RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3589
(604 letters)
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 79.5 bits (195), Expect = 4e-17
Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 16/174 (9%)
Query: 356 NYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIR 415
+ + K + +G PNVGKS+L+N + + + PG T Q + + +
Sbjct: 101 DRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELE 160
Query: 416 LCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPD----- 470
L D PG+++P + V + +++ +Q +A ++ L +P+
Sbjct: 161 LLDTPGILWPKFEDE--LVGLRLAVTGAIKDSIINLQDVAVF--GLRFLEEHYPERLKER 216
Query: 471 ---DDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELL---RMATEGRICL 518
D+ ++ D +KR + G + + ++ R GR+
Sbjct: 217 YGLDEIPEDIAELFDAIGEKRGCLM-SGGLINYDKTTEVIIRDIRTEKFGRLSF 269
Score = 58.3 bits (140), Expect = 6e-10
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 187 TWRQLWRVLEMSDIILIIIDIRYPCLMFPPTLYDYVTGTLGKDMILVMNKIDLAPAPLVL 246
R++ L++ DI+ ++D R P P + D + K I+++NK D A A +
Sbjct: 5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK---NKPRIMLLNKADKADAAVTQ 61
Query: 247 AWKHYFQSKFPKLTILCFTSYPTYNLRNNIENSNKKGLQVRRRRGKMK 294
WK +F+++ + + + N + R R +K
Sbjct: 62 QWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVK 109
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 53.6 bits (127), Expect = 6e-09
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%)
Query: 361 EKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCP 420
+K G + I VG+PNVGKS+L+N ++G+K+ SR T+H T+
Sbjct: 1 DKSYCGFIAI--VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV 58
Query: 421 GLVFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDI 480
K + + + V ++ E + E + +
Sbjct: 59 DTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVIL 118
Query: 481 C 481
Sbjct: 119 A 119
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 52.8 bits (125), Expect = 1e-08
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 10/123 (8%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKV 428
T+ VG+PNVGKS+L N ++ +K V G T+ + +
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV--- 58
Query: 429 PKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKR 488
+ ++ + DL+ + + ++ +
Sbjct: 59 -------FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD 111
Query: 489 SYM 491
+ +
Sbjct: 112 TIL 114
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 52.0 bits (123), Expect = 3e-08
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPG 421
TI G+ NVGKS+L+ + G+K V + PG T+ I N ++ D PG
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIE-WKNHKIIDMPG 52
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 51.1 bits (121), Expect = 5e-08
Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 17/129 (13%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN---IRLCDCPGLVFP 425
+G VG P+VGKS+L++ + K + TD+ + D PGL+
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 426 SKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWA 485
+ L + ++++ ++ ++ + + + + +
Sbjct: 63 AHQGVGLG--------------HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQEL 108
Query: 486 QKRSYMTAK 494
+ + +
Sbjct: 109 SEYNLRLTE 117
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 50.8 bits (120), Expect = 6e-08
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 20/128 (15%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH---FQTIFLTDNIRLCDCPGLVFPS 426
+G VG PN GKSSL+ A+ + + L D PG++ +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 427 KVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQ 486
K L +++L LL++ D+ +
Sbjct: 64 SEGKGL-----------------GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGA 106
Query: 487 KRSYMTAK 494
+ +
Sbjct: 107 YDPALLRR 114
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 50.0 bits (118), Expect = 7e-08
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 18/127 (14%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN---IRLCDCPGLVF 424
L + VG+PNVGKS+L+N ++ V+ PG T+ + + R+ D G+
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 425 PSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGW 484
+ L E + L E +L + I +
Sbjct: 61 ETN---------------DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI 105
Query: 485 AQKRSYM 491
KR +
Sbjct: 106 KNKRYLV 112
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 51.4 bits (122), Expect = 1e-07
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIR 415
LTI +G+ VGKSS +N+I+G +VVS+S + +
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF 80
