RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy359
         (405 letters)



>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 203 HLKVHTRTHTGEKPYACYLCDKRFAQ 228
           +L+ H RTHTGEKPY C +C K F+ 
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26



 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 357 HLTTHYRIHTGEKPYQCDICGRGFAQ 382
           +L  H R HTGEKPY+C +CG+ F+ 
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26



 Score = 29.7 bits (67), Expect = 0.17
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 330 LLQHKRLHFPLRPYACTQCDKTFK 353
           L +H R H   +PY C  C K+F 
Sbjct: 2   LRRHMRTHTGEKPYKCPVCGKSFS 25


>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies).  This
           family contains two copies of a C2H2-like zinc finger
           domain.
          Length = 100

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 16/84 (19%)

Query: 219 CYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTP--LTRYLNKHLHDAHPEAIKTERER 276
           C  C+     + + ++H+  SH F     +       L  YL + +H+ +          
Sbjct: 2   CLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHEGN---------- 51

Query: 277 KLIFKCDLCGNILSSKHILQEHVR 300
               +C  CG    S   L++H+R
Sbjct: 52  ----ECLYCGKQFKSLEALRQHMR 71


>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
           transition [Transcription / Cell division and chromosome
           partitioning].
          Length = 423

 Score = 37.4 bits (86), Expect = 0.011
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 23/76 (30%)

Query: 341 RPYAC--TQCDKTFKKKNHLTTHYRIH--------------------TGEKPYQCDICGR 378
           +PY C    C+K +K +N L  H  +H                      +KPY+C++C +
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYH-MLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDK 406

Query: 379 GFAQSNDMKKHRRTVH 394
            +   N +K HR+  H
Sbjct: 407 RYKNLNGLKYHRKHSH 422



 Score = 28.9 bits (64), Expect = 5.4
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 21/76 (27%)

Query: 186 ERKFPCTF--CEKSFKRKLHLKVH-------TRTH------------TGEKPYACYLCDK 224
            + + C    C K +K +  LK H        + H              +KPY C +CDK
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDK 406

Query: 225 RFAQISDRIKHLKSSH 240
           R+  ++    H K SH
Sbjct: 407 RYKNLNGLKYHRKHSH 422


>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
           only].
          Length = 467

 Score = 35.4 bits (81), Expect = 0.051
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 185 HERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLKSSHN 241
             R   C  C  SF R  HL  H R+HTGEKP  C    CDK F++  +  +HL++ HN
Sbjct: 30  APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHN 88



 Score = 33.9 bits (77), Expect = 0.15
 Identities = 21/54 (38%), Positives = 27/54 (50%)

Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
           RP +C  C  +F +  HLT H R HTGEKP QC   G   + S  ++  R    
Sbjct: 32  RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRT 85


>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
          Length = 215

 Score = 34.4 bits (80), Expect = 0.073
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
           R +     R YH ++ P   +G CDVCGE
Sbjct: 127 RRICPACGRTYHVKFNPPKVEGKCDVCGE 155


>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase. 
          Length = 186

 Score = 33.8 bits (78), Expect = 0.089
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 267 PEAIKTERERKLIFKCDLCGNILSSKHILQEHV--RVVHMGLSRKYHYEYKP---DGVCD 321
           P+A   E   +   K D          +L E +  R +H    R YH E+ P    G  D
Sbjct: 87  PQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLTGRRIHPNSGRSYHLEFNPPKVPGKDD 146

Query: 322 VCGE 325
           V GE
Sbjct: 147 VTGE 150


>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger. 
          Length = 23

 Score = 29.7 bits (67), Expect = 0.13
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 343 YACTQCDKTFKKKNHLTTHYRIH 365
           Y C +C K FK K+ L  H R H
Sbjct: 1   YRCPECGKVFKSKSALREHMRTH 23



 Score = 28.2 bits (63), Expect = 0.52
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 189 FPCTFCEKSFKRKLHLKVHTRTH 211
           + C  C K FK K  L+ H RTH
Sbjct: 1   YRCPECGKVFKSKSALREHMRTH 23



 Score = 25.5 bits (56), Expect = 4.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 371 YQCDICGRGFAQSNDMKKHRRT 392
           Y+C  CG+ F   + +++H RT
Sbjct: 1   YRCPECGKVFKSKSALREHMRT 22



 Score = 25.1 bits (55), Expect = 6.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 129 YPCDQCDRTYQTKKSLYVHRRAH 151
           Y C +C + +++K +L  H R H
Sbjct: 1   YRCPECGKVFKSKSALREHMRTH 23


