Query psy3590
Match_columns 258
No_of_seqs 154 out of 347
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 20:30:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1055|consensus 99.9 2.4E-29 5.2E-34 254.4 0.8 144 1-148 653-797 (865)
2 PF00003 7tm_3: 7 transmembran 99.5 4.5E-15 9.8E-20 128.7 3.2 76 1-79 163-238 (238)
3 KOG1056|consensus 99.2 3.2E-12 7E-17 132.6 0.2 83 3-88 735-817 (878)
4 KOG4418|consensus 97.2 0.00053 1.2E-08 67.0 6.0 79 2-81 114-194 (438)
5 smart00338 BRLZ basic region l 90.1 0.96 2.1E-05 32.8 5.5 36 106-141 29-64 (65)
6 PF04156 IncA: IncA protein; 88.9 4.8 0.0001 34.4 9.7 34 107-140 85-118 (191)
7 PF05529 Bap31: B-cell recepto 88.8 0.26 5.5E-06 42.8 1.9 37 108-144 152-188 (192)
8 PRK13729 conjugal transfer pil 88.4 2.7 5.9E-05 42.5 9.0 42 107-148 80-128 (475)
9 PF00170 bZIP_1: bZIP transcri 87.9 1.9 4E-05 31.3 5.7 35 106-140 29-63 (64)
10 PF07334 IFP_35_N: Interferon- 85.7 1.5 3.2E-05 34.2 4.3 28 112-139 2-29 (76)
11 KOG3335|consensus 85.3 2.6 5.7E-05 37.6 6.2 57 116-172 105-161 (181)
12 PHA03155 hypothetical protein; 85.3 2.4 5.3E-05 35.4 5.7 38 105-142 10-60 (115)
13 PRK10722 hypothetical protein; 85.0 4.6 9.9E-05 37.7 7.9 37 109-145 175-214 (247)
14 PF06637 PV-1: PV-1 protein (P 85.0 1.4 3E-05 43.7 4.8 38 107-145 347-384 (442)
15 PF11544 Spc42p: Spindle pole 84.9 0.79 1.7E-05 35.7 2.5 34 114-147 2-35 (76)
16 KOG4571|consensus 83.5 2.2 4.8E-05 40.7 5.3 36 107-142 252-287 (294)
17 PRK00888 ftsB cell division pr 82.7 6.9 0.00015 31.6 7.2 30 108-137 32-61 (105)
18 KOG1924|consensus 82.5 3.4 7.3E-05 44.5 6.6 24 114-137 485-508 (1102)
19 PF06667 PspB: Phage shock pro 82.3 2.8 6E-05 32.5 4.5 28 106-133 38-65 (75)
20 PF14584 DUF4446: Protein of u 82.0 6.8 0.00015 33.8 7.3 39 107-145 43-81 (151)
21 PRK10884 SH3 domain-containing 81.0 3.2 7E-05 37.4 5.2 35 110-144 132-166 (206)
22 PF11365 DUF3166: Protein of u 79.6 9.9 0.00021 30.8 7.0 41 106-146 4-44 (96)
23 PRK14127 cell division protein 79.2 5.3 0.00011 32.9 5.4 36 107-142 34-69 (109)
24 PF04102 SlyX: SlyX; InterPro 78.7 6.4 0.00014 29.4 5.4 41 107-147 8-48 (69)
25 COG2433 Uncharacterized conser 77.6 3.8 8.3E-05 42.7 5.1 39 107-145 426-464 (652)
26 PRK09458 pspB phage shock prot 77.5 8 0.00017 30.1 5.7 60 62-133 6-65 (75)
27 PHA03162 hypothetical protein; 77.3 4.7 0.0001 34.6 4.7 38 105-142 15-69 (135)
28 COG4026 Uncharacterized protei 76.6 5.8 0.00013 37.2 5.5 36 107-142 139-174 (290)
29 PF15058 Speriolin_N: Sperioli 76.6 11 0.00024 34.3 7.1 38 107-145 9-46 (200)
30 PF08781 DP: Transcription fac 76.5 5.7 0.00012 34.2 5.1 32 110-141 1-32 (142)
31 PRK09413 IS2 repressor TnpA; R 75.8 9.1 0.0002 31.0 5.9 30 112-141 73-102 (121)
32 TIGR00219 mreC rod shape-deter 75.7 3.5 7.6E-05 38.5 4.0 25 111-135 67-91 (283)
33 KOG0804|consensus 75.0 6 0.00013 40.0 5.5 30 113-142 417-446 (493)
34 PF07407 Seadorna_VP6: Seadorn 74.6 4.6 9.9E-05 39.6 4.5 28 110-137 32-59 (420)
35 PF04977 DivIC: Septum formati 74.3 8.4 0.00018 28.0 4.9 28 109-136 23-50 (80)
36 PF10458 Val_tRNA-synt_C: Valy 73.5 6.9 0.00015 28.8 4.3 29 114-142 1-29 (66)
37 PRK02119 hypothetical protein; 73.2 12 0.00026 28.5 5.7 39 107-145 13-51 (73)
38 PRK04406 hypothetical protein; 73.1 12 0.00026 28.7 5.6 40 107-146 15-54 (75)
39 PRK02793 phi X174 lysis protei 72.2 13 0.00029 28.1 5.7 40 107-146 12-51 (72)
40 COG3883 Uncharacterized protei 71.9 5.7 0.00012 37.4 4.3 38 107-144 63-100 (265)
41 PRK00295 hypothetical protein; 71.9 11 0.00024 28.2 5.1 40 107-146 9-48 (68)
42 PF12240 Angiomotin_C: Angiomo 71.5 17 0.00037 33.2 7.1 40 107-146 133-172 (205)
43 PRK03100 sec-independent trans 71.3 13 0.00029 31.7 6.1 15 115-129 55-69 (136)
44 PF08232 Striatin: Striatin fa 70.7 23 0.00051 29.7 7.4 43 106-148 28-70 (134)
45 PF04201 TPD52: Tumour protein 70.6 10 0.00023 33.4 5.4 35 107-141 33-67 (162)
46 PF07716 bZIP_2: Basic region 70.6 10 0.00022 26.8 4.4 25 107-131 29-53 (54)
47 KOG3119|consensus 70.2 15 0.00033 34.1 6.8 39 107-145 219-257 (269)
48 PF04859 DUF641: Plant protein 70.0 12 0.00026 31.8 5.5 38 107-144 84-121 (131)
49 PF02183 HALZ: Homeobox associ 69.6 18 0.00038 25.3 5.4 34 108-141 10-43 (45)
50 PRK02793 phi X174 lysis protei 69.5 27 0.00058 26.5 6.8 39 107-145 19-57 (72)
51 TIGR02449 conserved hypothetic 68.9 8.7 0.00019 29.1 4.0 37 109-145 13-49 (65)
52 PRK00736 hypothetical protein; 68.8 21 0.00046 26.7 6.1 40 107-146 9-48 (68)
53 PRK13922 rod shape-determining 68.8 11 0.00024 34.2 5.5 22 113-134 72-93 (276)
54 PF13815 Dzip-like_N: Iguana/D 68.7 13 0.00029 30.2 5.4 34 107-140 84-117 (118)
55 COG3879 Uncharacterized protei 68.7 20 0.00043 33.6 7.1 29 114-142 54-82 (247)
56 PRK13922 rod shape-determining 68.5 8.6 0.00019 35.0 4.7 38 107-144 73-113 (276)
57 PF06305 DUF1049: Protein of u 68.5 7 0.00015 28.1 3.3 22 115-136 46-67 (68)
58 KOG2829|consensus 68.1 6.6 0.00014 37.8 3.9 34 109-142 131-164 (326)
59 PF11932 DUF3450: Protein of u 67.4 13 0.00028 33.6 5.6 38 107-144 60-97 (251)
60 PF14362 DUF4407: Domain of un 67.1 48 0.001 30.6 9.3 51 107-160 132-182 (301)
61 COG1729 Uncharacterized protei 66.6 39 0.00085 31.8 8.7 34 106-140 59-92 (262)
62 PF05377 FlaC_arch: Flagella a 66.5 22 0.00047 26.2 5.5 34 107-140 4-37 (55)
63 PRK02119 hypothetical protein; 66.3 33 0.00072 26.1 6.8 34 109-142 22-55 (73)
64 PRK00736 hypothetical protein; 66.1 33 0.00072 25.7 6.7 39 107-145 16-54 (68)
65 PRK04406 hypothetical protein; 66.1 33 0.00072 26.3 6.7 35 108-142 23-57 (75)
66 PF05308 Mito_fiss_reg: Mitoch 65.9 19 0.00041 33.6 6.4 23 119-141 117-139 (253)
67 KOG4196|consensus 65.1 7.5 0.00016 33.3 3.3 36 110-145 74-109 (135)
68 PF13870 DUF4201: Domain of un 64.7 13 0.00027 31.9 4.7 34 110-143 42-75 (177)
69 PHA00728 hypothetical protein 64.2 9.8 0.00021 32.6 3.8 24 110-133 5-28 (151)
70 PRK00295 hypothetical protein; 64.2 37 0.0008 25.4 6.6 38 107-144 16-53 (68)
71 PRK00404 tatB sec-independent 63.7 31 0.00067 29.8 6.8 35 155-189 92-126 (141)
72 PF04977 DivIC: Septum formati 62.9 19 0.00042 26.1 4.9 23 107-129 28-50 (80)
73 PF08826 DMPK_coil: DMPK coile 62.7 21 0.00046 26.6 5.0 33 108-140 16-48 (61)
74 PRK00846 hypothetical protein; 62.4 23 0.00049 27.6 5.3 36 107-142 17-52 (77)
75 TIGR02976 phageshock_pspB phag 62.3 14 0.0003 28.6 4.0 28 106-133 38-65 (75)
76 PF13334 DUF4094: Domain of un 62.3 25 0.00053 28.2 5.6 31 115-145 64-94 (95)
77 smart00340 HALZ homeobox assoc 62.1 11 0.00025 26.5 3.2 22 109-130 11-32 (44)
78 PF04420 CHD5: CHD5-like prote 61.7 13 0.00027 32.0 4.2 25 121-145 70-94 (161)
79 TIGR01834 PHA_synth_III_E poly 61.5 6.4 0.00014 38.0 2.6 33 100-132 286-318 (320)
80 PF07412 Geminin: Geminin; In 61.1 14 0.0003 33.6 4.5 31 112-142 120-150 (200)
81 KOG2264|consensus 61.0 31 0.00067 36.5 7.4 37 109-145 92-128 (907)
82 PRK04325 hypothetical protein; 61.0 31 0.00068 26.2 5.8 40 107-146 13-52 (74)
83 PF11382 DUF3186: Protein of u 60.6 15 0.00032 34.7 4.8 45 107-151 36-80 (308)
84 PF10883 DUF2681: Protein of u 60.3 25 0.00054 28.0 5.3 34 109-142 29-62 (87)
85 PRK14872 rod shape-determining 59.6 17 0.00037 35.3 5.0 28 110-137 57-84 (337)
86 PRK10803 tol-pal system protei 58.7 20 0.00044 33.0 5.2 36 107-142 58-93 (263)
87 PRK09343 prefoldin subunit bet 58.5 33 0.00072 28.2 6.0 40 107-146 75-114 (121)
88 COG3883 Uncharacterized protei 58.4 13 0.00028 35.1 4.0 43 106-148 69-111 (265)
89 PF15070 GOLGA2L5: Putative go 58.3 41 0.00089 35.1 7.9 55 107-161 474-530 (617)
90 PRK00846 hypothetical protein; 58.0 53 0.0012 25.6 6.6 37 109-145 26-62 (77)
91 PF10205 KLRAQ: Predicted coil 58.0 44 0.00095 27.5 6.4 39 107-145 37-75 (102)
92 KOG3705|consensus 57.9 68 0.0015 32.7 9.0 23 107-129 48-70 (580)
93 PF09302 XLF: XLF (XRCC4-like 57.1 22 0.00047 30.1 4.8 29 113-141 142-170 (171)
94 TIGR02894 DNA_bind_RsfA transc 57.0 27 0.00059 30.8 5.5 30 111-140 105-134 (161)
95 PF11221 Med21: Subunit 21 of 56.9 26 0.00056 29.5 5.2 37 107-143 101-137 (144)
96 COG5374 Uncharacterized conser 56.6 62 0.0013 29.3 7.7 28 57-84 47-74 (192)
97 COG5478 Predicted small integr 56.4 8.2 0.00018 33.4 2.1 27 21-47 18-45 (141)
98 PF12808 Mto2_bdg: Micro-tubul 56.3 19 0.0004 26.2 3.6 23 106-128 25-47 (52)
99 PHA01750 hypothetical protein 56.3 17 0.00036 28.1 3.5 30 116-145 41-70 (75)
100 PF04201 TPD52: Tumour protein 56.1 17 0.00037 32.1 4.0 26 117-142 29-54 (162)
101 PF04102 SlyX: SlyX; InterPro 55.7 36 0.00079 25.3 5.3 39 107-145 15-53 (69)
102 PRK05431 seryl-tRNA synthetase 55.0 55 0.0012 32.2 7.9 34 113-146 69-102 (425)
103 COG1382 GimC Prefoldin, chaper 54.8 42 0.00091 28.2 6.0 40 106-145 73-112 (119)
104 PF10186 Atg14: UV radiation r 54.5 20 0.00044 31.9 4.5 33 175-209 173-205 (302)
105 PF11853 DUF3373: Protein of u 54.5 9.9 0.00021 38.7 2.6 31 111-141 32-62 (489)
106 KOG4797|consensus 54.3 28 0.00061 29.2 4.8 26 113-138 63-88 (123)
107 PF09304 Cortex-I_coil: Cortex 54.1 38 0.00082 28.1 5.5 38 107-144 41-78 (107)
108 COG1792 MreC Cell shape-determ 53.6 25 0.00054 33.0 5.0 19 112-130 68-86 (284)
109 TIGR00414 serS seryl-tRNA synt 53.6 1E+02 0.0022 30.4 9.4 35 112-146 71-105 (418)
110 PF10883 DUF2681: Protein of u 53.3 31 0.00067 27.5 4.7 33 111-143 24-56 (87)
111 PF15290 Syntaphilin: Golgi-lo 53.3 22 0.00047 34.2 4.5 30 111-140 69-98 (305)
112 PRK04325 hypothetical protein; 52.4 78 0.0017 24.1 6.7 38 107-144 20-57 (74)
113 PF12718 Tropomyosin_1: Tropom 51.8 28 0.0006 29.5 4.6 42 107-148 25-66 (143)
114 PHA01750 hypothetical protein 51.4 44 0.00095 25.9 5.1 36 107-142 39-74 (75)
115 PF01920 Prefoldin_2: Prefoldi 51.1 52 0.0011 25.0 5.7 36 107-142 66-101 (106)
116 PF06295 DUF1043: Protein of u 50.9 59 0.0013 26.9 6.3 42 107-148 29-81 (128)
117 COG2433 Uncharacterized conser 50.4 30 0.00064 36.4 5.3 28 115-142 479-506 (652)
118 PF12329 TMF_DNA_bd: TATA elem 50.3 50 0.0011 25.1 5.3 33 109-141 39-71 (74)
119 PF10146 zf-C4H2: Zinc finger- 50.3 72 0.0016 29.3 7.3 37 106-142 63-99 (230)
120 KOG4010|consensus 50.2 39 0.00085 30.8 5.4 31 111-141 52-82 (208)
121 PF06156 DUF972: Protein of un 50.1 75 0.0016 25.9 6.6 30 107-136 12-41 (107)
122 PF06698 DUF1192: Protein of u 49.8 31 0.00068 25.6 4.0 28 106-133 24-51 (59)
123 PRK00888 ftsB cell division pr 49.8 39 0.00084 27.3 4.9 42 106-148 37-78 (105)
124 PF12017 Tnp_P_element: Transp 49.7 28 0.0006 32.1 4.6 19 231-249 161-179 (236)
125 KOG0971|consensus 49.6 2.5E+02 0.0054 31.5 12.0 107 121-240 1030-1142(1243)
126 PF09726 Macoilin: Transmembra 49.0 44 0.00095 35.4 6.4 34 112-145 624-657 (697)
127 cd00632 Prefoldin_beta Prefold 48.8 54 0.0012 25.9 5.6 36 107-142 67-102 (105)
128 cd00890 Prefoldin Prefoldin is 48.6 54 0.0012 25.9 5.6 36 107-142 91-126 (129)
129 PF08826 DMPK_coil: DMPK coile 48.5 70 0.0015 23.8 5.7 32 107-138 29-60 (61)
130 PF12725 DUF3810: Protein of u 48.5 1E+02 0.0023 29.3 8.4 41 193-234 225-269 (318)
131 PF06103 DUF948: Bacterial pro 48.4 52 0.0011 25.0 5.3 31 110-140 47-77 (90)
132 KOG3335|consensus 48.4 85 0.0018 28.3 7.2 65 109-175 105-169 (181)
133 PF07989 Microtub_assoc: Micro 48.3 26 0.00057 26.8 3.6 31 109-139 42-72 (75)
134 PF14389 Lzipper-MIP1: Leucine 48.1 54 0.0012 25.6 5.4 38 106-143 50-87 (88)
135 TIGR02209 ftsL_broad cell divi 48.0 56 0.0012 24.3 5.3 25 107-131 35-59 (85)
136 PRK11637 AmiB activator; Provi 47.8 27 0.00059 33.9 4.5 34 109-142 88-121 (428)