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 49.4 bits (116), Expect = 2e-07
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 361 EKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCP 420
EK SG + I VG+PNVGKS+L+N ++G KV +S P T+ LT+ R
Sbjct: 1 EKTYSGFVAI--VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFV 58
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 48.2 bits (113), Expect = 6e-07
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 3/154 (1%)
Query: 364 KSGVLTIGCVGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTDNIRLCDCPGL 422
+ G+ I G+ NVGKSS +N+++ RK ++ S PG T+ + D + D PG
Sbjct: 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGY 79
Query: 423 VFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICD 482
F + I ++ + + +DL E+ I
Sbjct: 80 GFAKVSKSERE--AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV 137
Query: 483 GWAQKRSYMTAKTGRYDSYRAANELLRMATEGRI 516
++ K + + L + E +
Sbjct: 138 IVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 49.4 bits (117), Expect = 7e-07
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 13/108 (12%)
Query: 321 ERKIAEEMHLEYEDVEEEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGK 380
RKI + L ++ ++ + ++ S VL + G+ GK
Sbjct: 17 GRKIISQEILNLIELRMRAGNIQ-------LTNSAISDALKEIDSSVLNVAVTGETGSGK 69
Query: 381 SSLMNAIMGRKV----VSVSRTPGHTK--HFQTIFLTDNIRLCDCPGL 422
SS +N + G + + T H N+ D PG+
Sbjct: 70 SSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 46.7 bits (109), Expect = 1e-06
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 1/118 (0%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-HTKHFQTIFLTDNIRLCDCPGLVFPS 426
+ + G+PN GKSSL+NA+ GR+ V+ G + D + L
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 427 KVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGW 484
+ ++ + + D + I + I
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 119
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 47.0 bits (110), Expect = 1e-06
Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 29/186 (15%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN---IRLCDCPGLVF 424
+ + VG+PNVGKS+L NAI+ ++ VS PG T+ + + D GL
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68
Query: 425 PSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGW 484
S+V V E+ D++ I G
Sbjct: 69 KSRVEPRTVEKY----------SNYRVVDSIEKADVV---VIVLDATQGITRQDQRMAGL 115
Query: 485 AQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWI 544
++R + E + ++ Y+ D +++
Sbjct: 116 MERRGRASVVVFNKWDLVVHRE----------KRYDEFTKLFREKLYFI---DYSPLIFT 162
Query: 545 QARTKE 550
A
Sbjct: 163 SADKGW 168
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 43.6 bits (101), Expect = 2e-05
Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 25/181 (13%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVP 429
+ G+ N GKSS +N + +K ++ + +F + + ++VP
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVP 78
Query: 430 KPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRS 489
+ ++ L + S L+ L+ I+HP D ++
Sbjct: 79 EEMKRKWQRALGEYLEKRQSLQ-------GLVVLMDIRHPLKDLDQQMIEWAVDSNIAVL 131
Query: 490 YMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTK 549
+ K + S +L + +E ++ + K
Sbjct: 132 VLLTKADKLASGARKAQLNMV------------------REAVLAFNGDVQVETFSSLKK 173
Query: 550 E 550
+
Sbjct: 174 Q 174
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 42.8 bits (100), Expect = 5e-05
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 373 VGQPNVGKSSLMNAIM-------GRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFP 425
G VGKSSL+NAI + R T Q + + D PG
Sbjct: 101 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANL 160
Query: 426 SKVPKPLQVLMGSFP 440
+ L F
Sbjct: 161 EINDIEPEELKHYFK 175
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 41.0 bits (95), Expect = 2e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSK 427
L G VG PNVGKS+ AI + + + P + TI + + +
Sbjct: 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYP-----YATIDPEEAKVAVPDERFDWLCE 65
Query: 428 VPKPLQVLMGSFPIA 442
KP + +
Sbjct: 66 AYKPKSRVPAFLTVF 80
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 37.4 bits (86), Expect = 0.002
Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 31/194 (15%)
Query: 317 LSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQP 376
++ + ++ + E+ + + K + + T+ GQ
Sbjct: 48 ITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTV-FAGQS 106
Query: 377 NVGKSSLMNAIMG---RKVVSVSRTPGHTKH---FQTIFLTDNIRLCDCPGLVFPSKVPK 430
VGKSSL+NAI + +S G KH + T + D PG