>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
          Length = 234

 Score = 33.0 bits (74), Expect = 0.19
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 37  QTTDDSYIVPAISQQSESTLKTKTRTSADDLETLEISNTPTSAANVENKTLPLTYPCAKT 96
            TT  + I       + +T  T T T+   + T   ++T      V  + +  T     T
Sbjct: 61  LTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGT 120

Query: 97  K--------TRTSADDLETLEISNTPTSAANVENKT 124
                    TR+S+    T  I+N  T A  + +K 
Sbjct: 121 STGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKG 156


>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
          Length = 567

 Score = 33.7 bits (77), Expect = 0.20
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 24/124 (19%)

Query: 282 CDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQLLQHKRLHFPLR 341
           C+ CG        +++H++V H  L             C V  E K+Q++QH+    PLR
Sbjct: 456 CEKCGQAFQQGE-MEKHMKVFHEPLQCP----------CGVVLE-KEQMVQHQASTCPLR 503

Query: 342 PYACTQCDKTFKKKNH----------LTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
              C  C    +              ++ H  I  G +   CD CGR      +M  H+ 
Sbjct: 504 LITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRTAPCDSCGRS-VMLKEMDIHQI 561

Query: 392 TVHK 395
            VH+
Sbjct: 562 AVHQ 565


>gnl|CDD|218488 pfam05191, ADK_lid, Adenylate kinase, active site lid.  Comparisons
           of adenylate kinases have revealed a particular
           divergence in the active site lid. In some organisms,
           particularly the Gram-positive bacteria, residues in the
           lid domain have been mutated to cysteines and these
           cysteine residues are responsible for the binding of a
           zinc ion. The bound zinc ion in the lid domain, is
           clearly structurally homologous to Zinc-finger domains.
           However, it is unclear whether the adenylate kinase lid
           is a novel zinc-finger DNA/RNA binding domain, or that
           the lid bound zinc serves a purely structural function.
          Length = 36

 Score = 29.4 bits (67), Expect = 0.24
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
           R V     R YH ++ P   +GVCD CG 
Sbjct: 1   RRVCPSCGRIYHVKFNPPKVEGVCDKCGG 29


>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type.  The C2H2 zinc finger
           is the classical zinc finger domain. The two conserved
           cysteines and histidines co-ordinate a zinc ion. The
           following pattern describes the zinc finger.
           #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
           be any amino acid, and numbers in brackets indicate the
           number of residues. The positions marked # are those
           that are important for the stable fold of the zinc
           finger. The final position can be either his or cys. The
           C2H2 zinc finger is composed of two short beta strands
           followed by an alpha helix. The amino terminal part of
           the helix binds the major groove in DNA binding zinc
           fingers. The accepted consensus binding sequence for Sp1
           is usually defined by the asymmetric hexanucleotide core
           GGGCGG but this sequence does not include, among others,
           the GAG (=CTC) repeat that constitutes a high-affinity
           site for Sp1 binding to the wt1 promoter.
          Length = 22

 Score = 28.5 bits (64), Expect = 0.39
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 345 CTQCDKTFKKKNHLTTHYRIH 365
           C  C K+F +K++L  H R H
Sbjct: 2   CPDCGKSFSRKSNLKRHLRTH 22



 Score = 28.5 bits (64), Expect = 0.47
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 191 CTFCEKSFKRKLHLKVHTRTH 211
           C  C KSF RK +LK H RTH
Sbjct: 2   CPDCGKSFSRKSNLKRHLRTH 22


>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
           2'-phosphodiesterase/3'-nucleotidase precursor protein;
           Reviewed.
          Length = 814

 Score = 31.0 bits (70), Expect = 1.3
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 32  NLFLVQTTDDSYIVPAISQQSESTLKTKTRTSADDLETLEISNTPTSAANVENKTLPLTY 91
           N  L Q  +     PA S ++E T  T   + A +    E  NT T  A       P + 
Sbjct: 22  NPKLAQAEEIVTTTPATSTEAEQT--TPVESDATE----EADNTETPVAATTAAEAPSSS 75

Query: 92  PCAKTKTRTSADDLETLEISNTPTSAANVENK 123
             A+T   TS     T   + T T AA   +K
Sbjct: 76  ETAETSDPTSEATDTTTSEARTVTPAATETSK 107


>gnl|CDD|226535 COG4049, COG4049, Uncharacterized protein containing archaeal-type
           C2H2 Zn-finger [General function prediction only].
          Length = 65

 Score = 28.0 bits (62), Expect = 1.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 209 RTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHD 264
           R   GE+   C  C   F +  D I+H+  +H + F   K K   L +  +K L D
Sbjct: 10  RDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGWLFGRGKPKGKRLKKKYDKLLSD 65


