RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy359
(405 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 126 bits (319), Expect = 8e-35
Identities = 71/226 (31%), Positives = 99/226 (43%), Gaps = 55/226 (24%)
Query: 173 TNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDR 232
++ A + E+ + C C KSF R HL H RTHTGEKPY C C K F+ D
Sbjct: 7 SSSVAQA-ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 233 IKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKT-ERERKLIFKCDLCGNILSS 291
+H + T E+ +KC CG S
Sbjct: 66 TRHQR--------------------------------THTGEKP----YKCPECGKSFSQ 89
Query: 292 KHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGE---YKKQLLQHKRLHFPLRPYACT 346
+ L+ H R H G E Y C CG+ L H+R H +PY C
Sbjct: 90 RANLRAHQRT-HTG-------EKPYA----CPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 347 QCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+C K+F ++++L TH R HTGEKPY+C CG+ F++ + + H+RT
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 112 bits (283), Expect = 1e-29
Identities = 60/202 (29%), Positives = 81/202 (40%), Gaps = 54/202 (26%)
Query: 197 SFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTR 256
S GEKPYAC C K F++ +H +
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR------------------- 42
Query: 257 YLNKHLHDAHPEAIKT-ERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE-- 313
T E+ +KC CG S K L H R H G E
Sbjct: 43 -------------THTGEKP----YKCPECGKSFSDKKDLTRHQR-THTG-------EKP 77
Query: 314 YKPDGVCDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
YK C CG+ + L H+R H +PYAC +C K+F + HL H R HTGEKP
Sbjct: 78 YK----CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 371 YQCDICGRGFAQSNDMKKHRRT 392
Y+C CG+ F++ +++ H+RT
Sbjct: 134 YKCPECGKSFSREDNLHTHQRT 155
Score = 105 bits (264), Expect = 6e-27
Identities = 68/239 (28%), Positives = 89/239 (37%), Gaps = 64/239 (26%)
Query: 141 KKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAHERKFPCTFCEKS 197
S G K C C K + +LA H H E+ + C C KS
Sbjct: 6 SSSSVAQAALEPG------EKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKS 58
Query: 198 FKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRY 257
F K L H RTHTGEKPY C C K F+Q ++ H +
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-------------------- 98
Query: 258 LNKHLHDAHPEAIKT-ERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--Y 314
T E+ + C CG S L+ H R H G E Y
Sbjct: 99 ------------THTGEKP----YACPECGKSFSQLAHLRAHQR-THTG-------EKPY 134
Query: 315 KPDGVCDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
K C CG+ + L H+R H +PY C +C K+F +++ L H R HTG+K
Sbjct: 135 K----CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 75.6 bits (187), Expect = 3e-16
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAH 185
Y C +C +++ L H+R H G K +C C K + +L H H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTG------EKPYKCPECGKSFSDKKDLTRHQR-THTG 74
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
E+ + C C KSF ++ +L+ H RTHTGEKPYAC C K F+Q++ H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 74.8 bits (185), Expect = 5e-16
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAH 185
Y C +C +++ + +L H+R H G K C C K + +L AH H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTG------EKPYACPECGKSFSQLAHLRAHQR-THTG 130
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
E+ + C C KSF R+ +L H RTHTGEKPY C C K F++ H
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 58.2 bits (142), Expect = 3e-10
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAH 185
Y C +C +++ L H+R H G K +C C K + NL H H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTG------EKPYKCPECGKSFSREDNLHTHQ-RTHTG 158
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
E+ + C C KSF R+ L VH RTHTG+K
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 101 bits (255), Expect = 9e-26
Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 64/234 (27%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIK 234
+ +++ C+F C ++ + L+ H HTGEKP+ C C+K F + +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 235 HLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLI------FKCD--LCG 286
H L F CD C
Sbjct: 63 H-----------------------------------------SLTHTGEKNFTCDSDGCD 81
Query: 287 NILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCG---EYKKQLLQHKRLHFPLRPY 343
++K +++H + Y + CG + QL H+ H PY
Sbjct: 82 LRFTTKANMKKHFNR-FHN-IKICVYVCHFEN----CGKAFKKHNQLKVHQFSHTQQLPY 135
Query: 344 ACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHK 395
C CDK F + L H ++H G + D C KH H+
Sbjct: 136 ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 74.6 bits (184), Expect = 7e-16
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 331 LQHKRLHFPLRPYAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQCD--ICGRGFAQSNDM 386
+ K L + Y C C + K L H HTGEKP+ C C +GF + +
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 387 KKHRRT 392
+H T
Sbjct: 61 TRHSLT 66
Score = 63.4 bits (155), Expect = 6e-12
Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 129 YPCDQ--CDRTYQTKKSLYVHRRAHLGI-VYRYKSKTDRCELCDKVVTNLAAHHNEVHAH 185
+ CD CD + TK ++ H I + Y + C K L H H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQ 131
Query: 186 ERKFPCT--FCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHN 241
+ + C C+K F LK H + H G C + +KH+ H
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 49.5 bits (119), Expect = 3e-07
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 40/115 (34%)
Query: 129 YPCDQ--CDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHE 186
+PC + C++ + + L H H G E
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTG--------------------------------E 70
Query: 187 RKFPCT--FCEKSFKRKLHLKVHTRTHTGEK--PYACYL--CDKRFAQISDRIKH 235
+ F C C+ F K ++K H K Y C+ C K F + + H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 93.1 bits (232), Expect = 6e-23
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLLQHKRL 336
C S+ H L HV + H+G + ++ + C G+ K +L+ H R+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-CPREGKSFKAKYKLVNHIRV 84
Query: 337 HFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDMKKHRRT 392
H +P+ C C K F + +L H R HTGEKP++C+ C R FA S+D KKH
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 89.3 bits (222), Expect = 2e-21
Identities = 45/117 (38%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG---IVYRYKSKTDRCELCDK---VVTNLAAHHNEV 182
P CDRT+ T L H + + C K L H V
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RV 84
Query: 183 HAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKH 235
H E+ FPC F C K F R +LK+H RTHTGEKP+ C CD+RFA SDR KH
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 79.3 bits (196), Expect = 8e-18
Identities = 37/191 (19%), Positives = 55/191 (28%), Gaps = 49/191 (25%)
Query: 194 CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTP 253
S + + CD+ F+ + +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHE---------------------- 40
Query: 254 LTRYLNKHLHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE 313
L H+ H + +C G +K+ L H+RV H G E
Sbjct: 41 ----LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HTG-------E 88
Query: 314 YKPDGVCDV--CGEYKKQ------LLQHKRLHFPLRPYACT--QCDKTFKKKNHLTTHYR 363
KP C CG K L HKR H +P+ C CD+ F + H
Sbjct: 89 -KPF-PCPFPGCG---KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Query: 364 IHTGEKPYQCD 374
+HT +K
Sbjct: 144 VHTSDKSGPSS 154
Score = 77.3 bits (191), Expect = 3e-17
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 318 GVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQ----- 372
G G+ KQ L K + CD+TF + L TH + P Q
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 373 ----CDICGRGFAQSNDMKKHRRT 392
C G+ F + H R
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRV 84
Score = 58.5 bits (142), Expect = 1e-10
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRC--ELCDKVVT---NLAAHHNEVH 183
C + ++++ K L H R H G K C C K+ NL H H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTG------EKPFPCPFPGCGKIFARSENLKIHK-RTH 115
Query: 184 AHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C F C++ F K H HT +K
Sbjct: 116 TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 53.8 bits (130), Expect = 5e-09
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 348 CDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
+ + + I + C R F+ +++ H H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 88.7 bits (221), Expect = 4e-22
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKH 389
L +H R+H +P+ C C + F + +HLTTH R HTGEKP+ CDICGR FA+S++ K+H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 390 RRT 392
+
Sbjct: 82 TKI 84
Score = 77.5 bits (192), Expect = 5e-18
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 341 RPYAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
RPYAC CD+ F + LT H RIHTG+KP+QC IC R F++S+ + H RT
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 69.0 bits (170), Expect = 6e-15
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 178 HHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
H +H ++ F C C ++F R HL H RTHTGEKP+AC +C ++FA+ +R +H K
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 60.2 bits (147), Expect = 7e-12
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
ER + C C++ F + L H R HTG+KP+ C +C + F++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 55.9 bits (136), Expect = 2e-10
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Query: 280 FKCDL--CGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGEYKKQ------ 329
+ C + C S L H+R+ H G + ++ C +C +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRI-HTG-------QKPFQ----CRICM---RNFSRSDH 49
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
L H R H +P+AC C + F + + H +IH +K
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 55.9 bits (136), Expect = 3e-10
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 129 YPC--DQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDK---VVTNLAAHHNEVH 183
Y C + CDR + SL H R H G K +C +C + +L H H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTG------QKPFQCRICMRNFSRSDHLTTHI-RTH 57
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
E+ F C C + F R K HT+ H +K
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 368 EKPYQCDI--CGRGFAQSNDMKKHRRT 392
E+PY C + C R F+QS + +H R
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI 28
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 87.9 bits (219), Expect = 9e-22
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
C+VCG+ K +L H R H ++PY C CD + L H RIH+ E+P++C IC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 377 GRGFAQSNDMKKHRRT 392
S+ + H R+
Sbjct: 71 PYASRNSSQLTVHLRS 86
Score = 79.4 bits (197), Expect = 1e-18
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
P+ C C K F +K+ L TH R HTG KPY+C C A S+ + KH R
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 75.2 bits (186), Expect = 4e-17
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGE---YKKQLLQHK 334
KC++CG S K L+ H+R H G YK C C L +H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRC-HTG-------VKPYK----CKTCDYAAADSSSLNKHL 56
Query: 335 RLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
R+H RP+ C C + + LT H R HTG+
Sbjct: 57 RIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 65.9 bits (162), Expect = 7e-14
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAH 185
+ C+ C + + K L H R H G K +C+ CD +L H +H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTG------VKPYKCKTCDYAAADSSSLNKHL-RIHSD 61
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
ER F C C + + L VH R+HTG+ +
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 64.8 bits (159), Expect = 2e-13
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 165 CELCDKVVT---NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL 221
CE+C K + L H H + + C C+ + L H R H+ E+P+ C +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 222 CDKRFAQISDRIKH 235
C S H
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 63.2 bits (155), Expect = 7e-13
Identities = 23/53 (43%), Positives = 23/53 (43%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
C C K F RK LK H R HTG KPY C CD A S KH
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 44.3 bits (106), Expect = 3e-06
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRRT 392
P++C++CG+ F++ + +K H R
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC 30
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 86.4 bits (215), Expect = 3e-21
Identities = 28/53 (52%), Positives = 39/53 (73%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
++P+ C C + F + +HLTTH R HTGEKP+ CDICGR FA+S++ K+HR
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 74.5 bits (184), Expect = 6e-17
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 320 CDVCGEYKKQ------LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
C +C + L H R H +P+AC C + F + + H I P
Sbjct: 6 CRICM---RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 374 DICGRGFAQSNDMKKHRR 391
D +++ ++
Sbjct: 62 DKVEELLSKNYHLENEVA 79
Score = 67.9 bits (167), Expect = 1e-14
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
F C C ++F R HL H RTHTGEKP+AC +C ++FA+ +R +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 59.4 bits (145), Expect = 1e-11
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 164 RCELCDKVVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL 221
+C +C + + H H E+ F C C + F R K H P
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDK 63
Query: 222 CDKRFAQISDRIKH 235
++ ++
Sbjct: 64 VEELLSKNYHLENE 77
Score = 54.0 bits (131), Expect = 9e-10
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKV---VTNLAAHHNEVHAH 185
+ C C R + L H R H G K C++C + H + + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG------EKPFACDICGRKFARSDERKRHRD-IQ-H 55
Query: 186 ERKFPCTFCEKSFKRKLHLKVHT---RTHTGEK 215
E+ + HL+ + GE+
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 54.0 bits (131), Expect = 1e-09
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGEYKKQ------LL 331
F+C +C S L H+R H G E + CD+CG ++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT-HTG-------EKPFA----CDICG---RKFARSDERK 48
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTH---YRIHTGEK 369
+H+ + + P + ++ K HL + GE+
Sbjct: 49 RHRDIQ-HILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 86.3 bits (215), Expect = 5e-21
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
C CG LL H+R H RPY C C K F++++HL H IH+ EKP++C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 377 GRGFAQSNDMKKHRRT 392
G+GF QS + H+
Sbjct: 80 GKGFCQSRTLAVHKTL 95
Score = 70.9 bits (175), Expect = 2e-15
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGE---YKKQLLQHK 334
F C CG + + L H R H E Y CD+C + + L H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERT-HTD-------ERPYT----CDICHKAFRRQDHLRDHR 65
Query: 335 RLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+H +P+ C +C K F + L H +H
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 65.5 bits (161), Expect = 1e-13
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 143 SLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAHERKFPCTFCEKSFK 199
R K C+ C + T NL H H ER + C C K+F+
Sbjct: 4 GSSGGRLPSKT------KKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFR 56
Query: 200 RKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
R+ HL+ H H+ EKP+ C C K F Q H
Sbjct: 57 RQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 62.1 bits (152), Expect = 2e-12
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAH 185
+ C C R + +L +H R H + C++C K +L H +H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTD------ERPYTCDICHKAFRRQDHLRDHRY-IHSK 70
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C C K F + L VH H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 85.6 bits (213), Expect = 5e-21
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 320 CDVCG---EYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
C +CG + L H +H RPY C C K F +K+ + H IHTGEKP++C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 377 GRGFAQSNDMKKHRRT 392
G+ F+QS+++ H R
Sbjct: 64 GKAFSQSSNLITHSRK 79
Score = 75.9 bits (188), Expect = 1e-17
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ C C K+FK+ + L+TH IH+ +PY C CG+ F Q +DMKKH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
Score = 65.1 bits (160), Expect = 9e-14
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 32/108 (29%)
Query: 128 TYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHER 187
++ C C ++++ +L H H R
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSD--------------------------------TR 28
Query: 188 KFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+PC +C K F +K +K HT HTGEKP+ C +C K F+Q S+ I H
Sbjct: 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 56.3 bits (137), Expect = 1e-10
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGE---YKKQLLQHK 334
F C +CG L H+ + H Y C CG+ K + +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSD-------TRPYP----CQYCGKRFHQKSDMKKHT 49
Query: 335 RLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTG 367
+H +P+ C C K F + ++L TH R HTG
Sbjct: 50 FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 85.2 bits (212), Expect = 5e-21
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKH 389
H + +PY C +C +F+ K +L +H +HTGEKPY+C+ICG F + ++K H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 390 RRT 392
R
Sbjct: 65 TRI 67
Score = 65.9 bits (162), Expect = 4e-14
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
CD C YK L HK +H +PY C C F + +L TH RIH+GEKPY
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 61.3 bits (150), Expect = 2e-12
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
HH+ + ++ + C C+ SF+ K +L H HTGEKPY C +C +F + ++ H
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 58.6 bits (143), Expect = 2e-11
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 357 HLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
H H + +KPY+CD C F ++ H+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV 39
Score = 53.6 bits (130), Expect = 1e-09
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 143 SLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAHERKFPCTFCEKSFK 199
+ H K +C+ C NLA+H VH E+ + C C F