Sbjct: 107 GVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDI 166
Query: 431 PLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMD--ICDGWAQKR 488
+ L +FP ++ + LH+K P CA+ + DG ++
Sbjct: 167 EEEELGYTFPD---------IREKSSSCKFRGCLHLKEPK-----CAVKQAVEDGELKQY 212
Query: 489 SYMTAKTGRYDSYR 502
RYD Y
Sbjct: 213 --------RYDHYV 218
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 37.6 bits (87), Expect = 0.003
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKV 392
G VG PNVGKS+L NA+ +
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGI 27
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 37.2 bits (85), Expect = 0.004
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKV 392
+ IG VG+PNVGKS+ +A V
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDV 25
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 36.5 bits (83), Expect = 0.005
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 369 TIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN 413
+I G N GK+SL+ + V P +
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYD 44
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.4 bits (80), Expect = 0.007
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI 408
+ +G N GK++L++ + ++ ++ T T I
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI 41
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 35.1 bits (79), Expect = 0.009
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTI 408
+ I +G GK++++ + +VV+ T G T
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY 46
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 35.0 bits (79), Expect = 0.009
Identities = 15/115 (13%), Positives = 30/115 (26%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSK 427
L + +G N GK++++ G V ++S T G S
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSY 62
Query: 428 VPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICD 482
+ G + + E L+ + + D+
Sbjct: 63 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 35.0 bits (79), Expect = 0.014
Identities = 6/52 (11%), Positives = 15/52 (28%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPG 421
+ VG + GK+ L ++ + + + + L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDL 54
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 33.4 bits (75), Expect = 0.035
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 5/136 (3%)
Query: 364 KSGVLTIGCVGQPNVGKSSLMNAIM-GRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGL 422
KS + + +G VGKSSLMN + + + T G + + + +
Sbjct: 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62
Query: 423 V----FPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAM 478
F S + + + S + + I +K P+ +
Sbjct: 63 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122
Query: 479 DICDGWAQKRSYMTAK 494
+ D ++ S A+
Sbjct: 123 NKIDISERQVSTEEAQ 138
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.4 bits (73), Expect = 0.089
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVS-VSRTPGHTKHFQTIFLTD---NIRLCDCPG 421
+G VGK+ ++ S T G +TI L +++ D G
Sbjct: 12 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 32.0 bits (71), Expect = 0.11
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCP 420
+G P VGKS+L G + + GHT + + L
Sbjct: 7 LGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYD 54
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 32.1 bits (72), Expect = 0.11
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTP----GHTKHFQTIFLTDNIRLCDCPG 421
+G+ VGKSSL+ K + + D G
Sbjct: 13 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 32.1 bits (72), Expect = 0.15
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCD 418
I VG + GKSS++ I+GR + T+ + LT D
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDFLPRGSGIV-TRRPLILQLTHLPIADD 74
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 120
Score = 30.6 bits (69), Expect = 0.18
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 315 VDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELKKVDTNYEVHEK 362
VD SW E+ +D+E+E K+ + T+ + +YEV+ K
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRK 68
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 31.2 bits (69), Expect = 0.20
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPG 421
+ I VG GK++++ + ++V+ T + + + D G
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNVETVEYKNISFTVWDVGG 53
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.5 bits (70), Expect = 0.20
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ 406
+ I +G N GK++L+ + + ++ T G