137 TIGR02894 DNA_bind_RsfA transc 47.4 38 0.00082 29.9 4.8 25 115-139 102-126 (161)
138 TIGR02209 ftsL_broad cell divi 47.1 66 0.0014 23.9 5.6 31 107-137 28-58 (85)
139 PF08776 VASP_tetra: VASP tetr 46.8 80 0.0017 22.0 5.3 25 119-143 13-38 (40)
140 PF05377 FlaC_arch: Flagella a 46.6 60 0.0013 23.9 5.0 31 107-137 11-41 (55)
141 PF05911 DUF869: Plant protein 46.4 39 0.00084 36.3 5.6 37 106-142 261-297 (769)
142 PF05812 Herpes_BLRF2: Herpesv 45.9 29 0.00063 29.2 3.7 23 106-128 6-28 (118)
143 COG5509 Uncharacterized small 45.8 30 0.00064 26.3 3.4 26 106-131 28-53 (65)
144 PF04791 LMBR1: LMBR1-like mem 45.1 48 0.001 32.2 5.7 17 61-77 172-188 (471)
145 PF10211 Ax_dynein_light: Axon 44.5 53 0.0011 29.0 5.4 36 107-142 124-159 (189)
146 PF10173 Mit_KHE1: Mitochondri 44.4 18 0.0004 32.0 2.5 13 195-207 158-172 (187)
147 TIGR03752 conj_TIGR03752 integ 44.2 40 0.00087 34.3 5.1 22 107-128 70-91 (472)
148 PF07106 TBPIP: Tat binding pr 44.2 41 0.00089 28.5 4.5 28 109-136 78-105 (169)
149 PF08172 CASP_C: CASP C termin 44.0 95 0.0021 28.8 7.1 34 107-140 3-36 (248)
150 PF04111 APG6: Autophagy prote 43.3 57 0.0012 31.0 5.7 25 112-136 66-90 (314)
151 PF06720 Phi-29_GP16_7: Bacter 43.3 7.9 0.00017 32.7 0.0 31 115-145 32-62 (130)
152 PF11336 DUF3138: Protein of u 43.2 52 0.0011 33.6 5.6 23 110-132 25-47 (514)
153 TIGR02338 gimC_beta prefoldin, 43.2 73 0.0016 25.4 5.6 36 107-142 71-106 (110)
154 TIGR01242 26Sp45 26S proteasom 43.1 57 0.0012 30.8 5.7 35 108-142 4-38 (364)
155 PRK04654 sec-independent trans 42.8 28 0.00062 32.0 3.5 37 109-145 53-89 (214)
156 PF04728 LPP: Lipoprotein leuc 42.6 78 0.0017 23.4 5.1 36 107-142 14-49 (56)
157 PRK11637 AmiB activator; Provi 42.3 14 0.00031 35.8 1.6 38 107-144 93-130 (428)
158 PF07716 bZIP_2: Basic region 42.0 83 0.0018 22.0 5.1 29 110-138 25-53 (54)
159 PRK14127 cell division protein 41.7 1.1E+02 0.0024 25.2 6.5 41 106-146 26-66 (109)
160 PF05164 ZapA: Cell division p 41.6 88 0.0019 23.2 5.5 33 107-140 56-88 (89)
161 PF07047 OPA3: Optic atrophy 3 41.5 35 0.00075 28.5 3.6 25 114-138 109-133 (134)
162 KOG1151|consensus 41.2 35 0.00076 35.4 4.2 35 108-142 245-279 (775)
163 KOG4010|consensus 41.2 35 0.00076 31.1 3.7 31 115-145 42-72 (208)
164 PRK05759 F0F1 ATP synthase sub 41.2 68 0.0015 26.5 5.3 14 68-81 21-34 (156)
165 PRK10884 SH3 domain-containing 41.2 65 0.0014 29.1 5.5 14 129-142 137-150 (206)
166 PRK13455 F0F1 ATP synthase sub 41.1 90 0.0019 26.9 6.2 13 60-72 34-46 (184)
167 PF07989 Microtub_assoc: Micro 41.0 89 0.0019 23.9 5.5 36 110-145 36-71 (75)
168 TIGR03752 conj_TIGR03752 integ 40.9 97 0.0021 31.7 7.2 18 107-124 77-94 (472)
169 smart00338 BRLZ basic region l 40.9 90 0.0019 22.4 5.3 37 109-145 25-61 (65)
170 PF05700 BCAS2: Breast carcino 40.8 69 0.0015 28.7 5.6 40 107-146 179-218 (221)
171 COG4839 FtsL Protein required 40.7 64 0.0014 27.3 5.0 34 109-142 59-92 (120)
172 PF01763 Herpes_UL6: Herpesvir 40.6 44 0.00096 34.7 4.8 31 109-139 376-406 (557)
173 PF11853 DUF3373: Protein of u 40.5 22 0.00049 36.2 2.7 35 110-145 25-59 (489)
174 PF00430 ATP-synt_B: ATP synth 40.5 1E+02 0.0022 24.3 6.1 19 68-86 16-34 (132)
175 PRK08475 F0F1 ATP synthase sub 40.4 1.1E+02 0.0023 26.3 6.5 14 115-128 72-85 (167)
176 PF13851 GAS: Growth-arrest sp 40.3 65 0.0014 28.7 5.3 36 107-142 45-80 (201)
177 cd00584 Prefoldin_alpha Prefol 40.2 84 0.0018 25.3 5.6 36 107-142 91-126 (129)
178 PF11461 RILP: Rab interacting 40.2 60 0.0013 24.3 4.2 35 110-144 3-37 (60)
179 PF04111 APG6: Autophagy prote 39.9 66 0.0014 30.6 5.6 34 107-140 47-80 (314)
180 TIGR00293 prefoldin, archaeal 39.8 87 0.0019 25.1 5.6 35 107-141 90-124 (126)
181 PTZ00009 heat shock 70 kDa pro 39.5 85 0.0018 32.5 6.7 37 120-156 592-628 (653)
182 PF05103 DivIVA: DivIVA protei 39.4 14 0.0003 29.6 0.8 36 107-142 22-57 (131)
183 PF13600 DUF4140: N-terminal d 39.3 70 0.0015 24.8 4.8 35 107-141 67-101 (104)
184 PF06005 DUF904: Protein of un 39.3 58 0.0013 24.8 4.2 12 126-137 41-52 (72)
185 PHA03385 IX capsid protein IX, 38.8 84 0.0018 27.0 5.4 37 107-143 97-133 (135)
186 PF02183 HALZ: Homeobox associ 38.7 68 0.0015 22.4 4.1 27 107-133 16-42 (45)
187 COG4345 Uncharacterized protei 38.6 69 0.0015 28.7 5.1 40 106-145 121-160 (181)
188 PF08172 CASP_C: CASP C termin 38.3 1.1E+02 0.0023 28.4 6.6 36 107-142 83-118 (248)
189 TIGR00219 mreC rod shape-deter 38.3 72 0.0016 29.8 5.5 38 107-144 70-111 (283)
190 KOG3990|consensus 38.3 57 0.0012 31.2 4.8 38 107-144 222-259 (305)
191 PF10186 Atg14: UV radiation r 38.1 53 0.0011 29.3 4.4 36 107-142 67-102 (302)
192 PF02996 Prefoldin: Prefoldin 38.0 78 0.0017 24.8 4.9 36 107-142 81-116 (120)
193 PF07106 TBPIP: Tat binding pr 37.9 61 0.0013 27.5 4.6 17 107-123 83-99 (169)
194 PLN02678 seryl-tRNA synthetase 37.8 1.3E+02 0.0028 30.3 7.5 34 113-146 74-107 (448)
195 PF10226 DUF2216: Uncharacteri 37.6 88 0.0019 28.5 5.7 24 115-138 106-129 (195)
196 COG2919 Septum formation initi 37.3 67 0.0014 26.2 4.6 32 108-139 55-86 (117)
197 PRK13453 F0F1 ATP synthase sub 37.1 1E+02 0.0022 26.5 5.9 14 67-80 34-47 (173)
198 PLN02320 seryl-tRNA synthetase 36.8 2.3E+02 0.005 29.1 9.2 33 114-146 134-166 (502)
199 KOG1510|consensus 36.7 78 0.0017 27.4 5.0 36 107-142 88-123 (139)
200 PF12292 DUF3624: Protein of u 36.4 90 0.002 24.5 4.9 47 27-76 21-68 (77)
201 PF12709 Kinetocho_Slk19: Cent 36.4 93 0.002 24.9 5.1 26 109-134 48-73 (87)
202 PF04568 IATP: Mitochondrial A 36.2 75 0.0016 25.9 4.6 22 119-140 74-99 (100)
203 PF06305 DUF1049: Protein of u 35.9 50 0.0011 23.6 3.3 15 114-128 52-66 (68)
204 PF04632 FUSC: Fusaric acid re 35.9 2.7E+02 0.0058 28.0 9.5 59 199-258 295-363 (650)
205 PRK03947 prefoldin subunit alp 35.8 1.1E+02 0.0023 25.2 5.6 37 107-143 98-134 (140)
206 PF09726 Macoilin: Transmembra 35.4 65 0.0014 34.2 5.2 34 108-141 543-576 (697)
207 PF04568 IATP: Mitochondrial A 35.2 1.1E+02 0.0024 24.9 5.4 28 115-142 67-94 (100)
208 PF06698 DUF1192: Protein of u 35.0 53 0.0012 24.4 3.3 25 119-143 23-47 (59)
209 PF05837 CENP-H: Centromere pr 34.9 1.2E+02 0.0025 24.4 5.5 39 107-145 14-52 (106)
210 PF01166 TSC22: TSC-22/dip/bun 34.7 40 0.00087 25.3 2.6 33 114-146 18-50 (59)
211 PF06156 DUF972: Protein of un 34.7 94 0.002 25.4 5.0 33 106-138 25-57 (107)
212 PF08537 NBP1: Fungal Nap bind 34.4 74 0.0016 31.0 5.0 36 107-142 172-207 (323)
213 PF09457 RBD-FIP: FIP domain ; 34.4 1.6E+02 0.0034 21.0 5.5 42 107-148 4-45 (48)
214 KOG4797|consensus 34.3 83 0.0018 26.5 4.6 42 107-148 64-105 (123)
215 PF09789 DUF2353: Uncharacteri 34.1 90 0.002 30.3 5.5 39 107-145 76-114 (319)
216 PF04508 Pox_A_type_inc: Viral 34.0 51 0.0011 20.4 2.5 19 118-136 2-20 (23)
217 PRK10722 hypothetical protein; 34.0 1.5E+02 0.0032 28.0 6.7 34 109-142 164-201 (247)
218 COG4420 Predicted membrane pro 33.9 2.8E+02 0.006 25.3 8.2 38 109-146 133-170 (191)
219 KOG0837|consensus 33.8 26 0.00056 33.3 1.8 39 110-148 227-265 (279)
220 KOG4343|consensus 33.7 86 0.0019 32.9 5.5 32 107-138 306-337 (655)
221 PF06210 DUF1003: Protein of u 33.6 2.7E+02 0.0058 22.8 9.8 27 115-141 78-104 (108)
222 PRK11239 hypothetical protein; 33.6 71 0.0015 29.5 4.5 31 111-141 184-214 (215)
223 KOG2577|consensus 33.4 75 0.0016 31.3 4.9 36 107-142 141-176 (354)
224 PF14802 TMEM192: TMEM192 fami 33.3 3.9E+02 0.0085 24.7 11.2 17 112-128 218-234 (236)
225 KOG3533|consensus 32.9 63 0.0014 37.6 4.7 46 97-142 2656-2701(2706)
226 PF00170 bZIP_1: bZIP transcri 32.9 1.5E+02 0.0033 21.2 5.4 34 109-142 25-58 (64)
227 PF10498 IFT57: Intra-flagella 32.8 1.1E+02 0.0024 29.8 6.0 40 107-146 284-323 (359)
228 PF04880 NUDE_C: NUDE protein, 32.6 74 0.0016 28.1 4.3 28 114-142 28-55 (166)
229 PF15290 Syntaphilin: Golgi-lo 32.2 1.3E+02 0.0029 29.0 6.2 22 121-142 121-142 (305)
230 KOG2264|consensus 32.2 77 0.0017 33.7 5.0 31 112-142 109-139 (907)
231 PF14197 Cep57_CLD_2: Centroso 32.1 1.1E+02 0.0025 23.0 4.7 24 112-135 42-65 (69)
232 TIGR02231 conserved hypothetic 32.1 99 0.0021 30.9 5.7 36 107-142 135-170 (525)
233 PRK15422 septal ring assembly 32.0 1.5E+02 0.0032 23.5 5.4 33 107-139 8-40 (79)
234 PF04380 BMFP: Membrane fusoge 31.9 90 0.002 23.9 4.2 29 110-138 50-78 (79)
235 PF11559 ADIP: Afadin- and alp 31.7 96 0.0021 25.7 4.7 32 109-140 58-89 (151)
236 PF00992 Troponin: Troponin; 31.6 70 0.0015 26.9 3.9 39 107-145 54-92 (132)
237 PRK09039 hypothetical protein; 31.5 65 0.0014 31.0 4.1 34 110-143 151-184 (343)
238 PF13094 CENP-Q: CENP-Q, a CEN 31.4 1.5E+02 0.0031 25.0 5.8 40 107-146 45-84 (160)
239 PTZ00420 coronin; Provisional 31.2 1.1E+02 0.0023 31.8 5.8 31 107-137 416-447 (568)
240 PF08286 Spc24: Spc24 subunit 31.1 16 0.00035 29.6 0.0 30 113-142 16-45 (118)
241 PLN03193 beta-1,3-galactosyltr 31.1 1.8E+02 0.0039 29.2 7.2 35 111-145 79-113 (408)
242 PF11315 Med30: Mediator compl 31.0 1E+02 0.0022 26.8 4.9 34 109-142 103-136 (150)
243 PF10856 DUF2678: Protein of u 30.9 41 0.00088 28.4 2.3 46 38-91 45-91 (118)
244 PRK03992 proteasome-activating 30.7 1.1E+02 0.0024 29.5 5.6 36 107-142 12-47 (389)
245 PRK10642 proline/glycine betai 30.7 75 0.0016 30.6 4.5 22 20-41 374-396 (490)
246 PF04120 Iron_permease: Low af 30.6 1.2E+02 0.0026 25.8 5.1 21 22-42 14-35 (132)
247 PF15456 Uds1: Up-regulated Du 30.4 82 0.0018 26.4 4.1 27 116-142 21-47 (124)
248 PF12329 TMF_DNA_bd: TATA elem 30.3 1.1E+02 0.0024 23.2 4.4 34 109-142 32-65 (74)
249 PF14193 DUF4315: Domain of un 30.2 1.2E+02 0.0027 23.8 4.8 23 115-137 6-28 (83)
250 PF13942 Lipoprotein_20: YfhG 30.2 1.1E+02 0.0025 27.4 5.1 39 107-145 127-168 (179)
251 cd04776 HTH_GnyR Helix-Turn-He 30.0 1.4E+02 0.003 24.2 5.3 30 111-140 81-110 (118)
252 PRK14153 heat shock protein Gr 30.0 89 0.0019 28.1 4.5 32 111-142 41-72 (194)
253 PF02403 Seryl_tRNA_N: Seryl-t 29.6 1.2E+02 0.0026 23.6 4.8 31 114-144 71-101 (108)
254 PF07061 Swi5: Swi5; InterPro 29.6 87 0.0019 24.5 3.9 27 114-140 4-30 (83)
255 PF01920 Prefoldin_2: Prefoldi 29.6 99 0.0021 23.5 4.2 40 107-146 59-98 (106)
256 PF07407 Seadorna_VP6: Seadorn 29.5 93 0.002 30.9 4.8 28 107-134 36-63 (420)
257 PLN02943 aminoacyl-tRNA ligase 29.4 51 0.0011 35.9 3.4 33 112-144 884-916 (958)
258 KOG2635|consensus 29.2 1.9E+02 0.0041 29.7 7.0 36 105-140 136-173 (512)
259 PRK14011 prefoldin subunit alp 29.1 1.5E+02 0.0032 25.4 5.5 40 107-146 92-131 (144)
260 PF04576 Zein-binding: Zein-bi 29.0 1.4E+02 0.003 24.3 5.0 34 107-140 60-93 (94)
261 PRK14160 heat shock protein Gr 29.0 1.1E+02 0.0025 27.8 5.0 30 111-140 55-84 (211)
262 PF14775 NYD-SP28_assoc: Sperm 28.9 87 0.0019 23.0 3.5 32 110-141 26-57 (60)
263 PTZ00454 26S protease regulato 28.9 81 0.0018 30.9 4.4 34 109-142 28-61 (398)
264 PF08614 ATG16: Autophagy prot 28.8 1.4E+02 0.0031 26.0 5.5 34 107-140 113-146 (194)
265 PF03938 OmpH: Outer membrane 28.8 1.2E+02 0.0026 24.9 4.8 35 111-145 37-71 (158)
266 PF10779 XhlA: Haemolysin XhlA 28.6 1.9E+02 0.0041 21.4 5.4 27 111-137 21-47 (71)
267 PF11594 Med28: Mediator compl 28.6 1E+02 0.0022 25.6 4.2 27 115-141 40-66 (106)
268 PF03962 Mnd1: Mnd1 family; I 28.5 1.2E+02 0.0026 26.8 5.0 36 110-145 62-97 (188)
269 PF14775 NYD-SP28_assoc: Sperm 28.4 1.7E+02 0.0038 21.4 5.1 22 107-128 37-58 (60)
270 PRK13729 conjugal transfer pil 28.4 1.5E+02 0.0032 30.4 6.1 39 107-145 73-118 (475)
271 PF11577 NEMO: NF-kappa-B esse 28.3 1.2E+02 0.0026 23.1 4.3 25 107-131 3-27 (68)
272 PF14723 SSFA2_C: Sperm-specif 28.2 1.6E+02 0.0036 26.4 5.7 36 107-142 142-177 (179)
