BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy359
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 95/210 (45%), Gaps = 48/210 (22%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFE 245
E+ + C C KSF R HL H RTHTGEKPY C C K F+ D
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD-------------- 64
Query: 246 SVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVVHMG 305
LTR+ H + +KC CG S + L+ H R
Sbjct: 65 --------LTRHQRTHTGEK-------------PYKCPECGKSFSQRANLRAHQRT---- 99
Query: 306 LSRKYHYEYKPDGVCDVCGEYKKQLLQ---HKRLHFPLRPYACTQCDKTFKKKNHLTTHY 362
H KP C CG+ QL H+R H +PY C +C K+F ++++L TH
Sbjct: 100 -----HTGEKPY-ACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
R HTGEKPY+C CG+ F++ + + H+RT
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 100/261 (38%), Gaps = 80/261 (30%)
Query: 111 SNTPTSAANVENKTLPLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDK 170
S++ + A +E P Y C +C +++ L H+R H G K +C C K
Sbjct: 6 SSSSVAQAALEPGEKP--YACPECGKSFSRSDHLAEHQRTHTG------EKPYKCPECGK 57
Query: 171 VVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQ 228
++ H H E+ + C C KSF ++ +L+ H RTHTGEKPYAC C K F+Q
Sbjct: 58 SFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ 117
Query: 229 ISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKCDLCGNI 288
++ HL+ AH E+ +KC CG
Sbjct: 118 LA----HLR---------------------------AHQRTHTGEK----PYKCPECGKS 142
Query: 289 LSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQC 348
S + L H R H KP Y C +C
Sbjct: 143 FSREDNLHTHQRT---------HTGEKP--------------------------YKCPEC 167
Query: 349 DKTFKKKNHLTTHYRIHTGEK 369
K+F +++ L H R HTG+K
Sbjct: 168 GKSFSRRDALNVHQRTHTGKK 188
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 364 IHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ GEKPY C CG+ F++S+ + +H+RT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRT 43
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD +L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA+S++ K+H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 166 ELCDKVVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E CD+ + A H +H ++ F C C ++F R HL H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 224 KRFAQISDRIKHLK 237
++FA+ +R +H K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F R L H R HTG+KP+ C +C + F++ H+++
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT--NLAAHHNEVH 183
P P + CDR + L H R H G K +C +C + + + H H
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ F C C + F R K HT+ H +K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD +L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA+S++ K+H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 166 ELCDKVVT--NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E CD+ + + H +H ++ F C C ++F R HL H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 224 KRFAQISDRIKHLK 237
++FA+ +R +H K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F R L H R HTG+KP+ C +C + F++ H+++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT--NLAAHHNEVH 183
P P + CDR + L H R H G K +C +C + + + H H
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ F C C + F R K HT+ H +K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 285 CGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLLQHKRLHFPLR 341
C S L H+R+ H KP C +C L H R H +
Sbjct: 12 CDRRFSRSDELTRHIRI---------HTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEK 369
P+AC C + F + + H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD +L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA+S++ K+H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 166 ELCDKVVT--NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E CD+ + + H +H ++ F C C ++F R HL H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 224 KRFAQISDRIKHLK 237
++FA+ +R +H K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 341 RPYAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
RPYAC CD+ F + + LT H RIHTG+KP+QC IC R F++S+ + H RT
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 185 HERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
HER + C C++ F R L H R HTG+KP+ C +C + F++ H+++
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT--NLAAHHNEVH 183
P P + CDR + L H R H G K +C +C + + + H H
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTH 211
E+ F C C + F R K HT+ H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD +L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDI
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 376 CGRGFAQSNDMKKH 389
CGR FA+S++ K+H
Sbjct: 67 CGRKFARSDERKRH 80
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 166 ELCDKVVT--NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E CD+ + + H +H ++ F C C ++F R HL H RTHTGEKP+AC +C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 224 KRFAQISDRIKHLK 237
++FA+ +R +H K
Sbjct: 69 RKFARSDERKRHTK 82
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F R L H R HTG+KP+ C +C + F++ H+++
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 55
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT--NLAAHHNEVH 183
P P + CDR + L H R H G K +C +C + + + H H
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTH 56
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTH 211
E+ F C C + F R K HT+ H
Sbjct: 57 TGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA+S++ K+H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 166 ELCDKVVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E CD+ + A H +H ++ F C C ++F R HL H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 224 KRFAQISDRIKHLK 237
++FA+ +R +H K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F R L H R HTG+KP+ C +C + F++ H+++
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT--NLAAHHNEVH 183
P P + CDR + L H R H G K +C +C + + + H H
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ F C C + F R K HT+ H +K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 275 ERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLL 331
ER + C S L H+R+ H KP C +C L
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRI---------HTGQKP-FQCRICMRNFSRSDHLT 51
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
H R H +P+AC C + F + + H +IH +K
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA+S++ K+H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 166 ELCDKVVTNLAA--HHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E CD+ + + H +H ++ F C C ++F R HL H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 224 KRFAQISDRIKHLK 237
++FA+ +R +H K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT--NLAAHHNEVH 183
P P + CDR + SL H R H G K +C +C + + + H H
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ F C C + F R K HT+ H +K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F + L H R HTG+KP+ C +C + F++ H+++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 275 ERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLL 331
ER + C S L H+R+ H KP C +C L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI---------HTGQKP-FQCRICMRNFSRSDHLT 51
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
H R H +P+AC C + F + + H +IH +K
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA+S++ K+H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 166 ELCDKVVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E CD+ ++ + H +H ++ F C C ++F R HL H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 224 KRFAQISDRIKHLK 237
++FA+ +R +H K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT--NLAAHHNEVH 183
P P + CDR + +L H R H G K +C +C + + + H H
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ F C C + F R K HT+ H +K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F +L H R HTG+KP+ C +C + F++ H+++
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 275 ERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLL 331
ER + C S L H+R+ H KP C +C L
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRI---------HTGQKP-FQCRICMRNFSRSDHLT 51
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
H R H +P+AC C + F + + H +IH +K
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQIH 399
++P+ C C + F + +HLTTH R HTGEKP+ CDICGR FA+S++ K+HR H I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI- 59
Query: 400 AVEDK 404
+EDK
Sbjct: 60 -LEDK 63
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
F C C ++F R HL H RTHTGEKP+AC +C ++FA+ +R +H H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 127 LTYPCDQCDRTYQTKKSLYVH-RRAHLGIVYRYKSKTDRCELCDKVVTNLAA-----HHN 180
L+ P CDRT+ T L H H+G + + E C + + A +H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-NNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 181 EVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHL 236
VH E+ FPC F C K F R +LK+H RTHTGEKP+ C CD+RFA SDR KH+
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 268 EAIKTERERKLIFKCDL------CGNILSSKHILQEHVRVVHMGLSRKY----HYEYKPD 317
+ IK E K I + L C S+ H L HV + H+G + ++E P
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 318 GVCDVCGEYKKQLLQHKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
+YK L+ H R+H +P+ C C K F + +L H R HTGEKP++C+
Sbjct: 68 EGKSFKAKYK--LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Query: 376 --CGRGFAQSNDMKKH 389
C R FA S+D KKH
Sbjct: 126 EGCDRRFANSSDRKKH 141
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 345 CTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDMKKHRRT 392
C + K+FK K L H R+HTGEKP+ C CG+ FA+S ++K H+RT
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCEL--CDKVVTNLAAHHNEVH 183
P P C + + ++L +H+R H G K +CE CD+ N + +H
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTG------EKPFKCEFEGCDRRFANSSDRKKHMH 143
Query: 184 AH 185
H
Sbjct: 144 VH 145