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV 55
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.3 bits (70), Expect = 0.20
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN----IRLCDCPG 421
+G VGK+ L+ + +++ D G
Sbjct: 11 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 31.1 bits (69), Expect = 0.22
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCP 420
+ VG N GK++++ +VV S T + + + + D
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSPTI-GSNVEEIVINNTRFLMWDIG 67
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 31.0 bits (69), Expect = 0.22
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSR----TPGHTKHFQTIFLTDNIRLCDCPG 421
+G +VGK+S + K +++ D G
Sbjct: 11 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.1 bits (69), Expect = 0.25
Identities = 12/123 (9%), Positives = 30/123 (24%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPL 432
+G GKSSL++ + + +T + + + P
Sbjct: 11 LGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGW 70
Query: 433 QVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMT 492
+ + + V L ++ ++ I +
Sbjct: 71 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 130
Query: 493 AKT 495
A+
Sbjct: 131 ARA 133
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 31.0 bits (69), Expect = 0.35
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPL 432
VG + GKSS++ +GR + G + N L K
Sbjct: 32 VGGQSAGKSSVLENFVGRDFLPRG--SGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDF 89
Query: 433 QVLMGSFPIAQLRE 446
+ + R
Sbjct: 90 EEVRLEIEAETDRV 103
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 30.6 bits (68), Expect = 0.35
Identities = 20/165 (12%), Positives = 51/165 (30%), Gaps = 21/165 (12%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN----IRLCDCPGL-VFPSK 427
+G VGKS+L++ + S++ + D ++ D G +
Sbjct: 10 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 69
Query: 428 VPKPLQVLMGSFPIAQLREPYSTVQYLAERMDL-------IKLLHIKHPDDDEYWCAMDI 480
+ +G+ + + + + +L I ++ + + D + A+
Sbjct: 70 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT 129
Query: 481 CDGWAQKRSYMT------AKTGRYDS---YRAANELLRMATEGRI 516
+ A A E+ R+ ++ +I
Sbjct: 130 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 30.3 bits (67), Expect = 0.47
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD----NIRLCDCPG 421
+G GKS L++ + +K S + I +++ D G
Sbjct: 11 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.1 bits (67), Expect = 0.49
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 373 VGQPNVGKSSLMNAIMGRKVV-SVSRTPG---HTKHFQTIFLTDNIRLCDCPG 421
+G VGKS L+ + K S T G K +++ D G
Sbjct: 8 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 30.1 bits (66), Expect = 0.50
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQ 406
+ +G G + GK++L + S ++
Sbjct: 6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRG 44
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.0 bits (66), Expect = 0.52
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDC 419
+L + +G VGK+SLM+ + K + D ++
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 54
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 29.7 bits (65), Expect = 0.74
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKH 404
+ +G N GK++L++ + ++ T T
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE 50
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.83
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTD-----NIRLCDCPG 421
VG VGK+ L+ ++ + F+ L +++ D G
Sbjct: 12 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.3 bits (64), Expect = 0.86
Identities = 12/112 (10%), Positives = 28/112 (25%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPL 432
VG VGKSS++ + + ++ + + +
Sbjct: 8 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 67
Query: 433 QVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGW 484
A + +T + E + + + D + D
Sbjct: 68 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 119
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.2 bits (64), Expect = 0.90
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 4/55 (7%)
Query: 370 IGCVGQPNVGKSSLMNAI----MGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCP 420
+ GK++L+ + R + H D+ L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAG 59
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 0.92
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVV 393
+ + VG GK++ +N I +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFN 28
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.8 bits (66), Expect = 0.93