273 PF10018 Med4: Vitamin-D-recep 28.2 85 0.0018 27.4 4.0 31 112-142 24-54 (188)
274 PRK13454 F0F1 ATP synthase sub 28.1 1.1E+02 0.0024 26.6 4.7 13 69-81 49-61 (181)
275 PF05308 Mito_fiss_reg: Mitoch 28.1 1.8E+02 0.0039 27.1 6.3 37 107-147 119-155 (253)
276 KOG3583|consensus 28.1 1.7E+02 0.0036 27.7 5.9 40 107-146 115-159 (279)
277 PRK09343 prefoldin subunit bet 28.0 1.6E+02 0.0034 24.2 5.3 35 107-141 82-116 (121)
278 PF06810 Phage_GP20: Phage min 28.0 1.3E+02 0.0027 25.9 4.9 28 107-134 38-68 (155)
279 PRK06342 transcription elongat 27.9 1.5E+02 0.0033 25.6 5.4 39 107-145 38-85 (160)
280 PTZ00454 26S protease regulato 27.9 1.3E+02 0.0028 29.5 5.6 31 107-137 33-63 (398)
281 PF09789 DUF2353: Uncharacteri 27.7 1.4E+02 0.003 29.0 5.6 34 112-145 191-224 (319)
282 PF10805 DUF2730: Protein of u 27.6 1.3E+02 0.0028 24.1 4.7 34 107-140 53-88 (106)
283 PF09849 DUF2076: Uncharacteri 27.5 2.3E+02 0.005 26.4 6.9 27 115-141 46-72 (247)
284 PRK09546 zntB zinc transporter 27.4 1.6E+02 0.0034 27.4 5.9 19 27-45 263-281 (324)
285 PF13118 DUF3972: Protein of u 27.3 1.5E+02 0.0033 25.2 5.2 36 107-142 82-124 (126)
286 PF08317 Spc7: Spc7 kinetochor 27.2 1.2E+02 0.0027 28.6 5.2 22 121-142 241-262 (325)
287 PRK05771 V-type ATP synthase s 27.1 1.2E+02 0.0026 31.2 5.5 33 109-141 92-124 (646)
288 PF13870 DUF4201: Domain of un 27.0 1.3E+02 0.0028 25.7 4.9 36 107-142 81-116 (177)
289 PF04849 HAP1_N: HAP1 N-termin 27.0 96 0.0021 30.0 4.4 31 107-137 164-194 (306)
290 PRK14872 rod shape-determining 26.9 1.2E+02 0.0026 29.6 5.1 24 107-130 61-84 (337)
291 PRK03947 prefoldin subunit alp 26.6 1.5E+02 0.0033 24.2 5.0 34 109-142 5-38 (140)
292 PF13851 GAS: Growth-arrest sp 26.6 1.6E+02 0.0034 26.2 5.5 36 107-142 97-132 (201)
293 PF11932 DUF3450: Protein of u 26.6 1.6E+02 0.0034 26.6 5.6 32 111-142 57-88 (251)
294 PF01544 CorA: CorA-like Mg2+ 26.6 1.2E+02 0.0026 26.6 4.7 20 26-45 232-251 (292)
295 PRK05729 valS valyl-tRNA synth 26.5 71 0.0015 34.3 3.8 31 114-144 808-838 (874)
296 PRK01203 prefoldin subunit alp 26.5 1.7E+02 0.0036 24.9 5.3 36 107-142 84-119 (130)
297 COG3825 Uncharacterized protei 26.3 1.1E+02 0.0024 30.2 4.7 28 119-146 94-124 (393)
298 cd00225 API3 Ascaris pepsin in 26.2 1.5E+02 0.0032 26.2 5.0 57 107-174 34-91 (159)
299 COG1422 Predicted membrane pro 26.2 85 0.0018 28.7 3.7 42 107-148 83-125 (201)
300 PF11471 Sugarporin_N: Maltopo 26.1 1.4E+02 0.003 22.0 4.2 30 107-136 29-58 (60)
301 KOG2391|consensus 26.0 96 0.0021 30.7 4.2 16 206-221 334-349 (365)
302 PF03980 Nnf1: Nnf1 ; InterPr 26.0 81 0.0018 24.9 3.2 28 115-142 78-105 (109)
303 PRK09039 hypothetical protein; 25.9 1.4E+02 0.0031 28.6 5.4 31 112-142 139-169 (343)
304 PF10805 DUF2730: Protein of u 25.9 1.6E+02 0.0035 23.6 4.9 32 109-140 64-95 (106)
305 PF12718 Tropomyosin_1: Tropom 25.9 1.6E+02 0.0034 24.9 5.1 36 107-142 32-67 (143)
306 PF05769 DUF837: Protein of un 25.8 76 0.0016 28.1 3.3 21 107-127 157-177 (181)
307 PRK14141 heat shock protein Gr 25.4 1.9E+02 0.0042 26.3 5.9 39 107-145 35-73 (209)
308 KOG2933|consensus 25.3 1.6E+02 0.0034 29.0 5.5 100 148-249 35-151 (334)
309 PF10779 XhlA: Haemolysin XhlA 25.2 2.3E+02 0.005 21.0 5.4 35 108-142 11-45 (71)
310 PRK07353 F0F1 ATP synthase sub 25.2 1.8E+02 0.004 23.5 5.3 13 68-80 22-34 (140)
311 PRK13169 DNA replication intia 25.1 1.8E+02 0.0039 24.0 5.1 31 107-137 12-42 (110)
312 PF10376 Mei5: Double-strand r 24.9 1.2E+02 0.0025 27.9 4.4 32 107-138 128-159 (221)
313 PF05769 DUF837: Protein of un 24.9 1E+02 0.0023 27.2 4.0 37 106-142 66-102 (181)
314 PF09006 Surfac_D-trimer: Lung 24.8 1E+02 0.0022 22.1 3.1 26 120-145 2-27 (46)
315 PRK12585 putative monovalent c 24.6 5.1E+02 0.011 23.7 8.3 20 107-126 123-142 (197)
316 PRK13460 F0F1 ATP synthase sub 24.6 1.9E+02 0.0042 24.6 5.5 11 70-80 35-45 (173)
317 PF03955 Adeno_PIX: Adenovirus 24.6 43 0.00093 27.9 1.4 36 107-142 73-108 (109)
318 PF04880 NUDE_C: NUDE protein, 24.4 39 0.00084 29.8 1.2 25 107-131 4-28 (166)
319 PF01025 GrpE: GrpE; InterPro 24.3 69 0.0015 26.7 2.6 37 109-145 17-53 (165)
320 KOG0614|consensus 24.3 2.9E+02 0.0063 29.4 7.4 39 107-145 35-73 (732)
321 PF10481 CENP-F_N: Cenp-F N-te 24.3 2.3E+02 0.0049 27.5 6.3 45 107-151 92-136 (307)
322 PF15254 CCDC14: Coiled-coil d 24.3 60 0.0013 35.2 2.7 38 111-148 516-556 (861)
323 PRK14472 F0F1 ATP synthase sub 24.2 2E+02 0.0044 24.5 5.6 13 116-128 69-81 (175)
324 PF05557 MAD: Mitotic checkpoi 24.0 1.6E+02 0.0036 30.7 5.8 37 107-143 500-536 (722)
325 KOG4552|consensus 24.0 1.6E+02 0.0035 27.6 5.1 26 115-140 72-97 (272)
326 PRK05892 nucleoside diphosphat 23.9 2E+02 0.0044 24.7 5.5 23 123-145 53-75 (158)
327 PF15444 TMEM247: Transmembran 23.8 1.6E+02 0.0035 26.9 5.0 36 32-70 176-211 (218)
328 PF05812 Herpes_BLRF2: Herpesv 23.8 94 0.002 26.2 3.3 48 119-189 5-52 (118)
329 PF12325 TMF_TATA_bd: TATA ele 23.8 2.6E+02 0.0056 23.3 5.9 34 107-140 20-53 (120)
330 TIGR01461 greB transcription e 23.6 1.8E+02 0.004 24.9 5.1 28 118-145 43-73 (156)
331 PF09457 RBD-FIP: FIP domain ; 23.6 2.3E+02 0.0049 20.2 4.7 29 114-142 4-32 (48)
332 PF06216 RTBV_P46: Rice tungro 23.5 1.5E+02 0.0032 28.6 4.9 29 118-146 79-107 (389)
333 PF09032 Siah-Interact_N: Siah 23.5 2.2E+02 0.0047 22.3 5.0 37 109-145 2-47 (79)
334 TIGR02977 phageshock_pspA phag 23.4 1.6E+02 0.0034 26.3 4.9 36 107-142 96-131 (219)
335 PF04394 DUF536: Protein of un 23.4 80 0.0017 22.3 2.4 16 125-140 4-19 (45)
336 PF12709 Kinetocho_Slk19: Cent 23.3 2.4E+02 0.0052 22.6 5.3 22 107-128 53-74 (87)
337 PF14282 FlxA: FlxA-like prote 23.2 2.8E+02 0.006 22.2 5.8 12 129-140 56-67 (106)
338 PF11382 DUF3186: Protein of u 23.1 1.1E+02 0.0023 29.0 3.9 36 107-142 43-78 (308)
339 cd00632 Prefoldin_beta Prefold 23.0 1.5E+02 0.0032 23.4 4.1 37 109-145 62-98 (105)
340 PF12097 DUF3573: Protein of u 22.9 1.8E+02 0.0039 29.0 5.4 21 119-139 44-64 (383)
341 PF13600 DUF4140: N-terminal d 22.9 1.7E+02 0.0036 22.7 4.4 32 106-137 73-104 (104)
342 COG5178 PRP8 U5 snRNP spliceos 22.8 48 0.001 38.0 1.7 51 155-205 9-62 (2365)
343 PF01166 TSC22: TSC-22/dip/bun 22.8 2.3E+02 0.0049 21.3 4.8 24 115-138 12-35 (59)
344 PF14992 TMCO5: TMCO5 family 22.8 1.6E+02 0.0035 28.2 5.0 35 107-141 8-42 (280)
345 PF06216 RTBV_P46: Rice tungro 22.7 3.2E+02 0.007 26.4 6.9 34 107-140 82-115 (389)
346 PF03904 DUF334: Domain of unk 22.7 68 0.0015 29.9 2.4 39 107-145 40-78 (230)
347 PF11336 DUF3138: Protein of u 22.6 1.1E+02 0.0024 31.3 4.0 30 116-145 24-53 (514)
348 PF07544 Med9: RNA polymerase 22.5 1.9E+02 0.0041 22.2 4.6 25 116-140 58-82 (83)
349 PF06645 SPC12: Microsomal sig 22.4 2.1E+02 0.0045 21.9 4.7 48 31-84 17-64 (76)
350 PF06810 Phage_GP20: Phage min 22.4 1.9E+02 0.0041 24.9 5.0 29 110-138 20-48 (155)
351 PF14772 NYD-SP28: Sperm tail 22.3 2.3E+02 0.0051 22.2 5.2 34 113-146 58-91 (104)
352 PTZ00419 valyl-tRNA synthetase 22.3 97 0.0021 33.8 3.9 32 113-144 925-956 (995)
353 PF10152 DUF2360: Predicted co 22.1 4.7E+02 0.01 22.2 7.3 104 102-205 13-123 (148)
354 PF14335 DUF4391: Domain of un 22.1 1.8E+02 0.0039 25.9 5.0 24 120-143 178-201 (221)
355 COG3074 Uncharacterized protei 22.1 1.9E+02 0.004 22.7 4.3 13 115-127 30-42 (79)
356 PF02828 L27: L27 domain; Int 22.0 1E+02 0.0022 21.7 2.7 20 208-227 22-41 (56)
357 COG4026 Uncharacterized protei 22.0 1.7E+02 0.0038 27.7 4.9 8 29-36 35-42 (290)
358 PRK10803 tol-pal system protei 21.9 5.1E+02 0.011 23.8 8.0 36 107-142 65-100 (263)
359 KOG3088|consensus 21.9 1.5E+02 0.0033 28.8 4.6 27 116-142 66-92 (313)
360 PF05983 Med7: MED7 protein; 21.8 60 0.0013 28.1 1.8 26 120-145 134-159 (162)
361 PF06632 XRCC4: DNA double-str 21.8 1.9E+02 0.0042 28.1 5.4 17 126-142 189-205 (342)
362 PF05103 DivIVA: DivIVA protei 21.8 80 0.0017 25.1 2.4 37 106-142 28-64 (131)
363 PF05266 DUF724: Protein of un 21.7 1.9E+02 0.0042 25.7 5.0 33 107-139 114-146 (190)
364 PF06785 UPF0242: Uncharacteri 21.7 1.6E+02 0.0034 29.3 4.8 43 100-142 124-173 (401)
365 PF14818 DUF4482: Domain of un 21.7 5.3E+02 0.011 22.4 7.5 38 107-144 17-54 (141)
366 PF03357 Snf7: Snf7; InterPro 21.6 1.7E+02 0.0037 23.9 4.4 35 111-145 2-36 (171)
367 cd01109 HTH_YyaN Helix-Turn-He 21.6 2.5E+02 0.0054 22.1 5.2 31 110-140 79-109 (113)
368 PRK14151 heat shock protein Gr 21.6 2E+02 0.0044 25.3 5.1 40 106-145 23-62 (176)
369 COG5002 VicK Signal transducti 21.6 2.3E+02 0.0051 28.6 6.0 36 107-142 80-115 (459)
370 KOG0709|consensus 21.5 63 0.0014 33.0 2.1 36 107-142 276-311 (472)
371 PF02994 Transposase_22: L1 tr 21.2 2.2E+02 0.0048 27.7 5.7 37 106-142 147-183 (370)
372 PF08317 Spc7: Spc7 kinetochor 21.2 2.3E+02 0.0049 26.8 5.7 32 109-140 215-246 (325)
373 PRK13461 F0F1 ATP synthase sub 21.2 2.7E+02 0.0057 23.3 5.6 9 72-80 26-34 (159)
374 PRK15178 Vi polysaccharide exp 21.2 1.7E+02 0.0037 29.5 5.1 42 107-148 290-338 (434)
375 PHA03006 hypothetical protein; 21.1 1.2E+02 0.0025 29.3 3.7 36 107-142 154-191 (323)
376 PF15188 CCDC-167: Coiled-coil 21.1 1.6E+02 0.0034 23.4 3.9 30 109-138 35-64 (85)
377 PF06273 eIF-4B: Plant specifi 21.1 3.9E+02 0.0085 27.6 7.6 26 120-145 399-424 (492)
378 KOG4603|consensus 21.1 2E+02 0.0043 26.2 4.9 47 106-156 103-151 (201)
379 PF06785 UPF0242: Uncharacteri 21.1 1.6E+02 0.0034 29.3 4.6 13 61-73 45-57 (401)
380 KOG4370|consensus 21.0 2.5E+02 0.0054 28.8 6.1 36 107-142 410-452 (514)
381 PF12761 End3: Actin cytoskele 20.9 1.3E+02 0.0028 27.4 3.8 26 118-143 97-122 (195)
382 PF10112 Halogen_Hydrol: 5-bro 20.9 3.5E+02 0.0076 23.4 6.5 8 190-197 150-157 (199)
383 COG4467 Regulator of replicati 20.9 2.8E+02 0.0061 23.3 5.4 32 106-137 11-42 (114)
384 KOG1962|consensus 20.7 1.4E+02 0.0031 27.4 4.1 22 116-137 178-199 (216)
385 PF08581 Tup_N: Tup N-terminal 20.6 2.7E+02 0.0059 21.6 5.1 33 109-144 45-77 (79)
386 TIGR03689 pup_AAA proteasome A 20.6 2E+02 0.0044 29.4 5.6 36 107-142 5-40 (512)
387 TIGR00422 valS valyl-tRNA synt 20.6 1.1E+02 0.0024 32.6 3.9 34 111-144 810-843 (861)
388 PRK14155 heat shock protein Gr 20.5 2E+02 0.0043 26.1 4.9 39 107-145 17-55 (208)
389 KOG0995|consensus 20.5 1.9E+02 0.0042 30.3 5.3 36 107-142 284-319 (581)
390 KOG4815|consensus 20.4 4.6E+02 0.01 26.2 7.6 38 107-144 327-364 (511)
391 PF09766 FimP: Fms-interacting 20.4 2.2E+02 0.0047 27.5 5.5 36 107-142 105-140 (355)
392 PF07544 Med9: RNA polymerase 20.3 1.8E+02 0.004 22.3 4.1 14 128-141 56-69 (83)
393 COG1730 GIM5 Predicted prefold 20.3 2.8E+02 0.0061 23.9 5.6 36 107-142 98-133 (145)
394 PF11559 ADIP: Afadin- and alp 20.3 1.7E+02 0.0036 24.3 4.2 19 115-133 71-89 (151)
395 PF09340 NuA4: Histone acetylt 20.3 2.3E+02 0.005 21.8 4.6 32 111-142 3-34 (80)
396 PF04912 Dynamitin: Dynamitin 20.3 2E+02 0.0043 27.8 5.2 37 107-143 91-144 (388)
397 PF03961 DUF342: Protein of un 20.3 2.2E+02 0.0047 28.0 5.6 37 107-143 372-408 (451)
398 PF12017 Tnp_P_element: Transp 20.2 1.7E+02 0.0037 27.0 4.5 26 115-140 16-41 (236)
No 1
>KOG1055|consensus
Probab=99.95 E-value=2.4e-29 Score=254.36 Aligned_cols=144 Identities=47% Similarity=0.786 Sum_probs=127.4
Q ss_pred CeeeEEEEEeeecCCCCCCccchhhhHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHHHHhhhhceeeee
Q psy3590 1 MFGAFLAWETRHVSIPALNDSKYVGMSVYNVVLMCIMGAAISFVISDKQDASFVIISLFILFCTTATLCLVFVPKIVELK 80 (258)
Q Consensus 1 LfG~FLAweTR~V~i~~fNESK~Ig~SVYnV~VlslI~vPVs~vl~s~pd~~f~lisl~IifcTT~tL~LLFVPKv~~i~ 80 (258)
+||+||||+||+|+++++|||||||++||||+++|++..|+.+++.+++|+.|++++++|+||+|++||++|+||++.+.