>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger.  This family contains
           a number of divergent C2H2 type zinc fingers.
          Length = 24

 Score = 26.8 bits (59), Expect = 1.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)

Query: 189 FPCTFCEKSFKRKLHLKVHTRTH 211
           F C  C KSF  K  LK H R H
Sbjct: 1   FKCPLCGKSFSSKDALKRHLRKH 23



 Score = 26.4 bits (58), Expect = 2.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 371 YQCDICGRGFAQSNDMKKHRRTVH 394
           ++C +CG+ F+  + +K+H R  H
Sbjct: 1   FKCPLCGKSFSSKDALKRHLRKHH 24



 Score = 26.1 bits (57), Expect = 3.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 343 YACTQCDKTFKKKNHLTTHYRIH 365
           + C  C K+F  K+ L  H R H
Sbjct: 1   FKCPLCGKSFSSKDALKRHLRKH 23


>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
           superfamily II helicase [DNA replication, recombination,
           and repair].
          Length = 730

 Score = 30.4 bits (69), Expect = 2.1
 Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 345 CTQCDK--TF-KKKNHLTTHYRIHTGEKPYQCDICG 377
           C  CD   T  K    L  HY  +    P  C  CG
Sbjct: 447 CPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECG 482


>gnl|CDD|233569 TIGR01776, TonB-tbp-lbp, TonB-dependent lactoferrin and transferrin
           receptors.  This family of TonB-dependent receptors are
           responsible for import of iron from the mammalian iron
           carriers lactoferrin and transferrin across the outer
           membrane. These receptors are found only in bacteria
           which can infect mammals such as Moraxella, Mannheimia,
           Neisseria, Actinobacillus, Pasteurella, Haemophilus and
           Histophilus species [Transport and binding proteins,
           Cations and iron carrying compounds, Transport and
           binding proteins, Porins].
          Length = 932

 Score = 29.8 bits (67), Expect = 3.3
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 147 HRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKV 206
           H +   G+ YRYK++ D     D    +L     E+ +  ++  C+   K  K       
Sbjct: 417 HTKRRYGLEYRYKNE-DYDRWLDTAKLSLDKQKIELRSRLQELHCSQYPKVDK------- 468

Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTT 252
                + +KPY+ Y  D+   +    +   +   +FD    ++   
Sbjct: 469 -NCRPSLDKPYSFYKNDRNHYKEKHNVIQAEFDKSFDLGGGRHHLN 513


>gnl|CDD|132218 TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein
           Csc3/Cas10d.  CRISPR (Clustered Regularly Interspaced
           Short Palindromic Repeats) is a widespread family of
           prokaryotic direct repeats with spacers of unique
           sequence between consecutive repeats. This protein
           family is a CRISPR-associated (Cas) family strictly
           associated with the Cyano subtype of CRISPR/Cas locus,
           found in several species of Cyanobacteria and several
           archaeal species. This family is designated Csc3 for
           CRISPR/Cas Subtype Cyano protein 3, as it is often the
           third gene upstream of the core cas genes,
           cas3-cas4-cas1-cas2 [Mobile and extrachromosomal element
           functions, Other].
          Length = 953

 Score = 29.5 bits (66), Expect = 3.7
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 17/120 (14%)

Query: 217 YACYLCDKRF-AQISDRIKHLKSSH-NFDFESVKNKTT-----PLTRYLNKHLHDAHPEA 269
           +  Y+ +  F AQ     +H+ S+H    +     + T      L    +     + P  
Sbjct: 96  WRDYIAEISFLAQNVHGKQHISSNHSTAGYNFTLKERTLRPLRHLLLLADSAASLSSPHD 155

Query: 270 IKTERERKLIFKCDLCGNILSSKHILQEHV----RVVHMGLSR---KYHYE---YKPDGV 319
             +   +  +      G      H L+E       VVH  +     K  Y+   +   GV
Sbjct: 156 AVSSTMKDRLRFLLNRGGFELRYHHLRETTGVLSNVVHNAVLETVQKLDYKPLLFFAQGV 215


>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger. 
          Length = 27

 Score = 26.0 bits (58), Expect = 3.9
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 128 TYPCDQCDRTYQTKKSLYVHRRAH 151
            + C  C +T+ + ++L  H+++H
Sbjct: 1   VHTCGVCGKTFSSLQALGGHKKSH 24


>gnl|CDD|222718 pfam14376, Haem_bd, Haem-binding domain.  This domain contains a
           potential haem-binding motif, CXXCH. This family is
           found in association with pfam00034 and pfam03150.
          Length = 135