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 320 CDVCGEYKKQ---LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
C CG+ Q L +H+R H +PY C +C K+F + + L H R HTGEKPY+C C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 377 GRGFAQSNDMKKHRRT 392
G+ F++S+ + +H+RT
Sbjct: 67 GKSFSRSDHLSRHQRT 82
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+PY C +C K+F + ++L H R HTGEKPY+C CG+ F+QS+D++KH+RT
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
E+ + C C KSF + +L+ H RTHTGEKPY C C K F+Q SD KH ++
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 164 RCELCDKVVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL 221
+C C K + + H H E+ + C C KSF + L+ H RTHTGEKPY C
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 222 CDKRFAQISDRIKHLKSSHN 241
C K F++ +H ++ N
Sbjct: 66 CGKSFSRSDHLSRHQRTHQN 85
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQ---LLQHKRL 336
+KC CG S LQ+H R H G YK C CG+ Q L +H+R
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRT-HTGEK-----PYK----CPECGKSFSQSSDLQKHQRT 54
Query: 337 HFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
H +PY C +C K+F + +HL+ H R H +K
Sbjct: 55 HTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLA--AHHNEVHAHE 186
Y C +C +++ +L H+R H G K +C C K + + H H E
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTG------EKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
+ + C C KSF R HL H RTH +K
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKPY+C CG+ F+QS++++KH+RT
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRT 26
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 323 CGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRG 379
CG+ +K Q +H +H LRPY C C K FK K+HL H +IHTG KPY+C+IC +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 380 FAQSNDMKKH 389
F + +H
Sbjct: 75 FMWRDSFHRH 84
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
H +H R + C C K FK K HL H + HTG KPY C +C KRF +H+ S
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
Y C QC K+F K+ H +H G +PY C +CG+ F + + H +
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 285 CGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLLQHKRLHFPLR 341
CG + K H+ + H+GL +P G C VCG+ K L+ H ++H ++
Sbjct: 15 CGKSFTHKSQRDRHMSM-HLGL--------RPYG-CGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 342 PYACTQCDKTFKKKNHLTTH 361
PY C C K F ++ H
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 315 KPDGVCDVCGEY---KKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
K + +C CG + LL H+R H RPY C C K F++++HL H IH+ EKP+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 372 QCDICGRGFAQSNDMKKHRRTVH 394
+C CG+GF QS + H +T+H
Sbjct: 75 KCQECGKGFCQSRTLAVH-KTLH 96
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 157 RYKSKTDR---CELCDKVVT---NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRT 210
R SKT + C+ C + T NL H H ER + C C K+F+R+ HL+ H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 211 HTGEKPYACYLCDKRFAQ 228
H+ EKP+ C C K F Q
Sbjct: 68 HSKEKPFKCQECGKGFCQ 85
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVV--TNLAAHHNEVHAHE 186
+ C C R + +L +H R H + C++C K + H +H+ E
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTD------ERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTH 211
+ F C C K F + L VH H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 320 CDVCGEYKKQ---LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
C +CG+ K+ L H +H RPY C C K F +K+ + H IHTGEKP++C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 377 GRGFAQSNDMKKHRR 391
G+ F+QS+++ H R
Sbjct: 64 GKAFSQSSNLITHSR 78
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 165 CELCDKVV--TNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLC 222
C++C K ++ + H +H+ R +PC +C K F +K +K HT HTGEKP+ C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 223 DKRFAQISDRIKH 235
K F+Q S+ I H
Sbjct: 64 GKAFSQSSNLITH 76
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKH 389
+ C C K+FK+ + L+TH IH+ +PY C CG+ F Q +DMKKH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
F C C KSFKR L H H+ +PY C C KRF Q SD KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLLQHKRL 336
F C +CG L H+ + H + +P C CG+ K + +H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI---------HSDTRPY-PCQYCGKRFHQKSDMKKHTFI 51
Query: 337 HFPLRPYACTQCDKTFKKKNHLTTHYRIHTG 367
H +P+ C C K F + ++L TH R HTG
Sbjct: 52 HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 128 TYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLA--AHHNEVHAH 185
++ C C ++++ +L H ++ ++ C+ C K + H +H
Sbjct: 1 SFDCKICGKSFKRSSTLSTH------LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTG 213
E+ C C K+F + +L H+R HTG
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 340 LRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+RPYAC CD+ F + + LT H RIHTG+KP+QC IC R F++S+ + H RT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 190 PCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
P C++ F R L H R HTG+KP+ C +C + F++ H+++
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHT 366
P CD +L +H R+H +P+ C C + F + +HLTTH R HT
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 166 ELCDKVVT--NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHT 212
E CD+ + + H +H ++ F C C ++F R HL H RTHT
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 131 CDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVV---TNLAAHH--NEVHAH 185
C C + + +K L VH R H G K C C K NL H N ++
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTG------EKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHN 241
E+ F C+ C+++F+R++ L++H +HTGE PY C C ++F Q D H+ H+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 320 CDVCGEYKKQLLQHKR---LHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
C C K+ LL+H+ ++ + + C+ C +TF+++ L H HTGE PY+C C
Sbjct: 41 CGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Query: 377 GRGFAQSNDMKKHRRTVHKA 396
+ F Q D++ H +H
Sbjct: 101 SQQFMQKKDLQSHMIKLHSG 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 191 CTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH-----LKSSHNFDFE 245
C C K F K +LKVH R HTGEKP+ C C K + + + ++H + S
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 246 SVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVVHMG 305
SV +T R + LH ++ +KC C K LQ H+ +H G
Sbjct: 70 SVCQET--FRRRMELRLH-------MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Query: 306 LS 307
S
Sbjct: 121 PS 122
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
+PY C +C K F + + L H R+HTGEKPY+C CG+ F+Q++ + H+R
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
E+ + C C K+F R L H R HTGEKPY C C K F+Q S I H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 315 KPDGVCDVCGEYKKQ---LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHT 366
KP G C CG+ + L+QH+R+H +PY C +C K F + + L H RIHT
Sbjct: 13 KPYG-CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 165 CELCDKVVT--NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHT 212
C C K + ++ H VH E+ + C C K+F + L H R HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD K L H R+H +P+ C C + F ++ L H R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA + +H
Sbjct: 68 CGRKFATLHTRTRH 81
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 166 ELCDKVV---TNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLC 222
E CD+ TNL H +H ++ F C C ++F ++ L H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Query: 223 DKRFAQISDRIKHLK 237
++FA + R +H K
Sbjct: 69 GRKFATLHTRTRHTK 83
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F +K +L H R HTG+KP+ C +C + F+Q + H+++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT 56
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 275 ERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQ---LL 331
ER + C S K L H+R+ H KP C +C Q L
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI---------HTGQKP-FQCRICMRNFSQQASLN 51
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
H R H +P+AC C + F + T H +IH +K
Sbjct: 52 AHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%)
Query: 316 PDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI 375
P CD K L H R+H +P+ C C + F + L H R HTGEKP+ CDI
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 376 CGRGFAQSNDMKKH 389
CGR FA + +H
Sbjct: 68 CGRKFATLHTRDRH 81
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 166 ELCDKVV---TNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLC 222
E CD+ TNL H +H ++ F C C ++F + L H RTHTGEKP+AC +C
Sbjct: 10 ESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Query: 223 DKRFAQISDRIKHLK 237
++FA + R +H K
Sbjct: 69 GRKFATLHTRDRHTK 83
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
ER + C C++ F +K +L H R HTG+KP+ C +C + F+Q + +H+++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT 56
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 275 ERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQ---LL 331
ER + C S K L H+R+ H KP C +C Q L
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI---------HTGQKP-FQCRICMRNFSQHTGLN 51
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
QH R H +P+AC C + F + H +IH +K
Sbjct: 52 QHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 330 LLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMK 387
L H R H +PY CT CD F + + LT HYR HTG KP+QC +C R F++S+ +
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 388 KH 389
H
Sbjct: 93 LH 94
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 194 CEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLK 237
C K + + HLK H RTHTGEKPY C CD RFA+ + +H +
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 168 CDKVVT---NLAAHHNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLC 222
C KV T +L AH H E+ + CT+ C+ F R L H R HTG KP+ C +C