T Consensus 653 vfG~FLA~ETR~V~i~~INDskyiG~svyNVfv~cli~a~V~~v~~sq~da~Fa~~sl~Iifc~t~tl~lifvpKv~~l~ 732 (865)
T KOG1055|consen 653 LFGCFLAWETRNVSIPAINDSKYIGMSVYNVFVMCLITAPVTLVLSSQKDAAFAFVSLFIIFCSTITLCLVFVPKLRHLI 732 (865)
T ss_pred HHhHHhhhhccccchhhhccccccceeeeeeeEEeeecCceeeeeecccccceehhhhHHHhhhhhhhheecchhheeee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhcccCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 81 RNPQGSIDKRIRATLRPMSKTRRDS-SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 81 ~~P~~~~d~r~r~t~~~~S~t~rss-~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
++|+...+.+.... +.++++. ..+||+.+.|+.||+++|+.|+|||++|.+++++|..+.++..
T Consensus 733 t~p~~~se~q~n~~----~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~~~~~~~ 797 (865)
T KOG1055|consen 733 TNPQWASEAQRNMK----TGPSSSVNENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQPRPRKTI 797 (865)
T ss_pred cCchhhhhhhhccc----cCcccccchhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhccccccccc
Confidence 99998655543222 2221222 3677799999999999999999999999999999998776543
No 2
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.52 E-value=4.5e-15 Score=128.66 Aligned_cols=76 Identities=38% Similarity=0.751 Sum_probs=70.8
Q ss_pred CeeeEEEEEeeecCCCCCCccchhhhHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHHHHhhhhceeee
Q psy3590 1 MFGAFLAWETRHVSIPALNDSKYVGMSVYNVVLMCIMGAAISFVISDKQDASFVIISLFILFCTTATLCLVFVPKIVEL 79 (258)
Q Consensus 1 LfG~FLAweTR~V~i~~fNESK~Ig~SVYnV~VlslI~vPVs~vl~s~pd~~f~lisl~IifcTT~tL~LLFVPKv~~i 79 (258)
++|+++||+||+++ +++||||+|++++|++++++++.+|++++.++. .++.+.++++++|++++++++|+||++.+
T Consensus 163 ~~~~~la~~~R~~~-~~~nEa~~I~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~lF~PKi~~i 238 (238)
T PF00003_consen 163 LIGFFLAFKTRNVP-SNFNEARYIAFAIYNITIIWIIFIPLYFVTDGE--WRFLIISFGILLCATVTLGLLFIPKIYII 238 (238)
T ss_pred HHHHHHHHhhCCCC-cccchhhhHhHhHHHHHHHHHHhhhheeeccch--HHHHHHHHHHHHHHHHHHHHhhhheEEeC
Confidence 36899999999997 999999999999999999999999998888765 78999999999999999999999999864
No 3
>KOG1056|consensus
Probab=99.18 E-value=3.2e-12 Score=132.63 Aligned_cols=83 Identities=18% Similarity=0.386 Sum_probs=73.6
Q ss_pred eeEEEEEeeecCCCCCCccchhhhHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHHHHhhhhceeeeecC
Q psy3590 3 GAFLAWETRHVSIPALNDSKYVGMSVYNVVLMCIMGAAISFVISDKQDASFVIISLFILFCTTATLCLVFVPKIVELKRN 82 (258)
Q Consensus 3 G~FLAweTR~V~i~~fNESK~Ig~SVYnV~VlslI~vPVs~vl~s~pd~~f~lisl~IifcTT~tL~LLFVPKv~~i~~~ 82 (258)
+++.|++||++ +++|||+|+|+|++|..+++|+.++|+++++.+. .+-+...+.+.+|.++.|+++|+||+|.++++
T Consensus 735 Ct~yA~ktR~~-peNFNEaK~I~Ftmy~t~iiWlAfipi~~~t~~~--~~~a~~~is~~lSasv~Lg~lf~PK~yIIl~~ 811 (878)
T KOG1056|consen 735 CTVYAFKTRNL-PENFNEAKFIGFTMYTTCIIWLAFIPIYFGTDHK--IQDATLCISLSLSASVALGCLFIPKVYIILFH 811 (878)
T ss_pred HHHHHhhccCC-hhhhhhhhhhhhhHHHHHHHHHHHHHHHhccCcc--eeeeehehhhHhhhhhhheeEecCcEEEEEec
Confidence 56789999999 5999999999999999999999999999999872 33345567789999999999999999999999
Q ss_pred CCCcch
Q psy3590 83 PQGSID 88 (258)
Q Consensus 83 P~~~~d 88 (258)
|+.|..
T Consensus 812 pe~Nv~ 817 (878)
T KOG1056|consen 812 PERNVI 817 (878)
T ss_pred CccchH
Confidence 998754
No 4
>KOG4418|consensus
Probab=97.24 E-value=0.00053 Score=67.01 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=62.9
Q ss_pred eeeEEEEEeeecCCCCCCccchhhhHHHHHHHHHHHHHh--hhhhccCCCchHHHHHHHHHHHHHHHHHHHhhhhceeee
Q psy3590 2 FGAFLAWETRHVSIPALNDSKYVGMSVYNVVLMCIMGAA--ISFVISDKQDASFVIISLFILFCTTATLCLVFVPKIVEL 79 (258)
Q Consensus 2 fG~FLAweTR~V~i~~fNESK~Ig~SVYnV~VlslI~vP--Vs~vl~s~pd~~f~lisl~IifcTT~tL~LLFVPKv~~i 79 (258)
+|+=+++..|+. ...+||||.|+.++||.+....+... |...-++.||..|++.++.+.+.++.+++++|.||+.+.
T Consensus 114 wG~rvsimrR~a-es~ynesR~cS~aiyn~al~~~a~~v~hv~l~ppa~pdyly~~~fl~tql~~t~t~as~fd~ki~rt 192 (438)
T KOG4418|consen 114 WGFRVSIMRRIA-ESFYNESRNCSGAIYNNALEYRARKVQHVSLRPPAMPDYLYAMLFLTTQLLMTWTVASWFDTKIWRT 192 (438)
T ss_pred cCcceEEEEecc-cccchhhhhccHhhHhHHHHHHhhheeeEEecCCCCccHHHHHHHHHHHHHHHHhHHhhcccccchh
Confidence 355556666665 58899999999999999988554443 223346789999999999999999999999999999876
Q ss_pred ec
Q psy3590 80 KR 81 (258)
Q Consensus 80 ~~ 81 (258)
-.
T Consensus 193 ~~ 194 (438)
T KOG4418|consen 193 AW 194 (438)
T ss_pred cc
Confidence 54
No 5
>smart00338 BRLZ basic region leucin zipper.
Probab=90.09 E-value=0.96 Score=32.85 Aligned_cols=36 Identities=33% Similarity=0.413 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
...+.+...|..+|..|+.++..+..++..|+.++.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999998764
No 6
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.87 E-value=4.8 Score=34.44 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+.++++..+..|...+++.+.++..+++.++...
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555444333
No 7
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.83 E-value=0.26 Score=42.78 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
.+++..+++.|.+.++++|++++++++.|++|..+-.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677899999999999999999999999987743
No 8
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.40 E-value=2.7 Score=42.45 Aligned_cols=42 Identities=5% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSN-------MRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN-------~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
+.|.++..|+.|. ..++++|.+++++++.|+.|+...+.+.-
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 6677777766554 46777788888999999999865455433
No 9
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=87.89 E-value=1.9 Score=31.29 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
...++++..|+.+|..|+.++..+..+++.|+.++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 37889999999999999999999999999998764
No 10
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=85.73 E-value=1.5 Score=34.22 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
+..+..||.+|+++|++++++++.+++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999999999999998876
No 11
>KOG3335|consensus
Probab=85.32 E-value=2.6 Score=37.64 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGSESLALPSSGPHGKTPPGQPPGKSLPSALKP 172 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (258)
+.|..+|+.++.+++.+|+++++.+++--+++-.-..-.++...++|..|-.-..||
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p~~~~sa~~kp 161 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPPNPGPSAENKP 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCCCCCCchhhcCC
Confidence 566777888888888888888887777554433222344455555555544333443
No 12
>PHA03155 hypothetical protein; Provisional
Probab=85.27 E-value=2.4 Score=35.38 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhh
Q psy3590 105 SSELEEKLKDAKMSNMRHRKILA-------------ERENELQALLSRLGS 142 (258)
Q Consensus 105 s~~~eEri~~L~~EN~~Lkk~I~-------------Eke~eIe~L~~qL~~ 142 (258)
+.+.+.++.+|+-||..||+++. +||+.|.....+|.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~ 60 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTK 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999994 588888888777755
No 13
>PRK10722 hypothetical protein; Provisional
Probab=84.98 E-value=4.6 Score=37.75 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQAL---LSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L---~~qL~~~~~ 145 (258)
+.++..|.+++..++.++.....++|.| ++||+++|.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk~ 214 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIERQLSSRKQ 214 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4455556666666666666655555544 366666665
No 14
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=84.97 E-value=1.4 Score=43.66 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..||+ ..|+.|...|.+++.||..|++-+++++.-...
T Consensus 347 aLEEK-aaLrkerd~L~keLeekkreleql~~q~~v~~s 384 (442)
T PF06637_consen 347 ALEEK-AALRKERDSLAKELEEKKRELEQLKMQLAVKTS 384 (442)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444 567888889999999999999999999976444
No 15
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=84.88 E-value=0.79 Score=35.75 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGSESLAL 147 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl 147 (258)
.|..+|++|++.|..|+.||+.|...+++-..||
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999888887776644443
No 16
>KOG4571|consensus
Probab=83.52 E-value=2.2 Score=40.70 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+.++..|+.+|++||.+..++++||+.|++-+.+
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778889999999999999999999999988765
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.66 E-value=6.9 Score=31.59 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
.++++..++.||.+++++-+++.++|+.|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444443
No 18
>KOG1924|consensus
Probab=82.46 E-value=3.4 Score=44.52 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 114 DAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
+....-++.+.+++++++.|..|+
T Consensus 485 ke~ta~qe~qael~k~e~Ki~~l~ 508 (1102)
T KOG1924|consen 485 KELTARQEAQAELQKHEEKIKLLE 508 (1102)
T ss_pred HHHhHHHHHHHHHHHhhhhcccCc
Confidence 333334444444455555555444
No 19
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=82.25 E-value=2.8 Score=32.48 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
.++++++.+|..++++|+++|..+|.-+
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999998888888877766554
No 20
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=81.97 E-value=6.8 Score=33.76 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..|+.+.+...+++++++++.+.+++++.++.++.....
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 568888888889999999999999999999988876433
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.03 E-value=3.2 Score=37.37 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
.++.+|+.||++|++++++..++++.++.++...+
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445788888888888888888888877776644
No 22
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=79.58 E-value=9.9 Score=30.82 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
.+...+++=++.|-.-|||.|++.+.+-+.|..+|+.=+.+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777888899999999999999999999999999986654
No 23
>PRK14127 cell division protein GpsB; Provisional
Probab=79.18 E-value=5.3 Score=32.95 Aligned_cols=36 Identities=6% Similarity=0.047 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+.+..+..||.+|++++.++++++++++.++..
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455556667778888888888888888888887764
No 24
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=78.70 E-value=6.4 Score=29.39 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLAL 147 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl 147 (258)
+.|.++..++...++|-+.+.+...+|+.|++++..-.+++
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777788888888777655543
No 25
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.61 E-value=3.8 Score=42.71 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..+++...|+.||+.|+.+|.|+.++|+.|+.+|.+.+.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888999999999999988888888888866443
No 26
>PRK09458 pspB phage shock protein B; Provisional
Probab=77.51 E-value=8 Score=30.14 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhceeeeecCCCCcchhhhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 62 FCTTATLCLVFVPKIVELKRNPQGSIDKRIRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 62 fcTT~tL~LLFVPKv~~i~~~P~~~~d~r~r~t~~~~S~t~rss~~~eEri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
+..-+++.++||--++.++.+-... +. +. .-+.++++++.+|...-++|+++|..+|.-+
T Consensus 6 l~~PliiF~ifVaPiWL~LHY~sk~---~~-------~~--~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 6 LAIPLTIFVLFVAPIWLWLHYRSKR---QG-------SQ--GLSQEEQQRLAQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred HHHhHHHHHHHHHHHHHHHhhcccc---cC-------CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667776666655443221 00 00 0123677777887777777776666655443
No 27
>PHA03162 hypothetical protein; Provisional
Probab=77.32 E-value=4.7 Score=34.55 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhh
Q psy3590 105 SSELEEKLKDAKMSNMRHRKIL-----------------AERENELQALLSRLGS 142 (258)
Q Consensus 105 s~~~eEri~~L~~EN~~Lkk~I-----------------~Eke~eIe~L~~qL~~ 142 (258)
+.+.+.++.+|+-||..||++| .+||+.|.....+|.+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts 69 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTR 69 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999 4678888777666644
No 28
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.65 E-value=5.8 Score=37.17 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+..+++..++.||..|.+++.+++++.++++++|..
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889999999999999999999999988854
No 29
>PF15058 Speriolin_N: Speriolin N terminus
Probab=76.58 E-value=11 Score=34.25 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
...+++.+|..||++|||++.= =.|-++|++-|+++..
