----TSCEEECBGG----
T ss_pred cCCCEEEEEecchhHH--HHHHHHHHHH-hcCCCEEEEEEhhhccccccchHHHHHHHHHh-----CCCeEEEEec----
Confidence 4689999999987521 1112223333 3578999999999986442 223333322 3567888886
Q ss_pred cccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhcc
Q psy3589 272 LRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQG 313 (604)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~~ 313 (604)
.+.|+.+|++.+...+..
T Consensus 152 ------------------------~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 152 ------------------------KKMGIEELKKAISIAVKD 169 (188)
T ss_dssp ------------------------GTBSHHHHHHHHHHHHTT
T ss_pred ------------------------CCCCHHHHHHHHHHHHHh
Confidence 456788888877665443
No 426
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00039 Score=65.65 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=43.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.+|..+... .+...+.. ..+.|+|||+||+||..... ...-..+.... ++.++.+||.
T Consensus 95 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~ 172 (196)
T 2atv_A 95 HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL--ACAFYECSAC 172 (196)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSEEEECCTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh--CCeEEEECCC
Confidence 45678999999999886533221 11222221 34789999999999975321 11122222232 4678888886
No 427
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.08 E-value=0.00042 Score=65.74 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
...++|+|||.+|||||||+|.|+|..... ...+..+... ..+.+.. .+.+.|++|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 456899999999999999999998754321 1222222222 2222332 24566888763
No 428
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.08 E-value=0.0014 Score=70.45 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV 393 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~ 393 (604)
.+..++++|+|||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999987644
No 429
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.07 E-value=0.00014 Score=79.31 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCCccccCc
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRT 398 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i 398 (604)
.-.++|||+||||||||+++|+|++.+..|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V 324 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 324 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence 45799999999999999999999987765543
No 430
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.07 E-value=0.00023 Score=66.62 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV 393 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~ 393 (604)
..++|+|+|.+|||||||++.|.|....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 4589999999999999999999987643
No 431
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.07 E-value=0.00029 Score=66.87 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=52.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHhH--HHHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPLV--LAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~~--~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..++|+|||+||+||.+...+ ..-..+.... ++.++.+||.
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~ 169 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW--GATFMESSAR 169 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECCTT
T ss_pred HHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh--CCeEEEEeCC
Confidence 4567999999999987643211 112222222 236899999999999754321 1112222222 3577888886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
.+.|+.++++.+...
T Consensus 170 ----------------------------~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 170 ----------------------------ENQLTQGIFTKVIQE 184 (201)
T ss_dssp ----------------------------CHHHHHHHHHHHHHH
T ss_pred ----------------------------CCCCHHHHHHHHHHH
Confidence 567888888777553
No 432
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00043 Score=66.18 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=43.9
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-hhHHHHhhc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 193 RVLEMSDIILIIIDIRYPCLMFP-PTLYDYVTG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
..+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||..... ......+.... ++.++.+||+
T Consensus 94 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~ 171 (201)
T 2ew1_A 94 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ--DMYYLETSAK 171 (201)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCCEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--CCEEEEEeCC
Confidence 35678999999999987653322 112222221 24688999999999974321 11222233333 3577888886
No 433
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.06 E-value=0.00082 Score=64.12 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||++.+.+..... ...+.+... ...+.... .+.+.|+||..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcH
Confidence 45899999999999999999998654221 111111111 11222332 46789999974
No 434
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.06 E-value=0.00022 Score=66.16 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee--EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF--QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~--q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|.+.... ....+..+..+ ..+.+.. .+.++|+||..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 3589999999999999999999875422 11122222222 2233332 46789999964
No 435
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.05 E-value=0.0017 Score=77.09 Aligned_cols=106 Identities=8% Similarity=-0.003 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCc-EEEEEeCCCCCCHHhH-----HHHHHHHHhhC---
Q psy3589 186 ETWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKD-MILVMNKIDLAPAPLV-----LAWKHYFQSKF--- 256 (604)
Q Consensus 186 e~wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~-~ILVlNK~DLv~~~~~-----~~w~~yf~~~~--- 256 (604)
++.+...+.+..+|++|+|+|+.++...........+. ..+.| +|+|+||+|+++...+ ....+++....