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 362 KYKSGVLTIGCVGQPNVGKSSLMNAI------MGRKVVSVSRTPGHTKHFQTIFLTDNIR 415
Y L +G G P GKS+ + A G KV ++ P L D R
Sbjct: 49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT-GGSILGDKTR 107
Query: 416 L 416
+
Sbjct: 108 M 108
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 29.3 bits (64), Expect = 1.0
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSR 397
+ +G + GK++L++ I G V S
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREA 35
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 29.5 bits (65), Expect = 1.3
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 362 KYKSGVLTIGCVGQPNVGKSSLMNAIM------GRKVVSVSRTPGHTKHFQTIFLTDNIR 415
+ +G G P VGKS+ ++A+ G KV ++ P + L D R
Sbjct: 46 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP-SSTRTGGSILGDKTR 104
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 29.2 bits (64), Expect = 1.3
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 370 IGCVGQPNVGKSSLMNAI-----MGRKVVSVSRTPGHTKHFQTI 408
+ VG GK++L KV V+ G +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEP 46
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.1 bits (64), Expect = 1.3
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 373 VGQPNVGKSSLMNAIMGRKVV-SVSRTPG---HTKHFQTIFLTDNIRLCDCPG 421
+G VGKS L+ T G K + T +++ D G
Sbjct: 12 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 28.9 bits (63), Expect = 1.4
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 373 VGQPNVGKSSLMNAIMGRK-VVSVSRTPGHTKHFQTIFLTDNIRLCDC 419
+G VGK+SLMN + +K T G + + + D +
Sbjct: 8 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 55
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 28.9 bits (64), Expect = 1.7
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 335 VEEEDEKVEVGETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRK-VV 393
+E + ++ ++ ++ + VG GKS LMN + G+K
Sbjct: 8 IENTNGRLMANPEAL--------KILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF 59
Query: 394 SVSRT 398
S+ T
Sbjct: 60 SLGST 64
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 28.3 bits (62), Expect = 1.8
Identities = 13/119 (10%), Positives = 25/119 (21%), Gaps = 8/119 (6%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPL 432
+G VGK++ + K K T+ + + K
Sbjct: 11 LGDSGVGKTTFLYRYTDNKFNP--------KFITTVGIDFREKRVVYNAQGPNGSSGKAF 62
Query: 433 QVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYM 491
+V + + A S L+ + A
Sbjct: 63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121
>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 359
Score = 28.7 bits (64), Expect = 1.8
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 459 DLIKLLHIKHPDDDEYWCAMDICDGW-----AQKRSYMTAKTGRYDSYRAANELLR---- 509
DL++L HIK ++ A + GW A K ++ +T + Y A E ++
Sbjct: 177 DLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKD 236
Query: 510 ------MATEGRICLCLMPPQYLSKQEYWE 533
+ E R+ + +L +E W+
Sbjct: 237 ELEIIHLIDEYRLVREHLLTIHLKSKEIWK 266
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 555 HPLVSVSDD---EAEGKNVKRKHKGEETEEDEGEEEESEEEEEESEEDN 600
+ + ++D E EGK V R +G + G +E E E E
Sbjct: 18 YKIREIADGLCLEVEGKMVSRT-EGNIDDSLIGGNASAEGPEGEGTEST 65
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.4 bits (62), Expect = 1.9
Identities = 15/122 (12%), Positives = 28/122 (22%), Gaps = 6/122 (4%)
Query: 370 IGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVP 429
I G+P VGK++L+ I+ R + + + R K
Sbjct: 3 IIITGEPGVGKTTLVKKIVER----LGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58
Query: 430 KPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRS 489
+ + + LA + K +D
Sbjct: 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRK--VIIIDEIGKMELFSK 116
Query: 490 YM 491
Sbjct: 117 KF 118
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.4 bits (62), Expect = 2.0
Identities = 11/148 (7%), Positives = 34/148 (22%), Gaps = 1/148 (0%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPL 432
VG VGK+ L+ + + ++ + L +
Sbjct: 15 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 74
Query: 433 QVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMT 492
+ + + + ++ + + D ++
Sbjct: 75 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLAR 134
Query: 493 AKTGRYDSYRAANELLRMATEGRICLCL 520
+ + ++A E C +
Sbjct: 135 LNDMKEK-PICVEQGQKLAKEIGACCYV 161
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.0 bits (61), Expect = 2.1
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 368 LTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG---HTKHFQTIFLT 411