Sbjct: 4 HHHHHSHMTHS------DKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFN 56
Query: 200 RKLHLKVHTRTHTGEKPY 217
R +LK HTR H+GEKPY
Sbjct: 57 RPANLKTHTRIHSGEKPY 74
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 84.5 bits (210), Expect = 1e-20
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGE--KPYQCDICGRGFAQSNDMK 387
R H +PY C C F + + H E + C C A+ +D+
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 388 KHRRTVH 394
H R H
Sbjct: 63 VHLRKQH 69
Score = 67.9 bits (167), Expect = 9e-15
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGE--KPYACYLCDKRFAQISDRIKHL 236
H+ E+ + C C F + +K+H E + C CD A+ SD HL
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 237 KSSH 240
+ H
Sbjct: 66 RKQH 69
Score = 64.1 bits (157), Expect = 2e-13
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 357 HLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ R H+GEKPY+C IC F QS MK H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQ 37
Score = 60.2 bits (147), Expect = 5e-12
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 33/103 (32%)
Query: 203 HLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHL 262
RTH+GEKPY CY+C RF Q + H+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGT--------------------------MKMHI 35
Query: 263 HDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVVHMG 305
H E + F C C +++ K L H+R H
Sbjct: 36 LQKHTENVAK-------FHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 57.1 bits (139), Expect = 6e-11
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 320 CDVCGE---YKKQLLQHKRLH--FPLRPYACTQCDKTFKKKNHLTTHYR-IHTGEKPY 371
C +C + H + + C CD +K+ L H R H+ P
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 53.7 bits (130), Expect = 1e-09
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 31/91 (34%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
Y C C + ++ +H + K
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHT------------------------------ENVAK 45
Query: 189 FPCTFCEKSFKRKLHLKVHTRT-HTGEKPYA 218
F C C+ RK L VH R H+ P +
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 86.1 bits (214), Expect = 2e-20
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQ--------LL 331
+ D C S+ L H+ H+ RK E+ C G ++ L+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERK---EFV----CHWGGCSRELRPFKAQYMLV 56
Query: 332 QHKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQC--DICGRGFAQSNDMK 387
H R H +P+ CT C K++ + +L TH R HTGEKPY C + C + F+ ++D
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 388 KHRRTVH 394
KH+ H
Sbjct: 117 KHQNRTH 123
Score = 78.4 bits (194), Expect = 1e-17
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 22/127 (17%)
Query: 129 YPCDQCDRTYQTKKSLYVH---RRAHLGIVYRYKSKTDRCELCDKVVT--------NLAA 177
D C + + +++ L H H K C L
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGE------RKEFVCHWGGCSRELRPFKAQYMLVV 57
Query: 178 HHNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRI 233
H H E+ CTF C KS+ R +LK H R+HTGEKPY C C K F+ SDR
Sbjct: 58 HM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 234 KHLKSSH 240
KH +H
Sbjct: 117 KHQNRTH 123
Score = 73.4 bits (181), Expect = 8e-16
Identities = 46/201 (22%), Positives = 64/201 (31%), Gaps = 67/201 (33%)
Query: 214 EKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTE 273
E C + F + H+ S H H E
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH------------------------IHGE----R 32
Query: 274 RERKLIFKCDLCGNILSSKH-----ILQEHVRVVHMGLSRKYHYE--YKPDGVCDV--CG 324
+E F C G + +L H+R H G E +K C C
Sbjct: 33 KE----FVCHWGGCSRELRPFKAQYMLVVHMRR-HTG-------EKPHK----CTFEGCR 76
Query: 325 EYKKQ------LLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTH-YRIHTGEKPYQCDI 375
K L H R H +PY C C K F + H R H+ EKPY C +
Sbjct: 77 ---KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Query: 376 --CGRGFAQSNDMKKHRRTVH 394
C + + + ++KH +TVH
Sbjct: 134 PGCTKRYTDPSSLRKHVKTVH 154
Score = 60.3 bits (147), Expect = 3e-11
Identities = 38/124 (30%), Positives = 50/124 (40%), Gaps = 22/124 (17%)
Query: 129 YPCDQCDRTYQTKK-----SLYVHRRAHLGIVYRYKSKTDRC--ELCDKVVT---NLAAH 178
+ C + + + L VH R H G K +C E C K + NL H
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTG------EKPHKCTFEGCRKSYSRLENLKTH 88
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVH-TRTHTGEKPYACYL--CDKRFAQISDRI 233
H E+ + C C K+F H RTH+ EKPY C L C KR+ S
Sbjct: 89 L-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 234 KHLK 237
KH+K
Sbjct: 148 KHVK 151
Score = 48.0 bits (115), Expect = 6e-07
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 8/58 (13%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVH---TRTHTGEKPYACYLCD-----KRFAQISDRIKH 235
E C + F + L H H K + C+ + F + H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Score = 46.0 bits (110), Expect = 3e-06
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 129 YPCD--QCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCE--LCDK---VVTNLAAHHNE 181
+ C C ++Y ++L H R+H G K CE C K ++ A H N
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTG------EKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 182 VHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTG 213
H++E+ + C C K + L+ H +T G
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 38.0 bits (89), Expect = 0.001
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 333 HKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTG 367
R H +PY C C K + + L H + G
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 84.9 bits (211), Expect = 3e-20
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGE---YKKQLLQHK 334
+C C SK+ L+ H R H G E ++ C CG+ K+ LL+H+
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRK-HTG-------EKPFE----CPKCGKCYFRKENLLEHE 55
Query: 335 RL---HFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
+ + + C+ C +TF+++ L H HTGE PY+C C + F Q D++ H
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 392 TVH 394
+H
Sbjct: 116 KLH 118
Score = 81.8 bits (203), Expect = 4e-19
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHH--NEVH 183
C C + + +K L VH R H G K C C K NL H N ++
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTG------EKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
E+ F C+ C+++F+R++ L++H +HTGE PY C C ++F Q D H+ H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 76.4 bits (189), Expect = 3e-17
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQIH 399
C C K F K +L H R HTGEKP++C CG+ + + ++ +H ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR---NCMN 61
Score = 71.0 bits (175), Expect = 3e-15
Identities = 34/164 (20%), Positives = 50/164 (30%), Gaps = 48/164 (29%)
Query: 211 HTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAI 270
+G C C K+F H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR--------------------------------K 29
Query: 271 KT-ERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---Y 326
T E+ F+C CG K L EH M + + C VC E
Sbjct: 30 HTGEKP----FECPKCGKCYFRKENLLEHEARNCM------NRSEQV-FTCSVCQETFRR 78
Query: 327 KKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTH-YRIHTGEK 369
+ +L H H PY C+ C + F +K L +H ++H+G
Sbjct: 79 RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 49.8 bits (120), Expect = 7e-08
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRA---HLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEV 182
+ C +C + Y K++L H + + C +C + L H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRS------EQVFTCSVCQETFRRRMELRLHM-VS 88
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVH-TRTHTGEK 215
H E + C+ C + F +K L+ H + H+G
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 43.3 bits (103), Expect = 1e-05
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+G +C C + F +K H R
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK 29
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 82.9 bits (206), Expect = 4e-20
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 329 QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKK 388
+ + R Y C +C K+F + L+ H R HTGEKPY+CD CG+ F Q + +
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 389 HRRT 392
H R
Sbjct: 65 HHRV 68
Score = 64.8 bits (159), Expect = 1e-13
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
CD CG+ + L +H+R H +PY C +C K F +++HL H+R+HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 63.2 bits (155), Expect = 5e-13
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 174 NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRI 233
+ R++ C C KSF L H RTHTGEKPY C C K F Q S I
Sbjct: 5 SSGRSE-WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 234 KH 235
H
Sbjct: 64 GH 65
Score = 50.1 bits (121), Expect = 2e-08
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 143 SLYVHRRAHLGIVYRYKSKTDRCELCDKV---VTNLAAHHNEVHAHERKFPCTFCEKSFK 199
S + +C+ C K ++L+ H H E+ + C C K+F
Sbjct: 5 SSGRSEWQQRE------RRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFI 57
Query: 200 RKLHLKVHTRTHTGEKPY 217
++ HL H R HTG P
Sbjct: 58 QRSHLIGHHRVHTGSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 82.5 bits (205), Expect = 5e-20
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKH 389
+H +PY C +C K F + + L H R+HTGEKPY+C CG+ F+Q++ + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 390 RRT 392
+R
Sbjct: 62 QRI 64
Score = 65.2 bits (160), Expect = 7e-14
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
C CG+ L+QH+R+H +PY C +C K F + + L H RIHT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 61.7 bits (151), Expect = 1e-12
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +H+ E+ + C C K+F R L H R HTGEKPY C C K F+Q S I H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 50.5 bits (122), Expect = 9e-09
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 144 LYVHRRAHLGIVYRYKSKTDRCELCDKV---VTNLAAHHNEVHAHERKFPCTFCEKSFKR 200
H G K C C K + L H VH E+ + C C K+F +
Sbjct: 2 SSGSSGIHSG------EKPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQ 54
Query: 201 KLHLKVHTRTHTGEKPYA 218
L H R HT
Sbjct: 55 NSGLINHQRIHTSGPSSG 72
Score = 43.6 bits (104), Expect = 3e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 204 LKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ H+GEKPY C C K F++ S ++H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 81.8 bits (203), Expect = 7e-20
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
R + C C + F ++ HL HYR HT EKPY C +C R F + + + +H + +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 67.1 bits (165), Expect = 1e-14
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
F C C ++F R+ HLK H R+HT EKPY C LC++ F + I+H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 52.9 bits (128), Expect = 1e-09
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 319 VCDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHY-RIHTGEK 369
VC+VC ++ L +H R H +PY C C++ F +++ L H +IH+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 40.9 bits (97), Expect = 2e-05
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 33/88 (37%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
+ C+ C R + ++ L H R+H E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN--------------------------------EKP 30
Query: 189 FPCTFCEKSFKRKLHLKVHT-RTHTGEK 215
+PC C ++F R+ L H + H+G
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 25.9 bits (58), Expect = 4.5
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 215 KPYACYLCDKRFAQISDRIKH 235
+ + C +C + FA+ +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 82.9 bits (206), Expect = 9e-20
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 327 KKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDM 386
K Q +H +H LRPY C C K FK K+HL H +IHTG KPY+C+IC + F +
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
Query: 387 KKHRRT 392
HR
Sbjct: 82 --HRHV 85
Score = 74.4 bits (184), Expect = 1e-16
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLLQHKRL 336
+ C CG + K H+ + H+GL +P G C VCG+ K L+ H ++
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSM-HLGL--------RPYG-CGVCGKKFKMKHHLVGHMKI 59
Query: 337 HFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQS 383
H ++PY C C K F ++ H + + K Y+ + ++
Sbjct: 60 HTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEA 104
Score = 62.5 bits (153), Expect = 2e-12
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVT---NLAAHHNEVHAH 185
YPC QC +++ K H HLG + C +C K +L H +H
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLG------LRPYGCGVCGKKFKMKHHLVGHMK-IHTG 62
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQIS 230
+ + C C K F + H + K Y ++ + S
Sbjct: 63 IKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEAS 105
Score = 61.7 bits (151), Expect = 4e-12
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
H +H R + C C K FK K HL H + HTG KPY C +C KRF +H
Sbjct: 26 DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 44.0 bits (105), Expect = 5e-06
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+G+K Y C CG+ F + +H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSM 31
Score = 37.8 bits (89), Expect = 7e-04
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
Y C C + ++ K L H + H GI K C +C K + H V + +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGI------KPYECNICAKRFMWRDSFHRHVTSCTKS 91
Query: 189 FPCTFCEKSFKRKLHL 204
+ E++
Sbjct: 92 YEAAKAEQNTTEASGP 107
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 82.5 bits (205), Expect = 1e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGE--KPYQCD 374
C++CG+ L +HK H +PY+C C FK+K+ ++ H R H G KPY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 375 ICGRGFAQSNDMKKHRRTVH 394
CG+GF++ + + H + VH
Sbjct: 70 SCGKGFSRPDHLNGHIKQVH 89
Score = 78.7 bits (195), Expect = 2e-18
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
AC C K F+ HL H H+GEKPY C +CG F + + M H R+
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 63.3 bits (155), Expect = 6e-13
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 164 RCELCDKV---VTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGE--KPYA 218
CE+C K+ V +L H H+ E+ + C C FKRK + H R+H G KPY
Sbjct: 9 ACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 219 CYLCDKRFAQISDRIKHLKSSH 240
C C K F++ H+K H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVH 89
Score = 60.2 bits (147), Expect = 8e-12
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCGE---YKKQLLQHK 334
C++CG I + L H H G E Y C VCG K ++ H
Sbjct: 8 VACEICGKIFRDVYHLNRHKLS-HSG-------EKPYS----CPVCGLRFKRKDRMSYHV 55
Query: 335 RLHF--PLRPYACTQCDKTFKKKNHLTTHY-RIHTGEK 369
R H +PY C C K F + +HL H ++H+G
Sbjct: 56 RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 59.8 bits (146), Expect = 1e-11
Identities = 30/123 (24%), Positives = 40/123 (32%), Gaps = 33/123 (26%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNF 242
+ C C K F+ HL H +H+GEKPY+C +C RF + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH------- 54
Query: 243 DFESVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVV 302
HD K + C CG S L H++ V
Sbjct: 55 -----------------VRSHDG--SVGKP-------YICQSCGKGFSRPDHLNGHIKQV 88
Query: 303 HMG 305
H G
Sbjct: 89 HSG 91
Score = 44.4 bits (106), Expect = 3e-06
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+G C+ICG+ F + +H+ +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS 29
Score = 38.2 bits (90), Expect = 4e-04
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 31/88 (35%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
Y C C ++ K + H R+H G + +
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDG------------------------------SVGKP 65
Query: 189 FPCTFCEKSFKRKLHLKVHT-RTHTGEK 215
+ C C K F R HL H + H+G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 83.0 bits (206), Expect = 1e-19
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 329 QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDM 386
QL +H+R H ++P+ C C + F + +HL TH R HTGEKP+ C C + FA+S+++
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Query: 387 KKHRRT 392
+H
Sbjct: 113 VRHHNM 118
Score = 81.4 bits (202), Expect = 5e-19
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 330 LLQHKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMK 387
L H R H +PY C C++ F + + L H R HTG KP+QC C R F++S+ +K
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 388 KHRRT 392
H RT
Sbjct: 84 THTRT 88
Score = 72.9 bits (180), Expect = 5e-16
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 129 YPCDQ--CDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCEL--CDK---VVTNLAAHHNE 181
+ C C++ Y L +H R H G K +C+ C++ L H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTG------EKPYQCDFKDCERRFSRSDQLKRHQR- 59
Query: 182 VHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKH 235
H + F C C++ F R HLK HTRTHTGEKP++C C K+FA+ + ++H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 45.2 bits (108), Expect = 2e-06
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 66/169 (39%)
Query: 212 TGEKPYAC--YLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEA 269
+ ++P+ C C+KR+ ++S H +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-------------------------------- 29
Query: 270 IKT-ERERKLIFKCDL--CGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCG 324
T E+ ++CD C S L+ H R H G ++ C C
Sbjct: 30 KHTGEKP----YQCDFKDCERRFSRSDQLKRHQRR-HTG-------VKPFQ----CKTCQ 73
Query: 325 EYKKQ------LLQHKRLHFPLRPYAC--TQCDKTFKKKNHLTTHYRIH 365
++ L H R H +P++C C K F + + L H+ +H
Sbjct: 74 ---RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 40.2 bits (95), Expect = 1e-04
Identities = 5/29 (17%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 366 TGEKPYQCD--ICGRGFAQSNDMKKHRRT 392
+ ++P+ C C + + + + ++ H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK 30
Score = 40.2 bits (95), Expect = 1e-04
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 129 YPCD--QCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDK---VVTNLAAHHNEVH 183
Y CD C+R + L H+R H G K +C+ C + +L H H
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTG------VKPFQCKTCQRKFSRSDHLKTHT-RTH 89
Query: 184 AHERKFPCTF--CEKSFKRKLHLKVHTRTH 211
E+ F C + C+K F R L H H
Sbjct: 90 TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 79.9 bits (198), Expect = 6e-19
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGE----KPYQCDICGRGFAQSND 385