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~-~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGR-QVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHH-HHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHH-HcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 45677788899999999999999986544333333333 34677 7899999999863221 23444554432
Q ss_pred CCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 257 PKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 257 p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
..++++++||+...+. . . .-..|+.+|++.+...++
T Consensus 450 ~~vp~IpvSAktG~ng---~---------------~--~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 450 DDTPIVRGSALKALEG---D---------------A--EWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTCCEEECCSTTTTTC---C---------------H--HHHHHHHHHHHHHHHTSC
T ss_pred cceeEEEEEeccCCCC---C---------------c--cccccchhhHhHHhhhcC
Confidence 1367899998732100 0 0 012578888888877554
No 436
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.05 E-value=0.001 Score=70.16 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=58.6
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcE-EEEEe-CCCCCCHHhHH----HHHHHHHhh-CCCce
Q psy3589 188 WRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDM-ILVMN-KIDLAPAPLVL----AWKHYFQSK-FPKLT 260 (604)
Q Consensus 188 wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~-ILVlN-K~DLv~~~~~~----~w~~yf~~~-~p~~~ 260 (604)
++.+.+.+..+|++|+|+| ..............+. ..+.|. |+|+| |+|+ +..... ...+++... +..++
T Consensus 74 ~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~-~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ 150 (370)
T 2elf_A 74 LKSLITALNISDIAVLCIP-PQGLDAHTGECIIALD-LLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWE 150 (370)
T ss_dssp HHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHH-HTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCE
T ss_pred HHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHH-HcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4455667789999999999 6544321222222222 346677 99999 9999 754332 233444332 12468
Q ss_pred EEE--EeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 261 ILC--FTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 261 vv~--~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
+++ +||+... .+.|+++|++.+.+.+
T Consensus 151 ii~~~~SA~~~~-------------------------~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 151 CISLNTNKSAKN-------------------------PFEGVDELKARINEVA 178 (370)
T ss_dssp EEECCCCTTSSS-------------------------TTTTHHHHHHHHHHHH
T ss_pred EEecccccccCc-------------------------CCCCHHHHHHHHHhhc
Confidence 888 8887100 1678888888776643
No 437
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.11 E-value=9.2e-05 Score=70.49 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=34.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCH
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPA 242 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~ 242 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..++|+|+|+||+||.+.
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 46789999999999887654332 22233321 126899999999999864
No 438
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.04 E-value=0.00083 Score=63.02 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCccC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGLVF 424 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~~ 424 (604)
..++|+|+|.+|||||||++.+++..... ...+.+... ...+.... .+.++|+||...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCc
Confidence 45899999999999999999998764221 111111111 11122222 356789999753
No 439
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00085 Score=62.94 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc-ccCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~-~g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||++.|++..... ...+.+... ...+.... .+.+.|+||..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCc
Confidence 44799999999999999999999764221 111111111 11222222 35679999974
No 440
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00042 Score=67.07 Aligned_cols=87 Identities=18% Similarity=0.112 Sum_probs=52.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHh---hc--cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEee
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYV---TG--TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTS 266 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv---~~--~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa 266 (604)
.+..+|++|+|+|+.++..+ ..+..++ .. ..+.|+|||+||+||..... ......+.... ++.++.+||
T Consensus 82 ~~~~~d~vilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa 157 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSY--ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN--QLLFTETSA 157 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHH--HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT--TCEEEECCC
T ss_pred HhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEEeC
Confidence 35689999999999887532 1222222 21 23689999999999975321 12222333332 467888888
Q ss_pred ccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 267 YPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
. .+.|+.++++.+...+.
T Consensus 158 ~----------------------------~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 158 L----------------------------NSENVDKAFEELINTIY 175 (223)
T ss_dssp C-----------------------------CCCHHHHHHHHHHHHT
T ss_pred C----------------------------CCCCHHHHHHHHHHHHH
Confidence 6 55678888887766543
No 441
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.01 E-value=0.00078 Score=63.19 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
...++|+|+|.+|||||||+|.+++..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456899999999999999999877654
No 442
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.00 E-value=0.00022 Score=81.63 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=48.3
Q ss_pred hhcCEEEEEEecCCCCCCCCh-hHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHh-h----CCCceEEEEeecc
Q psy3589 196 EMSDIILIIIDIRYPCLMFPP-TLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQS-K----FPKLTILCFTSYP 268 (604)
Q Consensus 196 E~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~-~----~p~~~vv~~Sa~~ 268 (604)
+.+|+||+|+|++.++...+. .+...+. ..++|+|+|+||+|++++.... ...... . .+...++++||..
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~-~~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~ 261 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVD-PQGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKD 261 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHC-TTCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEE
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHH-hcCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccc
Confidence 689999999999998765554 4666665 4578999999999999765321 112211 1 2335677888863
No 443
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.00 E-value=0.00076 Score=75.55 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAP 241 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~ 241 (604)
.+..+|++|+|+|+.+++.........++. ..+.|+|+|+||+|+.+
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~-~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILR-MYRTPFVVAANKIDRIH 136 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHH-HTTCCEEEEEECGGGST
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHH-HcCCeEEEEeccccccc
Confidence 356799999999999876433333334444 46789999999999975
No 444
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.00 E-value=0.00019 Score=75.08 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=40.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeE--EEEec--CCeEEecCCCccC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ--TIFLT--DNIRLCDCPGLVF 424 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q--~~~~~--~~~~l~D~pGl~~ 424 (604)
.|+|||.+|||||||||.|++... .++..+++|.... .+.+. ..+.+.|+||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 589999999999999999998653 4566666665432 33333 4578899999753
No 445
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.99 E-value=7.3e-05 Score=70.32 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
.++|+|+||||||||+++|+|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 68999999999999999999998775
No 446
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.99 E-value=0.00022 Score=71.10 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---CCCCccccCcC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIM---GRKVVSVSRTP 399 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~---G~~~~~~g~i~ 399 (604)
..|+|+|+||||||||+++|+ |+..++.|.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 579999999999999999999 98877766654
No 447
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.0012 Score=63.87 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..++|+|||.+|||||||+|.++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45799999999999999999999854
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.96 E-value=0.00083 Score=64.36 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccccee-EEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF-QTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~-q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||+|.|++...... ..+..+..+ ..+.... .+.+.|+||..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 458999999999999999999998653211 111111111 1222222 35778999964
No 449
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.95 E-value=0.003 Score=64.42 Aligned_cols=29 Identities=14% Similarity=-0.090 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVS 394 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~ 394 (604)
....++++|+||+||||++..|++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44578999999999999999999987653
No 450
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.95 E-value=0.00076 Score=72.29 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=60.2
Q ss_pred HHHHHhhhcCEEEEEEecC-CCCCCCCh---hHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHHHhhCCCceEEEEe
Q psy3589 190 QLWRVLEMSDIILIIIDIR-YPCLMFPP---TLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR-~Pl~~~~~---~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf~~~~p~~~vv~~S 265 (604)
+..+.++++|++|+|+|+. .|+..... .+..|......+|.|||+||+|+........+.+++... +..++++|
T Consensus 228 ~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~--g~~vi~iS 305 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE--GLAVLPVS 305 (416)
T ss_dssp HHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEECC
T ss_pred HHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc--CCeEEEEE
Confidence 3456689999999999995 33321111 122221111258999999999998875555666666544 45788888
Q ss_pred eccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 266 SYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
|. ++.|+.+|++.+...