T Consensus 9 GlrhqierLv~ENeeLKKlVrL-irEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRL-IRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 3468899999999999998865 3445677777877444
No 30
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=76.48 E-value=5.7 Score=34.23 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+++.+|+.|...++.+|.+|.+++++|..|..
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~v 32 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQV 32 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999997763
No 31
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=75.80 E-value=9.1 Score=30.96 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+..++.||.+|++++.++..|++-|++-+.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788899999999999999998887763
No 32
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.70 E-value=3.5 Score=38.46 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQA 135 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~ 135 (258)
...+|+.||++||+++.+++++.+.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778888888777666444443
No 33
>KOG0804|consensus
Probab=74.97 E-value=6 Score=40.03 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+++..++++++.+.++|++|++|++||++
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777778888888999999999999976
No 34
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=74.56 E-value=4.6 Score=39.61 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
++...|+.||.+||+++.++..+++.|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666655554
No 35
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.28 E-value=8.4 Score=28.04 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
..++.+++.+++.++++..+++++|+.|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555555545555444
No 36
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=73.51 E-value=6.9 Score=28.75 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++..|..+|.+++.+.+.+|+.++.+|++
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788899999999999999999999987
No 37
>PRK02119 hypothetical protein; Provisional
Probab=73.19 E-value=12 Score=28.47 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+.|+++...+...++|-+.+++...+|+.|+++|..-.+
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666667666655433
No 38
>PRK04406 hypothetical protein; Provisional
Probab=73.08 E-value=12 Score=28.72 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.|+++...+...++|-+.+.+...+|+.|+++|..-.++
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665556666666666666666777777666654333
No 39
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.23 E-value=13 Score=28.15 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.|+++...+.-.++|-+.+++...+|+.|++++..-.++
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666666666666666666554333
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.94 E-value=5.7 Score=37.43 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+...++..++.|+.+.+.+|.+++.+|+.+++++.++.
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555554433
No 41
>PRK00295 hypothetical protein; Provisional
Probab=71.92 E-value=11 Score=28.24 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.|+++...+...++|-+.+.+...+|+.|++++..-.++
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666777777777777777777776654333
No 42
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=71.54 E-value=17 Score=33.15 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
....|+.+++.-.+.|--+|.|||+.|.-|+++......+
T Consensus 133 ~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~~k 172 (205)
T PF12240_consen 133 MANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRKDPGK 172 (205)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Confidence 4456677777778888889999999999999998765543
No 43
>PRK03100 sec-independent translocase; Provisional
Probab=71.32 E-value=13 Score=31.73 Aligned_cols=15 Identities=27% Similarity=-0.033 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAER 129 (258)
Q Consensus 115 L~~EN~~Lkk~I~Ek 129 (258)
+..|-+++++.+++.
T Consensus 55 lg~e~~dlrk~l~el 69 (136)
T PRK03100 55 LGPEFDDLRKPLGEL 69 (136)
T ss_pred HhhhHHHHHHHHHHH
Confidence 445556666666553
No 44
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=70.71 E-value=23 Score=29.69 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
.++..+|..|++|++..+..-..+-..|.+|+.-|.+...|+-
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3888999999999999999999999999999999988766644
No 45
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=70.62 E-value=10 Score=33.37 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+..+++.+++.|...||+-|..|+..-.+|+++|+
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 44455667888888888888888888888888874
No 46
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.56 E-value=10 Score=26.75 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAEREN 131 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~ 131 (258)
+.+.++..|..+|..|+.+|..+..
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666666666666666655543
No 47
>KOG3119|consensus
Probab=70.24 E-value=15 Score=34.08 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+...|...|+.||+.||+++.++..++..|++-+.....
T Consensus 219 e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 219 EMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 677778889999999999999999999999988877444
No 48
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=70.02 E-value=12 Score=31.81 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+....+...+.--++|+.++..||.||..|+++|.+..
T Consensus 84 e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788889999999999999999999998743
No 49
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.64 E-value=18 Score=25.35 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
....+..|..+|+.|+++-.++-+++..|+..+.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667888888888888888888888887764
No 50
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.46 E-value=27 Score=26.48 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.-++-+..|-....+-+++|.++.+++..|.++|.+...
T Consensus 19 fQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 19 FQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334445555555556666666666666666666665433
No 51
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.88 E-value=8.7 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
-..+.+|+.||..|+.++.....+=..|.++...+..
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~ 49 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQ 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999988888888887766443
No 52
>PRK00736 hypothetical protein; Provisional
Probab=68.80 E-value=21 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.|+++...+...++|-+.+.+...+|+.|+++|..-.++
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777776654333
No 53
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.79 E-value=11 Score=34.23 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 113 KDAKMSNMRHRKILAERENELQ 134 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe 134 (258)
.+++.||++||+++++++.++.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444
No 54
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=68.71 E-value=13 Score=30.18 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..++++..+..+++++++.+++.++++..|++.+
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888888888888888888888888887754
No 55
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.70 E-value=20 Score=33.58 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+|..|+++++++..++.+|++.++..+++
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555544
No 56
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.49 E-value=8.6 Score=34.99 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILA---ERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~---Eke~eIe~L~~qL~~~~ 144 (258)
+..++..+|+.||.+|+.++. +..+|.++|++.|+-..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 778888899999999999988 56778888888776543
No 57
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.47 E-value=7 Score=28.07 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
++.+++++++++++.++|++.|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3555666666666666666654
No 58
>KOG2829|consensus
Probab=68.12 E-value=6.6 Score=37.78 Aligned_cols=34 Identities=9% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+.+..|+.|+.++...|.+|.+.+++|.+|+..
T Consensus 131 s~dv~~le~Er~k~~erI~kK~a~lqEl~~q~~~ 164 (326)
T KOG2829|consen 131 SQDVSELEEERKKRMERIKKKAAQLQELIEQVSA 164 (326)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556668999999999999999999999999854
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=67.39 E-value=13 Score=33.60 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
..+.++..|+..|+.+++.++..+++|++|++++.+..
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888888888888888888888887733
No 60
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=67.13 E-value=48 Score=30.56 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALPSSGPHGKTPPGQ 160 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~~~~~~~~~ 160 (258)
...+++..+..+...++.++.+++++++.+.+.+..+...- +++|.+-.|+
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~---~~tg~~G~Gp 182 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT---GGTGVPGKGP 182 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCc
Confidence 33556677777778888888888888888887777665521 3455544443
No 61
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.61 E-value=39 Score=31.79 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.+.++|+.+|+++.++|+- +.+++.+.+...+++
T Consensus 59 ~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~q 92 (262)
T COG1729 59 TQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQ 92 (262)
T ss_pred HHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHH
Confidence 4888899999988888886 555555553333333
No 62
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.51 E-value=22 Score=26.24 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+.|.++.++...-..+|+++.+..+.|+.+++.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666555
No 63
>PRK02119 hypothetical protein; Provisional
Probab=66.34 E-value=33 Score=26.06 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++-+..|-....+-+++|.++.+++..|.++|.+
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444445555444444
No 64
>PRK00736 hypothetical protein; Provisional
Probab=66.09 E-value=33 Score=25.67 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.-|.-+..|-....+-+++|.++..++..|.+|+.+...
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666667777777778888888888888888877543
No 65
>PRK04406 hypothetical protein; Provisional
Probab=66.09 E-value=33 Score=26.30 Aligned_cols=35 Identities=3% Similarity=0.265 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
-+.-+..|-....+-+++|.++.+++..|.+++.+
T Consensus 23 QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 23 QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555555555555555555555544
No 66
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=65.94 E-value=19 Score=33.56 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 119 NMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 119 N~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
|..=-++|+++|.|+..|+.|++
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIA 139 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555555555543
No 67
>KOG4196|consensus
Probab=65.07 E-value=7.5 Score=33.33 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
++-..|+.+|..|++++.++..++.++++.++.-+.
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999999999999999999998877333
No 68
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=64.65 E-value=13 Score=31.92 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
.....|+.||..|.+.|.|++.++..|+...++.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~ 75 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKT 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455699999999999999999999999887663
No 69
>PHA00728 hypothetical protein
Probab=64.21 E-value=9.8 Score=32.58 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
.+..+|+.||++||+.++|+++-|
T Consensus 5 teveql~keneelkkkla~leal~ 28 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALM 28 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345678999999999999877654
No 70
>PRK00295 hypothetical protein; Provisional
Probab=64.15 E-value=37 Score=25.44 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
.-|+-+..|-...-+-+++|.++..++..|.+|+.+..
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666677777778888888888888887743
No 71
>PRK00404 tatB sec-independent translocase; Provisional
Probab=63.66 E-value=31 Score=29.81 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchheeehhhcccC
Q psy3590 155 KTPPGQPPGKSLPSALKPPQPEALTVVKRELLVPN 189 (258)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (258)
.+.+.+++....|..++..++.+-++-+...-.|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T PRK00404 92 TPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPA 126 (141)
T ss_pred CCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 44444445555555555544444444333333333
No 72
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=62.89 E-value=19 Score=26.07 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAER 129 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Ek 129 (258)
..+.++.+++.||++|++++..+
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777888888888888777
No 73
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.73 E-value=21 Score=26.59 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..+++.+.+..|..+.++|.+-+.+..+|.++|
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei 48 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEI 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444444444443333
No 74
>PRK00846 hypothetical protein; Provisional
Probab=62.35 E-value=23 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.|.++...+.-.++|-+.+++...+|+.|++++.-
T Consensus 17 ~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 17 ELETRLSFQEQALTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555566666666544
No 75
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=62.32 E-value=14 Score=28.61 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
.++++++.+|...+++|+++|.-+|.-+
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 38 TDDQALLQELYAKADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888877776665544
No 76
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=62.27 E-value=25 Score=28.17 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.-.|..+-.+-|+.+|+.|..|+++|..++.
T Consensus 64 i~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 64 IMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556666788999999999999988754
No 77
>smart00340 HALZ homeobox associated leucin zipper.
Probab=62.12 E-value=11 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERE 130 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke 130 (258)
..-...|-.||++|+++++|+.
T Consensus 11 Krcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 11 KRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334568999999999998854
No 78
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=61.69 E-value=13 Score=31.98 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 121 RHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 121 ~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+++|++.++++|++.+++.+..++.
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777766443
No 79
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=61.55 E-value=6.4 Score=37.99 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 100 KTRRDSSELEEKLKDAKMSNMRHRKILAERENE 132 (258)
Q Consensus 100 ~t~rss~~~eEri~~L~~EN~~Lkk~I~Eke~e 132 (258)
.|+++.++.-+++++|+.|.++|+|+|.+++++
T Consensus 286 PTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 286 PTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555677777777777777777777776654
No 80
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=61.06 E-value=14 Score=33.58 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+++...||+.|.++|.+|+++|..|++....
T Consensus 120 L~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~ 150 (200)
T PF07412_consen 120 LEEALEENEKLHKEIEQKDEEIAKLKEENEE 150 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999999976544
No 81
>KOG2264|consensus
Probab=61.04 E-value=31 Score=36.47 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.+++.+|+..-++|.-+|+|.+.+||+|++.+-+++.
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~ 128 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL 128 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Confidence 4445556666666666677767777776666654433
No 82
>PRK04325 hypothetical protein; Provisional
Probab=61.04 E-value=31 Score=26.25 Aligned_cols=40 Identities=20% Similarity=0.062 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.|+++...+...++|-+.|++...+|+.|++++..-.++
T Consensus 13 ~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 13 ELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665556666666666666666677777666554333
No 83
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=60.55 E-value=15 Score=34.68 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALPSSG 151 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~ 151 (258)
..+++...|++||++++.++.+++++++...+-+.+-...++.|.
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g~ 80 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLVAGR 80 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 556777778888888888888888888777766666555445433
No 84
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=60.33 E-value=25 Score=28.03 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+++.+|+.||+.++.+++..+++++-.+-+=.+
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557789999999999999999999877755444
No 85
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=59.62 E-value=17 Score=35.35 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
..+..|+.||++||++++++++++..++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777766666644
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.66 E-value=20 Score=33.03 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+...++.+|+.|..+||=+|++...+|+.++++-.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998875544
No 87
>PRK09343 prefoldin subunit beta; Provisional
Probab=58.46 E-value=33 Score=28.15 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..++|+..++.+...+.++...+.+++.+++.+|.+.-.+
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777777777777777777777777765554
No 88
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.37 E-value=13 Score=35.05 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
.+.++++.+++.|-..|+++|.+.++.|.+.++.|.++.+.+.
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999888754
No 89
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=58.26 E-value=41 Score=35.13 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--CCCCCCCCCCCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP--SSGPHGKTPPGQP 161 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~--~~~~~~~~~~~~~ 161 (258)
+.++.+..|..+.+.||..|.|+..-+-.|-..-++...+.+ ..++...|++|+|
T Consensus 474 e~~~~i~~l~~~~e~mk~kl~elq~lv~~l~~~~~e~~~k~l~aaq~~~~~p~~~~~ 530 (617)
T PF15070_consen 474 EKEEYISRLAQDREEMKVKLLELQELVLRLVGDHNEWHSKFLAAAQNPADEPSPGAP 530 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhcCCCCCCCCCCc
Confidence 556778899999999999999866655544433333233333 3444555555555
No 90
>PRK00846 hypothetical protein; Provisional
Probab=58.04 E-value=53 Score=25.58 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+.-+..|-......++.|..+..+++.|.++|.+...
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444445555555556666666666666666655443
No 91
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.97 E-value=44 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.-+..+.+++.||.+|.-.-.++.++++.|+..+.....
T Consensus 37 ~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 37 EKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556678889999999999999999999999999986433
No 92
>KOG3705|consensus
Probab=57.95 E-value=68 Score=32.70 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAER 129 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Ek 129 (258)
..-+.+.+|+++|++||+.+.++
T Consensus 48 q~l~~le~l~qqNEdLk~~~e~l 70 (580)
T KOG3705|consen 48 QTLEALEKLQQQNEDLKSILEKL 70 (580)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 55677888999999999887663
No 93
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=57.10 E-value=22 Score=30.12 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..+..+.+.|+..|.+||++|+.|.+++.
T Consensus 142 ~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 142 SALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44677889999999999999999998765
No 94
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=57.05 E-value=27 Score=30.78 Aligned_cols=30 Identities=33% Similarity=0.263 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+...|+.|+.+|++++.+++++++.|.+++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555443
No 95
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=56.94 E-value=26 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+-.+++..|+.||+...+++.++-++-+++.++|...
T Consensus 101 ~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 101 EQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888899999888887777666666666666553
No 96
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=56.61 E-value=62 Score=29.34 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhhhceeeeecCCC
Q psy3590 57 SLFILFCTTATLCLVFVPKIVELKRNPQ 84 (258)
Q Consensus 57 sl~IifcTT~tL~LLFVPKv~~i~~~P~ 84 (258)
...++.|+.+.++++|+--++++++...
T Consensus 47 ~k~il~i~~~~IllLFiDS~~Rv~rv~~ 74 (192)
T COG5374 47 FKHILKITFIFILLLFIDSWKRVYRVSK 74 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhhh
Confidence 3567899999999999998887776543
No 97
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=56.37 E-value=8.2 Score=33.37 Aligned_cols=27 Identities=7% Similarity=-0.046 Sum_probs=16.1
Q ss_pred cchhhhHHHHHHHH-HHHHHhhhhhccC
Q psy3590 21 SKYVGMSVYNVVLM-CIMGAAISFVISD 47 (258)
Q Consensus 21 SK~Ig~SVYnV~Vl-slI~vPVs~vl~s 47 (258)
++..+|.+|.+.++ |++..|+.=+...
T Consensus 18 g~p~~fvv~~~~i~vw~~~gpl~~fsdt 45 (141)
T COG5478 18 GRPPAFVVALVAILVWAGSGPLFGFSDT 45 (141)
T ss_pred cCChHHHHHHHHHHHHHccCcccCcccc
Confidence 45567777776655 6666666433333
No 98
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=56.33 E-value=19 Score=26.23 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~E 128 (258)
+....++.+|++||+.|+.+|.-
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999888887754
No 99
>PHA01750 hypothetical protein
Probab=56.29 E-value=17 Score=28.12 Aligned_cols=30 Identities=7% Similarity=-0.055 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+.|-.-|+++|.+.+.+++.+++|+.+-+.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444555555555555555555555443
No 100
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=56.14 E-value=17 Score=32.10 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 117 MSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 117 ~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.|-++||.+|++.|+||..|++-|..
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~a 54 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAA 54 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999887765
No 101
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=55.72 E-value=36 Score=25.32 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.-++.+..|-....+-+++|..+..+++.|.++|.+...