R H +PYAC+ CDKTF++K L H++ + + C CG+ F + N
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 386 MKKHRRT 392
M +H
Sbjct: 63 MARHADN 69
Score = 76.0 bits (188), Expect = 2e-17
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 320 CDVCGE---YKKQLLQHKRLH----FPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQ 372
C C + K+ L H + + F + C++C KTF ++N + H G +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 373 CDICGRGF 380
+ G
Sbjct: 78 GENSGPSS 85
Score = 62.9 bits (154), Expect = 7e-13
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 28/98 (28%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
Y C CD+T++ K+ L +H + + + +
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA---------------------------- 47
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRF 226
F C+ C K+F R+ + H G
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 55.6 bits (135), Expect = 3e-10
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 357 HLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ R HTGEKPY C C + F Q + H +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR 37
Score = 52.9 bits (128), Expect = 2e-09
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHT----GEKPYACYLCDKRFAQISDR 232
H E+ + C+ C+K+F++K L +H + + + C C K F + +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 233 IKH 235
+H
Sbjct: 64 ARH 66
Score = 50.2 bits (121), Expect = 2e-08
Identities = 18/35 (51%), Positives = 18/35 (51%)
Query: 203 HLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
RTHTGEKPYAC CDK F Q H K
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 79.5 bits (197), Expect = 6e-19
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
P C++C + K L H RIH ++P++C+ C Q +++ KH +
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 67.1 bits (165), Expect = 2e-14
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 182 VHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
+ C+ C S K L++H R H ++P+ C C Q S+ KH+K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 63.3 bits (155), Expect = 4e-13
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
C C K L H+R+H RP+ C C K+ ++L+ H + G+
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 48.6 bits (117), Expect = 5e-08
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 32/92 (34%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
C +C + +K +L +H R H +R
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCT--------------------------------DRP 37
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACY 220
F C +C K+ +L H + G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 45.6 bits (109), Expect = 6e-07
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ P +C C + ++ H R
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI 31
Score = 43.3 bits (103), Expect = 4e-06
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 209 RTHTGEKPYACYLCDKRFAQISDRIKH 235
+ + P C C + + H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 78.4 bits (194), Expect = 1e-18
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 334 KRLHFPLRPYACTQCDKTFKKKNHLTTHYRI--HTGEKPYQCDICGRGFAQSNDMKKHRR 391
+ Y C C + + ++ HY K Y C C + F + ++M H +
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 392 TVHK 395
+HK
Sbjct: 62 IIHK 65
Score = 61.8 bits (151), Expect = 9e-13
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRT--HTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
E + C C + + + H T K Y C C K F + + H+K H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 46.8 bits (112), Expect = 2e-07
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 164 RCELCDKVVT---NLAAHH-NEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTG 213
RC++C +V T N H+ + + +PC FC K F RK ++ H +
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 44.9 bits (107), Expect = 1e-06
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 320 CDVCGEYKKQ---LLQHKR--LHFPLRPYACTQCDKTFKKKNHLTTHYRIHTG 367
C VC +H ++ Y C C K F +K+++T H +I
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 44.1 bits (105), Expect = 2e-06
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 33/95 (34%)
Query: 209 RTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPE 268
T GE Y C +C + + IS+ +H +SH
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH---------------------------- 34
Query: 269 AIKTERERKLIFKCDLCGNILSSKHILQEHVRVVH 303
+ + C C + K + HV+++H
Sbjct: 35 ---KRNVKV--YPCPFCFKEFTRKDNMTAHVKIIH 64
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 79.9 bits (198), Expect = 2e-18
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 20/122 (16%)
Query: 280 FKCDL--CGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGE---YKKQLLQHK 334
C C + +++H+ H + VC CG+ +L +H+
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHT---------HGP-RVH-VCAECGKAFVESSKLKRHQ 54
Query: 335 RLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQSNDMKKHR 390
+H +P+ CT C K F +L TH RIHTG++PY C C + FAQS ++K H
Sbjct: 55 LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Query: 391 RT 392
T
Sbjct: 115 LT 116
Score = 65.2 bits (160), Expect = 3e-13
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 128 TYPCDQ--CDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKV---VTNLAAHHNEV 182
T C C + ++ ++ H H V+ C C K + L H V
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV-------CAECGKAFVESSKLKRHQ-LV 56
Query: 183 HAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKH 235
H E+ F CTF C K F +L+ H R HTG++PY C C+K+FAQ ++ H
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 60.2 bits (147), Expect = 2e-11
Identities = 38/170 (22%), Positives = 48/170 (28%), Gaps = 59/170 (34%)
Query: 214 EKPYACYL--CDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIK 271
+ AC C K F S KH H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKH------------------------LHTHGPRV---- 34
Query: 272 TERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDV--CGE-- 325
C CG L+ H V H G E ++ C CG+
Sbjct: 35 --------HVCAECGKAFVESSKLKRHQLV-HTG-------EKPFQ----CTFEGCGKRF 74
Query: 326 -YKKQLLQHKRLHFPLRPYAC--TQCDKTFKKKNHLTTHYRIHTGEKPYQ 372
L H R+H RPY C C+K F + +L +H H K Q
Sbjct: 75 SLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 53.3 bits (129), Expect = 4e-09
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCEL--CDKVVT---NLAAHHNEVH 183
+ C +C + + L H+ H G K +C C K + NL H +H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTG------EKPFQCTFEGCGKRFSLDFNLRTHV-RIH 87
Query: 184 AHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPY 217
+R + C F C K F + +LK H TH K
Sbjct: 88 TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 34.8 bits (81), Expect = 0.011
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 368 EKPYQCDI--CGRGFAQSNDMKKHRRT 392
+ C C + F ++ M+KH T
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHT 29
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 78.7 bits (195), Expect = 2e-18
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 320 CDVCG-EYKK--QLLQHKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCD 374
CG Y K L H R H +PY C C F + + LT HYR HTG +P+QC
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 375 ICGRGFAQSNDMKKHRRT 392
C R F++S+ + H +
Sbjct: 70 KCDRAFSRSDHLALHMKR 87
Score = 66.0 bits (162), Expect = 6e-14
Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 34/111 (30%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
C +TY L H R H G E+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTG--------------------------------EKP 35
Query: 189 FPCT--FCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
+ C C F R L H R HTG +P+ C CD+ F++ H+K
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 62.2 bits (152), Expect = 2e-12
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 185 HERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIKH 235
C + C K++ + HLK H RTHTGEKPY C C +FA+ + +H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 46.4 bits (111), Expect = 4e-07
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 273 ERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKK---- 328
+R CG + L+ H+R H G + YH CD G K
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTG-EKPYH--------CDWDGCGWKFARS 50
Query: 329 -QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIH 365
+L +H R H RP+ C +CD+ F + +HL H + H
Sbjct: 51 DELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 35.6 bits (83), Expect = 0.004
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRRT 392
T CG+ + +S+ +K H RT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT 29
Score = 28.3 bits (64), Expect = 1.2
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 211 HTGEKPYACYLCDKRFAQISDRIKHLKS 238
T C K + + S HLK+
Sbjct: 2 RTATHTCDYAGCGKTYTKSS----HLKA 25
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 78.2 bits (193), Expect = 2e-18
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHT---GEKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
C C T ++K L H R H + C+ CG+ F + + + HR H A
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 398 IHAVEDK 404
+ A ++
Sbjct: 66 LLAPQES 72
Score = 67.0 bits (164), Expect = 2e-14
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHT---GEKPYACYLCDKRFAQISDRIKHLKSSH 240
C C + ++K L H R H + C C KRF + H SH
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 55.1 bits (133), Expect = 4e-10
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPL---RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
C++CG K L H+R H + C C K F+K + + H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 50.9 bits (122), Expect = 1e-08
Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 29/91 (31%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
C+ C T + K SL H+R H A +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKH---------------------AETVA--------ALR 38
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
FPC FC K F++ + H A
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 49.7 bits (119), Expect = 3e-08
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+G QC+ICG Q + H+R
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK 29
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/93 (16%), Positives = 21/93 (22%), Gaps = 32/93 (34%)
Query: 211 HTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAI 270
+G C +C Q + H + KH
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR----------------------KH--------- 30
Query: 271 KTERERKLIFKCDLCGNILSSKHILQEHVRVVH 303
E L F C+ CG + H H
Sbjct: 31 -AETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 34.3 bits (79), Expect = 0.007
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCG---EYKKQLLQHKRL 336
+C++CG K L H R H + C+ CG E + H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFP------CEFCGKRFEKPDSVAAHRSK 60
Query: 337 HFPLRPYACTQCDK 350
P A +
Sbjct: 61 SHPALLLAPQESSG 74
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 77.3 bits (191), Expect = 9e-18
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 330 LLQHKRLHFPLRPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMK 387
L H R H +PY CT CD F + + LT HYR HTG KP+QC +C R F++S+ +
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 388 KHRRT 392
H +
Sbjct: 93 LHMKR 97
Score = 65.3 bits (160), Expect = 2e-13
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 159 KSKTDRCEL--CDKVVT---NLAAHHNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTH 211
K + C+ C KV T +L AH H E+ + CT+ C+ F R L H R H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 212 TGEKPYACYLCDKRFAQISDRIKHLK 237
TG KP+ C +C++ F++ H+K
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 46.5 bits (111), Expect = 7e-07
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 128 TYPCD--QCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRC--ELCDKVVTNLA--AHHNE 181
+ CD C + Y L H R H G K +C E CD H
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTG------EKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 182 VHAHERKFPCTFCEKSFKRKLHLKVHTRTHT 212
H + F C C +SF R HL +H + H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 45.7 bits (109), Expect = 1e-06
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 329 QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHT 366
+L +H R H +P+ C C+++F + +HL H + H
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 36.5 bits (85), Expect = 0.002
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 351 TFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ RIH + P C + + +S+ +K H RT
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT 39
Score = 30.7 bits (70), Expect = 0.19
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 197 SFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
S R H + P C K + + S HLK+
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSS----HLKA 35
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 72.3 bits (178), Expect = 3e-16
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 341 RPYACT--QCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
RPYAC CD+ F + + LT H RIHTG+KP+QC IC R F++S+ + H RT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 63.1 bits (154), Expect = 5e-13
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 179 HNEVHAHERKFPCT--FCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHL 236
N V R + C C++ F R L H R HTG+KP+ C +C + F++ H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 237 K 237
+
Sbjct: 70 R 70
Score = 45.0 bits (107), Expect = 1e-06
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 329 QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHT 366
+L +H R+H +P+ C C + F + +HLTTH R HT
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 42.3 bits (100), Expect = 9e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHT 212
H +H ++ F C C ++F R HL H RTHT
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 29.6 bits (67), Expect = 0.31
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 39/105 (37%)
Query: 198 FKRKLHLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLT 255
+L + +PYAC + CD+RF++ + LT
Sbjct: 3 PHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDE----------------------LT 38
Query: 256 RYLNKHLHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVR 300
R++ H ++ F+C +C S L H+R
Sbjct: 39 RHIRIH-----------TGQKP--FQCRICMRNFSRSDHLTTHIR 70
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 69.7 bits (171), Expect = 2e-15
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 327 KKQLLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDI--CGRGFAQ 382
+ +R + C+ C KT+ K +HL H R HTGEKP+ C C R FA+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 383 SNDMKKHRRT 392
S+++ +HRRT
Sbjct: 62 SDELSRHRRT 71
Score = 62.8 bits (153), Expect = 5e-13
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIK 234
+ R C+ C K++ + HLK HTRTHTGEKP++C C++RFA+ + +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 235 HLKS 238
H ++
Sbjct: 68 HRRT 71
Score = 33.9 bits (78), Expect = 0.009
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTH 211
H H E+ F C++ CE+ F R L H RTH
Sbjct: 38 HTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.1 bits (76), Expect = 0.015
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 333 HKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIH 365
H R H +P++C+ C++ F + + L+ H R H
Sbjct: 38 HTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.3 bits (66), Expect = 0.43
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 203 HLKVHTRTHTGEKPYACYL--CDKRFAQISDRIKHLKS 238
+ + + C C K + + S HLK+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSS----HLKA 37
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 69.6 bits (171), Expect = 3e-15
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 329 QLLQHKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDM 386
QL H+ H PY C CDK F + L H ++H G + D C
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 77
Query: 387 KKHRRTVH 394
KH H
Sbjct: 78 LKHVAECH 85
Score = 59.2 bits (144), Expect = 1e-11
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 165 CELCDKVVT---NLAAHHNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC 219
E C K L H H + + C C+K F LK H + H G
Sbjct: 6 FENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 220 YLCDKRFAQISDRIKHLKSSH 240
C + +KH+ H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 58.0 bits (141), Expect = 4e-11
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 189 FPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC--YLCDKRFAQISDRIKH 235
+ C F C K+FK+ LKVH +HT + PY C CDKRF+ S +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 29.1 bits (66), Expect = 0.66
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 129 YPCDQ--CDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVH 183
Y C CD+ + L H + H G K D C K T H E H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 69.1 bits (170), Expect = 3e-15
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 341 RPYACT--QCDKTFKKKNHLTTHYRI-HTGEKPYQCD--ICGRGFAQSNDMKKHRRT 392
C C + F + +L H + H +K + C CG+ F +K+H +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 67.6 bits (166), Expect = 1e-14
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 330 LLQHKRL-HFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGF 380
L HK+ H + ++C + C K+F K HL H ++H+ + Y C+ G
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 66.4 bits (163), Expect = 3e-14
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 183 HAHERKFPCTF--CEKSFKRKLHLKVHTR-THTGEKPYAC--YLCDKRFAQISDRIKH 235
+ PC F C + F + +L H + H +K ++C C K F +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Score = 65.6 bits (161), Expect = 7e-14
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 174 NLAAHHNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRF 226
L H H H++ F C C KSF K HLK H + H+ + Y C
Sbjct: 24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 45.2 bits (108), Expect = 1e-06
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 365 HTGEKPYQCDI--CGRGFAQSNDMKKHRRTVH 394
+G CD CGR F+ + H++ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 38.3 bits (90), Expect = 3e-04
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 211 HTGEKPYACYL--CDKRFAQISDRIKHLKSSH 240