T Consensus 306 A~----------------------------~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 306 AL----------------------------TGAGLPALKEALHAL 322 (416)
T ss_dssp TT----------------------------TCTTHHHHHHHHHHH
T ss_pred CC----------------------------CccCHHHHHHHHHHH
Confidence 86 557888888877664
No 451
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.94 E-value=0.0003 Score=66.29 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMG 389 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G 389 (604)
.++|+|+||||||||+++|++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999987
No 452
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.94 E-value=0.00028 Score=65.97 Aligned_cols=27 Identities=26% Similarity=0.119 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSV 395 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~ 395 (604)
.++|+|+||||||||+.+|.+++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~ 54 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 578999999999999999998765443
No 453
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.94 E-value=0.0014 Score=63.94 Aligned_cols=44 Identities=7% Similarity=-0.199 Sum_probs=30.0
Q ss_pred CCCcccccCCCcCCC--CHHH-HHHHHHh-hhhcCCCCeEEEEecChhh
Q psy3589 522 PPQYLSKQEYWEKHP--DIDE-ILWIQAR-TKEEPYKHPLVSVSDDEAE 566 (604)
Q Consensus 522 pP~lLLLDEP~T~~L--D~~~-~~~L~~~-~~l~~~g~tVIiVTHD~~e 566 (604)
+|+++++|+| +..+ |... ...+..+ ..+++.|.|||+++|....
T Consensus 128 ~~~~vviD~~-~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 128 NAKRVVVDSV-TTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp TCCEEEEETS-GGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred CCCEEEECCc-hHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5899999999 8877 4422 3333444 2356779999999998765
No 454
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.93 E-value=0.00016 Score=68.52 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCccc--ceeEEEEecC---CeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHT--KHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t--~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
+..++|+|+|.+|||||||+|.|++..... ...+..+ .....+.... .+.++|+||..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 345899999999999999999999865321 1112222 2223333333 36788999964
No 455
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.93 E-value=0.00039 Score=64.89 Aligned_cols=48 Identities=27% Similarity=0.243 Sum_probs=32.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc-cCCCcEEEEEeCCCCCC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG-TLGKDMILVMNKIDLAP 241 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~-~~~K~~ILVlNK~DLv~ 241 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 3578999999999987653321 122233332 24789999999999974
No 456
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.91 E-value=0.0011 Score=62.30 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=42.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhcc-----CCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEe
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTGT-----LGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFT 265 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~~-----~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~S 265 (604)
.+..+|++|+|+|+.++..+..- .+...+... .+.|+|||+||+||..... .....++.... ++.++.+|
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~S 165 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF--GCLFFEVS 165 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc--CCcEEEEe
Confidence 45679999999999876432111 111222211 4789999999999964321 11222333333 35788888
Q ss_pred e-c
Q psy3589 266 S-Y 267 (604)
Q Consensus 266 a-~ 267 (604)
| .
T Consensus 166 a~~ 168 (187)
T 3c5c_A 166 ACL 168 (187)
T ss_dssp SSS
T ss_pred ecC
Confidence 8 5
No 457
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.91 E-value=0.00025 Score=76.09 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccCc
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRT 398 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i 398 (604)
.++|+|||||||||||++|+|...+..|.+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 589999999999999999999987765544
No 458
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.91 E-value=0.0016 Score=61.75 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=43.0
Q ss_pred hhhcCEEEEEEecCCCCCCCC-hhHHHHhhc---cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 195 LEMSDIILIIIDIRYPCLMFP-PTLYDYVTG---TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~-~~L~~yv~~---~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||.||+||..... ......+... + ++.++.+||.