Sbjct: 23 CTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 223 DKRFAQISDRIKHLKSSHN 241
++ F++ H+K N
Sbjct: 82 NRSFSRSDHLALHMKRHQN 100
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 275 ERKLIFKCDL--CGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQLLQ 332
E++ I CD C + + L+ H+R H G + Y+ +G CD +L +
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTG---EKPYKCTWEG-CDWRFARSDELTR 65
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIH 365
H R H +P+ C C+++F + +HL H + H
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 121 ENKTLPLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCEL--CDKVVT--NLA 176
E + YP C++ Y L +H R H G K +C+ C++ + +
Sbjct: 3 EKRPFMCAYP--GCNKRYFKLSHLQMHSRKHTG------EKPYQCDFKDCERRFSRSDQL 54
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIK 234
H H + F C C++ F R HLK HTRTHTGEKP++C C K+FA+ + ++
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Query: 235 H 235
H
Sbjct: 115 H 115
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 329 QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDM 386
QL +H+R H ++P+ C C + F + +HL TH R HTGEKP+ C C + FA+S+++
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Query: 387 KKH 389
+H
Sbjct: 113 VRH 115
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 341 RPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDMKKHRR 391
RP+ C C+K + K +HL H R HTGEKPYQCD C R F++S+ +K+H+R
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 330 LLQHKRLHFPLRPYAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMK 387
L H R H +PY C C++ F + + L H R HTG KP+QC C R F++S+ +K
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 388 KHRRT 392
H RT
Sbjct: 84 THTRT 88
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 320 CDVCGEYKK---QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGE--KPYQCD 374
C++CG+ + L +HK H +PY+C C FK+K+ ++ H R H G KPY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 375 ICGRGFAQSNDMKKHRRTVH 394
CG+GF++ + + H + VH
Sbjct: 70 SCGKGFSRPDHLNGHIKQVH 89
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 165 CELCDKVVTNL--AAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGE--KPYACY 220
CE+C K+ ++ H H+ E+ + C C FKRK + H R+H G KPY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 221 LCDKRFAQISDRIKHLKSSHN 241
C K F++ H+K H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 344 ACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
AC C K F+ HL H H+GEKPY C +CG F + + M H R+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
+PY C +C +F+ K +L +H +HTGEKPY+C+ICG F + ++K H R +H +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGE 71
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 161 KTDRCELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
K DRC+ + NLA+H VH E+ + C C F R +LK HTR H+GEKP
Sbjct: 19 KCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 320 CDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
C YK L HK +H +PY C C F + +L TH RIH+GEKP
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
++ + C C+ SF+ K +L H HTGEKPY C +C +F + ++ H +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 319 VCDVCGEY---KKQLLQHKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQC 373
VC CG+ +L +H+ +H +P+ CT C K F +L TH RIHTG++PY C
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 374 --DICGRGFAQSNDMKKHRRTVHKAQ 397
D C + FAQS ++K H T KA+
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 165 CELCDK--VVTNLAAHHNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACY 220
C C K V ++ H VH E+ F CTF C K F +L+ H R HTG++PY C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 221 L--CDKRFAQISDRIKHL 236
C+K+FAQ ++ H+
Sbjct: 97 FDGCNKKFAQSTNLKSHI 114
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDMK 387
+ +H H P R + C +C K F + + L H +HTGEKP+QC CG+ F+ +++
Sbjct: 23 MRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 388 KHRR 391
H R
Sbjct: 82 THVR 85
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 126 PLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRC--ELCDKVVT---NLAAHHN 180
P + C +C + + L H+ H G K +C E C K + NL H
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTG------EKPFQCTFEGCGKRFSLDFNLRTH-V 84
Query: 181 EVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEK 215
+H +R + C F C K F + +LK H TH K
Sbjct: 85 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
R Y C +C K+F + L+ H R HTGEKPY+CD CG+ F Q + + H R
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
CD CG+ + L +H+R H +PY C +C K F +++HL H+R+HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 27/49 (55%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
R++ C C KSF L H RTHTGEKPY C C K F Q S I H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 164 RCELCDKVVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
+C+ C K ++ + + H H E+ + C C K+F ++ HL H R HTG P
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQI 398
+ C C + F ++ HL HYR HT EKPY C +C R F + + + +H + +H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDF 244
F C C ++F R+ HLK H R+HT EKPY C LC++ F + I+H + H+ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 319 VCDVCGEY---KKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHY-RIHTG 367
VC+VC ++ L +H R H +PY C C++ F +++ L H +IH+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
C+VCG+ K +L H R H ++PY C CD + L H RIH+ E+P++C IC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 377 GRGFAQSNDMKKHRRT 392
S+ + H R+
Sbjct: 71 PYASRNSSQLTVHLRS 86
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
P+ C C K F +K+ L TH R HTG KPY+C C A S+ + KH R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 131 CDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAA--HHNEVHAHERK 188
C+ C + + K L H R H G+ K +C+ CD + ++ H +H+ ER
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGV------KPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGE 214
F C C + + L VH R+HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 191 CTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLK-SSHNFDFES--- 246
C C K F RK LK H R HTG KPY C CD A S KHL+ S F+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 247 --VKNKTTPLTRYLNKHLHDAHPEA 269
++ LT +L H D+ P +
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 281 KCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQLLQHKRLHFPL 340
KC++CG S K L+ H+R H G+ Y+ K CD L +H R+H
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HTGVKP---YKCK---TCDYAAADSSSLNKHLRIHSDE 62
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
RP+ C C + + LT H R HTG+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 164 RCELCDKVVT--NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL 221
+CE+C K + + H H + + C C+ + L H R H+ E+P+ C +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 222 CDKRFAQISDRIKHLKS 238
C S HL+S
Sbjct: 70 CPYASRNSSQLTVHLRS 86
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIK 234
H H E+ CTF C KS+ R +LK H R+HTGEKPY C C K F+ SDR K
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 235 HLKSSHN 241
H +H+
Sbjct: 118 HQNRTHS 124
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 281 KCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCG------EYKKQ--LLQ 332
+ D C S+ L H+ H+ RK + VC G +K Q L+
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERK-------EFVCHWGGCSRELRPFKAQYMLVV 57
Query: 333 HKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQC--DICGRGFAQSNDMKK 388
H R H +P+ CT C K++ + +L TH R HTGEKPY C + C + F+ ++D K
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 389 HRRTVH 394
H+ H
Sbjct: 118 HQNRTH 123
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 169 DKVVTNLAAHHNEVHAHERKFPCTF--CEKS---FKRKLHLKVHTRTHTGEKPYACYL-- 221
+++V ++ + H +H ++F C + C + FK + L VH R HTGEKP+ C
Sbjct: 17 EQLVHHINSEH--IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG 74
Query: 222 CDKRFAQISDRIKHLKS 238
C K ++++ + HL+S
Sbjct: 75 CRKSYSRLENLKTHLRS 91
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Query: 262 LHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCD 321
+H + E I ER+ F C G + +++ VVHM + H KP C
Sbjct: 20 VHHINSEHIHGERKE---FVCHWGGCSRELRPFKAQYMLVVHM----RRHTGEKPH-KCT 71
Query: 322 VCGEYK-----KQLLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTHY-RIHTGEKPYQC 373
G K + L H R H +PY C C K F + H R H+ EKPY C
Sbjct: 72 FEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Query: 374 DI--CGRGFAQSNDMKKHRRTVH 394
+ C + + + ++KH +TVH
Sbjct: 132 KLPGCTKRYTDPSSLRKHVKTVH 154
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 41/117 (35%)
Query: 132 DQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRC--ELCDKVVTNL---AAHHNEVHAHE 186
+ C ++Y ++L H R+H G K C E C K +N A H N
Sbjct: 73 EGCRKSYSRLENLKTHLRSHTG------EKPYMCEHEGCSKAFSNASDRAKHQN------ 120
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLKSSHN 241
RTH+ EKPY C L C KR+ S KH+K+ H
Sbjct: 121 ----------------------RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 340 LRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDMKKHRRT 392
+R + C+ C KT+ K +HL H R HTGEKP+ C C R FA+S+++ +HRRT
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 194 CEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLKS 238
C K++ + HLK HTRTHTGEKP++C C++RFA+ + +H ++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTH 211
H H E+ F C++ CE+ F R L H RTH
Sbjct: 38 HTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 165 CELCDK---VVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL 221
C +C + +T+L H N +H+ E+K+PC +CEK F + H HTGE+ Y C
Sbjct: 25 CIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 222 CDKRFAQISDRIKHLKSSHNFD 243
C K F H+KS H+ D
Sbjct: 84 CGKSFINYQFMSSHIKSVHSQD 105
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 311 HYEYKPDG----VCDVCGEYK---KQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYR 363