+G C C + F+ H K H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 68.4 bits (168), Expect = 4e-15
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHY-RIHTGEKPYQCDICGRGFAQ 382
+PY C C K F + +HL H ++HT E+P++C + G +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 59.1 bits (144), Expect = 7e-12
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHT-RTHTGEKPYACYLCDKRFAQ 228
+ + + C C K F R HL H + HT E+P+ C + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 50.3 bits (121), Expect = 9e-09
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
+ + KPY C CG+GF++ + + H + VH
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
+ + KPY C C K F++ H+K H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 27.2 bits (61), Expect = 1.4
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 164 RCELCDKV---VTNLAAHHNEVHAHERKFPCTFCEKSF 198
C+ C K +L H +VH ER C
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 26.8 bits (60), Expect = 1.8
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 13/47 (27%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYE--YKPDGVCDVCG 324
+ C CG S L H++ VH E +K C V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTS-------ERPHK----CQVWV 48
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C+ C K+F KK+ L H RIHTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C+ C KSF +K L VH R HTGE P
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ F + + + H+R
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI 34
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F + S H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 26.0 bits (58), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C +++ K L+VH+R H G
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTG 37
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C C K+F+ + LT H RIHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C KSF+ L VH R HTGEKP
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+CD+C + F + + H+R
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C +C K F S H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 25.9 bits (58), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y CD C ++++ SL VH+R H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCD 374
+PY+C C K F HL H R+HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F HL H R HT E
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
TGEKPY C++CG+ F S + +H R
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY+C +C K F + +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F +K +LT H RIHTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F +K +L H R HTGEKP
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ FAQ ++ +H+R
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI 34
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K FAQ ++ +H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F+ ++LTTH IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F+ +L H HTGEKP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F +++ H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C++C K F + HL H RIHTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 51.3 bits (124), Expect = 3e-09
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C+ C K+F R HL H R HTG +P
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKPY+C CG+ F + + +HRR
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI 34
Score = 40.9 bits (97), Expect = 1e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKPY C C K F + + +H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 64.9 bits (159), Expect = 6e-14
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
RPY C +C K FK K+ L H R HTGEKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+R + C C K+FK K L H R+HTGEKP
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 7e-09
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG++PY+C CG+ F + + HRR+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS 34
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG++PY C C K F S I H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + ++TK SL HRR+H G
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTG 37
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 6e-14
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C C K F LT H R+H+GEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F L H R H+GEKP
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+CD+C + F+ + +H+R
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C +C K F+ + +H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 24.8 bits (55), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y CD C + + SL H+R H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C+ C K+F KK+ L H +IHTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C+ C KSF +K L VH + HTGEKP
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C ICG+ F + + + H++
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C +C K F + S H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 26.3 bits (59), Expect = 2.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C +++ K L+VH++ H G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
R Y C++C K F +K+ L+ H RIH GEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 178 HHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
ER + C+ C K+F +K L +H R H GEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGE+ Y+C CG+ F Q + + H+R
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI 34
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGE+ Y C C K F Q S H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + + K +L +H+R H G
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRG 37
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 7e-14
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C C K F+ +HL H+ +H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F+ HL H H+GE+P
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
TGEKPY+C +CG+ F S+ + +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C +C K F S ++H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 8e-14
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F+ ++L+ H RIHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F+ +L H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F ++ + +H+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI 34
Score = 41.7 bits (99), Expect = 8e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 8e-14
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C QC K F ++ LTTH IHTG+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F + L H HTG+KP
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F+ + + H+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI 34
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F+ S H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 25.2 bits (56), Expect = 6.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C+QC + + + SL H+ H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.0 bits (157), Expect = 9e-14
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F++ +HL H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 3e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F+R HL H HTGEKP
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ F +++ + +H+
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34
Score = 41.7 bits (99), Expect = 9e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C+ C K F + S +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 9e-14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C +C K F + +HL +H R+HTGEKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ F C C K F + HL H R HTGEKP
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKP+QC+ CG+ F Q++ + H+R
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV 34
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKP+ C C KRF Q S H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 9e-14
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K+F +K+HL H RIHTGEKP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C KSF +K HL H R HTGEKP
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY C+ CG+ F Q + + +HRR
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI 34
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F Q S +H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 64.1 bits (157), Expect = 9e-14
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ Y C +C K F + + L+ H +IHTGEKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+++ C C K F R L H + HTGEKP
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
+ TGEK Y+C+ CG+ F++++ + +H++
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEK Y C C K F++ S +H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 1e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
R Y C++C K F +K+ L H RIHTGEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 54.0 bits (131), Expect = 3e-10
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
ER + C+ C K+F RK L +H R HTGEKP
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGE+ Y+C CG+ FA+ + + H+R
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI 34
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGE+ Y C C K FA+ S I H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 1e-13
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + +HLT H+RIHTGEKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 51.3 bits (124), Expect = 4e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C C K F + HL H R HTGEKP
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKPY+C+ CG+ F Q++ + H R
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKPY C C K F Q S H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 1e-13
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
PY C +C K F +K L +H R H GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E + C C K+F RK L H RTH GEKP
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGE PY+C CG+ F++ + H+RT
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT 34
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGE PY C+ C K F++ I H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 24.8 bits (55), Expect = 9.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + + K L H+R H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAG 37
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ Y C C K F + +HL TH R+HTGEKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ GEK Y+CD+CG+ F+QS+ ++ H+R
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV 34
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F + HL+ H R HTGEKP
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 9e-07
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ GEK Y C +C K F+Q S H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 25.2 bits (56), Expect = 5.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y CD C + + L H+R H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ + CT+C K F +K+ L+ H +IHTGEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 4e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ F CT C K+F RK L +H + HTGEKP
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG K ++C CG+ F + + + H++
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG K + C C K F + S H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 24.8 bits (55), Expect = 9.9
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +C + + K +L +H++ H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K + K +L H ++HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K + K +L +H + HTGE+P
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+G+ ++ H++
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 41.7 bits (99), Expect = 7e-06
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K + + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + Y +K +L +H++ H G
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTG 37
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C+ C K F + L+ H RIH+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C+ C K+F + L VH R H+G+KP
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
TGEKPY+C +CG+ F+ + H+R
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI 34
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C +C K F+ H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 25.9 bits (58), Expect = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C + + ++SL VH+R H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C +C K F++ HL +H RIHTGEKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ F C C K+F++ +HL H R HTGEKP
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 3e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKP++C CG+ F Q+ + H R
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
Score = 41.7 bits (99), Expect = 8e-06
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKP+ C C K F Q H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ + C +C KTF + + LT H RIHTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
A ++ F C C+K+F + L VH R HTGEKP
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ G+K ++C+ C + F QS+ + H+R
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ G+K + C C K F Q S H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C++C +T+ SL VH+R H G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + +HL H IHTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 9e-09
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG+KPY+C+ CG+ F Q++ + +HR
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34
Score = 49.8 bits (120), Expect = 9e-09
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
++ + C C K F + HL H HTGEKP
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG+KPY C C K F Q S +H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + +HL H RIHTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F + HL H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F Q++ + H+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI 34
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F Q S H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 2e-13
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C+ C K F +K+ L H + HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 53.3 bits (129), Expect = 7e-10
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C+ C K+F RK L +H ++HTGE+
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ F + + + H+++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F + S H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 26.3 bits (59), Expect = 2.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C + + K L++H+++H G
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTG 37
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 63.3 bits (155), Expect = 2e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ CT C K+F+ K +L TH RIHTGEK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
++ F CT C KSF+ K +L H R HTGEK
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 49.1 bits (118), Expect = 2e-08
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG+KP++C CG+ F ++ H+R
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI 34
Score = 42.1 bits (100), Expect = 6e-06
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG+KP+ C C K F + + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 25.6 bits (57), Expect = 3.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C C ++++ K +L H+R H G
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTG 37
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 2e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
RPY CT C K F +++L H +IHTGEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 51.3 bits (124), Expect = 4e-09
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGE+PY C +CG+ F +++ KH++
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
ER + CT C K+F + +L H + HTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 8e-07
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGE+PY C +C K F S+ IKH
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 24.8 bits (55), Expect = 9.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C + + + +L H++ H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C KTF +K+ L+ H R HTGEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 7e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 178 HHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C C K+F +K L H RTHTGEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKPY C+ CG+ F+Q + + H+RT
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKPY C C K F+Q S H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 26.0 bits (58), Expect = 3.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C +T+ K L H+R H G
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTG 37
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
++PY C+QC KTF K+ L H R HTG KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ + C+ C K+F K L VH R+HTG KP
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG KPY C C + F+ + + H+R+
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS 34
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG KPY C C K F+ S I H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C QC +T+ K L VH+R+H G
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTG 37
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C C K F +K HL H + HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F +K HL H +THTGEKP
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C +C + F Q + +H++T
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT 34
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C +C K F Q + +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 24.8 bits (55), Expect = 9.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C + + K L H++ H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C C K F L H RIHTGEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKPY CD CG+ F S ++ +H+R
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI 34
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C +C K+F L H R HTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKPY C C K F ++ ++H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C+ C K+F K+ L H + HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C+ C KSF K L++H + HTGE+