T Consensus 94 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-~-~~~~~e~Sa~ 170 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-L-SCKHIETSAA 170 (195)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-T-TCEEEEEBTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-h-CCEEEEEcCC
Confidence 457999999999987654322 112222221 13789999999999975321 1222223222 3 3678888886
No 459
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.00064 Score=65.42 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=54.6
Q ss_pred hcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH--hHHHHHHHHHhhCCCceEEEEeeccCccccc
Q psy3589 197 MSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP--LVLAWKHYFQSKFPKLTILCFTSYPTYNLRN 274 (604)
Q Consensus 197 ~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~--~~~~w~~yf~~~~p~~~vv~~Sa~~~~~~~~ 274 (604)
.++.+++|+|+..+.. .+..+.. ..++|.++|+||+|+.+.. .......++....+..+++.+||.
T Consensus 129 ~~~~~i~vvd~~~~~~----~~~~~~~-~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~------- 196 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD----VVEKHPE-IFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLK------- 196 (221)
T ss_dssp SCSEEEEEEEGGGCTT----HHHHCHH-HHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTT-------
T ss_pred ccCcEEEEEeCCCcch----hhhhhhh-hhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecC-------
Confidence 3578999999987531 2222222 2357899999999997542 344455556555556788888886
Q ss_pred ccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 275 NIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
++.|+.+|++.+...
T Consensus 197 ---------------------~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 197 ---------------------TGKGFEEWIDFLRGI 211 (221)
T ss_dssp ---------------------TTBTHHHHHHHHHHH
T ss_pred ---------------------CCCCHHHHHHHHHHH
Confidence 567888888877654
No 460
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.90 E-value=0.00019 Score=77.08 Aligned_cols=61 Identities=38% Similarity=0.392 Sum_probs=37.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEE--EEecC--CeEEecCCCccCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQT--IFLTD--NIRLCDCPGLVFP 425 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~--~~~~~--~~~l~D~pGl~~p 425 (604)
...++|+|+|..|+|||||+|.|++.....++..++.|..... +.... .+.++||||+...
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 3458999999999999999999999876555667777765433 22222 5789999998643
No 461
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.90 E-value=0.00058 Score=63.05 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..++|+|+|.+|||||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999998654
No 462
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.87 E-value=0.00044 Score=71.35 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
-.++|+|+||||||||||+|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 358899999999999999999986
No 463
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.86 E-value=0.00046 Score=66.17 Aligned_cols=48 Identities=27% Similarity=0.243 Sum_probs=32.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--hhHHHHhhc-cCCCcEEEEEeCCCCCC
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFP--PTLYDYVTG-TLGKDMILVMNKIDLAP 241 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~--~~L~~yv~~-~~~K~~ILVlNK~DLv~ 241 (604)
.+..+|++|+|+|+.++..+.. ..+...+.. ..+.|+|||+||+||.+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 4578999999999987653322 122233332 24689999999999974
No 464
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.86 E-value=0.00037 Score=76.71 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCccccC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSR 397 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~~~~g~ 397 (604)
.++|+|+||||||||||+|+|+.++..|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~gi 290 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKV 290 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCE
Confidence 48999999999999999999999876554
No 465
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.84 E-value=0.00045 Score=65.93 Aligned_cols=24 Identities=13% Similarity=0.327 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..++|+|+||||||||+++|++..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 469999999999999999999864
No 466
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.83 E-value=0.00039 Score=64.26 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
.|+|+|+||||||||.++|++.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 467
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.83 E-value=0.0016 Score=68.11 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=38.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh----HHHHHHHHHhhCC-----CceEEEE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL----VLAWKHYFQSKFP-----KLTILCF 264 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~----~~~w~~yf~~~~p-----~~~vv~~ 264 (604)
+.+.+|++++|+|+..+.. ...+...+ ..++.|+|+||+|+.+... ...+...+....+ ..+++++
T Consensus 184 l~~~~d~vl~V~d~~~~~~--~~~i~~~i---l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~i 258 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDE--LQGIKRGI---IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRI 258 (349)
T ss_dssp HHTTCSEEEEEECCC-----------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEEC
T ss_pred HHhhCCEEEEEEcCCcchh--HHHhHHHH---HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 4689999999999976531 11121111 2468899999999986542 2223222222111 3467888
Q ss_pred eec
Q psy3589 265 TSY 267 (604)
Q Consensus 265 Sa~ 267 (604)
||.
T Consensus 259 SA~ 261 (349)
T 2www_A 259 SAR 261 (349)
T ss_dssp CTT
T ss_pred ecC
Confidence 886
No 468
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.77 E-value=0.0014 Score=68.57 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGR 390 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~ 390 (604)
.+.|.|+||+|||||+..|+..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998887754
No 469
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.76 E-value=0.0014 Score=62.98 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCccc-cCcCcccceeEEEEecC---CeEEecCCCcc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVVSV-SRTPGHTKHFQTIFLTD---NIRLCDCPGLV 423 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~-g~i~g~t~~~q~~~~~~---~~~l~D~pGl~ 423 (604)
..++|+|+|.+|||||||++.|++...... ..+.+.... ..+.... .+.+.|++|..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCH
Confidence 458999999999999999999987543211 111121111 1122222 35678999964
No 470
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.75 E-value=0.0017 Score=74.14 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=39.0
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCChh-HHHHhhccCCCcEEEEEeCCCCCCHH
Q psy3589 189 RQLWRVLEMSDIILIIIDIRYPCLMFPPT-LYDYVTGTLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 189 RQlwrviE~sDiVl~VvDaR~Pl~~~~~~-L~~yv~~~~~K~~ILVlNK~DLv~~~ 243 (604)
..++..+..+|+||+|+|+.+++...... +...+. ..++|+|+|+||+|+++..