HYE DG +C VC L +H +H + Y C C+K F + T H
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 364 IHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
HTGE+ YQC CG+ F M H ++VH
Sbjct: 72 HHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 35/115 (30%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVK 248
+ C C++S+ L+ H H+ EK Y C C+K F
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF---------------------- 60
Query: 249 NKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVVH 303
PL Y KH I ER+ ++C CG + + H++ VH
Sbjct: 61 ----PLAEYRTKH-------EIHHTGERR--YQCLACGKSFINYQFMSSHIKSVH 102
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 127 LTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKV--VTNLAAHHNEVHA 184
+ Y C C R+Y SL H H K C C+KV + H H
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSW------EKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 185 HERKFPCTFCEKSFKR----KLHLK-VHTRTHTGE-KPYACYLCD----KRFAQISDR 232
ER++ C C KSF H+K VH++ +G+ K Y + C +++A +SDR
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAYLSDR 132
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 319 VCDVCGEYK-----KQLLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPY 371
CD G K L H R H +PY C C F + + LT HYR HTG +P+
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 372 QCDICGRGFAQSNDMKKH 389
QC C R F++S+ + H
Sbjct: 68 QCQKCDRAFSRSDHLALH 85
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 194 CEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLK 237
C K++ + HLK H RTHTGEKPY C C +FA+ + +H +
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 275 ERKLIFKCDL--CGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCG---EYKKQ 329
R CD CG + L+ H+R H G + YH ++ D CG +
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTG-EKPYHCDW------DGCGWKFARSDE 53
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIH 365
L +H R H RP+ C +CD+ F + +HL H + H
Sbjct: 54 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHL 236
H H E+ + C + C F R L H R HTG +P+ C CD+ F++ H+
Sbjct: 27 HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 86
Query: 237 K 237
K
Sbjct: 87 K 87
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 128 TYPCD--QCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAH 185
T+ CD C +TY L H R H G Y D C L H+ + H
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEK-PYHCDWDGCGWKFARSDELTRHYRK-HTG 63
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTH 211
R F C C+++F R HL +H + H
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 319 VCDVCGEYK-----KQLLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPY 371
CD G K L H R H +PY C C F + + LT HYR HTG +P+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 372 QCDICGRGFAQSNDMKKH 389
QC C R F++S+ + H
Sbjct: 67 QCQKCDRAFSRSDHLALH 84
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 194 CEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLK 237
C K++ + HLK H RTHTGEKPY C C +FA+ + +H +
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 275 ERKLIFKCDL--CGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCG---EYKKQ 329
+R CD CG + L+ H+R H G + YH ++ D CG +
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTG-EKPYHCDW------DGCGWKFARSDE 52
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIH 365
L +H R H RP+ C +CD+ F + +HL H + H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHL 236
H H E+ + C + C F R L H R HTG +P+ C CD+ F++ H+
Sbjct: 26 HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Query: 237 K 237
K
Sbjct: 86 K 86
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 128 TYPCD--QCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAH 185
T+ CD C +TY L H R H G Y D C L H+ + H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEK-PYHCDWDGCGWKFARSDELTRHYRK-HTG 62
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTH 211
R F C C+++F R HL +H + H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 191 CTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
C++C K F+ +L +H RTHTGEKPY C C+ AQ + HL+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 345 CTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHK 395
C+ C K F+ +L H R HTGEKPY+C+ C AQ ++ H HK
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + +HLT H+RIHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K F + HL H R HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C+ CG+ F Q++ + H R +H +
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWR-IHTGE 38
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K+F +K+HL H RIHTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C C KSF +K HL H R HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY C+ CG+ F Q + + +HRR
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRR 33
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F +K +LT H RIHTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F +K +L H R HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY+C CG+ FAQ ++ +H+R
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQR 33
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
++PY C++C K F+ K++L H R HTGEKP
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
+ + C+ C K+F+ K +L +H RTHTGEKP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + +++K L +H R H G
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTG 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C KTF +K+ L+ H R HTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C C K+F +K L H RTHTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSG 42
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKPY C+ CG+ F+Q + + H+RT
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRT 34
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C +T+ K L H+R H G
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTG 37
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K F++ HL +H RIHTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C K+F++ +HL H R HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 179 HNEVHAHERKFPC--TFCEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIK 234
H H E+ FPC CEK F HL H+ THTGEK + C CD RF ++ K
Sbjct: 24 HLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKK 83
Query: 235 HLKSSHN 241
H HN
Sbjct: 84 HFNRFHN 90
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 329 QLLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSN 384
+L H H +P+ C + C+K F +HLT H HTGEK + CD C F
Sbjct: 20 KLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 79
Query: 385 DMKKHRRTVH 394
+MKKH H
Sbjct: 80 NMKKHFNRFH 89
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 187 RKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIKH 235
+++ C+F C ++ + L+ H HTGEKP+ C C+K F + +H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+P+ CT C K+F+ K +L TH RIHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
++ F CT C KSF+ K +L H R HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K+F + L TH RIHTGEKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C KSF L H R HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKP++C CG+ F+ S+ + H+R
Sbjct: 10 EKPFECAECGKSFSISSQLATHQR 33
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
+PY CT+C K F +K+H TH RIHTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
E+ + CT C K+F RK H H R HTGE
Sbjct: 8 EKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRR 391
+GEKPY C CG+ F + + H R
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHER 31
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 335 RLHFPLRPYACTQCDKTFKKKNHLTTHY-RIHTGE---KPYQCDICGRGFAQSNDMKKH 389
R H +PYAC+ CDKTF++K L H+ R H + C CG+ F + N M +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 209 RTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDF 244
RTHTGEKPYAC CDK F Q H K H+ +F
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 43
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
R HTGEKPY C C + F Q + H + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
++PY C+QC KTF K+ L H R HTG KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGI 154
Y C QC +T+ K L VH+R+H G+
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGV 38
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
+ + C+ C K+F K L VH R+HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
RP+ C +C K+F + HL H RIHTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
ER C C KSF + HL H R HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
E+P++C+ CG+ F QS + +H+R
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQR 33
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 183 HAHERKFPC--TFCEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLKS 238
H E+ FPC CEK F HL H+ THTGEK + C CD RF ++ KH
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 239 SHN 241
HN
Sbjct: 97 FHN 99
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 341 RPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDMKKHRRTVHKA 396
+P+ C + C+K F +HLT H HTGEK + CD C F +MKKH H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Query: 397 QI 398
+I
Sbjct: 101 KI 102
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 343 YAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQC--DICGRGFAQSNDMKKHRRT 392
Y C C K FKK N L H HT + PY+C + C + F+ + +K+H +
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 187 RKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIKH 235
+++ C+F C ++ + L+ H HTGEKP+ C C+K F + +H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKH 389
RP+ C C KT++ + L+ H R H G +P C CG+ F +++ +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHN 241
ER F C FC K+++ L H R H G +P +C C K F S+ +HLK N