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ F + ++ H++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.3 bits (59), Expect = 2.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C +++ K L +H++ H G
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTG 37
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + HL H R+HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F + HL H R HTGEKP
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ F+Q+ + +H+R
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV 34
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F+Q + I+H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C C K F L H RIHTGEKP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C C K+F + L H R HTGEKP
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP+ C CG+ F+ + +HRR
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 41.3 bits (98), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP+ C C K F+ +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCD 374
+P+ C C K+F ++ L H +HT EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C C KSF + L H+ HT EKP
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 52.1 bits (126), Expect = 2e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP++CDICG+ F + + +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP+ C +C K F S +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 3e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
RP+ C +C K+F + HL H RIHTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 7e-10
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
ER C C KSF + HL H R HTGEKP
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGE+P++C+ CG+ F QS + +H+R
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI 34
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGE+P+ C C K F Q + I+H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.0 bits (154), Expect = 3e-13
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C++C K F K++L H R H+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
A E+ + C+ C K+F K +L +H RTH+GEKP
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 49.9 bits (120), Expect = 9e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ GEKPY C CG+ F+ + + H RT
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ GEKPY C C K F+ S I H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 25.6 bits (57), Expect = 4.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + + +K L +H R H G
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSG 37
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 3e-13
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C +C K++ ++ HLT H R+HTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C C KS+ +++HL H R HTGEKP
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP++C CG+ + Q + +H+R
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV 34
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP+ C C K + Q +H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 3e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
++PY C +C K F + LTTH IHTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ + C C K+F L H HTGEKP
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG KPY C+ CG+ F+ + + H+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI 34
Score = 41.7 bits (99), Expect = 8e-06
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG KPY C C K F+ S H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 3e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + +HL H IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F + HL H HTGEKP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F Q++ + +HR
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI 34
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F Q S +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 3e-13
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F+ ++ L H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F+ + L +H TH+GEKP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F + + H+ T
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT 34
Score = 41.8 bits (99), Expect = 8e-06
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 26.3 bits (59), Expect = 2.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + ++ + SL +H+ H G
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSG 37
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCD 374
+PY C +C K +K++ L H R+HTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C C K +KR+L L H R HTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKPY+C CG+G+ + D+ H+R
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKPY C C K + + D H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 24.8 bits (55), Expect = 7.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + Y+ + L H+R H G
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTG 37
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C +C K+F + L TH RIHTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C C KSF L H R HTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP++C CG+ F+ S+ + H+R
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI 34
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP+ C C K F+ S H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.5 bits (153), Expect = 4e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
++PY C +C K F+ K++L H R HTGE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ + C C K+F+ K +L +HTRTHTGE +
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG KPY C+ CG+ F + + H RT
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG KPY C C K F S I H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 24.8 bits (55), Expect = 7.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + +++K L +H R H G
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTG 37
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 4e-13
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C +C K+F + L H RIHTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ C C KSF L VH R HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP++C CG+ F+ ++ + H+R
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI 34
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP+ C C K F+ S I H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 4e-13
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C C K + ++ +L H R+H GEK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 52.9 bits (128), Expect = 9e-10
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C C K + R+L+L +H R H GEK
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 50.2 bits (121), Expect = 9e-09
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ + EKPY+C+ CG+G+ + ++ H+R
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 42.5 bits (101), Expect = 5e-06
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ + EKPY C C K + + + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 24.8 bits (55), Expect = 7.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C+ C + Y + +L +H+R H+G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 4e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + + L H RIHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 178 HHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F + L H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F+Q++ + +H+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F+Q S +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 62.5 bits (153), Expect = 4e-13
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C +C K F +++ L H+++HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C C K F R+ L VH + HTGEKP
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP++C CG+GF++ + + H +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 42.1 bits (100), Expect = 6e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP+ C C K F++ S H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 25.2 bits (56), Expect = 5.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +C + + + +L VH + H G
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTG 37
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ PY C+QC+K+F K L H R+HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 54.9 bits (133), Expect = 2e-10
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
A + C+ CEKSF KL L VH R HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ G PY+C C + F+ + H+R
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
Score = 42.1 bits (100), Expect = 6e-06
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ G PY C C+K F+ + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 27.5 bits (62), Expect = 0.88
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C QC++++ K L VH+R H
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTR 37
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + +HL H R+HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 52.9 bits (128), Expect = 1e-09
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F + HL H R HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F Q++ + +HRR
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV 34
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F Q S +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + L TH+ +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+GF D+ H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34
Score = 50.2 bits (121), Expect = 8e-09
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F + L H HTGEKP
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F D H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 4e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + +HL H IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K F + HL H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ CG+ F Q++ + +HR
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI 34
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F Q S ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 5e-13
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + L H RIHTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F L+ H R HTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY C+ CG+ F + +++H+R
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S +H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.1 bits (152), Expect = 5e-13
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F K++L H R HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C+K+F K +L VH RTHTGE +
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C+ C + F +++ H+RT
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRT 34
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 206 VHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S+ + H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + + TK +L VH+R H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTG 37
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 62.2 bits (152), Expect = 5e-13
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K+F+ + L H R+H+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY C CG+ F ++ + KH+R
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV 34
Score = 49.9 bits (120), Expect = 1e-08
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C KSF+ L H R H+GEKP
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S +KH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 24.5 bits (54), Expect = 9.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C ++++ L H+R H G
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSG 37
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 5e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
P+ C++C K F K +L H +IHTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 52.9 bits (128), Expect = 9e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E F C+ C K F K +L +H + HTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGE P+ C CG+ F ++ H++
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34
Score = 44.0 bits (105), Expect = 1e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGE P+ C C K F ++ I H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 25.1 bits (56), Expect = 6.6
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +C + + K +L +H++ H G
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTG 37
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 5e-13
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C +C K F + + L +H R+HTGEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ F C C K F + L H R HTGEKP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKP++C+ CG+ F Q++ + H+R
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKP+ C C KRF Q S H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 6e-13
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + + L H R+HTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 178 HHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ + C C K+F + L H R HTGEKP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TG KPYQC+ CG+ F+Q++ + +H+R
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV 34
Score = 42.5 bits (101), Expect = 3e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TG KPY C C K F+Q S +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 7e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F +++L TH +IHTGEKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 3e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F + +L H + HTGEKP
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 9e-09
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ F +++ H++
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S+ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 24.8 bits (55), Expect = 9.7
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C + + + +L+ H++ H G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 7e-13
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ Y C +C K+F + L H R+H+GEKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C KSF R L H R H+GEKP
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEK Y C CG+ F+++ + KH R
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEK Y C C K F++ +KH
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 7e-13
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F +++L H +IHT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 51.0 bits (123), Expect = 5e-09
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F + +L H + HT +KP
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY C CG+ F +++ KH++
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S+ IKH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 7e-13
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
RP+ C +C K F +++HL H R+H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ ER F C C K F R+ HL H R H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GE+P++C+ CG+GF + + + H R
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GE+P+ C C K F + S H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 7e-13
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
RPY C +C K F + +HL H + H EK
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 55.6 bits (135), Expect = 1e-10
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ ER + C C K+F R HL H + H EK
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 46.7 bits (112), Expect = 1e-07
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GE+PY C+ CG+ F + + + +H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
Score = 41.7 bits (99), Expect = 8e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
+ +GE+PY C C K F + S I+HLK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 25.2 bits (56), Expect = 5.8
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 320 CDVCGE---YKKQLLQHKRLHFPLRPYACT 346
C+ CG+ L++H + HF + +
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.3 bits (150), Expect = 8e-13
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C++C K F K++L H R HTGEKP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 53.6 bits (130), Expect = 4e-10
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F C+ C+K+F K +L VH RTHTGEKP
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP++C C + F +++ H+RT
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT 34
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP+ C C K F S+ I H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 25.5 bits (57), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +C + + TK +L VH+R H G
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTG 37
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C++C K+F LT H+ HT EKP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 52.2 bits (126), Expect = 2e-09
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C+ C KSF L H THT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ GEKPYQC CG+ F+ S + +H T
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ GEKPY C C K F+ +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.7 bits (148), Expect = 2e-12
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F + T H R+HTG++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C K+F H R HTG++P
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKPY+C CG+ F ++ +H+R
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 41.8 bits (99), Expect = 7e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKPY C C K F S +H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C KTF + HL H R+HTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ ++ + C C K+F + HL H R HTGE+
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +G+KPY+C C + F Q + +H+R
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +G+KPY C C K F QI +H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.3 bits (147), Expect = 2e-12
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICG 377
+P+ C +C K F + +H R H+GEKP G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 52.6 bits (127), Expect = 1e-09
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ F C C K F H R+H+GEKP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKP++C+ CG+GF ++ H+R+