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~-~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK-GRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGG
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH-hhCCCEEEEEECccccccc
Confidence 45567889999999999999886543322 223343 3467899999999997653
No 471
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.74 E-value=0.00012 Score=69.35 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=46.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHH---hhc--cCCCcEEEEEeCCCCCCHHhHH-HHHHHHHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDY---VTG--TLGKDMILVMNKIDLAPAPLVL-AWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~y---v~~--~~~K~~ILVlNK~DLv~~~~~~-~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..+ ..+..+ +.. ..+.|+|||+||+||.+..... .-...|...+ ++.++.+||+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~vSA~ 178 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLETSAK 178 (199)
T ss_dssp --CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT-TCCBCCCCC-
T ss_pred HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc-CCeEEEEECC
Confidence 34679999999999886532 122223 222 2368999999999997653211 0011222222 3567777876
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQT 309 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~ 309 (604)
.+.|+.++++.+..
T Consensus 179 ----------------------------~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 179 ----------------------------NATNVEQSFMTMAA 192 (199)
T ss_dssp ------------------------------HHHHHHHHHHTT
T ss_pred ----------------------------CCCCHHHHHHHHHH
Confidence 56788888877654
No 472
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00085 Score=75.48 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCC----CCChhHHH---HhhccCC-CcEEEEEeCCCCCCH--Hh----HHHHHHHH
Q psy3589 187 TWRQLWRVLEMSDIILIIIDIRYPCL----MFPPTLYD---YVTGTLG-KDMILVMNKIDLAPA--PL----VLAWKHYF 252 (604)
Q Consensus 187 ~wRQlwrviE~sDiVl~VvDaR~Pl~----~~~~~L~~---yv~~~~~-K~~ILVlNK~DLv~~--~~----~~~w~~yf 252 (604)
+.+.....+..+|++|+|+||+++.+ ...+.... .+. ..+ +++|||+||+|+++. .. ......++
T Consensus 258 f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l 336 (611)
T 3izq_1 258 FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 336 (611)
T ss_dssp HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcCCCeEEEEEecccccchhHHHHHHHHHHHHHHH
Confidence 45667778899999999999987421 01122222 222 234 569999999999872 11 23334444
Q ss_pred HhhCC---CceEEEEeeccC
Q psy3589 253 QSKFP---KLTILCFTSYPT 269 (604)
Q Consensus 253 ~~~~p---~~~vv~~Sa~~~ 269 (604)
....- ++.++++||...
T Consensus 337 ~~~g~~~~~~~~i~vSA~tG 356 (611)
T 3izq_1 337 VDIGFFEDNINWVPISGFSG 356 (611)
T ss_dssp HHHTCCGGGCEEEECCTTTC
T ss_pred HhhcccccCccEEeeecccC
Confidence 43321 367899999744
No 473
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.72 E-value=0.00051 Score=70.23 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=34.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh--hHHHHhhc-cCCCcEEEEEeCCCCCCH
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP--TLYDYVTG-TLGKDMILVMNKIDLAPA 242 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~--~L~~yv~~-~~~K~~ILVlNK~DLv~~ 242 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..++|+|||+||+||.+.
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 57889999999999887543221 12233332 237899999999999654
No 474
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.00043 Score=66.29 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCCCCc
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGRKVV 393 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~~~~ 393 (604)
....+||+|+||||||||+++|++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3467999999999999999999997654
No 475
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.70 E-value=0.0032 Score=64.49 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=46.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCCh-hHHHHhhc----cCCCcEEEEEeCCCCCCHHhHH-------HHHHHHHhhCC--Cc
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPP-TLYDYVTG----TLGKDMILVMNKIDLAPAPLVL-------AWKHYFQSKFP--KL 259 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~-~L~~yv~~----~~~K~~ILVlNK~DLv~~~~~~-------~w~~yf~~~~p--~~ 259 (604)
.+..+|++|+|+|+.++..+... .+...+.. ..+.|+|||+||+||.....+. .-...+...++ .+
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~ 156 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 45689999999999987543221 11222321 3478999999999999844332 22233333332 36
Q ss_pred eEEEEeec
Q psy3589 260 TILCFTSY 267 (604)
Q Consensus 260 ~vv~~Sa~ 267 (604)
.++.+||+
T Consensus 157 ~~~~tSa~ 164 (307)
T 3r7w_A 157 IGFPTSIW 164 (307)
T ss_dssp EEEECCTT
T ss_pred EEEEeeec
Confidence 78888886
No 476
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.69 E-value=0.0057 Score=57.97 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=57.5
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhH----HHHHHHHHhhCCCceEEEEeeccCc
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLV----LAWKHYFQSKFPKLTILCFTSYPTY 270 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~----~~w~~yf~~~~p~~~vv~~Sa~~~~ 270 (604)
...+|.+++++|+.++.......+..++. ..+.|.++|.||+|+++..++ .....++......+.++++||.