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 319 VCDVCGEYKKQ---LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIH 365
C+ CG+ + L +H+R H RP +C +C K F+ ++ + H ++H
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 131 CDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
C+ C +TY+ L HRRAHLG YR +S C C K + + + + H+ K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLG--YRPRS----CPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K++ ++ HLT H R+HTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C KS+ +++HL H R HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + HL H R+HTGEKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F + HL H R HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C CG+ F+Q+ + +H+R VH +
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQR-VHTGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C QC K F ++ LTTH IHTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F + L H HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F+ ++LTTH IHTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F+ +L H HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
RPY C +C K FK K+ L H R HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
+R + C C K+FK K L H R+HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSG 42
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + ++TK SL HRR+H G
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTG 37
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F+ ++L+ H RIHTGEKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K F+ +L H R HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C+ C K+F KK+ L H RIHTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C+ C KSF +K L VH R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSG 42
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY+C CG+ F + + + H+R
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQR 33
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
++PY C +C K F + LTTH IHTGEKP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
RPY CT C K F +++L H +IHTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
ER + CT C K+F + +L H + HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
E+PY C +CG+ F +++ KH++ +H +
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQK-IHTGE 38
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 214 EKPYACYLCDKRFAQISDRIKHLK 237
E+PY C +C K F S+ IKH K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQK 33
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + +HL H RIHTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K F + HL H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY+C+ CG+ F Q++ + H+R
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQR 33
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C+ C K+F KK+ L H +IHTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C+ C KSF +K L VH + HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQIHAVE 402
EKPY+C ICG+ F + + + H+ QIH E
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQ------QIHTGE 38
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C +C K F K++L H RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ + C C K F K +L VH R HTGEK
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRR 391
+GEKPY C+ CG+ F+ + + H+R
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQR 31
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + + +K L VH+R H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F++ +HL H IHTGEKP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K F+R HL H HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K F + +HL +H R+HTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C K F + HL H R HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKP+QC+ CG+ F Q++ + H+R VH +
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQR-VHTGE 38
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F +++L TH +IHTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F + +L H + HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + +HL H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C C K F + HL H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHR 390
EKPY+C+ CG+ F Q++ + +HR
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHR 32
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
R Y C++C K F +K+ L H RIHTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
ER + C+ C K+F RK L +H R HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C QC K F +K L H R+HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F +K L VH R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y CDQC + + K SL VH R H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKPY+CD CG+ F+Q + H R
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRV 33
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + +HL H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C C K F + HL H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHR 390
EKPY+C+ CG+ F Q++ + +HR
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR 32
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + + L H RIHTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY+C+ CG+ F+Q++ + +H+R
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQR 33
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F + L H R HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C+ C+K+F K +L VH RTHTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C++C K F K++L H R HTGEKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +C + + TK +L VH+R H G
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTG 37
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + +HL H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
++ + C C K F + HL H HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHR 390
+KPY+C+ CG+ F Q++ + +HR
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHR 32
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + +HL H R+HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKPY+C+ CG+ F Q++ + +HRR
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRV 34
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C C K F + HL H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTG 367
+RPY+C+ C K F K+ + THYR+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRT 392
+PY C +CG+ F+ + M+ H R
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRV 25
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + + L H R+HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
KPYQC+ CG+ F+Q++ + +H+R VH +
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQR-VHTGE 38
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
+ + C C K+F + L H R HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C CDK+F++++ L +H IHTGEKP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.079, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ F C C+KSF+++ L H HTGEKP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHR 390
T EKP++CD C + F Q + + HR
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHR 32
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C C K+F+ + LT H RIHTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C KSF+ L VH R HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY+CD+C + F + + H+R
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQR 33
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y CD C ++++ SL VH+R H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C++C K F K++L H R H+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 36.6 bits (83), Expect = 0.028, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C+ C K+F K +L +H RTH+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K F +++ L H+++HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C K F R+ L VH + HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C +C K F+ +++LTTH IHTGEK
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+ C +C KTF + + LT H RIHTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
F C C+K+F + L VH R HTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C++C +T+ SL VH+R H G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+ PY C+QC+K+F K L H R+HT EKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
+ C+ CEKSF KL L VH R HT EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAH 151
Y C QC++++ K L VH+R H
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMH 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C C K F +K HL H + HTGEKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F +K HL H +THTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKPY+C +C + F Q + +H++T
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKT 34
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKP 370
Y C C K F + +HL TH R+HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C C K F + HL+ H R HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EK Y+CD+CG+ F+QS+ ++ H+R VH +
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQR-VHTGE 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGE 368
++PY C +C K F+ K++L H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
+ + C C K+F+ K +L +HTRTHTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + +++K L +H R H G
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C++C K F + HL H RIHTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C+ C K+F R HL H R HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY+C CG+ F + + +HRR
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRR 33
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + L H RIHTGEKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ + C C K+F L+ H R HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSG 42
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY C+ CG+ F + +++H+R