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556677777777788888888888888888888888653
No 102
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.02 E-value=55 Score=32.25 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..|..|-++++++|.++++++..+++++.+...+
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477777888888888888888888888886654
No 103
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=54.83 E-value=42 Score=28.21 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.+.+++...|+...+.|+++...+++++++|+..|.++-.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4888899999999999999999999999999999987544
No 104
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.53 E-value=20 Score=31.91 Aligned_cols=33 Identities=21% Similarity=0.083 Sum_probs=21.1
Q ss_pred ccchheeehhhcccCCCcccCCChhhHHHHHHHHH
Q psy3590 175 PEALTVVKRELLVPNNHGILSEDPFYYWKALCHAL 209 (258)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (258)
+...++. .+-+||.....+.|+-=..-||.|+.
T Consensus 173 ~~~~~I~--~~~lp~~~~~~~~~~~~isaALgyva 205 (302)
T PF10186_consen 173 SSEYTIC--GLPLPNSRDFNSLPDEEISAALGYVA 205 (302)
T ss_pred CCCeeec--CcccCCCcccccCCHHHHHHHHHHHH
Confidence 4445533 66778877777777766667776653
No 105
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=54.46 E-value=9.9 Score=38.69 Aligned_cols=31 Identities=6% Similarity=0.047 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
||.+|+.|.++||+++.+++.++++.+++-.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~ 62 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEKHSA 62 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHhhh
Confidence 5555555555555555555544544444433
No 106
>KOG4797|consensus
Probab=54.26 E-value=28 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+-.++|.+.||.+|.|+++....|++
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776666655553
No 107
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.07 E-value=38 Score=28.11 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
..+.....|+.+|.+.-+.+.+++++|.++...|...|
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888888888888899999988888887643
No 108
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=53.59 E-value=25 Score=32.96 Aligned_cols=19 Identities=47% Similarity=0.496 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAERE 130 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke 130 (258)
..+++.||++||++++|++
T Consensus 68 ~~~~~~en~~Lk~~l~~~~ 86 (284)
T COG1792 68 LKDLALENEELKKELAELE 86 (284)
T ss_pred hHHHHHHhHHHHHHHHHHH
Confidence 3456677777777776643
No 109
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=53.58 E-value=1e+02 Score=30.41 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
...|..+-++++++|+++++++..+++++.+...+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577788888889999999999988888886665
No 110
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=53.28 E-value=31 Score=27.51 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+..+++.||+.|+++.+++..|+.--+.++.+.
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555553
No 111
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.28 E-value=22 Score=34.19 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
-+++|+...++-...|.++|.||++|+.||
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL 98 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQL 98 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345566666666666666666666666555
No 112
>PRK04325 hypothetical protein; Provisional
Probab=52.41 E-value=78 Score=24.06 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
.-|+-+.+|-....+-+++|.++.+++..|.+||.+..
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555666666666667777777777777776643
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.79 E-value=28 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
..+++..+++.|...|.+.+..++.+++.++.+|...+.++-
T Consensus 25 ~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 25 QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777788888888888888877766543
No 114
>PHA01750 hypothetical protein
Probab=51.44 E-value=44 Score=25.86 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
-...++..|..|.++++..+.+++.++++++++++.
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 456777889999999999999999999999998864
No 115
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=51.05 E-value=52 Score=25.05 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+++...++.+...+++.+..+++++++++..|..
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777777777777654
No 116
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.94 E-value=59 Score=26.94 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE-----------RENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E-----------ke~eIe~L~~qL~~~~~kl~ 148 (258)
..++++.+.+.|.+.+|+++.+ +...-+.|-+++.+-..+|+
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677788888888888888776 34445566677777777776
No 117
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.36 E-value=30 Score=36.43 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++.++..|+++|.++..++++|+++|+.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555554
No 118
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.28 E-value=50 Score=25.08 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..++..++.+...+++.+.+.+.+++.|++++.
T Consensus 39 r~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 39 RAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444555555555555555555555554
No 119
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.25 E-value=72 Score=29.30 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+|..+.+++.|++..+..|..+..+...|+.+++.
T Consensus 63 n~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888888888877777777777765
No 120
>KOG4010|consensus
Probab=50.20 E-value=39 Score=30.80 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
++.++++|...||+-|+.|+.-..+|+++|+
T Consensus 52 EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 52 ELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444566666666666666666666666653
No 121
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.05 E-value=75 Score=25.95 Aligned_cols=30 Identities=27% Similarity=0.178 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
..++++..+..+-..||+++.++-+|-..|
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666655533333
No 122
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.76 E-value=31 Score=25.62 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
.+.+++|..|+.|..+++..|+.|.+.-
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888888877654
No 123
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.76 E-value=39 Score=27.26 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
.+.++++.+++.+|+.|+++|..+...-+-++++ .-+...+.
T Consensus 37 ~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~-AR~~Lg~v 78 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER-ARNELGMV 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH-HHHHcCCC
Confidence 3778888999999999999999986643444443 33334433
No 124
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=49.72 E-value=28 Score=32.10 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=14.9
Q ss_pred eeeccCcchhhHHHHhhhh
Q psy3590 231 VMVRPATHYQVDLMRSACQ 249 (258)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~ 249 (258)
+.+.|+.|-||-..|..+.
T Consensus 161 ~v~~~~~~~~v~mvrGl~~ 179 (236)
T PF12017_consen 161 EVNEPANYVQVFMVRGLFK 179 (236)
T ss_pred cccChhhhhhHHHHHHHHh
Confidence 4568899999988887764
No 125
>KOG0971|consensus
Probab=49.62 E-value=2.5e+02 Score=31.52 Aligned_cols=107 Identities=22% Similarity=0.352 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCccchheeehhhcccCCCcccCCChh
Q psy3590 121 RHRKILAERENELQALLSRLGSESLALPSSGPHGKTPPGQP-PGKSLPSALKPPQPEALTVVKRELLVPNNHGILSEDPF 199 (258)
Q Consensus 121 ~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (258)
-|+..|.++|.+-.+|+++++....|...|. -++++.+-+ ..+|.|+ .|++-.+ +|. .|...+.||
T Consensus 1030 aLq~di~~lEsek~elKqrl~~~~~k~q~~s-~~~~~~~ist~~sG~~s--~~~~~s~---------~~g-~a~~g~~p~ 1096 (1243)
T KOG0971|consen 1030 ALQADIDQLESEKAELKQRLNSQSKKTQEGS-RGPPPSGISTLVSGIAS--EEQQRSA---------IPG-QALVGDSPL 1096 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHhhhcccccCccc-cCCCCcceeccccCCCC--Ccccccc---------CCC-cccccccHH
Confidence 3555666666666777788777555544332 334443332 1223332 2233222 121 255566677
Q ss_pred hH--HHHHHHHH---HHHHHHHHhHHHHHHHhhcCceeeccCcchh
Q psy3590 200 YY--WKALCHAL---KHLKRLLQSQHYEMMLKQTNPVMVRPATHYQ 240 (258)
Q Consensus 200 ~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (258)
.- -.++-.|+ .|..+.||.+....-+.+--|+.|.+++|-.
T Consensus 1097 l~~qin~l~na~~qer~er~~Lkg~~mra~~aalppLhvpq~~~e~ 1142 (1243)
T KOG0971|consen 1097 LLQQINALRNAISQERHERSILKGAQMRASLAALPPLHVPQLSHEG 1142 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhcCCCccCCCccccc
Confidence 54 23455554 4667788888888888999999999998865
No 126
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.98 E-value=44 Score=35.40 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+.+.+.|.+..+.+|.++|.||.+|++++.+-..
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677777888888899999999998887544
No 127
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.84 E-value=54 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..++.+...+.+.+.++++++.+++.+|.+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777777777777777776654
No 128
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.60 E-value=54 Score=25.88 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..++.+-.++.+.+.++.++++.++..+..
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888888888888888877764
No 129
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.53 E-value=70 Score=23.85 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
..+.++++.+..|..|..+|..+..++++++.
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67888899999999999999999999988874
No 130
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=48.48 E-value=1e+02 Score=29.29 Aligned_cols=41 Identities=32% Similarity=0.499 Sum_probs=30.3
Q ss_pred ccCCChhh----HHHHHHHHHHHHHHHHHhHHHHHHHhhcCceeec
Q psy3590 193 ILSEDPFY----YWKALCHALKHLKRLLQSQHYEMMLKQTNPVMVR 234 (258)
Q Consensus 193 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (258)
+-|+||++ |..|+-|++..|.| .....|+...++-+|-+.+
T Consensus 225 ~~s~d~~frYSgy~~~l~y~l~~l~~-~d~e~~~~l~~~l~~~v~~ 269 (318)
T PF12725_consen 225 INSPDPYFRYSGYLFALRYCLNALYR-KDPEAYKELYSQLSPGVKK 269 (318)
T ss_pred hcCCChheeHHHHHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHH
Confidence 34678887 55677777778888 6777888888888876544
No 131
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=48.43 E-value=52 Score=25.02 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
++..++..+-+++...+.+|-+.++.+-+.+
T Consensus 47 ~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 47 KEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333344444444444444444444444333
No 132
>KOG3335|consensus
Probab=48.39 E-value=85 Score=28.26 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALPSSGPHGKTPPGQPPGKSLPSALKPPQP 175 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (258)
+.++..|+.+.+.|..+|+++.+++..|-+++++....|- +-....|+++.+ -++-|+..++-++
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~-~~~q~~p~~~~s-a~~kp~~~s~~~~ 169 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELK-PIRQAPPNPGPS-AENKPAKESLKQR 169 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-ccccCCCCCCch-hhcCCccccchhh
Confidence 4455667888888888999999999999999988765543 444444444443 4556666666555
No 133
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.31 E-value=26 Score=26.84 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
..+--+|+.|+.+|++++.++...|..+.+.
T Consensus 42 ~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 42 LKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555555555554443
No 134
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=48.08 E-value=54 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
.....+...|..|...+..+|..+|..+.+|..++.++
T Consensus 50 ~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~q 87 (88)
T PF14389_consen 50 SSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQQ 87 (88)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677888899999999999999999999999988753
No 135
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.96 E-value=56 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAEREN 131 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~ 131 (258)
..+.++.+++.||.+|+.++..+..
T Consensus 35 ~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 35 KLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5677778888888888888887654
No 136
>PRK11637 AmiB activator; Provisional
Probab=47.84 E-value=27 Score=33.91 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++++..++.+.+.++++|.+++++|+.+++++..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444
No 137
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.44 E-value=38 Score=29.93 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
++.||..++++++++..+++.|+..
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKE 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 138
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.12 E-value=66 Score=23.90 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
....++.+++.+.+.++.+-.++..|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666777777777777777777777665
No 139
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=46.77 E-value=80 Score=21.98 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=18.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhc
Q psy3590 119 NMRHRKILAE-RENELQALLSRLGSE 143 (258)
Q Consensus 119 N~~Lkk~I~E-ke~eIe~L~~qL~~~ 143 (258)
.+++|++|++ |++-|+.+++.|+..
T Consensus 13 L~EvrkEl~K~K~EIIeA~~~eL~r~ 38 (40)
T PF08776_consen 13 LEEVRKELQKVKEEIIEAIRQELSRR 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567778777 777788888877643
No 140
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.64 E-value=60 Score=23.92 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
..+..+..++.||+++++.+.+.+.-+..|-
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678899999999999999888887654
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=46.44 E-value=39 Score=36.31 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
....+|+..++.||+.||+-|++||+|++.-+...+.
T Consensus 261 ~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ 297 (769)
T PF05911_consen 261 EFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAK 297 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999988755544
No 142
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=45.93 E-value=29 Score=29.18 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~E 128 (258)
.+...++.+|+-||..||++|.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 36777888888888888887765
No 143
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=45.84 E-value=30 Score=26.25 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAEREN 131 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~ 131 (258)
.+.++||.-|+.|.++++.++.+|.+
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36777777777777777777666544
No 144
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=45.07 E-value=48 Score=32.19 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhhcee
Q psy3590 61 LFCTTATLCLVFVPKIV 77 (258)
Q Consensus 61 ifcTT~tL~LLFVPKv~ 77 (258)
++......|++-+|+-.
T Consensus 172 l~i~~~g~Glv~iP~~l 188 (471)
T PF04791_consen 172 LFIILLGYGLVAIPRDL 188 (471)
T ss_pred HHHHHHhccHHHHHHHH
Confidence 34444556677788653
No 145
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.55 E-value=53 Score=29.01 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.++++..|+.|++.|++++.++.++.+.++++..+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888888877766654
No 146
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=44.40 E-value=18 Score=31.99 Aligned_cols=13 Identities=38% Similarity=1.032 Sum_probs=9.3
Q ss_pred CCChhhH--HHHHHH
Q psy3590 195 SEDPFYY--WKALCH 207 (258)
Q Consensus 195 ~~~~~~~--~~~~~~ 207 (258)
..=|||| |.|-||
T Consensus 158 PNiP~FYl~yRaysh 172 (187)
T PF10173_consen 158 PNIPFFYLAYRAYSH 172 (187)
T ss_pred CCccHHHHHHHHHHH
Confidence 3458887 788887
No 147
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.20 E-value=40 Score=34.31 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E 128 (258)
+.+.++..|+.||+.|+++-++
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~ 91 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENER 91 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555544443
No 148
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.18 E-value=41 Score=28.54 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
+.++.+|+.|..+++.++.++++++..|
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445444444444444444444333
No 149
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.98 E-value=95 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+.++++..++.+.++.++.++++|..|..++...
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~ 36 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASS 36 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567778888888888888888888888887553
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.32 E-value=57 Score=31.01 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
+..|+.|+.++.++|.+++++.+.+
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 151
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=43.32 E-value=7.9 Score=32.66 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
++.+.++|++++.++-..|.+|++++.++.-
T Consensus 32 ~edyiEdL~k~i~q~~qil~elne~i~nR~i 62 (130)
T PF06720_consen 32 LEDYIEDLNKRIQQRTQILSELNEVIYNRSI 62 (130)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455677888999998899999999887643
No 152
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=43.21 E-value=52 Score=33.57 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAERENE 132 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~e 132 (258)
.+++.|+.|.+.||+++.|++++
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544433
No 153
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.16 E-value=73 Score=25.42 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..++.....+.+++..+++++.+++.++.+
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777777777777776654
No 154
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=43.11 E-value=57 Score=30.76 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+.++.+|+.+++.+++++.+++++++.+++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888888888888855
No 155
>PRK04654 sec-independent translocase; Provisional
Probab=42.77 E-value=28 Score=31.97 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
|.+..+++.+.++++..+.+...++....+++.+..+
T Consensus 53 El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~ 89 (214)
T PRK04654 53 ELEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGAR 89 (214)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666666665443
No 156
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.60 E-value=78 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
....++.+|..+...+|..+..--.|-.+-.+||++
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444
No 157
>PRK11637 AmiB activator; Provisional
Probab=42.33 E-value=14 Score=35.80 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
..++++..++.+...++++|.+++++|+..+..+..+.
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555554433
No 158
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=42.04 E-value=83 Score=22.02 Aligned_cols=29 Identities=7% Similarity=0.043 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+...+|+.+...|..+..++..+|..|++
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666666666666666666666554
No 159
>PRK14127 cell division protein GpsB; Provisional
Probab=41.69 E-value=1.1e+02 Score=25.19 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
.+.++=+..+-.+-+.|.+++.++.+++..|+++|.+-...
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777778888899999999999999999999999986664
No 160
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=41.61 E-value=88 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
...+++.+++.++..+.. +.+.+.+|+.|.++|
T Consensus 56 nla~e~~~~~~~~~~~~~-~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 56 NLADELLKLKRELDELEE-LERLEERIEELNERL 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhh
Confidence 566777778888877777 667778888888776
No 161
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=41.47 E-value=35 Score=28.52 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 114 DAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+++.+-+.|+.++.+++.+++.+++
T Consensus 109 ~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 109 ELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555544
No 162
>KOG1151|consensus
Probab=41.24 E-value=35 Score=35.44 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
-+.++.+|..-|.++|++|.|.++.+|..+++++.
T Consensus 245 kegriddllRancDlRRQIdEqqk~LEkyKerlnk 279 (775)
T KOG1151|consen 245 KEGRIDDLLRANCDLRRQIDEQQKMLEKYKERLNK 279 (775)
T ss_pred hcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999988865
No 163
>KOG4010|consensus
Probab=41.20 E-value=35 Score=31.09 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
-+.|.++||.+|++.|+||.-|++=|..+.+
T Consensus 42 Se~Ekeelr~EL~kvEeEI~TLrqVLaAKer 72 (208)
T KOG4010|consen 42 SEEEKEELRTELAKVEEEIVTLRQVLAAKER 72 (208)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667779999999999999999887765433
No 164
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=41.19 E-value=68 Score=26.48 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=7.0
Q ss_pred HHHhhhhceeeeec
Q psy3590 68 LCLVFVPKIVELKR 81 (258)
Q Consensus 68 L~LLFVPKv~~i~~ 81 (258)
|-.++.|++..++.