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKP+ C C K F S H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 24.8 bits (55), Expect = 9.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C++C + + T Y H+R+H G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSG 37
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 60.2 bits (147), Expect = 2e-12
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P+ C+ C+K F K++L H + H EKP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 54.8 bits (133), Expect = 2e-10
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 182 VHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ F C+ CEK+F K +L VH +TH EKP
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GEKP+ C C + F+ + + H++T
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
Score = 38.7 bits (91), Expect = 8e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 208 TRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKP+ C C+K F+ S + H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 27.9 bits (63), Expect = 0.60
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C C++ + +K L VH++ H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAE 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 3e-12
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ + C +CD F + + L H +H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ + C C+ F + L++H H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ GEK ++C C F+Q++ ++ H+
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ GEK + C CD F+Q S H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +CD + SL +H+ H+G
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVG 37
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 59.5 bits (145), Expect = 4e-12
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
+PY C QC K F +K L H R+HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 51.0 bits (123), Expect = 4e-09
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
GEKPY+CD CG+ F+Q + H R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
+ E+ + C C K+F +K L VH R HTG P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ + GEKPY C C K F+Q I H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 28.3 bits (64), Expect = 0.39
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y CDQC + + K SL VH R H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ + C +C + F K+HL H RIHTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 5e-09
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ + C C + F K HL H R HTGEKP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ + K +QC CGRGF + + +H+R
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 41.0 bits (97), Expect = 1e-05
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ + K + C+ C + F S +H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +C R + K L H+R H G
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTG 37
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 59.1 bits (144), Expect = 6e-12
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY C +C K F K+ L H R H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C C K+F K L VH RTH G +
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ +GEKPY+C+ CG+ F + + H RT
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKPY C C K F S I H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 25.2 bits (56), Expect = 5.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C++C + + K L VH R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAG 37
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
R + C+ C K F + ++ H RIHTGEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
ER C+ C K F + + H R HTGEKP
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ GE+ ++C CG+ F Q+++ +HRR
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ GE+ + C C K F Q S+ I+H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 9e-12
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+P CT+C K F K+ L H R H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ CT C K+F K L +H RTH +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP +C CG+ F + + H+RT
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT 34
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGEKP C C K F S I H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 25.6 bits (57), Expect = 4.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
C +C + + K L +H+R H+
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVD 37
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.3 bits (142), Expect = 9e-12
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
PY C +C K F +K+ L +H + H+G+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
E + C C K F RK L H +TH+G+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGE PY+C CG+ F++ + + H++T
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT 34
Score = 41.3 bits (98), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ TGE PY C C K F++ + H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 58.3 bits (142), Expect = 1e-11
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYR-IHTGEKPYQC 373
+PY C +C K F + L H+R HTGEKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 53.3 bits (129), Expect = 6e-10
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
+ TG+KPY+C CG+ F Q+ + +H R H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 47.2 bits (113), Expect = 9e-08
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTR-THTGEKPYAC 219
++ + C C K+F + L H R HTGEKP
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
+ TG+KPY C C K F Q + I+H + H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 57.9 bits (141), Expect = 1e-11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
PY C++C K F +K+ L +H R H GE
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E + C+ C K+F RK L H RTH GE +
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.0 bits (105), Expect = 9e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GE PY+C CG+ F + + + H+RT
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT 32
Score = 39.8 bits (94), Expect = 4e-05
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 209 RTHTGEKPYACYLCDKRFAQISDRIKH 235
+GE PY C C K F + I H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 57.6 bits (140), Expect = 2e-11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
R Y C +C K+F++K LT H RIHTG P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 47.2 bits (113), Expect = 8e-08
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
+R + C C KSF++K L +H R HTG P +
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
+G++ Y+C CG+ F Q + H R
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHER 31
Score = 36.8 bits (86), Expect = 4e-04
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 208 TRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +G++ Y C C K F Q H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 25.6 bits (57), Expect = 4.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C +C ++++ K SL +H R H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 57.5 bits (140), Expect = 2e-11
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
+PY C C F + HL H IHTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 51.8 bits (125), Expect = 2e-09
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
+ E+ + C C F + HL+ H HTG P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 51.4 bits (124), Expect = 3e-09
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
GEKPY+C+ CG F Q ++ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 45.6 bits (109), Expect = 3e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ + GEKPY C C RF Q++ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 56.9 bits (138), Expect = 3e-11
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
PY C QC K+F ++ L H R + P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 47.7 bits (114), Expect = 6e-08
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
+ E + C C KSF ++ L VH R+ + P +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 43.8 bits (104), Expect = 1e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
GE PY C CG+ F Q + H+R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 38.4 bits (90), Expect = 9e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ + GE PY C C K F Q H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 31.5 bits (72), Expect = 0.032
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C QC +++ + SL VH+R+
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQ 36
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 58.1 bits (140), Expect = 4e-11
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 26/94 (27%)
Query: 280 FKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQLLQHKRLHFP 339
C S+ H L HV + H+G + ++ VC
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH------VCYWEE--------------- 64
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
C + K+FK K L H R+HTGEK
Sbjct: 65 -----CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 52.3 bits (125), Expect = 5e-09
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 159 KSKTDRCELCDKVVTN---LAAHHNEVHAHERKFP--------CTFCEKSFKRKLHLKVH 207
+ + CD+ + L H H + C KSFK K L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 208 TRTHTGEKPYAC 219
R HTGEK
Sbjct: 82 IRVHTGEKSGPS 93
Score = 44.6 bits (105), Expect = 2e-06
Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 324 GEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHY-RIHTGEKPYQ--------CD 374
G+ KQ L K + CD+TF + L TH H G C
Sbjct: 7 GQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP 66
Query: 375 ICGRGFAQSNDMKKHRRT 392
G+ F + H R
Sbjct: 67 REGKSFKAKYKLVNHIRV 84
Score = 36.1 bits (83), Expect = 0.003
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 182 VHAHERKFPCTFCEKSFKRKLHLKVH-TRTHTGEKPYACYLC 222
+ + P C+++F L H T H G ++C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Score = 33.4 bits (76), Expect = 0.025
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 364 IHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
I + C R F+ +++ H H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 31.5 bits (71), Expect = 0.11
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 210 THTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
+ CD+ F+ + + + H+ H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 55.4 bits (134), Expect = 1e-10
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 333 HKRLHFPLRPYACTQ--CDKTFKKKNHLTTHYRIHTGEKPYQCD 374
+P+ACT C F + + L+ H R H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 51.9 bits (125), Expect = 2e-09
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 179 HNEVHAHERKFPCTF--CEKSFKRKLHLKVHTRTHTGEKPYAC 219
E+ F CT+ C F R L H R+H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 48.1 bits (115), Expect = 5e-08
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 360 THYRIHTGEKPYQCD--ICGRGFAQSNDMKKHRRT 392
+ TGEKP+ C CG F++S+++ +HRR+
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.3 bits (134), Expect = 1e-10
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+ Y C +C K F + HLT H +IHT +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 44.1 bits (105), Expect = 9e-07
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
T K Y C+ CG+ F + + +H++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ + C C K+F R HL H + HT + +
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ T K Y C C K F +I +H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
+PY C C F+ L +H RIHTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 54.0 bits (131), Expect = 3e-10
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYA 218
+ E+ +PC C F+ LK H R HTG P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 52.9 bits (128), Expect = 8e-10
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
GEKPY C+ICG F +K H R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 46.3 bits (111), Expect = 2e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHL 236
+ + GEKPY C +C RF + HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 25.9 bits (58), Expect = 3.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
YPC+ C ++ ++L H R H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 54.7 bits (131), Expect = 3e-10
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
Y C +C KK + L H R HT +PY C C F ++ KH ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 46.6 bits (110), Expect = 2e-07
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 319 VCDVCG---EYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+C+ CG + L +H R H +RPY CT C+ +FK K +LT H + K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.9 bits (108), Expect = 4e-07
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 188 KFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
K+ C C K+ LK H RTHT +PY C C+ F + KH+KS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 39.3 bits (91), Expect = 9e-05
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 164 RCELCDKVVTNLA--AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
CE C + H H R + CT+C SFK K +L H ++ K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 25.4 bits (55), Expect = 6.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C C+ +++TK +L H ++
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAH 54
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCD 374
+ + C +C K F + L H R+H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 48.4 bits (116), Expect = 3e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ C C K+F L++H R H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 47.6 bits (114), Expect = 6e-08
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GEK + CD CG+ F + ++ H+R
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEK + C C K F IS H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 27.6 bits (62), Expect = 0.94
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ CD+C + + +L +H+R H+G
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMG 37
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCD 374
+P+ C +C F L H R H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 50.7 bits (122), Expect = 5e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ TGEKP+QC CG F+ S + KH R+
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 49.5 bits (119), Expect = 1e-08
Identities = 10/44 (22%), Positives = 13/44 (29%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACY 220
E+ F C C +F L H R+H P
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 42.6 bits (101), Expect = 5e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
+ TGEKP+ C C F+ KHL+S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 26.0 bits (58), Expect = 3.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +C + SL+ H R+H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHER 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 9e-10
Identities = 53/335 (15%), Positives = 99/335 (29%), Gaps = 75/335 (22%)
Query: 3 PKETTSI--KCEACHRTFSSPYE-YGGHKLKCNLFLVQTTDDSYIVPAISQQSE----ST 55
P E S+ K C R P E + + ++ D A +
Sbjct: 300 PDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDK 354
Query: 56 LKTKTRTSADDLETLEISNT-------PTSAANVENKTLPLTYPCAKTKTRTSADDLETL 108
L T +S + LE E P SA ++ L L + + L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIW--FDVIKSDVMVVVNKL 411
Query: 109 EISNTPTSAANVENKTLPLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRC--- 165
S + K ++ P + + + +HR IV Y
Sbjct: 412 HKY----SLVEKQPKESTISIPSIYLELKVKLENEYALHRS----IVDHYNIPKTFDSDD 463
Query: 166 ---ELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLC 222
D+ + HH + H + F R + +L
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERM------TLF-RMV-----------------FL- 498
Query: 223 DKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKC 282
D RF + +I+H ++ N S+ N L Y ++ D P + ER +
Sbjct: 499 DFRF--LEQKIRHDSTAWNAS-GSILNTLQQLKFY-KPYICDNDP-----KYERLV---N 546
Query: 283 DLCGNILSSKHIL--QEHVRVVHMGLSRKYHYEYK 315
+ + + L ++ ++ + L + ++
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 32.1 bits (72), Expect = 0.39
Identities = 31/243 (12%), Positives = 77/243 (31%), Gaps = 73/243 (30%)
Query: 203 HLKVHTRTHTGEKPYAC----------YLCDKRFAQISDRIKHLKSSHNFD--------- 243
H H TGE Y ++ + + D K + S D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 244 ------FESVKNK-TTPLTRYLNKHLHDAHP---EAIKTE-RERKLIFKC------DLCG 286
F ++ +K + +++ + L + IKTE R+ ++ + L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 287 N--ILSSKHI--------LQEHVR--------VVH-MG----------LSRKYHYEYK-P 316
+ + + ++ L++ + ++ + + Y + K
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 317 DGV--CDV--CGEYKKQLLQHKRLHFPLRPYACTQCDKTFK---KKNHLTTHYRIHTGEK 369
+ ++ C + L ++L + + P ++ D + + + + R K
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 370 PYQ 372
PY+
Sbjct: 242 PYE 244
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 51.9 bits (124), Expect = 2e-09
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLC 222
++ C C K F+ HL H +H+GEKPY+
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 51.1 bits (122), Expect = 5e-09
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDIC 376
+ AC C K F+ HL H H+GEKPY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 0.001
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
K C+ICG+ F + +H+ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
Score = 28.0 bits (62), Expect = 0.77
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 208 TRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
+ K AC +C K F + +H S
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
Score = 25.7 bits (56), Expect = 4.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 319 VCDVCGEYKKQ---LLQHKRLHFPLRPYACTQC 348
C++CG+ + L +HK H +PY+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 25.7 bits (56), Expect = 4.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
C+ C + ++ L H+ +H G
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSG 37
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 49.6 bits (119), Expect = 9e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 361 HYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