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQR 33
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
R Y C +C K+F++K LT H RIHTG P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
+R + C C KSF++K L +H R HTG P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C ++++ K SL +H R H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+ CT+C K F +K+ L+ H +IHTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
F CT C K+F RK L +H + HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C C K F+ +HL H+ +H+GE+P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F+ HL H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C +CG+ F S+ + +H +VH +
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH-HSVHSGE 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 209 RTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
RTH+GEKPY CY+C RF Q H+ H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKH 389
R H+GEKPY+C IC F QS MK H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH 34
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 180 NEVHAHERKFPCTFCEKSFKRKLHLKVHT-RTHT-GEKPYACYLCDKRFAQISDRIKHLK 237
H+ E+ + C C F + +K+H + HT + C CD A+ SD HL+
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Query: 238 SSHNFDFES 246
H++ S
Sbjct: 67 KQHSYSGPS 75
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P C +C KTF++ + L+ H RIH+GEKP
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRR 391
+G+KP C+ CG+ F QS+ + KH+R
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQR 31
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 191 CTFCEKSFKRKLHLKVHTRTHTGEKP 216
C C K+F++ L H R H+GEKP
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
+PY C +C K F K+ L H RIHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
++ + C C K+F K L +H R HTGE
Sbjct: 8 QKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRR 391
+G+KPY C+ CG+ F + + H R
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHER 31
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
P+ C++C K F K +L H +IHTGE+P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E F C+ C K F K +L +H + HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
R Y C++C K F +K+ L+ H RIH GEKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
ER + C+ C K+F +K L +H R H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C+ C K F + L+ H RIH+G+KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C+ C K+F + L VH R H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY+C +CG+ F+ + H+R
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR 33
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K F + + L +H R+HTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C K F + L H R HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKP++C+ CG+ F Q++ + H+R VH +
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQR-VHTGE 38
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C C K F L H RIHTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C +C K+F L H R HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY CD CG+ F S ++ +H+R
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQR 33
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C +C KTF + HL H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKP 370
Y C +C K F + + L+ H +IHTGEKP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+++ C C K F R L H + HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 319 VCDVCGEYKKQ---LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYR 363
+C+ CG K+ L +H R H +RPY CT C+ +FK K +LT H +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
Y C +C KK + L H R HT +PY C C F ++ KH ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 188 KFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
K+ C C K+ LK H RTHT +PY C C+ F + KH+KS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K+F+ + L H R+H+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C KSF+ L H R H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY C CG+ F ++ + KH+R VH +
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQR-VHSGE 38
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
PY C +C K F +K L +H R H GEKP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E + C C K+F RK L H RTH GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYR-IHTGEKPYQCDI 375
+PY C C K F + +HL H + +HT E+P++C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
KPY C CG+GF++ + + H + VH ++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTR-THTGEKPYAC 219
+ + C C K F R HL H + HT E+P+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEK 215
F C C++ F R HLK HTRTHTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+P+ C C + F + +HL TH R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRT 392
KP+QC C R F++S+ +K H RT
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRT 24
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
+PY CT C K F K+ L H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
+ E+ + CT C K+F K L +H RTHTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GEKPY+C CG+ F + + H+RT
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRT 32
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F+ ++ L H H+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F+ + L +H TH+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K+F ++ L H R+HTG P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRR 391
+GEKPYQC CG+ F+Q + H R
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER 31
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C KSF ++ L VH R HTG P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C +++ + SL VH R H G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY+C +C K F K+ L H +HTG KP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F K L VH HTG KP
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHR 390
+GEKPY C+ CG+ F + + H+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHK 30
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
P+ C +C KTF HL+ H IH GE P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E F C C K+F HL H H GE P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENPSG 42
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
+PY C +C K F K++L H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
E+ + C C+K+F K +L VH RTHTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + + TK +L VH+R H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+ + C +C + F K+HL H RIHTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 191 CTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
C C + F K HL H R HTGEKP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSG 42
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C +C K +K++ L H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ + C C K +KR+L L H R HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C CG+G+ + D+ H+R VH +
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQR-VHTGE 38
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + L TH+ +HTGEKP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C+ CG+GF D+ H VH +
Sbjct: 10 EKPYKCEECGKGFICRRDLYTH-HMVHTGE 38
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F + T H R+HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C CG+ F ++ +H+R +H Q
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQR-LHTGQ 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C C K F L H RIHTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C K+F + L H R HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C C K F LT H R+H+GEKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K+F L H R H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+CD+C + F+ + +H+R VH +
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQR-VHSGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGE 368
PY C++C K F +K+ L +H R H GE
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GE PY+C CG+ F + + + H+RT
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRT 32
Score = 31.6 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
E + C+ C K+F RK L H RTH GE
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
++PY C C + F L H RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K + K +L H ++HTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C K + K +L +H + HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C+ CG+G+ ++ H++ VH +
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQK-VHTGE 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ F C+ CEK+F K +L VH +TH EKP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C+ C+K F K++L H + H EKP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
+PY C +C K F + + L+ H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 34.7 bits (78), Expect = 0.098, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
+GEKPY C CG+ F QS+ + HRR VH +
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRR-VHTGE 36
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
E+ + C C K+F + L +H R HTGE
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C++C K+F LT H+ HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.054, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
RP+ C +C K F +++HL H R+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 32.0 bits (71), Expect = 0.70, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
ER F C C K F R+ HL H R H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K+F + L H RIHTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ C C KSF L VH R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C +C K F +++L H +IHT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 194 CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIKHLK 237
C K+FK+ LKVH +HT + PY C CDKRF+ S +H K