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal--- 181 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAV-DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL--- 181 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHH-HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT---
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHH-HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeec---
Confidence 35689999999999886543334445544 457899999999999986532 2333334332223566777776
Q ss_pred ccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Q psy3589 271 NLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIV 311 (604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~ 311 (604)
.+.|+.++++.+.++.
T Consensus 182 -------------------------~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 182 -------------------------KKQGVDKLRQKLDTWF 197 (210)
T ss_dssp -------------------------TTBSHHHHHHHHHHHH
T ss_pred -------------------------CCCCHHHHHHHHHHHH
Confidence 4567778877776643
No 477
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.69 E-value=0.0029 Score=72.20 Aligned_cols=61 Identities=23% Similarity=0.209 Sum_probs=42.6
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH---hHHHHHHHH
Q psy3589 191 LWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP---LVLAWKHYF 252 (604)
Q Consensus 191 lwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~---~~~~w~~yf 252 (604)
..+.+..+|.+|+|+|+..+.......+..++. ..++|+|+|+||+|+.... ....+...|
T Consensus 92 ~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~-~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l 155 (693)
T 2xex_A 92 VERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT-TYGVPRIVFVNKMDKLGANFEYSVSTLHDRL 155 (693)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHH-HTTCCEEEEEECTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHH-HcCCCEEEEEECCCccccchHHHHHHHHHHh
Confidence 345677899999999999877544444444444 4578999999999998643 233444444
No 478
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.68 E-value=0.0038 Score=71.20 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=39.3
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~ 243 (604)
...+.+..+|.+|+|+|+..+.......+..++. ..+.|+|+|+||+|+....
T Consensus 93 ~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 93 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-KYKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-HcCCCEEEEEECCCcccCC
Confidence 3456778899999999999877544444444443 4578999999999998643
No 479
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.67 E-value=0.00045 Score=77.49 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHhhhcCEEEEEEecCCCCCC-----CChh--HHHHhhccCCCc-EEEEEeCCCCCC--HHhH----HHHHHHH-HhhC-
Q psy3589 193 RVLEMSDIILIIIDIRYPCLM-----FPPT--LYDYVTGTLGKD-MILVMNKIDLAP--APLV----LAWKHYF-QSKF- 256 (604)
Q Consensus 193 rviE~sDiVl~VvDaR~Pl~~-----~~~~--L~~yv~~~~~K~-~ILVlNK~DLv~--~~~~----~~w~~yf-~~~~- 256 (604)
+.+..+|++|+|||+..+.+. .... ....+. ..+.| +|+|+||+||++ .... .....++ ....
T Consensus 274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~-~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~ 352 (592)
T 3mca_A 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR-ALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF 352 (592)
T ss_dssp C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH-HSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH-HcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCC
Confidence 456789999999999986421 1222 222222 34565 899999999986 3332 2333444 2221
Q ss_pred --CCceEEEEeeccC
Q psy3589 257 --PKLTILCFTSYPT 269 (604)
Q Consensus 257 --p~~~vv~~Sa~~~ 269 (604)
.++++|++||+..
T Consensus 353 ~~~~~~ii~iSA~~G 367 (592)
T 3mca_A 353 KTSNVHFVPISAISG 367 (592)
T ss_dssp CGGGEEEEEECSSSC
T ss_pred CccceEEEEEecccC
Confidence 1357899999854
No 480
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.65 E-value=0.00065 Score=67.47 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=35.4
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhc----cCCCcEEEEEe-CCCCCCH
Q psy3589 188 WRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTG----TLGKDMILVMN-KIDLAPA 242 (604)
Q Consensus 188 wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~----~~~K~~ILVlN-K~DLv~~ 242 (604)
-+.+|..+..+|++|+|+|+.. +......+...+.+ ...+|+|+|+| |+|+...
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 4455667889999999999975 22222223333332 12578888888 9999854
No 481
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.64 E-value=0.00035 Score=67.70 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..|+|+|+|||||||+.++|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 482
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.64 E-value=0.0042 Score=64.62 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=39.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHhHHHHHHHH----HhhCC-----CceEEEE
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVLAWKHYF----QSKFP-----KLTILCF 264 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~~~~w~~yf----~~~~p-----~~~vv~~ 264 (604)
++..+|++|+|+|+..+.... .+.... .++|.++|+||+|+.+......+...+ ....+ ...++++
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~i 240 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQ--GIKKGL---MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTC 240 (341)
T ss_dssp HHTTCSEEEEEECC------C--CCCHHH---HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEEC
T ss_pred HHHhCCEEEEEEeCCccHHHH--HHHHhh---hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEe
Confidence 468999999999987543211 111111 146789999999998764443332222 22111 3467888
Q ss_pred eec
Q psy3589 265 TSY 267 (604)
Q Consensus 265 Sa~ 267 (604)
||+
T Consensus 241 SA~ 243 (341)
T 2p67_A 241 SAL 243 (341)
T ss_dssp BGG
T ss_pred eCC
Confidence 886
No 483
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.62 E-value=0.0033 Score=61.47 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=31.4
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhh----ccCCCcEEEEEeCCCCCCHHhHH
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVT----GTLGKDMILVMNKIDLAPAPLVL 246 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~----~~~~K~~ILVlNK~DLv~~~~~~ 246 (604)
.+......+|++|+|+|+.... .........+. ....+|+|||+||+|++....+.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHhcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 3334456789999999987422 22222222222 12346999999999998765443
No 484
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.61 E-value=0.0012 Score=73.14 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=44.3
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHhhc-cCCCcEEEEEeCCCCCCHHh--HHHHHHHHHhhCCCceEEEEeec
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYVTG-TLGKDMILVMNKIDLAPAPL--VLAWKHYFQSKFPKLTILCFTSY 267 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~-~~~K~~ILVlNK~DLv~~~~--~~~w~~yf~~~~p~~~vv~~Sa~ 267 (604)
+..+|++|+|+|+..+ .....+...+.. ..++|+|||+||+|+.+... ......++... +.+++.+||.