L I +G GK++++ + +VV+ T G T ++ + L
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLN 64
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 168
Score = 28.2 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 553 YKHPLVSVSDD---EAEGKNVKRKHKGEETEEDEGEEEESEEEEEESEEDNITGV 604
Y V DD EA+ + V K G + D G +E+ EE +EE T
Sbjct: 18 YDLKEV---DDIVYEADCQMVTVKQGG---DVDIGANPSAEDAEENAEEGTETVN 66
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.2 bits (61), Expect = 2.2
Identities = 13/126 (10%), Positives = 28/126 (22%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPL 432
+G +VGKSSL + + V + I + +
Sbjct: 10 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 69
Query: 433 QVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMT 492
Q L ++++ + L + +R
Sbjct: 70 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 129
Query: 493 AKTGRY 498
+
Sbjct: 130 EEGKAL 135
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 28.3 bits (63), Expect = 2.3
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 14/53 (26%)
Query: 348 IELKKVDTNYEVHEKYKSGVL-----------TIGCVGQPNVGKSSLMNAIMG 389
I + + Y+ +L IG VG+ GKS+L I
Sbjct: 2 ITFRNIRFRYKPDSPV---ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 28.2 bits (61), Expect = 2.4
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCP 420
+G+ VGKS+L N G S + L +
Sbjct: 9 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 56
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.9 bits (61), Expect = 2.6
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDN 413
+G VGKS L++ +K ++ + I
Sbjct: 10 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 50
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 28.2 bits (61), Expect = 2.8
Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 8/197 (4%)
Query: 346 ETIELKKVDTNYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHF 405
E + +K ++ + ++K G+ I +GQ GKSSL++AI+ + F
Sbjct: 4 ERVTVKNFRSHSDTVVEFKEGINLI--IGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEF 61
Query: 406 QTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPYS------TVQYLAERMD 459
+ D ++ + S I ++ T
Sbjct: 62 TKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISA 121
Query: 460 LIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLC 519
++ L + + + D + + E +
Sbjct: 122 FMEKLIPYNIFLNAIYIRQGQIDAILESAREAALSKIGELASEIFAEFTEGKYSEVVVRA 181
Query: 520 LMPPQYLSKQEYWEKHP 536
L ++ P
Sbjct: 182 EENKVRLFVVWEGKERP 198
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.6 bits (60), Expect = 2.8
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIR----LCDCPGL-VFPSK 427
+G+ +VGK+SL+ M + + ++ L D G F S
Sbjct: 6 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 65
Query: 428 VPKPLQVLMGSFPIAQLREPYSTVQYLAERMDL---------IKLLHIKHPDDDEYWCAM 478
+P ++ + + + S Q D+ I L+ K D+ ++
Sbjct: 66 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI 125
Query: 479 DICDGWAQKRSYM----TAKTG 496
+ + A++ + M +AK G
Sbjct: 126 EEGERKAKELNVMFIETSAKAG 147
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.9 bits (62), Expect = 3.1
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 348 IELKKVDTNYEVHEKYKSGV-LTI------GCVGQPNVGKSSLMNAIMG 389
+ + VD Y+ E+ + G GKS++ + +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.0 bits (62), Expect = 3.3
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 318 SSWERKIAEEMHLEYEDVEEEDEKVEVGE-TIELKKVDTNYE-----VHEKYKSGVLTIG 371
+ WE E LE D K E + + ++ + G +
Sbjct: 10 AFWEEGFGE--LLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGE-MLA 66
Query: 372 CVGQPNVGKSSLMNAIMG 389
G GK+SL+ I+G
Sbjct: 67 ITGSTGSGKTSLLMLILG 84
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 28.0 bits (61), Expect = 3.4
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 476 CAMDICDGWAQKRSYMTAKTGRYDSYRAANELLRMATEGRICLCLMPPQYLSKQE-YWEK 534
+ ++ S + A E + R + L + + +
Sbjct: 195 YIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVV 254
Query: 535 HPDIDEILWIQARTKEEPYKHPLVSVSDDEAEGKNVKRKHKGEE-------TEEDEGEEE 587
D D I ++ E K + SD + G V + + ED+ E+
Sbjct: 255 AQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAEDKTEKL 314
Query: 588 ESEEEEE 594
+ E
Sbjct: 315 AAALEHH 321
>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 88
Score = 26.2 bits (58), Expect = 3.5
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 7 FSAKQKKAQLQAKKQKKSGA-SEDGRQEHHRPEHQLA--------PKMEGKNIIVQVSKK 57
F K K + + + ++ E G++ R A PKM+G+N+ + ++ K
Sbjct: 27 FLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVLAPK 86