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 343 YAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQC--DICGRGFAQSNDMKKHRRT 392
Y C C K FKK N L H HT + PY+C + C + F+ + +K+H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 194 CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIKHLK 237
C K+FK+ LKVH +HT + PY C CDKRF+ S +H K
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 343 YAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQC--DICGRGFAQSNDMKKHRRT 392
Y C C K FKK N L H HT + PY+C + C + F+ + +K+H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYR-IHTGEKP 370
+PY C +C K F + L H+R HTGEKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
+KPY+C CG+ F Q+ + +H R H +
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGE 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTG 367
+PY C+ C K F K+ L H IHTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHR 390
+GEKPY C CG+ F + + H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQ 30
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
+PY C++C K F + + L H R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
E+ + C+ C K+F R L VH RTH+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRRT 392
T EKPY+C CG+ F +++ + H+RT
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRT 34
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ + C C K + R+L+L +H R H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C C K + ++ +L H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKPY+C+ CG+G+ + ++ H+R VH +
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQR-VHMGE 38
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGE 368
PY C +C K F +K+ L +H + H+G+
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 168 CDKVVTN---LAAHHNEVHAHERKFPCT--FCEKSFKRKLHLKVHTRTHTGEKPYAC 219
C ++ +N L H H H++ F C C KSF K HLK H + H+ + Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 320 CDV--CGEY--KKQLLQH--KRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPY 371
CD CG +Q L H K H + ++C + C K+F K HL H ++H+ + Y
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 372 QCDICG 377
C+ G
Sbjct: 70 ICEFSG 75
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 282 CDL--CGNILSSKHILQEHVRVVHMGLSRKYHYEYK-PDGVCDVCGEYKKQLLQHKRLHF 338
CD CG I S++ L H + H+ + + P+ C +KK L +H +LH
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHI-----HQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 339 PLRPYAC 345
R Y C
Sbjct: 65 DTRDYIC 71
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGE 368
+PY+C C K F HL H R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKPY C++CG+ F S + +H R
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
E+ + C C K+F HL H R HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+ C++C KTF + L H RIHTGE P
Sbjct: 11 HECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ C+ C K+F L +H R HTGE P
Sbjct: 8 EKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C+ C K+F K+ L H + HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ + C+ C KSF K L++H + HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQIHAVEDKG 405
EKPY+C CG+ F + ++ H++ H + H+ G
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSSG 46
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKP 370
Y C +C K+F + L H R+H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C KSF R L H R H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHT 366
+PY+C +C +TF N L H ++HT
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C+ C K F +K+ L H + HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ + C+ C K+F RK L +H ++HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQIHAVEDKG 405
EKPY+C CG+ F + + + H+++ H + H+ G
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGPSSG 46
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
RPY C +C K F + +HL H + H EK
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 214 EKPYACYLCDKRFAQISDRIKHLK 237
E+PY C C K F + S I+HLK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLK 33
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
R + C+ C K F + ++ H RIHTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
ER C+ C K F + + H R HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
++ C C K F+ HL H +H+GEKPY+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 344 ACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
AC C K F+ HL H H+GEKPY
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C C F + HL H IHTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 368 EKPYQCDICGRGFAQSNDMKKH 389
EKPY+C+ CG F Q ++ H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAH 30
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C F + HL+ H HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEK 215
F C C ++F R+ HLK H R+HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+ C C + F ++ HL HYR HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+P C C K F + + L H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 191 CTFCEKSFKRKLHLKVHTRTHTGEK 215
C C K+F + L H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 162 TDRCELCDKV---VTNLAAHHNEVHAHERK-FPCTFCEKSFKRKLHLKVHTR 209
T RC++C +V ++N H+ H K +PC FC K F RK ++ H +
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C +C K F + +H R H+GEKP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ F C C K F H R+H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKP++C+ CG+GF ++ H+R+
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRS 34
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEK 369
P C +C K F +L H RIH+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 171 VVTNLAAHHNEVHAHERKFPCTFCEKSF--KRKLHLKVHTRTHTGEKPYACYLCDKRFAQ 228
++ + A H + + E P F + F K K ++ + T G P C RFA
Sbjct: 373 MIPSYALHRDPKYWTE---PEKFLPERFSKKNKDNIDPYIYTPFGSGPRNC--IGMRFAL 427
Query: 229 ISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTE 273
++ ++ ++ NF F+ K PL L L P +K E
Sbjct: 428 MNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVE 472
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 171 VVTNLAAHHNEVHAHERKFPCTFCEKSF--KRKLHLKVHTRTHTGEKPYACYLCDKRFAQ 228
++ + A H + + E P F + F K K ++ + T G P C RFA
Sbjct: 374 MIPSYALHRDPKYWTE---PEKFLPERFSKKNKDNIDPYIYTPFGSGPRNC--IGMRFAL 428
Query: 229 ISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTE 273
++ ++ ++ NF F+ K PL L L P +K E
Sbjct: 429 MNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVE 473
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 171 VVTNLAAHHNEVHAHERKFPCTFCEKSF--KRKLHLKVHTRTHTGEKPYACYLCDKRFAQ 228
++ + A H + + E P F + F K K ++ + T G P C RFA
Sbjct: 375 MIPSYALHRDPKYWTE---PEKFLPERFSKKNKDNIDPYIYTPFGSGPRNC--IGMRFAL 429
Query: 229 ISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTE 273
++ ++ ++ NF F+ K PL L L P +K E
Sbjct: 430 MNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVE 474
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+ + C C+K FK K+ L H RIHT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEK 215
F C +C K FK K L+ H R HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 279 IFKCDLCGNILSSKHILQEHVRV 301
IF C+ C + KH LQ H+R+
Sbjct: 9 IFTCEYCNKVFKFKHSLQAHLRI 31
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHT 366
P+ C++CD+ F ++N+L H R H
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ C C K+F ++ L H +HT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
EKP++CDICG+ F + + +H VH A+
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH-SMVHTAE 38
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
E+ F C C KSF + L H+ HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
>pdb|1WIR|A Chain A, Solution Structure Of The C2h2 Zinc Finger Domain Of The
Protein Arginine N-methyltransferase 3 From Mus Musculus
Length = 121
Score = 32.0 bits (71), Expect = 0.63, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNK 250
H R HT C CD+ FA + H K H F+ +S+ +K
Sbjct: 11 HGRQHT-----PCLFCDRLFASAEETFSHCKLEHQFNIDSMVHK 49
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+PY C C F+ L +H RIHTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ +PC C F+ LK H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRR 391
EKPY C+ICG F +K H R
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLR 32
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.0 bits (71), Expect = 0.70, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GEKPY C +CG F + + M H R+
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRS 32
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTG 367
+PY+C C FK+K+ ++ H R H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 212 TGEKPYACYLCDKRFAQISDRIKHLKSSHN 241
+GEKPY+C +C RF + DR+ + SH+
Sbjct: 6 SGEKPYSCPVCGLRFKR-KDRMSYHVRSHD 34
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTG 213
E+ + C C FKRK + H R+H G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C QC K +L H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.87, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGE 368
+ C C K F K+ L H RIHTGE
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
E+ C C K+F K L +H R HTGE
Sbjct: 8 EKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 341 RPYACTQ--CDKTFKKKNHLTTHYRIHTGEK 369
RP+ CT C K F + + L H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 187 RKFPCTF--CEKSFKRKLHLKVHTRTHTGEK 215
R F CT+ C K F R L+ H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|1CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|2CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|3CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|4CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|1E26|A Chain A, Design, Synthesis And X-Ray Crystal Structure Of A Potent
Dual Inhibitor Of Thymidylate Synthase And Dihydrofolate
Reductase As An Antitumor Agent.