R TG KP+QC C R F++S+ + HR+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 43.5 bits (103), Expect = 1e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
TR TG KP+ C CD+ F++ H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 40.0 bits (94), Expect = 3e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 333 HKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIH 365
R ++P+ C CD++F + +HL H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 39.2 bits (92), Expect = 5e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTH 211
+ F C C++SF R HL +H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 49.2 bits (118), Expect = 2e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQC 373
+PY+C +C +TF N L H ++HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 42.7 bits (101), Expect = 3e-06
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYAC 219
+ E+ + C C+++F L H + HT + +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 41.5 bits (98), Expect = 8e-06
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 363 RIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+GEKPY C C F+ +N + +H++
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 40.0 bits (94), Expect = 3e-05
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 208 TRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ +GEKPY+C C + F+ + ++H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQH 29
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 48.5 bits (115), Expect = 6e-08
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 329 QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKK 388
+ +++H R C++C F + K C+ C + Q + K
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 389 HRRT 392
Sbjct: 58 DEGN 61
Score = 43.1 bits (101), Expect = 5e-06
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 143 SLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKL 202
S ++ HLG ++ +C C + + + C C K ++
Sbjct: 5 SSGKRQKIHLG------DRSQKCSKCGIIFI-----RRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 203 HLKVHTRTHTGEKPYA 218
L +G+K
Sbjct: 54 ALNKDEGNESGKKTSG 69
Score = 38.9 bits (90), Expect = 2e-04
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 320 CDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPY 371
C CG + R + C +C K ++ L +G+K
Sbjct: 21 CSKCGIIFIRRSTLSRR----KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
++H +R C+ C F R+ T + K C C K Q + K
Sbjct: 7 GKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDSCQEAALNKD 58
Score = 35.0 bits (80), Expect = 0.004
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 203 HLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ H G++ C C F + S +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 47.2 bits (112), Expect = 1e-07
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 332 QHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKP 370
P+ C++CD+ F ++N+L H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 41.8 bits (98), Expect = 7e-06
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
A E F C+ C++ F ++ +L H RTH +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 40.6 bits (95), Expect = 2e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 360 THYRIHTGEKPYQCDICGRGFAQSNDMKKHRRT 392
+ GE P++C C R F Q N + +H RT
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 38.3 bits (89), Expect = 1e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 207 HTRTHTGEKPYACYLCDKRFAQISDRIKHLK 237
+ GE P+ C CD+ F Q + ++H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 28.3 bits (63), Expect = 0.45
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
+ C +CDR + + L H R H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 48.6 bits (115), Expect = 2e-07
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 203 HLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSS-HNFDFESVKNKTTPLTRYLNKH 261
K++ TG + C C + + + H+ + H D + P +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 262 LHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEH 298
E + ++ + KC CG+ S L H
Sbjct: 66 RSLLEMEGKEDAQK---VLKCMYCGHSFESLQDLSVH 99
Score = 42.8 bits (100), Expect = 2e-05
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 357 HLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
+ I TG ++C C + ++ H
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 42.8 bits (100), Expect = 2e-05
Identities = 9/79 (11%), Positives = 17/79 (21%), Gaps = 1/79 (1%)
Query: 324 GEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQS 383
G + + + C C + LT H TG +
Sbjct: 1 GSSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKR 59
Query: 384 NDMKKHRRTVHKAQIHAVE 402
+ R + +
Sbjct: 60 WSKPRKRSLLEMEGKEDAQ 78
Score = 40.9 bits (95), Expect = 7e-05
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 320 CDVCGE---YKKQLLQHKRL--HFPLRPYACTQC---DKTFKKKNHLTTHYRIHTGEKPY 371
C C +L H H+ + + +K L +K
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 372 QCDICGRGFAQSNDMKKH-RRTVHKAQI 398
+C CG F D+ H +T H ++
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 38.6 bits (89), Expect = 5e-04
Identities = 19/112 (16%), Positives = 24/112 (21%), Gaps = 27/112 (24%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERK 188
+ C C Y T L VH D D
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNET-------GHYRDDNHETDN------------------ 54
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
S RK L +K C C F + D H+ +
Sbjct: 55 --NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 47.6 bits (112), Expect = 5e-07
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 326 YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSND 385
+ L + + C C F L H R E C +C + F ++
Sbjct: 58 DESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDS 115
Query: 386 MKKHRRTVH 394
H H
Sbjct: 116 ALDHVCKKH 124
Score = 44.2 bits (103), Expect = 8e-06
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKS 238
+F C C F + LK H R E C +C K F + H+
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCK 122
Query: 239 SHN 241
HN
Sbjct: 123 KHN 125
Score = 31.4 bits (70), Expect = 0.17
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 352 FKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQI 398
++ + C +C F+ S +K+H R ++
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV 102
Score = 29.9 bits (66), Expect = 0.76
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 164 RCELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTH 211
C LC ++ + + E C C+K F H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKK 123
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 46.8 bits (110), Expect = 5e-07
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 165 CELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDK 224
C LC+ +++L + C +C F + H + K C C +
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMR 77
Query: 225 RFAQISDRIKHLKSSHN 241
F +H HN
Sbjct: 78 TFKSSFSIWRHQVEVHN 94
Score = 42.2 bits (98), Expect = 2e-05
Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 318 GVCDVCGEYKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICG 377
+C+ + H+RL C C F H K C C
Sbjct: 20 RLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECM 76
Query: 378 RGFAQSNDMKKHRRTVHKAQIHAVED 403
R F S + +H+ VH A
Sbjct: 77 RTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 39.9 bits (92), Expect = 1e-04
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 9/81 (11%)
Query: 128 TYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLA-AHHNEVHAHE 186
Y C C+ + H R C C + +E
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLC--------RNAAVCPYCSLRFFSPELKQEHESKCEY 67
Query: 187 RKFPCTFCEKSFKRKLHLKVH 207
+K C C ++FK + H
Sbjct: 68 KKLTCLECMRTFKSSFSIWRH 88
Score = 31.8 bits (71), Expect = 0.12
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKH 235
+ + V E + C C L H R C C RF + +H
Sbjct: 6 SGASPVENKEV-YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH 61
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 43.5 bits (103), Expect = 1e-06
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
R F C C ++F R+ HLK H R+HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 42.3 bits (100), Expect = 4e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
R + C C + F ++ HL HYR HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.7 bits (70), Expect = 0.038
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRT 392
+ + C++C R FA+ +K+H R+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 41.4 bits (98), Expect = 8e-06
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 341 RPYACT--QCDKTFKKKNHLTTHYRIHTGEK 369
RP+ CT C K F + + L H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 39.1 bits (92), Expect = 5e-05
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 187 RKFPCTF--CEKSFKRKLHLKVHTRTHTGEK 215
R F CT+ C K F R L+ H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.9 bits (68), Expect = 0.092
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 369 KPYQCDI--CGRGFAQSNDMKKHRRT 392
+P+ C CG+ F +S+++++H+RT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 46.0 bits (108), Expect = 2e-05
Identities = 8/59 (13%), Positives = 13/59 (22%)
Query: 339 PLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
P+ K + YQC +C D+ H +
Sbjct: 149 PMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 41.0 bits (95), Expect = 6e-04
Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 2/105 (1%)
Query: 49 SQQSESTLKTKTRTSADDLETLEISNTPTSAANVENKTLPLTYPCAKTKTRTSADDLETL 108
+++ + + + + + S+T + AN +++ + + S E
Sbjct: 99 KDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEAT 158
Query: 109 EISNTPTSAANVENKTLP--LTYPCDQCDRTYQTKKSLYVHRRAH 151
+ A T Y C C + L H +H
Sbjct: 159 SAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 39.5 bits (91), Expect = 0.002
Identities = 29/227 (12%), Positives = 61/227 (26%), Gaps = 19/227 (8%)
Query: 46 PAISQQSESTLKTKTRTSADDLETLEISNTPTSAANVENKTLPLTYPCAKTKTRTSADDL 105
+ +Q + + A + L + N + + T ++ + AD+
Sbjct: 47 TSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRG-DLVNEHSEAKDEADEA 105
Query: 106 ETLEISNTPTSAANVENKTLPLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRC 165
+ +T S A V + + + G + T
Sbjct: 106 TQKQAKDTDKSKAQVTYSDTGIN----------NANELSRSGNVDNEGGSNQKPMSTRIA 155
Query: 166 ELCDKVVTNLAAH--HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCD 223
E +V+ A + + C C L L H +H G
Sbjct: 156 EATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH-GLHGNMTLTSS 214
Query: 224 KRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPEAI 270
+ I++ I ++ V+ + + LH P +
Sbjct: 215 EIQRHITEFISSWQNH-----PIVQVSADVENKKTAQLLHADTPRLV 256
Score = 35.2 bits (80), Expect = 0.049
Identities = 10/76 (13%), Positives = 17/76 (22%)
Query: 290 SSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQLLQHKRLHFPLRPYACTQCD 349
++ + L V + G S + + + Y C C
Sbjct: 128 NNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCS 187
Query: 350 KTFKKKNHLTTHYRIH 365
L H H
Sbjct: 188 AVLFSPLDLDAHVASH 203
Score = 29.4 bits (65), Expect = 2.4
Identities = 8/69 (11%), Positives = 16/69 (23%)
Query: 239 SHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEH 298
+ T + ++C +C +L S L H
Sbjct: 140 DNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH 199
Query: 299 VRVVHMGLS 307
V + +
Sbjct: 200 VASHGLHGN 208
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 39.6 bits (93), Expect = 4e-05
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEK 215
+++ C C K + + HL+ H R HTGE+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 38.9 bits (91), Expect = 6e-05
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 341 RPYACT--QCDKTFKKKNHLTTHYRIHTGEK 369
+ + C C K + K +HL H R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.4 bits (56), Expect = 4.1
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 366 TGEKPYQCDI--CGRGFAQSNDMKKHRRT 392
+K + C I CG+ + +++ ++ H R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRW 32
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 41.5 bits (97), Expect = 5e-05
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 213 GEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNK 250
G + C CD+ FA + H K H F+ +S+ +K
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHK 49
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 35.9 bits (82), Expect = 7e-04
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTG 367
+RPY+C+ C K F K+ + THYR+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.1 bits (54), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRR 391
+PY C +CG+ F+ + M+ H R
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
Score = 24.8 bits (53), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTG 213
R + C+ C K F K ++ H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.0 bits (82), Expect = 8e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
+ + F C +C K FK K L+ H R HT EK
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 32.9 bits (74), Expect = 0.009
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+ + C C+K FK K+ L H RIHT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 35.5 bits (81), Expect = 0.001
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
++PY C C + F L H RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.3 bits (65), Expect = 0.16
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
+ + C C++ F L+ H R HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.5 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRT 392
KPY C C R FA +++H R
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRI 25
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 36.0 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHTGEK 215
++ F C F C K+FKR+ +++ H +TH ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.5 bits (61), Expect = 0.84
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 339 PLRPYACT--QCDKTFKKKNHLTTHYRIHTGEK 369
P + + C C KTFK++ ++ +H + H ++
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.1 bits (77), Expect = 0.004
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHTG 213
+ E+ + C C FKRK + H R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.7 bits (76), Expect = 0.006
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTG 367
+PY+C C FK+K+ ++ H R H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.0 bits (74), Expect = 0.012
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRRTVHKA 396
+GEKPY C +CG F + + M H R+ +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 29.1 bits (64), Expect = 0.24
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 211 HTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
+GEKPY+C +C RF + H++S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 36.8 bits (86), Expect = 0.007
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R++H R YH E+ P D+ GE
Sbjct: 143 RLIHPQSGRSYHEEFNPPKEPMKDDITGE 171
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 36.8 bits (86), Expect = 0.008
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R++H R YH + P D DV GE
Sbjct: 132 RLIHPASGRSYHKIFNPPKEDMKDDVTGE 160
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 36.4 bits (85), Expect = 0.008
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R VH R YH ++ P +G DV GE
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGE 151
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 36.4 bits (85), Expect = 0.008
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R H R YH +Y P G+ DV GE
Sbjct: 132 RCTHPASGRIYHVKYNPPKQPGIDDVTGE 160
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 36.4 bits (85), Expect = 0.010
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R H R YH ++ P +G DV GE
Sbjct: 131 RRTHPASGRTYHVKFNPPKVEGKDDVTGE 159
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 36.0 bits (84), Expect = 0.011
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R + YH + P +G+CD G
Sbjct: 127 RWICKTCGATYHTIFNPPAVEGICDKDGG 155
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 36.1 bits (84), Expect = 0.012
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R++H R YH + P DV E
Sbjct: 156 RLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 36.0 bits (84), Expect = 0.014
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R +H R Y+ E+ P G+ D+ GE
Sbjct: 128 RWIHPASGRVYNIEFNPPKTVGIDDLTGE 156
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 35.7 bits (83), Expect = 0.015
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R +H R Y+ ++ P G+ DV GE
Sbjct: 148 RWIHPPSGRVYNLDFNPPHVHGIDDVTGE 176
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 35.6 bits (83), Expect = 0.015
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 300 RVVHMGLSRKYHYEYKP---DGVCDVCGE 325
R + YH + P G+CD G
Sbjct: 127 RRICSVCGTTYHLVFNPPKTPGICDKDGG 155
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 33.4 bits (76), Expect = 0.016
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 330 LLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKH 389
H+ PLR C CD L H + G + C CGR D+K H
Sbjct: 5 SSGHEETECPLRLAVCQHCDLELSILK-LKEHED-YCGARTELCGNCGRNVLVK-DLKTH 61
Query: 390 RRTVHKAQ 397
+
Sbjct: 62 PEVCGREG 69
Score = 26.9 bits (59), Expect = 3.5
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 177 AHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHL 236
+ H E R C C+ LK H + G + C C + + D H
Sbjct: 6 SGHEETECPLRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNV-LVKDLKTHP 62
Query: 237 KS 238
+
Sbjct: 63 EV 64
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.018
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+PY C QC K +L H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.5 bits (60), Expect = 0.91
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 187 RKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
+ + C C + K +L VH R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 4.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 129 YPCDQCDRTYQTKKSLYVHRRAHLG 153
Y C QC K +L VH R H G
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTG 34
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 31.7 bits (72), Expect = 0.018
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRTVHKAQI 398
K Y C +C R F + + + +H + +H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 24.8 bits (54), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 215 KPYACYLCDKRFAQISDRIKHLKSSHN 241