T Consensus 21 l~~~~~~pi~~~l~ 34 (156)
T PRK05759 21 IMKFVWPPIMKALE 34 (156)
T ss_pred HHHHhHHHHHHHHH
Confidence 33445565555543
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.16 E-value=65 Score=29.06 Aligned_cols=14 Identities=29% Similarity=0.135 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhh
Q psy3590 129 RENELQALLSRLGS 142 (258)
Q Consensus 129 ke~eIe~L~~qL~~ 142 (258)
++++.+.|++++..
T Consensus 137 L~~~n~~L~~~l~~ 150 (206)
T PRK10884 137 LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 166
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=41.11 E-value=90 Score=26.89 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q psy3590 60 ILFCTTATLCLVF 72 (258)
Q Consensus 60 IifcTT~tL~LLF 72 (258)
|.|..++.++..|
T Consensus 34 inflil~~iL~~f 46 (184)
T PRK13455 34 LAFLLFIGILVYF 46 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 167
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=41.01 E-value=89 Score=23.94 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+...++..||-+||-++..+..+++.+++.|.++..
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557888888888888888888888888877554
No 168
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.91 E-value=97 Score=31.66 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRK 124 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk 124 (258)
....+-.+|+.||++||+
T Consensus 77 ~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 77 KLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445556666666665
No 169
>smart00338 BRLZ basic region leucin zipper.
Probab=40.86 E-value=90 Score=22.43 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
...+..|+.+.+.|..+..++.++++.|+.++..-+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778999999999999999999999888776443
No 170
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=40.79 E-value=69 Score=28.74 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..+++-.++...|-++...+.+++++|..++++-.+++++
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788888899999999999999999999999998887664
No 171
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=40.69 E-value=64 Score=27.30 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+.+++++|..+|...|.+.+.+++.|++++.+
T Consensus 59 q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~d 92 (120)
T COG4839 59 QTKAYQVQGEITDLESKISEQKTENDDLKQEVKD 92 (120)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3344445555555555555555555555555433
No 172
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=40.56 E-value=44 Score=34.65 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
-++|.+|+.+|+.+.++|.+++.++...+++
T Consensus 376 f~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 376 FDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678888888888888888888777776
No 173
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=40.55 E-value=22 Score=36.21 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+++..++ +.++|+++|+|+++|+++|++++++-..
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 3333455 8999999999999999999999977443
No 174
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=40.47 E-value=1e+02 Score=24.27 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=8.9
Q ss_pred HHHhhhhceeeeecCCCCc
Q psy3590 68 LCLVFVPKIVELKRNPQGS 86 (258)
Q Consensus 68 L~LLFVPKv~~i~~~P~~~ 86 (258)
|.-++.|.+..++..-+..
T Consensus 16 l~~~~~~pi~~~l~~R~~~ 34 (132)
T PF00430_consen 16 LNKFLYKPIKKFLDERKAK 34 (132)
T ss_dssp HHHHTHHHHHHHCS--S-H
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566666666544443
No 175
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=40.44 E-value=1.1e+02 Score=26.29 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAE 128 (258)
Q Consensus 115 L~~EN~~Lkk~I~E 128 (258)
.+....++++++.+
T Consensus 72 a~~~~~e~e~~L~~ 85 (167)
T PRK08475 72 SKEKKEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 176
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.26 E-value=65 Score=28.70 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+..+.++..||.+|..-|++...++++|+++|.+
T Consensus 45 ~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 45 RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999999999999998876
No 177
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.23 E-value=84 Score=25.26 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+.++..|+..-+.+++.|.++.++++.+++.++.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 91 FLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888888888888888777654
No 178
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=40.17 E-value=60 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
++++++..|-++||.++..++.|++-++....+..
T Consensus 3 ~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~~~~ 37 (60)
T PF11461_consen 3 QELREVLQERNELKARVFLLEEELAYYKSELLPDE 37 (60)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 35678899999999999999999999998665543
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.93 E-value=66 Score=30.57 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..++++.+|+.|.+++.++|.+++.+-+++.+++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555555544444
No 180
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.77 E-value=87 Score=25.07 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..+.++..|...-+.+.+.+.++..+++.+...+.
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666666666666666666666666666554
No 181
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=39.49 E-value=85 Score=32.50 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q psy3590 120 MRHRKILAERENELQALLSRLGSESLALPSSGPHGKT 156 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~~~~~ 156 (258)
+++++++.++....+.+..++..+.+.=|.|+.-|.-
T Consensus 592 ~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~ 628 (653)
T PTZ00009 592 EEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGM 628 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 4445555555555555555554444443444433333
No 182
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=39.40 E-value=14 Score=29.55 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++++=+..+..+...|.+++.++..+++.|+.++..
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~ 57 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEE 57 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444444444444444444444444444444433
No 183
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=39.31 E-value=70 Score=24.82 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
...+++..|+.+.+.++.++++.+.+++.++.++.
T Consensus 67 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 67 SDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777788888887777777776653
No 184
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.29 E-value=58 Score=24.85 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy3590 126 LAERENELQALL 137 (258)
Q Consensus 126 I~Eke~eIe~L~ 137 (258)
..++..+.+.|+
T Consensus 41 ~~~L~~en~~L~ 52 (72)
T PF06005_consen 41 NEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333443333
No 185
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=38.78 E-value=84 Score=26.95 Aligned_cols=37 Identities=19% Similarity=0.049 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
-.|+++-.+..+.+.|-++|.|+..++++|+++-...
T Consensus 97 ~~ed~L~~llaqLealsqqL~~ls~qv~~L~~~~~~~ 133 (135)
T PHA03385 97 LAEDKLLVLLAQLEALSQQLQELSQQVAQLREQTQSA 133 (135)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc
Confidence 6688888899999999999999999999998876543
No 186
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.70 E-value=68 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
....+...|..||+.|+.++.++...+
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666678888888888888876654
No 187
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.62 E-value=69 Score=28.74 Aligned_cols=40 Identities=38% Similarity=0.381 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.+.+++..+...|++++++.|.|.-.+++++-+.+.+..+
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~ 160 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTD 160 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999998888776544
No 188
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.32 E-value=1.1e+02 Score=28.45 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
-...|-.+.+..|.+|.+++.+...++..|+.++++
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~ 118 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVES 118 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666666544
No 189
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.31 E-value=72 Score=29.84 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILA----ERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~----Eke~eIe~L~~qL~~~~ 144 (258)
...++-.+|+.|+.++++++. ++++|.++|++.|+-+.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 556666778888776644444 47788888888876643
No 190
>KOG3990|consensus
Probab=38.26 E-value=57 Score=31.16 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+.--.+.+|++|..+|++.|.+||.+|-+-..||.+-+
T Consensus 222 dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLK 259 (305)
T KOG3990|consen 222 DHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLK 259 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccC
Confidence 44556788999999999999998888877777776633
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.10 E-value=53 Score=29.29 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..++.+.+.++++|.++.++++++++.+..
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555544433
No 192
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=37.98 E-value=78 Score=24.82 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+.|+..|+.+-+.+++.++++.++|+.++..++.
T Consensus 81 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 81 FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888888888888777776654
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.90 E-value=61 Score=27.50 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHR 123 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lk 123 (258)
...+++..|+.++..++
T Consensus 83 ~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 83 ELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 194
>PLN02678 seryl-tRNA synthetase
Probab=37.83 E-value=1.3e+02 Score=30.33 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..|..|-+.++++|.+++++++++++++.+...+
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677778888888888888888888775554
No 195
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.64 E-value=88 Score=28.49 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
++.|...|.+.|+++|...++|.+
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~r 129 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIR 129 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 196
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=37.33 E-value=67 Score=26.22 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
...++..++.||+.|+++-.+++++|..|+..
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566777777777777777777777665
No 197
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=37.06 E-value=1e+02 Score=26.47 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=6.7
Q ss_pred HHHHhhhhceeeee
Q psy3590 67 TLCLVFVPKIVELK 80 (258)
Q Consensus 67 tL~LLFVPKv~~i~ 80 (258)
.|..++.|.+..++
T Consensus 34 lL~~~l~~pi~~~l 47 (173)
T PRK13453 34 LLKKFAWGPLKDVM 47 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 34344455555544
No 198
>PLN02320 seryl-tRNA synthetase
Probab=36.76 E-value=2.3e+02 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
.|..|-+.++++|.++++++..++.++.+....
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQS 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666667777777777777776665443
No 199
>KOG1510|consensus
Probab=36.70 E-value=78 Score=27.41 Aligned_cols=36 Identities=25% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.--+++.+|+.||++-..++.+...+=+.|.+++.+
T Consensus 88 ~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~ 123 (139)
T KOG1510|consen 88 AQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQS 123 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668999999987777766655555555555543
No 200
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=36.43 E-value=90 Score=24.52 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhhh-ccCCCchHHHHHHHHHHHHHHHHHHHhhhhce
Q psy3590 27 SVYNVVLMCIMGAAISFV-ISDKQDASFVIISLFILFCTTATLCLVFVPKI 76 (258)
Q Consensus 27 SVYnV~VlslI~vPVs~v-l~s~pd~~f~lisl~IifcTT~tL~LLFVPKv 76 (258)
+|...++++++.-|+..+ ..+.| +-+.|++.++..+...+|+|+.-+
T Consensus 21 CM~QLtvLs~~~w~iWw~~f~d~P---~sieSIALl~~~~AfsgLL~lHLv 68 (77)
T PF12292_consen 21 CMWQLTVLSVLSWPIWWFFFRDTP---TSIESIALLFFCFAFSGLLFLHLV 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999988644 34544 445677777777766677776543
No 201
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=36.40 E-value=93 Score=24.90 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQ 134 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe 134 (258)
+.++.+|+.+|..+.+++.++.++++
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444433
No 202
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=36.18 E-value=75 Score=25.86 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=13.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHh
Q psy3590 119 NMRHRKILAE----RENELQALLSRL 140 (258)
Q Consensus 119 N~~Lkk~I~E----ke~eIe~L~~qL 140 (258)
.+.||+.|.+ ..++|+.|+++|
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444 677777777665
No 203
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.92 E-value=50 Score=23.56 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy3590 114 DAKMSNMRHRKILAE 128 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~E 128 (258)
+++.|.+++++++++
T Consensus 52 ~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 52 RLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444445554443
No 204
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=35.90 E-value=2.7e+02 Score=27.96 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHH-HhhcCceeeccCcchhhHHHHh---------hhhhhhhccCCC
Q psy3590 199 FYYWKALCHALKHLKRLLQSQHYEMM-LKQTNPVMVRPATHYQVDLMRS---------ACQDYWILSGWP 258 (258)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 258 (258)
-+.+..++..|..+-+.+++-+---. .++..+....+.+.+. +.+++ .|--+||.+|||
T Consensus 295 ~~l~~~l~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~~~d~~-~A~~~alra~la~~~~~l~Wi~t~W~ 363 (650)
T PF04632_consen 295 RALLARLADLLRDLIQALRSLRALRRPIPARRPFRFPLHRDWP-LALRNALRAFLAILIAGLFWIATGWP 363 (650)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhcccccccccccccccchH-HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45566666666666655554332111 1112222222222222 22333 467899999998
No 205
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.80 E-value=1.1e+02 Score=25.17 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
..+.++..|...-+.+++.|.++..+++.+++++.+.
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888888888888888888777663
No 206
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.36 E-value=65 Score=34.15 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
-.+|..+|+.|-..||++++.||+++..|++.+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788999999999999999999999998774
No 207
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=35.22 E-value=1.1e+02 Score=24.94 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
-+.|.+.|+++=.+++++|+.-+++|++
T Consensus 67 r~~EkEqL~~Lk~kl~~e~~~~~k~i~~ 94 (100)
T PF04568_consen 67 RKKEKEQLKKLKEKLKEEIEHHRKEIDE 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777777776665
No 208
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.98 E-value=53 Score=24.41 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 119 NMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 119 N~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
..+|...|+.+++||..++..+..+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778999999999998888654
No 209
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=34.86 E-value=1.2e+02 Score=24.41 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
...+++.+++.+|-++++.-.++-.++.+|.++......
T Consensus 14 ~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 14 SLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 678888999999999999999999999888877665433
No 210
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=34.75 E-value=40 Score=25.26 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
-|+....+|..++.+++.|-..|++...++.-+
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~ 50 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLLKQNASPEQLA 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344444555555555666666666666554443
No 211
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.73 E-value=94 Score=25.36 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
.....++..|..||..|+.+-..+-..+..+.+
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366677777777777777777666666555554
No 212
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=34.44 E-value=74 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...++..-|+.++.+|+++|.+++.|++.++..|.=
T Consensus 172 ~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~f 207 (323)
T PF08537_consen 172 SNSDRVILLQKKIDELEERLNDLEKELEITKKDLKF 207 (323)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788889999999999999999999988888743
No 213
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=34.39 E-value=1.6e+02 Score=21.01 Aligned_cols=42 Identities=26% Similarity=0.299 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
+..+.+.+.+.+|.+-+.++.+++.=|+.|-.++.+....++
T Consensus 4 eL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~~P~IL 45 (48)
T PF09457_consen 4 ELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQTPSIL 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-GGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 445566677788888888888888888888888877666554
No 214
>KOG4797|consensus
Probab=34.26 E-value=83 Score=26.50 Aligned_cols=42 Identities=19% Similarity=0.058 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
...|+..-|+++..+|......++.|-.-|++...++..+-+
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql 105 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQL 105 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 456667777777777777888888888888877766555444
No 215
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.14 E-value=90 Score=30.26 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+..++-..|+.|...||+.+.|....|..|+++++....
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 778888899999999999999999999999999988655
No 216
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.01 E-value=51 Score=20.38 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3590 118 SNMRHRKILAERENELQAL 136 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L 136 (258)
|-+++|..|..++.++...
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 217
>PRK10722 hypothetical protein; Provisional
Probab=33.95 E-value=1.5e+02 Score=27.95 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=26.8
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDA----KMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L----~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..|+.+| ..+.+.++++..++..+++...++|.+
T Consensus 164 r~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEn 201 (247)
T PRK10722 164 RQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLEN 201 (247)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567 778888888888888888888888887
No 218
>COG4420 Predicted membrane protein [Function unknown]
Probab=33.92 E-value=2.8e+02 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
|.+...|-.+-..++..+..+-.+++.+++.+.+...+
T Consensus 133 E~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~ 170 (191)
T COG4420 133 EQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPE 170 (191)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcc
Confidence 44444455555555555555555666677666654443
No 219
>KOG0837|consensus
Probab=33.83 E-value=26 Score=33.31 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
++|.+|+.....++-+..+++.++..|++++++.+++.+
T Consensus 227 drisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 227 DRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666677777777777777777666
No 220
>KOG4343|consensus
Probab=33.71 E-value=86 Score=32.88 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
..|.+++.|+.||+.||++=+.+..+|++|..
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 66778888888888888777777666666654
No 221
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.61 E-value=2.7e+02 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.+.|++.+.+.+.+..+++.+...+..
T Consensus 78 ae~ei~~l~~~l~~l~~~~~~~~~~~~ 104 (108)
T PF06210_consen 78 AEQEIERLHRKLDALREKLGELLERDQ 104 (108)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555555555555555555544443
No 222
>PRK11239 hypothetical protein; Provisional
Probab=33.57 E-value=71 Score=29.46 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+...|+.+...|+.+++++.++++.|..+++
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~~ 214 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHLG 214 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444777777777777777777777776654
No 223
>KOG2577|consensus
Probab=33.44 E-value=75 Score=31.31 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+||+..|+.|.+.|+++=.++|..|+.+++.|..