pdb|1LY3|A Chain A, Analysis Of Quinazoline And Pyridopyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1LY4|A Chain A, Analysis Of Quinazoline And Pyrido[2,3d]pyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1KLK|A Chain A, Crystal Structure Of Pneumocystis Carinii Dihydrofolate
Reductase Ternary Complex With Pt653 And Nadph
pdb|1S3Y|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|2FZH|A Chain A, New Insights Into Dihydrofolate Reductase Interactions:
Analysis Of Pneumocystis Carinii And Mouse Dhfr
Complexes With Nadph And Two Highly Potent Trimethoprim
Derivatives
pdb|2FZI|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
And Two Highly Potent Trimethoprim Derivatives
pdb|1DAJ|A Chain A, Comparison Of Ternary Complexes Of Pneumocystis Carinii
And Wild Type Human Dihydrofolate Reductase With
Coenzyme Nadph And A Novel Classical Antitumor
Furo[2,3d]pyrimidine Antifolate
pdb|1DYR|A Chain A, The Structure Of Pneumocystis Carinii Dihydrofolate
Reductase To 1.9 Angstroms Resolution
pdb|3NZ6|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZ9|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZA|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZB|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Potent
5-(Omega-Carboxyl(Alkyloxy) Pyrido[2,-D]pyrimidine
Derivatives
pdb|3NZC|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyridine
Derivativea
pdb|3TD8|A Chain A, Structural Analysis Of Pneumocystis Carinii Dihydrofolate
Reductase Complex With Nadph And
2,4-Diamino-5-Methyl-6-[2'-(4-Carboxy-1-
Pentynyl)-5'-Methoxybenzyl]pyrido[2,3-D]pyrimidine
Length = 206
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 85 KTLPLTYPCAKTKTRTSADDLETLEISNTPTSAANVENKTLPLTYPCDQCDRTYQTKKSL 144
+++PL + K + E+L++ N SA ++++ L L Y RTY ++ S+
Sbjct: 63 ESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDH-ALELLY------RTYGSESSV 115
Query: 145 YVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSF 198
++R +G YK+ D +L D+++ + + ++H + FP F +K +
Sbjct: 116 QINRIFVIGGAQLYKAAMDHPKL-DRIMATII--YKDIHC-DVFFPLKFRDKEW 165
>pdb|1VJ3|A Chain A, Structural Studies On Bio-Active Compounds. Crystal
Structure And Molecular Modeling Studies On The
Pneumocystis Carinii Dihydrofolate Reductase Cofactor
Complex With Tab, A Highly Selective Antifolate
Length = 205
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 85 KTLPLTYPCAKTKTRTSADDLETLEISNTPTSAANVENKTLPLTYPCDQCDRTYQTKKSL 144
+++PL + K + E+L++ N SA ++++ L L Y RTY ++ S+
Sbjct: 62 ESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDH-ALELLY------RTYGSESSV 114
Query: 145 YVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSF 198
++R +G YK+ D +L D+++ + + ++H + FP F +K +
Sbjct: 115 QINRIFVIGGAQLYKAAMDHPKL-DRIMATII--YKDIHC-DVFFPLKFRDKEW 164
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEK 215
F C C ++F R+ +LK H R+HT EK
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+ C C + F ++ +L HYR HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRT 392
KPYQCD CGR F+ +H T
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLET 25
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
R TG KP+QC C R F++S+ + HR+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIH 365
++P+ C CD++F + +HL H + H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTG 367
+PY C +C K F K+ L H R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKPY+C+ CG+ F + + H RT
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERT 34
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTG 213
E+ + C C K+F K L VH RTH G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 345 CTQCDKTFKKKNHLTTHYRIHT---GEKPYQCDICGRGFAQSNDMKKHRRTVHKAQIHAV 401
C C T ++K L H R H + C+ CG+ F + + + HR H A + A
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 402 ED 403
++
Sbjct: 70 QE 71
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+ + C +CD F + + L H +H GEKP
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C+ F + L++H H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHT 366
+ C +C+KTF +LT H RIHT
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEK 369
+AC +C K F + +HLT H +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 201 KLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHN 241
K L++H R H ++P+ C C Q S+ KH+K H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 355 KNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
K L H RIH ++P++C+ C Q +++ KH + H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 345 CTQCDKTFKKKNHLTTHYRIHTGEK 369
C + K+FK K L H R+HTGEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEK 215
F C C ++F R+ LK H R+HT EK
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+ C C + F ++ L HYR HT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 341 RPYACT--QCDKTFKKKNHLTTHYRIHTGEKP 370
+P+ACT C F + + L+ H R H+G KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKP 216
E+ F CT+ C F R L H R+H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHT 366
Y C +C K F + HLT H +IHT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIH 365
++P+ C CD +F + +HL H + H
Sbjct: 5 IKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRTVH 394
K YQC C + FA S+++K H +T H
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKH 26
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 373 CDICGRGFAQSNDMKKHRRTVHKAQI 398
C +CG FA ++H R +H AQ+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQV 56
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 217 YACYLCDKRFAQISDRIKHLKSSHNFD 243
Y C +C+ RF+ +S +HL+S H D
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDD 143
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRR 391
KPY C+ CG+ F QS+ + H R
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 217 YACYLCDKRFAQISDRIKHLKSSHNFD 243
Y C +C+ RF+ +S +HL+S H D
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRDD 125
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+P CT+C K F K+ L H R H +K
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 348 CDKTFKKKNHLTTHYRIHTGEK 369
C K + K +HL H R HTGE+
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEK 369
+AC +C K F + +HL+ H + H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRT 392
EKP+QC CG F+ S + KH R+
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRS 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,073,486
Number of Sequences: 62578
Number of extensions: 479963
Number of successful extensions: 2494
Number of sequences better than 100.0: 203
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 1002
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)