T Consensus 119 l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~vSA~ 190 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI--ENRFHRISCK 190 (535)
T ss_dssp HHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG--TTCEEECCC-
T ss_pred ccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc--CCceEEEecC
Confidence 5569999999999864 122223333332 24589999999999976432 33344455444 3568888987
No 485
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.61 E-value=0.00093 Score=69.08 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
..+..+||+|+||||||||+++|.++..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4557899999999999999999999865
No 486
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0013 Score=73.98 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
...++|+|||++|+|||||+|.|++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 346899999999999999999999763
No 487
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.60 E-value=0.0024 Score=63.23 Aligned_cols=100 Identities=14% Similarity=0.041 Sum_probs=58.0
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhcc-----CCCcEEEEEeCCCCCCHHhHH-------HHHHHHHhh
Q psy3589 188 WRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGT-----LGKDMILVMNKIDLAPAPLVL-------AWKHYFQSK 255 (604)
Q Consensus 188 wRQlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~-----~~K~~ILVlNK~DLv~~~~~~-------~w~~yf~~~ 255 (604)
.+-++.....+|+||+|+|+.. +......+.+++.+. .++|+|||.||+||....... ...+.+...
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 3344455589999999999974 322223334444421 267899999999997632111 011222233
Q ss_pred CCCceEEEEeeccCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Q psy3589 256 FPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTIVQ 312 (604)
Q Consensus 256 ~p~~~vv~~Sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~~~ 312 (604)
+ +.++++|++.... ...+.|+.+|++.+..++.
T Consensus 175 ~-g~~~~~~~~~~~~-----------------------~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 175 C-GGRVCAFDNRATG-----------------------REQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp T-TTCEEECCTTCCH-----------------------HHHHHHHHHHHHHHHHHHH
T ss_pred c-CCeEEEEeCCCCc-----------------------cccHHHHHHHHHHHHHHHH
Confidence 3 2356667654210 0135788899988877654
No 488
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.60 E-value=0.001 Score=63.49 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCCCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGRKV 392 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~~~ 392 (604)
...++|+|+||||||||+++|++.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999865
No 489
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.60 E-value=0.0016 Score=70.22 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHCC
Q psy3589 366 GVLTIGCVGQPNVGKSSLMNAIMGR 390 (604)
Q Consensus 366 ~~~~vgLVG~nGvGKSTLLn~L~G~ 390 (604)
....|+|+|++++|||||||.|.|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3467999999999999999999974
No 490
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.59 E-value=0.0015 Score=71.43 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEe-cCCeEEecCCCcc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFL-TDNIRLCDCPGLV 423 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~-~~~~~l~D~pGl~ 423 (604)
...++|+|||.+|||||||||.|++........+.+ .....+.. ...+.++|+||..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~--~~~~~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS--EEEEEEESSSCEEEEEEECCCG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc--eeEEEEEeCCEEEEEEECCCcH
Confidence 346899999999999999999999876443222222 22222222 2346789999954
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.58 E-value=0.002 Score=60.11 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=42.9
Q ss_pred hhhcCEEEEEEecCCCCCCCChhHHHHhh---c-cCCCcEEEEEeCCCCCCHHhHH----HHHHHHHhhCCCce----EE
Q psy3589 195 LEMSDIILIIIDIRYPCLMFPPTLYDYVT---G-TLGKDMILVMNKIDLAPAPLVL----AWKHYFQSKFPKLT----IL 262 (604)
Q Consensus 195 iE~sDiVl~VvDaR~Pl~~~~~~L~~yv~---~-~~~K~~ILVlNK~DLv~~~~~~----~w~~yf~~~~p~~~----vv 262 (604)
+..+|++++|+|+.++..++ ..+..++. . ..+.|+|||.||+||....... .....|...+ ++. ++
T Consensus 77 ~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 154 (184)
T 2zej_A 77 MTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR-GFPAIRDYH 154 (184)
T ss_dssp HHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCT-TSCEEEEEE
T ss_pred ccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhc-CCcchhheE
Confidence 45689999999998864211 12323322 1 2468999999999998765432 2233343333 233 66
Q ss_pred EEeec
Q psy3589 263 CFTSY 267 (604)
Q Consensus 263 ~~Sa~ 267 (604)
.+||+
T Consensus 155 ~~Sa~ 159 (184)
T 2zej_A 155 FVNAT 159 (184)
T ss_dssp ECCTT
T ss_pred EEecc
Confidence 77775
No 492
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.58 E-value=0.0011 Score=61.46 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGRK 391 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~~ 391 (604)
..++|+|+||||||||+++|++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 469999999999999999998753