Query: 58 K 58
Sbjct: 87 N 87
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 27.8 bits (62), Expect = 3.6
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 14/53 (26%)
Query: 348 IELKKVDTNYEVHEKYKSGVL-----------TIGCVGQPNVGKSSLMNAIMG 389
I++ V Y +E +L T+ VG GKS+L+N I
Sbjct: 17 IDIDHVSFQYNDNEAP---ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 4.2
Identities = 21/157 (13%), Positives = 42/157 (26%), Gaps = 15/157 (9%)
Query: 367 VLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPG-------HTKHFQTIFLTDNIRLCDC 419
++ I +G GKS+ + + R + T G + R
Sbjct: 2 LVKILLLGAGESGKSTFLKQM--RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERK 59
Query: 420 PGLVFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMD 479
V L ++ S L E T + +++ + + ++
Sbjct: 60 RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN 119
Query: 480 ICDGWAQK------RSYMTAKTGRYDSYRAANELLRM 510
D +K + Y G R + L
Sbjct: 120 KTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVE 156
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.5 bits (61), Expect = 4.3
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 348 IELKKVDTNYEVHEKYKSGVL-----------TIGCVGQPNVGKSSLMNAIMG 389
+E + V Y E L T+ VG+ GKS++ + I
Sbjct: 14 LEFRNVTFTYPGREVP---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 63
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.1 bits (59), Expect = 4.4
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 370 IGCVGQPNVGKSSLMNAIM------GRKVVSVSRTPGHTKHFQTIFLTDNIRL 416
VG + GK++LM + G +V +V + + D++R
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPE-GVDSVRH 55
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 4.9
Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 7/151 (4%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPG---HTKHFQTIFLTDNIRLCDCPGLVFPSKVP 429
VG GK+ L+ + V + + + L D GL ++
Sbjct: 8 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR 67
Query: 430 KPLQVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRS 489
+ + +++ + E+ +KH + +
Sbjct: 68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPE----VKHFCPNVPIILVGNKKDLRNDEH 123
Query: 490 YMTAKTGRYDSYRAANELLRMATEGRICLCL 520
E MA +
Sbjct: 124 TRRELAKMKQEPVKPEEGRDMANRIGAFGYM 154
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.9 bits (58), Expect = 4.9
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDC 419
VG VGKS+L + VS + + + D
Sbjct: 12 VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDI 58
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 178
Score = 26.9 bits (59), Expect = 5.0
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 338 EDEKVEVGETIELKKVDTNYEVH---EKYKSG 366
+++ V ++ + +H KY SG
Sbjct: 3 DEDFVTCYSVLKFINANDGSRLHSHDVKYGSG 34
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.9 bits (59), Expect = 5.9
Identities = 18/165 (10%), Positives = 42/165 (25%), Gaps = 28/165 (16%)
Query: 348 IELKKVDTNYEVHEKYKSGVL-----------TIGCVGQPNVGKSSLMNAIMGRKVVSVS 396
IE++ + K+K+ L +G GK+ + I G
Sbjct: 2 IEIESL------SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-----FH 50
Query: 397 RTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPLQVLMGSFPIAQLREPYSTVQYLAE 456
+TD V+ + L + + E ++ + +
Sbjct: 51 VPDSGRILLDGKDVTDLSPEKHDIAFVYQN------YSLFPHMNVKKNLEFGMRMKKIKD 104
Query: 457 RMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMTAKTGRYDSY 501
++ + + + G Q+ + A
Sbjct: 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149
>d1yq2a4 b.30.5.1 (A:722-1023) beta-Galactosidase, domain 5
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 302
Score = 27.3 bits (60), Expect = 6.0
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 294 KMAAEGAKKLLEACQTIVQGAVDLSSWERKIAEEMHLEYEDVEEEDEKVEVGETIELKKV 353
A G V + W++ + + EDV + + V
Sbjct: 55 GFGAYGPGDPWLNSGRGVPAPSSEAVWKQAGLDRLTRRVEDVAALPDGIRVRTRYAAADS 114
Query: 354 DTNYEVHEKYK--SGVLTIGCVGQPNVGKSSLMNAIMGR 390
+ V E ++ G L + P+ G + + I R
Sbjct: 115 THSVAVEENWQLDGGELCLRIDITPSAGWNLVWPRIGVR 153
>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase
{Acetobacter pasteurianus [TaxId: 438]}
Length = 385
Score = 27.4 bits (59), Expect = 6.1
Identities = 6/60 (10%), Positives = 15/60 (25%)
Query: 132 YFLPELDFPKRPEWNFNMSIDQLDRREQDYFRDYLSNIESKFAWKDLSYFELNLETWRQL 191
E+ + + + +F +YL + D + + W
Sbjct: 323 GVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYNTGDQKWDYY 382
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Length = 74
Score = 25.1 bits (55), Expect = 6.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 288 RRRGKMKMAAEGAKK 302