K YAC LC++ F + I+H + H+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (71), Expect = 0.028
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 337 HFPLRPYACTQCDKTFKKKNHLTTHYRIHT 366
+ + C +C+KTF +LT H RIHT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 28.6 bits (63), Expect = 0.42
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHT 212
E+ F C CEK+F +L H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 28.3 bits (62), Expect = 0.56
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRR 391
EK ++C+ C + F+ S + +H R
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHER 33
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.8 bits (79), Expect = 0.034
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 340 LRPYACTQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
LR + K + T H + GEK Q + + D++
Sbjct: 178 LRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 32.1 bits (72), Expect = 0.28
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 326 YKKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
Q H+ L + + ++ L + +
Sbjct: 192 SMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.0 bits (64), Expect = 2.8
Identities = 7/52 (13%), Positives = 12/52 (23%)
Query: 189 FPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSH 240
+ K +H GEK ++ D + S
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 28.6 bits (63), Expect = 3.1
Identities = 4/37 (10%), Positives = 10/37 (27%)
Query: 179 HNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
H + E++ E+ L+ +
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3m1h_A Lysine specific cysteine protease; beta jelly roll barrel, cleaved
adhesin family, Lys-gingipai hemagglutination domain;
1.56A {Porphyromonas gingivalis}
Length = 178
Score = 34.0 bits (77), Expect = 0.043
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 38 TTDDSYIVPAISQQSESTL--KTKTRTSADDLETLEI--SNTPTSAANVENKTLPLTYPC 93
D+ + P +S TL + + E + S+T A+N N L
Sbjct: 63 NPDNYLVTPELSLPGGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTA 122
Query: 94 AKTKTRTSADD 104
T A
Sbjct: 123 KTVVTAPEAIR 133
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.052
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+ + C +C + F + L H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.9 bits (61), Expect = 0.65
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
+ EK +QC CG F Q + +H + +H Q
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEH-QVLHMGQ 38
Score = 24.8 bits (53), Expect = 8.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 212 TGEKPYACYLCDKRFAQISDRIKH 235
+ EK + C C + F Q I+H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEH 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.062
Identities = 56/369 (15%), Positives = 95/369 (25%), Gaps = 145/369 (39%)
Query: 69 TLEIS-NTPTS---AANV--E--NKTLPLTYPCAKTKTRTSADDLETLEISNTPTSAANV 120
+LE PT+ A+ E NK LP T A D E PT+
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILP-------EPTEGFAADDE-------PTT--PA 58
Query: 121 ENKTLPLTYPCDQCDRTYQTKKSLYVHRRAHLGIVYRYKSKTDRCELCDKVVTNLAA--- 177
E L + LG V + + + L
Sbjct: 59 E---LVGKF----------------------LGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 178 ---HHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIK 234
N++HA K K K +K Y+ A+I +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIK-------------NYI----TARIMAKRP 136
Query: 235 HLKSSHNFDFESVKNKTTPL----------TRYLN--KHLHDAHPEAIKTERERKLIFKC 282
K S++ F +V L Y + L+ + +
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG----------- 185
Query: 283 DLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVCDVCGEYKKQLLQHKRLHFPLRP 342
DL I S L E +R + + G ++ + L++ + P +
Sbjct: 186 DL---IKFSAETLSELIRTTL---DAEKVF---TQG-LNI-----LEWLENPS-NTPDKD 229
Query: 343 YAC-----------TQCDKTFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRR 391
Y Q HY + + G + ++ + +
Sbjct: 230 YLLSIPISCPLIGVIQL-----------AHYVV-------TAKLLGFTPGE---LRSYLK 268
Query: 392 --TVHKAQI 398
T H +
Sbjct: 269 GATGHSQGL 277
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 30.2 bits (68), Expect = 0.077
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 188 KFPCTFCEKSFKRKLHLKVHTRTHTGEK 215
KF C C K F R HL +H H +K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 29.5 bits (66), Expect = 0.15
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEK 369
+AC +C K F + +HLT H +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.0 bits (77), Expect = 0.11
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRRTVHK 395
Y C++C F+ + + +H R+ H+
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHR 141
Score = 28.6 bits (63), Expect = 4.4
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 245 ESVKNKTTPLTRYLNKHLHDAHPEAIKTE-RERKLIFKCDLCGNILSSKHILQEHVRVVH 303
+ + + P+++K + C++C S+ L EH+R H
Sbjct: 81 RPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.9 bits (67), Expect = 0.12
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 188 KFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
KF C C K F R HL H H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 28.7 bits (64), Expect = 0.27
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGEKP 370
+AC +C K F + +HL+ H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.5 bits (70), Expect = 0.12
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 165 CELCD----KVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
C C+ K + L H + C C K FK K L HT KP
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 27.6 bits (60), Expect = 3.0
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 188 KFPCTFCEKSFKRKLH-LKVHTRT-HTGEKPYACYLCDKRFAQISDRIKHLKSSHN 241
+ C C ++ L LK H + C C K+F + H + H+
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 27.2 bits (59), Expect = 3.2
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 343 YACTQCDKTFKKK-NHLTTHYRI-HTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
C C+ +K L H + + +C C + F + H H A+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 32.6 bits (75), Expect = 0.13
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 5/31 (16%)
Query: 300 RVVHMGLSRKYHYEYKP-----DGVCDVCGE 325
R + + + VC VCG
Sbjct: 126 RRICKNNPNHPNNIFIDAIKPNGDVCRVCGG 156
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.5 bits (65), Expect = 0.18
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 342 PYACTQCDKTFKKKNHLTTHYRIHTGE 368
C +C K F+ + L H +H GE
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 27.2 bits (59), Expect = 1.5
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 184 AHERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
A + C C K F+ L H H GE
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.6 bits (63), Expect = 0.26
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+P C C K F + + L H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.7 bits (58), Expect = 1.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 191 CTFCEKSFKRKLHLKVHTRTHTGEK 215
C C K+F + L H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRR 391
KP QC +CG+ F Q++ + H R
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVR 23
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.0 bits (64), Expect = 0.28
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 368 EKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
+KPY CDICG+ + + H H A+
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAE 34
Score = 25.5 bits (55), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYR 363
+PYAC C K +K + L+ HY
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.44
Identities = 16/116 (13%), Positives = 25/116 (21%), Gaps = 31/116 (26%)
Query: 203 HLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHNFDFESVKNKTTPLTRYLNKHL 262
H + + E Y C C + ++ H+ S H
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH---------------------- 42
Query: 263 HDAHPEAIKTERERKLIFKCDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDG 318
+ C C + L EH H G K +
Sbjct: 43 ---------PNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNN 89
Score = 29.0 bits (64), Expect = 0.93
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 329 QLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTH-YRIHTG---EKPYQCDICGRGFAQSN 384
+++ Y C C N T H H Y C C + +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 385 DMKKHRRTVH 394
+ +H H
Sbjct: 65 ALSEHNLKYH 74
Score = 29.0 bits (64), Expect = 0.97
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 164 RCELCDKVVTNLAA---HHNEVHAHERK---FPCTFCEKSFKRKLHLKVH-TRTHTGEKP 216
C+ C +L H + H + + C C KR L H + H GE+
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN 79
Query: 217 YAC 219
+
Sbjct: 80 FKL 82
Score = 28.6 bits (63), Expect = 1.4
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 356 NHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVH 394
+H + + E Y+C C N H + H
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
Score = 28.2 bits (62), Expect = 1.9
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 119 NVENKTLPLTYPCDQCDRTYQTKKSLYVH-RRAHLGIVYRYKSKTDRCELCDKVVTNLAA 177
N +NK + Y C C H H +V C K L+
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 178 HHNEVHAHERKFPCT 192
H+ + H E F T
Sbjct: 69 HNLKYHPGEENFKLT 83
Score = 27.0 bits (59), Expect = 4.4
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Query: 174 NLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRT-HTG---EKPYACYLCDKRFAQI 229
+ H+ + E + C +C H + H Y C C+ +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 230 SDRIKHLKSSH 240
+H H
Sbjct: 64 DALSEHNLKYH 74
Score = 26.7 bits (58), Expect = 6.1
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 343 YACTQCDKTFKKKNHLTTH-YRIHTGEKPYQCDI 375
Y C +C+ K+ + L+ H + H GE+ ++ +
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.45
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 327 KKQLLQHKRLHFPLRPYA 344
K+ L K+L L+ YA
Sbjct: 19 KQAL---KKLQASLKLYA 33
Score = 29.1 bits (64), Expect = 1.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 17/40 (42%)
Query: 50 QQS----ESTLKTKTRTSADDLETLEISNTPTSA--ANVE 83
+Q+ +++LK ADD + P A A +E
Sbjct: 19 KQALKKLQASLKL----YADD-------SAPALAIKATME 47
Score = 27.6 bits (60), Expect = 4.7
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 19/44 (43%)
Query: 233 IKHLKSSHNFDFESVKNKTTPLTRYLNKHLHDAHPE-AIKTERE 275
+K L++S L + D+ P AIK E
Sbjct: 22 LKKLQAS------------------LKLYADDSAPALAIKATME 47
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 27.7 bits (61), Expect = 0.53
Identities = 8/27 (29%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 368 EKPYQCDI--CGRGFAQSNDMKKHRRT 392
++PY CD C + F +++D+ +H+++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKS 27
Score = 25.7 bits (56), Expect = 2.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 341 RPYAC--TQCDKTFKKKNHLTTHYRIHT 366
RPY+C CDK F + + L H + H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 25.0 bits (54), Expect = 6.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 186 ERKFPCTF--CEKSFKRKLHLKVHTRTHT 212
+R + C C+K+F R L H ++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 26.6 bits (58), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 369 KPYQCDICGRGFAQSNDMKKHRR 391
KPY C+ CG+ F QS+ + H R
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
Score = 24.7 bits (53), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIH 365
+PY C +C K F + + L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.3 bits (52), Expect = 9.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 215 KPYACYLCDKRFAQISDRIKHLK 237
KPY C C KRF Q S H++
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal
center, electron transport; 1.80A {Desulfovibrio gigas}
SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Length = 36
Score = 26.8 bits (59), Expect = 1.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 10/31 (32%)
Query: 275 ERKLIFKCDLCGNILSSKHILQEHVRVVHMG 305
++KC+LCG + V+V+ G
Sbjct: 2 NEGDVYKCELCGQV----------VKVLEEG 22
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.6 bits (58), Expect = 1.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 365 HTGEKPYQCDICGRGFAQSNDMKKHRR 391
+G++P+ C IC F + +H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 25.9 bits (56), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHT 366
RP+ C C F K + H ++HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.5 bits (55), Expect = 4.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 211 HTGEKPYACYLCDKRFAQISDRIKHLK 237
+G++P+ C +C F ++ +HLK
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 24.3 bits (52), Expect = 9.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 183 HAHERKFPCTFCEKSFKRKLHLKVHTRTHT 212
+ +R F C C +F K + H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 1.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 341 RPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+P+ C+ C+ + K++L H H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.5 bits (60), Expect = 2.5
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 343 YACTQCDK-TFKKKNHLTTHYRIHTGEKPYQCDICGRGFAQSNDMKKHRRTVHKAQ 397
+C C K L H ++ + C CG+ MK H H +
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 26.0 bits (56), Expect = 9.6
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 6/57 (10%)
Query: 164 RCELCD----KVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKP 216
C C K + L H + + F C C K + +K H + P
Sbjct: 36 SCPTCQAVGRKTIEGLKKHME--NCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 26.0 bits (56), Expect = 9.7
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 188 KFPCTFCEK-SFKRKLHLKVHTRTHTGEKPYACYLCDKRFAQISDRIKHLKSSHN 241
C C+ K LK H ++ + C+ C K+ ++ H+ ++HN
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.9 bits (57), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 338 FPLRPYACTQCDKTFKKKNHLTTHYRIHTGEK 369
+P R Y C+ C + F+ L H +H ++
Sbjct: 2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.8 bits (56), Expect = 3.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 343 YACTQCDKTFKKKNHLTTHYR 363
+AC C K F + + L+ H +
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.0 bits (61), Expect = 3.1
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 215 KPYACYLCDKRFAQISDRIKHLKS-SHNFDFESVKNKTTPLTRYLNKHLHDAHPEAIKTE 273
C +C S ++ H +S H K A E E
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 274 RERKLIFKCDLCGNILSSKHILQEH 298
K C +C SS + + H
Sbjct: 91 DRSKC---CPVCNMTFSSPVVAESH 112
Score = 26.5 bits (57), Expect = 8.4
Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 9/105 (8%)
Query: 264 DAHPEAIKTERERKLIFK---CDLCGNILSSKHILQEHVRVVHMGLSRKYHYEYKPDGVC 320
RE IF C +C +L S+ H +
Sbjct: 14 VGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQ----SRKHANKVRRYMAINQ 69
Query: 321 DVCGEYKKQLLQHKRLHFPL--RPYACTQCDKTFKKKNHLTTHYR 363
K+ R C C+ TF +HY
Sbjct: 70 GEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESHYI 114
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.4 bits (58), Expect = 4.8
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 319 VCDVCGEY--KKQLLQHKRLHFPLRPYACTQCDKTFKKKNHLTTHYRIHT 366
C+ CGE K Q+ +H +C C K F + Y+ H
Sbjct: 12 TCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDD-----YKSHV 56
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 5.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIHTGE 368
Y C++C TF + HL H + H +
Sbjct: 13 YECSKCQATFNLRKHLIQHQKTHAAK 38
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 24.7 bits (53), Expect = 5.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 214 EKPYACYLCDKRFAQISDRIKHLKS 238
EKP++C LC +R S KHL++
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRT 25
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 6.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 186 ERKFPCTFCEKSFKRKLHLKVHTRTHTGE 214
+ C C K FK K LK H HT +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.7 bits (53), Expect = 6.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 343 YACTQCDKTFKKKNHLTTHYRIH 365
Y C C+++F +K+ L+ H R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 27.6 bits (62), Expect = 6.5
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 300 RVVHMGLSRKYHYEYKPDGVCDVCGE 325
R + + YH +Y P +
Sbjct: 129 RRLDPVTGKIYHLKYSPP-ENEEIAS 153
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis,
cytoplasm, polymorphism, zinc, zinc-FIN metal binding
protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Length = 85
Score = 25.9 bits (57), Expect = 6.7
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 150 AHLGIVYRYKSKTDRCELCDKVVTNLAAHHNEVHAHERKFP-CTF 193
A G Y + +C C ++ N + + H++ +P C+F
Sbjct: 34 ARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSF 78
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.8 bits (53), Expect = 7.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 366 TGEKPYQCDICGRGFAQSNDMKKHRRTVHKA 396
+G Y C +C + F S ++ H R VH A
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGA 33
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.0 bits (59), Expect = 8.8
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 165 CELCDKVVTNLAAHHNEVHAHERKFPCTFCEKSFKRKLHLKVHTRTHTGEKPYACYLCDK 224
E C + ++ H C C++ F++ H+ +H + +C C
Sbjct: 87 NEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAA 145
Query: 225 RFAQISDRIKHLKS 238
D+ H ++
Sbjct: 146 SM-AFEDKEIHDQN 158
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 27.5 bits (60), Expect = 9.0
Identities = 13/61 (21%), Positives = 15/61 (24%), Gaps = 9/61 (14%)
Query: 281 KCDLCGNILSSKHILQEHVRVV-HMGLSRKYHYEYKPDGVCDVCGEYKKQLLQHKRLHFP 339
KC C SKH+ + E C C Y KQ H
Sbjct: 224 KCSHCEE---SKHLAYLSLEHDGQPAEKAVLRAE-----TCPSCQGYLKQFYLEFDRHAD 275
Query: 340 L 340
Sbjct: 276 A 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.406
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,758,045
Number of extensions: 320824
Number of successful extensions: 2423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2098
Number of HSP's successfully gapped: 968
Length of query: 405
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,021,377
Effective search space: 1242605493
Effective search space used: 1242605493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)