No 493
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.58 E-value=0.0011 Score=63.18 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q psy3589 368 LTIGCVGQPNVGKSSLMNAIMGR 390 (604)
Q Consensus 368 ~~vgLVG~nGvGKSTLLn~L~G~ 390 (604)
..+||+|+|||||||+.++|+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999983
No 494
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.56 E-value=0.00025 Score=78.39 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=55.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHHh--H-HHHHHH---HHhhCCCceEEEEeec
Q psy3589 194 VLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPL--V-LAWKHY---FQSKFPKLTILCFTSY 267 (604)
Q Consensus 194 viE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~~--~-~~w~~y---f~~~~p~~~vv~~Sa~ 267 (604)
.+..+|++|+|+|+.++..........++. ..+.|+|+|+||+|+.+... . .....+ .......++++++||+
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~-~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAK-DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHH-TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHH-HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 356799999999999876543333333443 45789999999999975321 1 111111 1111123567788886
Q ss_pred cCcccccccccccchhhhHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy3589 268 PTYNLRNNIENSNKKGLQVRRRRGKMKMAAEGAKKLLEACQTI 310 (604)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ll~~i~~~ 310 (604)
++.|+.+|++.+..+
T Consensus 151 ----------------------------tG~GI~eLle~I~~l 165 (537)
T 3izy_P 151 ----------------------------TGENMMALAEATIAL 165 (537)
T ss_dssp ----------------------------SSCSSHHHHHHHHHH
T ss_pred ----------------------------CCCCchhHHHHHHHh
Confidence 566788888877664
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.55 E-value=0.0016 Score=70.98 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy3589 369 TIGCVGQPNVGKSSLMNAIMGR 390 (604)
Q Consensus 369 ~vgLVG~nGvGKSTLLn~L~G~ 390 (604)
-+.|+||||+|||||+++|++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999985
No 496
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.52 E-value=0.0054 Score=67.73 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=39.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCChhHHHHhhccCCCcEEEEEeCCCCCCHH
Q psy3589 190 QLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 190 QlwrviE~sDiVl~VvDaR~Pl~~~~~~L~~yv~~~~~K~~ILVlNK~DLv~~~ 243 (604)
..++.+..+|.+|+|+|+..+.......+..++. ..+.|+|+|+||+|+....
T Consensus 98 ~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~-~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 98 DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR-LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT-TTTCCEEEEEECTTSCCSC
T ss_pred HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH-HcCCCEEEEEcCcCCcccc
Confidence 3556788999999999999876433333434433 4578999999999997643
No 497
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.51 E-value=0.00073 Score=68.31 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHhhhcCE-EEEEEecCCCCCCCCh-hHHHHhhccCCCcEEEEEeCCCCCCHH
Q psy3589 192 WRVLEMSDI-ILIIIDIRYPCLMFPP-TLYDYVTGTLGKDMILVMNKIDLAPAP 243 (604)
Q Consensus 192 wrviE~sDi-Vl~VvDaR~Pl~~~~~-~L~~yv~~~~~K~~ILVlNK~DLv~~~ 243 (604)
...+..+|. ||+|+|+..++..... .+...+. ..++|+|+|+||+|+++..
T Consensus 156 ~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~-~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 156 MQFVTKENCLILAVSPANSDLANSDALKIAKEVD-PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC-TTCSSEEEEEECGGGSCTT
T ss_pred HHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC-CCCCeEEEEEEccccCCCC
Confidence 345666774 4589999987654332 2444443 3578999999999998754
No 498
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.50 E-value=0.00092 Score=65.41 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHCC
Q psy3589 367 VLTIGCVGQPNVGKSSLMNAIMGR 390 (604)
Q Consensus 367 ~~~vgLVG~nGvGKSTLLn~L~G~ 390 (604)
...++|+|+||||||||+++|+|.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999997
No 499
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.50 E-value=0.0015 Score=67.63 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCCCCccccCcCcccceeEEEEec-CCeEEecCCCc
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLT-DNIRLCDCPGL 422 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~~~~~~g~i~g~t~~~q~~~~~-~~~~l~D~pGl 422 (604)
...++|+|+|.+|||||||++.|.+...... .+-.+.....+... ..+.++|+||.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~pT~~~~~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EEETTEEEEEEEETTEEEEEEECC--
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc--ccccceEEEEEecCcEEEEEEECCCC
Confidence 3557999999999999999999988664322 22111122222222 24678999994
No 500
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.49 E-value=0.0023 Score=68.96 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHCC
Q psy3589 365 SGVLTIGCVGQPNVGKSSLMNAIMGR 390 (604)
Q Consensus 365 ~~~~~vgLVG~nGvGKSTLLn~L~G~ 390 (604)
...++|+++|.+|+|||||++.|++.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34589999999999999999999654
Done!