 Score = 28.0 bits (63), Expect = 4.6
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)

Query: 245 ESVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLI 279
           E ++    P   Y    LH   PEA  +E E++ +
Sbjct: 98  EVIEEGEMPPASYT--LLH---PEAKLSEEEKQAL 127


>gnl|CDD|238478 cd00974, DSRD, Desulforedoxin (DSRD) domain; a small non-heme iron
           domain present in the desulforedoxin (rubredoxin
           oxidoreductase) and desulfoferrodoxin proteins of some
           archeael and bacterial methanogens and sulfate/sulfur
           reducers. Desulforedoxin is a small, single-domain
           homodimeric protein; each subunit contains an iron atom
           bound to four cysteinyl sulfur atoms, Fe(S-Cys)4, in a
           distorted tetrahedral coordination. Its metal center is
           similar to that found in rubredoxin type proteins.
           Desulforedoxin is regarded as a potential redox partner
           for rubredoxin. Desulfoferrodoxin forms a homodimeric
           protein, with each protomer comprised of two domains,
           the N-terminal DSRD domain and C-terminal superoxide
           reductase-like (SORL) domain. Each domain has a distinct
           iron center: the DSRD iron center I, Fe(S-Cys)4; and the
           SORL iron center II, Fe[His4Cys(Glu)].
          Length = 34

 Score = 25.8 bits (57), Expect = 4.8
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 10/27 (37%)

Query: 279 IFKCDLCGNILSSKHILQEHVRVVHMG 305
           ++KC++CGNI          V V+++G
Sbjct: 4   VYKCEICGNI----------VEVLNVG 20


>gnl|CDD|237118 PRK12496, PRK12496, hypothetical protein; Provisional.
          Length = 164

 Score = 28.0 bits (63), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 305 GLSRKYHYEYKPDGVCDVCG 324
           G  +KY  +Y PD VC++CG
Sbjct: 132 GCKKKYPEDY-PDDVCEICG 150


>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
           Zn-finger [General function prediction only].
          Length = 493

 Score = 28.4 bits (63), Expect = 6.8
 Identities = 32/160 (20%), Positives = 48/160 (30%), Gaps = 40/160 (25%)

Query: 106 ETLEISNTPTSAANVENKTLPLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRC 165
           E + I        +     L    P  +C R   + K L  H          YK++    
Sbjct: 131 EKVGIFYEGEDVRDEMEDLLSFKCPKSKCHRRCGSLKELKKH----------YKAQHGFV 180

Query: 166 ELCDKVVTNLAA--------------HHNEVHAHERKFP----CTFCEKSFKRKLHLKVH 207
            LC + + N                  H      E  F     C FC+  F     L+ H
Sbjct: 181 -LCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRH 239

Query: 208 TRTHTGEKPYACYLCDK-------RFAQISDRIKHLKSSH 240
            R     +  AC++CD         F    D   H +++H
Sbjct: 240 CR----LRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH 275


>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
          Length = 881

 Score = 28.5 bits (64), Expect = 8.4
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 224 KRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKCD 283
           K+F  + D  K +K   +  FE++         +  +++ D +P  IK +R +  I   D
Sbjct: 58  KKFDSMRDARKWMKRMKDVGFEALGM-----DDFKLQYISDTYPGEIKYDRSKIRIANLD 112

Query: 284 L 284
           +
Sbjct: 113 I 113


>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
           This domain family is found in archaea and eukaryotes,
           and is approximately 30 amino acids in length. The
           mammalian members of this group occur multiple times
           along the protein, joined by flexible linkers, and are
           referred to as JAZ - dsRNA-binding ZF protein -
           zinc-fingers. The JAZ proteins are expressed in all
           tissues tested and localise in the nucleus, particularly
           the nucleolus. JAZ preferentially binds to
           double-stranded (ds) RNA or RNA/DNA hybrids rather than
           DNA. In addition to binding double-stranded RNA, these
           zinc-fingers are required for nucleolar localisation.
          Length = 27

 Score = 24.8 bits (55), Expect = 9.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 342 PYACTQCDKTFKKKNHLTTHYR 363
            + C  CDK FK +N L  H +
Sbjct: 1   QFYCVACDKYFKSENALENHLK 22


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0666    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,923,293
Number of extensions: 1675618
Number of successful extensions: 1608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1593
Number of HSP's successfully gapped: 81
Length of query: 405
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 306
Effective length of database: 6,546,556
Effective search space: 2003246136
Effective search space used: 2003246136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)