RRRGK K+AA ++
Sbjct: 51 RRRGKNKVAARTCRQ 65
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.5 bits (57), Expect = 6.2
Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 17/141 (12%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTP-GHTKHFQTIFLTDNIRLCDCPG---LVFPSKV 428
VG VGKS+L ++ V + Q + + L + +
Sbjct: 9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 429 PKPLQVLMGSFPIAQLREPYS---------TVQYLAERMDLIKLLHIKHPDDDEYWCAMD 479
+ ++ G + + S ++ + + D+ +L D
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESR 128
Query: 480 ICDGWAQKRSYM----TAKTG 496
A+ +AKT
Sbjct: 129 QAQDLARSYGIPYIETSAKTR 149
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.4 bits (57), Expect = 7.0
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIF 409
+G VGKS L+ ++ V + +
Sbjct: 9 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV 45
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 26.7 bits (58), Expect = 7.0
Identities = 17/160 (10%), Positives = 41/160 (25%), Gaps = 28/160 (17%)
Query: 450 TVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQK--RSYMTAKTGRYDSYRAANEL 507
+V ++ + + + IC ++ Y G
Sbjct: 75 SVAAASKILSNLVYQYKGAG----LSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIF--- 127
Query: 508 LRMATEGRICLCLMPPQYLSKQEYWEKHPDIDEILWIQARTKEEPYKHPLVSVSDDEAEG 567
G ++ +++ L++ R+ + D G
Sbjct: 128 ----CVGSGQTFAYGV----LDSNYKWDLSVEDALYLGKRSILA-------AAHRDAYSG 172
Query: 568 KNVK----RKHKGEETEEDEGEEEESEEEEEESEEDNITG 603
+V + + E + +EEE +N+ G
Sbjct: 173 GSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFNNVIG 212
>gi|218296413|ref|ZP_03497156.1|(69-154:157) translation
initiation factor IF-3 [Thermus aquaticus Y51MC23]
gi|218243207|gb|EED09738.1| translation initiation
factor IF-3 [Thermus aquaticus Y51MC23] E=2e-35
s/c=1.74 id=82% cov=101%
Length = 86
Score = 25.5 bits (56), Expect = 7.3
Identities = 3/16 (18%), Positives = 11/16 (68%)
Query: 43 PKMEGKNIIVQVSKKK 58
P++ G+++ + ++ K
Sbjct: 71 PELLGRDMNMLLAPAK 86
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 7.5
Identities = 12/126 (9%), Positives = 34/126 (26%), Gaps = 1/126 (0%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDCPGLVFPSKVPKPL 432
G+ VGKS+L+ + ++ + + + + D + + +
Sbjct: 8 FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQRE 67
Query: 433 QVLMGSFPIAQLREPYSTVQYLAERMDLIKLLHIKHPDDDEYWCAMDICDGWAQKRSYMT 492
+ + + E + L +L + + R T
Sbjct: 68 GHMRWGEGFVLVYDITDR-GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 126
Query: 493 AKTGRY 498
+ +
Sbjct: 127 EEGEKL 132
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 7.9
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 361 EKYKSGVLTIGCVGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDC 419
EKY+ + VG VGKS+L + V+ + + + D D
Sbjct: 4 EKYR-----LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDI 57
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.8 bits (59), Expect = 8.3
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 13/53 (24%)
Query: 348 IELKKVDTNYEVHEKYKSGVL-----------TIGCVGQPNVGKSSLMNAIMG 389
++ + V Y VL VG GKS++ +
Sbjct: 12 VQFQDVSFAYPNRPDVL--VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 8.4
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 373 VGQPNVGKSSLMNAIMGRKVVSVSRTPGHTKHFQTIFLTDNIRLCDC 419
G VGKSSL+ + + Q I +I
Sbjct: 8 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQI 54
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.5 bits (57), Expect = 9.7
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 356 NYEVHEKYKSGVLTIGCVGQPNVGKSSLMNAIMGR 390
+YE ++ + L+ + +VG+S ++N +
Sbjct: 164 SYESLDEEQDRDLSY--IKIMDVGQSYVVNRVADH 196
>d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 79
Score = 24.7 bits (54), Expect = 9.9
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 337 EEDEKVEVGETIELKKVDTNYEV--------HEKYKSGVLTIGCVGQPNVGKSSLMNAIM 388
+ +V G T+ + +D++ E +K ++++ + + ++
Sbjct: 2 PNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSP----IAR-----GLI 52
Query: 389 GRKV---VSVSRTPGHTKHFQ 406
G++ V + +TPG F+
Sbjct: 53 GKEEDDVVVI-KTPGGEVEFE 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.396
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,321,102
Number of extensions: 114170
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 122
Length of query: 604
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 513
Effective length of database: 1,158,166
Effective search space: 594139158
Effective search space used: 594139158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.3 bits)