T Consensus 141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~ 176 (354)
T KOG2577|consen 141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRL 176 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999998855
No 224
>PF14802 TMEM192: TMEM192 family
Probab=33.32 E-value=3.9e+02 Score=24.65 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAE 128 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~E 128 (258)
|..|+++|..|.++|.+
T Consensus 218 I~yLk~hn~~L~~ril~ 234 (236)
T PF14802_consen 218 IRYLKEHNARLSRRILA 234 (236)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45577777777777665
No 225
>KOG3533|consensus
Probab=32.91 E-value=63 Score=37.59 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=37.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 97 PMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 97 ~~S~t~rss~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
-+|-.+++...++.+++.++.+..+....+.++..++++|+.+..+
T Consensus 2656 AmSLvs~e~dgeQnE~r~mq~qL~stm~Lv~~ls~Ql~Elk~~MtE 2701 (2706)
T KOG3533|consen 2656 AMSLVSSELDGEQNEVRQMQDQLLSTMTLVRELSSQLEELKAQMTE 2701 (2706)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555545677888899999999999999999999999999844
No 226
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.89 E-value=1.5e+02 Score=21.18 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+.+..|+.+...|..+...+..+++.|+..+.+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777766554
No 227
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.83 E-value=1.1e+02 Score=29.82 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.++++..+.+-..++.++|++...+++..++++.++..+
T Consensus 284 ~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 284 EVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444444444555555555555555555555554443
No 228
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=32.61 E-value=74 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.|+.|+++||.++.++..|+ .+++++.+
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHCH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 36666666666666666666 55555543
No 229
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.24 E-value=1.3e+02 Score=29.00 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy3590 121 RHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 121 ~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+-||+|+++...|+-++..|.+
T Consensus 121 EARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhch
Confidence 4455666666666666655544
No 230
>KOG2264|consensus
Probab=32.19 E-value=77 Score=33.67 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
|.++....+++|++|.++..++..|+-.+.+
T Consensus 109 I~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 109 IEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 4445555556666666666666666555444
No 231
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.15 E-value=1.1e+02 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAERENELQA 135 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~ 135 (258)
+..+..+|.+|+.++..+..+++.
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 232
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.06 E-value=99 Score=30.87 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+++..+..+..++.+++++.+++|+.|+++|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677778888888888888888888888888755
No 233
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.97 E-value=1.5e+02 Score=23.50 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
..|++++.......-||++|.|+..+-..|.+.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665555666666665555544444443
No 234
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=31.89 E-value=90 Score=23.89 Aligned_cols=29 Identities=31% Similarity=0.310 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
|+..-+...-...|.+|.++|++|..|+.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555566777777777777777764
No 235
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.70 E-value=96 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.+++..+..++..++..+..+..+++.+++.+
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 236
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=31.61 E-value=70 Score=26.86 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..-+++..++.|.-++......++.+|++|..++.+.+.
T Consensus 54 ~lh~ri~~leeEryd~E~kv~k~~~Ei~elk~kv~d~rg 92 (132)
T PF00992_consen 54 ELHERIDKLEEERYDLEEKVAKQDYEIEELKKKVNDLRG 92 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhHHHHHcc
Confidence 667788889999999999999999999999998855433
No 237
>PRK09039 hypothetical protein; Validated
Probab=31.51 E-value=65 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+++..|+.+....+++.++..++|++|+++|+.+
T Consensus 151 ~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 151 RQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555556666666554
No 238
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.41 E-value=1.5e+02 Score=25.01 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..++++.+.+.+.+...+.|.++++.+..+++++....++
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666666666666666666666654443
No 239
>PTZ00420 coronin; Provisional
Probab=31.24 E-value=1.1e+02 Score=31.75 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMS-NMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~E-N~~Lkk~I~Eke~eIe~L~ 137 (258)
+.+++...++.| ++.|+.++++|+++|.+|+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (568)
T PTZ00420 416 NYTSKRTSIIRQFTKKFTFFKKGEHNDGFSSV 447 (568)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 666677888999 9999999999999999999
No 240
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=31.10 E-value=16 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+|+.+...|+.+++++.+++++|+++..+
T Consensus 16 ~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 16 SDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ---------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444444444444444444433
No 241
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=31.07 E-value=1.8e+02 Score=29.18 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+..++..|..+-.+-|+++++.|..|++.|..+..
T Consensus 79 ~~~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~ 113 (408)
T PLN03193 79 DSKDIIGEVSKTHNAIQTLDKTISNLEMELAAARA 113 (408)
T ss_pred chhHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHh
Confidence 44567777888888899999999999999988665
No 242
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=30.99 E-value=1e+02 Score=26.81 Aligned_cols=34 Identities=9% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+++..+..|++++-+++.+|+.++.....++..
T Consensus 103 s~~~~~~~~er~el~e~v~~KN~qLk~iid~lR~ 136 (150)
T PF11315_consen 103 SEEYRQLLEERKELIEQVKQKNQQLKEIIDQLRN 136 (150)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668888888888888888888888777644
No 243
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=30.86 E-value=41 Score=28.37 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHhhhhhcc-CCCchHHHHHHHHHHHHHHHHHHHhhhhceeeeecCCCCcchhhh
Q psy3590 38 GAAISFVIS-DKQDASFVIISLFILFCTTATLCLVFVPKIVELKRNPQGSIDKRI 91 (258)
Q Consensus 38 ~vPVs~vl~-s~pd~~f~lisl~IifcTT~tL~LLFVPKv~~i~~~P~~~~d~r~ 91 (258)
++.+.++.+ ..|.....+.+++|++++.....|+ .|+|+.+ .+.+.
T Consensus 45 tii~afvf~~~~p~p~~iffavcI~l~~~s~~lLI------~WYR~gd--l~Pkf 91 (118)
T PF10856_consen 45 TIISAFVFPQDPPKPLHIFFAVCILLICISAILLI------FWYRQGD--LDPKF 91 (118)
T ss_pred HHhheEEecCCCCCceEEehHHHHHHHHHHHHhhe------eehhcCC--CChhH
Confidence 444455555 4466666677788887777666654 4666554 34443
No 244
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=30.68 E-value=1.1e+02 Score=29.53 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+.+...|+.+++++..++.+++.+++.+++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888888888888888764
No 245
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=30.66 E-value=75 Score=30.55 Aligned_cols=22 Identities=9% Similarity=0.301 Sum_probs=11.7
Q ss_pred ccchhhhHH-HHHHHHHHHHHhh
Q psy3590 20 DSKYVGMSV-YNVVLMCIMGAAI 41 (258)
Q Consensus 20 ESK~Ig~SV-YnV~VlslI~vPV 41 (258)
+.|.-++++ |++..+.....|.
T Consensus 374 ~~Rg~~~g~~~~~~~~~g~~~p~ 396 (490)
T PRK10642 374 HIRYSALAAAFNISVLVAGLTPT 396 (490)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 345555663 7776554444443
No 246
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=30.58 E-value=1.2e+02 Score=25.83 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=11.2
Q ss_pred chhhhHHHHHHHH-HHHHHhhh
Q psy3590 22 KYVGMSVYNVVLM-CIMGAAIS 42 (258)
Q Consensus 22 K~Ig~SVYnV~Vl-slI~vPVs 42 (258)
+..+|.++.++++ |+++.|+.
T Consensus 14 s~~~f~~~~~~Ii~W~i~Gp~~ 35 (132)
T PF04120_consen 14 SPWAFVIAVAVIIVWAISGPVF 35 (132)
T ss_pred CHHHHHHHHHHHHHHHHHhccc
Confidence 3445555444443 77777763
No 247
>PF15456 Uds1: Up-regulated During Septation
Probab=30.44 E-value=82 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..|.++|||++.-++..|+.+++++.-
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~l 47 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLAL 47 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777778778777776653
No 248
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.29 E-value=1.1e+02 Score=23.23 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+.+|...+.++...+.++...++.+...+.+
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555544444
No 249
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.25 E-value=1.2e+02 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
+..|.+.-+..|++.++.+..|.
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le 28 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELE 28 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 250
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=30.24 E-value=1.1e+02 Score=27.43 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENE---LQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~e---Ie~L~~qL~~~~~ 145 (258)
+.+.++..|.+++..|+.+|..--.+ +...++||+++|.
T Consensus 127 ssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSRK~ 168 (179)
T PF13942_consen 127 SSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSRKQ 168 (179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccCC
Confidence 45667777777777787777663333 4445688888776
No 251
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.00 E-value=1.4e+02 Score=24.16 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
....+..+-+.++++++++++.++.|...+
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~ 110 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAE 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 252
>PRK14153 heat shock protein GrpE; Provisional
Probab=29.99 E-value=89 Score=28.15 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++..++.+..+++.++.-+.++.+-++++...
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554455555555555544
No 253
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.64 E-value=1.2e+02 Score=23.60 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
.|..|-..++.+|.++++++..++.++....
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666665543
No 254
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=29.62 E-value=87 Score=24.48 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.++.++.+|++++.+.+.+|.++...+
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566666666666666666665554
No 255
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.58 E-value=99 Score=23.48 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..++=...|+.+.+.++.+|.++++++..+..++.+.+.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667799999999999999999999999999886654
No 256
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.50 E-value=93 Score=30.86 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQ 134 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe 134 (258)
...++-..|+.||++|+.+++.+|++..
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677778899999999999999877665
No 257
>PLN02943 aminoacyl-tRNA ligase
Probab=29.39 E-value=51 Score=35.89 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+-+++.|..+|+|+|++++++|+.++.+|++..
T Consensus 884 ~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~ 916 (958)
T PLN02943 884 MVDISAEVERLSKRLSKMQTEYDALAARLSSPK 916 (958)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 345778888999999999999999999998754
No 258
>KOG2635|consensus
Probab=29.20 E-value=1.9e+02 Score=29.71 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q psy3590 105 SSELEEKLKDAKMSNMR--HRKILAERENELQALLSRL 140 (258)
Q Consensus 105 s~~~eEri~~L~~EN~~--Lkk~I~Eke~eIe~L~~qL 140 (258)
+..-|||++++..+|++ .+++.++|.+||+.-+..-
T Consensus 136 MdSHEEKi~e~v~~nke~ea~q~mkrKaKElqr~r~ea 173 (512)
T KOG2635|consen 136 MDSHEEKIHELVMRNKEREAKQEMKRKAKELQRARKEA 173 (512)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34568999998877754 5666666777776544433
No 259
>PRK14011 prefoldin subunit alpha; Provisional
Probab=29.15 E-value=1.5e+02 Score=25.43 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..+.|+..|+..-..+...|.+++.+++++++.|..+..+
T Consensus 92 ~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 92 DFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888999999999999999999777664443
No 260
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=29.03 E-value=1.4e+02 Score=24.29 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
-.+|+...=..+.+.|+-.|.+++.+|..|+.+|
T Consensus 60 m~EEk~~yD~e~ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 60 MAEEKAEYDQEAIESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567776667788888889999999999998876
No 261
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.99 E-value=1.1e+02 Score=27.84 Aligned_cols=30 Identities=37% Similarity=0.429 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.+..|+.++..++..+.+++++++.++.++
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~ 84 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRL 84 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655444
No 262
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=28.90 E-value=87 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+++.++..+...+.++...++++-++|+..|.
T Consensus 26 ~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 26 KRYNKVLLDRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555443
No 263
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=28.89 E-value=81 Score=30.88 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+...|+.+|+.++.++.+...+++.+++++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKR 61 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666544
No 264
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.84 E-value=1.4e+02 Score=25.95 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..+.++..|+.++..|+..+..++.+|.+....+
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666665555443
No 265
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.80 E-value=1.2e+02 Score=24.88 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
-..+++.+...+++++.+++++++.+.+++...+.
T Consensus 37 ~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~ 71 (158)
T PF03938_consen 37 AQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456777778888888888888888887776544
No 266
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.64 E-value=1.9e+02 Score=21.44 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
++..|+.-+....+.|...+++|++++
T Consensus 21 ~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 21 RIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 267
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=28.59 E-value=1e+02 Score=25.55 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
++.|+++||.+++.|++-+.....++.
T Consensus 40 lkEEi~eLK~ElqRKe~Ll~Kh~~kI~ 66 (106)
T PF11594_consen 40 LKEEINELKEELQRKEQLLQKHYEKID 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 268
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.53 E-value=1.2e+02 Score=26.81 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+....++.+.+.+++++.+.+++|..+++++...+.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444456777778888888888888888888887755
No 269
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=28.45 E-value=1.7e+02 Score=21.45 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E 128 (258)
....+...|+.+|.+||..+++
T Consensus 37 ~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556778888888777764
No 270
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.41 E-value=1.5e+02 Score=30.43 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILA-------ERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~-------Eke~eIe~L~~qL~~~~~ 145 (258)
+.+++..+|+.+-+.+|+++. +.+++|++|+..+..-+.
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 555566778888888876655 455556666655554333
No 271
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=28.32 E-value=1.2e+02 Score=23.09 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAEREN 131 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~ 131 (258)
+..+++..|..||..||.-|.+-|-
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~ 27 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQ 27 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3467788888888888888877543
No 272
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=28.18 E-value=1.6e+02 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++.++-.+|+.--+.+|++++|+|-++++--++|.+
T Consensus 142 eER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 142 EEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555777777788888888888888877666654
No 273
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.15 E-value=85 Score=27.41 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+..+...|++++.++|.+|..+.++|.+
T Consensus 24 hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 24 HQENQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666555555554
No 274
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.12 E-value=1.1e+02 Score=26.56 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=7.3
Q ss_pred HHhhhhceeeeec
Q psy3590 69 CLVFVPKIVELKR 81 (258)
Q Consensus 69 ~LLFVPKv~~i~~ 81 (258)
.-+++|++..++.
T Consensus 49 ~k~l~~PI~~~l~ 61 (181)
T PRK13454 49 TRVALPRIGAVLA 61 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3344676666554
No 275
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.12 E-value=1.8e+02 Score=27.13 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLAL 147 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl 147 (258)
+.-+||..||.|...||.||++ |-.++++-+.....+
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~----IV~~qe~~~~~~~~~ 155 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAK----IVAAQEQSNSTTPDL 155 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhccccccccCccc
Confidence 3446888899999999999998 777777766655544
No 276
>KOG3583|consensus
Probab=28.08 E-value=1.7e+02 Score=27.66 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMS-----NMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~E-----N~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.|++...|.+| +.--.|+|+..|+.|+-|-+.|++..+.
T Consensus 115 e~E~~e~ql~~~aa~~saDaa~kQI~~yNK~is~ll~~lsk~~re 159 (279)
T KOG3583|consen 115 EMENEEGQLDGEAAAKSADAAVKQIAAYNKNISGLLNHLSKVDRE 159 (279)
T ss_pred hhHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666565555 4556789999999999999999875553
No 277
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.00 E-value=1.6e+02 Score=24.17 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..+.++..|+.....+++.+.+.+.+|.++.++.+
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566666666666666666666666666655543
No 278
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.97 E-value=1.3e+02 Score=25.93 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=15.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKM---SNMRHRKILAERENELQ 134 (258)
Q Consensus 107 ~~eEri~~L~~---EN~~Lkk~I~Eke~eIe 134 (258)
...+++.+|+. .|++|+++|.++.++..
T Consensus 38 ~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 38 EADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34445555555 56666666666555555
No 279
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=27.89 E-value=1.5e+02 Score=25.64 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRH---------RKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~L---------kk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..++++.+|+.+...- |++..+.+.+|..|+++|++++-
T Consensus 38 ~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 38 ALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 6667777776655555 35677788899999999988765
No 280
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.88 E-value=1.3e+02 Score=29.50 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
..+++...++.+++.+++++.+++++++.|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 33 FLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555555555555554
No 281
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.69 E-value=1.4e+02 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+..|-.||+-|+.+|.+.++|.+.+++.++.=|.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668999999999999999999999998877443
No 282
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.58 E-value=1.3e+02 Score=24.12 Aligned_cols=34 Identities=35% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDA--KMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L--~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..|.++..| ..+-+.|+.+|++.+.++..+..++
T Consensus 53 ~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 53 ALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444433 3334444444444444444333333
No 283
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=27.52 E-value=2.3e+02 Score=26.44 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
|-+..-...+-|++.+++|++|+.+|.
T Consensus 46 laQ~vlvQE~AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 46 LAQTVLVQEQALKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566777777777777773
No 284
>PRK09546 zntB zinc transporter; Reviewed
Probab=27.36 E-value=1.6e+02 Score=27.44 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q psy3590 27 SVYNVVLMCIMGAAISFVI 45 (258)
Q Consensus 27 SVYnV~VlslI~vPVs~vl 45 (258)
.+|..++++++++|.+++.
T Consensus 263 ~m~~Ltilt~IflPlT~Ia 281 (324)
T PRK09546 263 RTYTMSLMAMVFLPTTFLT 281 (324)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778889999999987763
No 285
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=27.31 E-value=1.5e+02 Score=25.20 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILA-------ERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~-------Eke~eIe~L~~qL~~ 142 (258)
.-+|.|..|+.||+.||.-+. +-.+.|+.|+++|..
T Consensus 82 aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 82 AKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 346667777788877766544 456778888888864
No 286
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.21 E-value=1.2e+02 Score=28.59 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy3590 121 RHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 121 ~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.++..|.++++++.+++.++++
T Consensus 241 ~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 241 ELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 287
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=27.13 E-value=1.2e+02 Score=31.18 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
++...+++.|-.++.+++++++++++++++++.
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666665554
No 288
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=27.02 E-value=1.3e+02 Score=25.65 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...|++..+..++..++.+|.+++.++..++..+..
T Consensus 81 h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~ 116 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELKDREEELAKLREELYR 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999999999999888865
No 289
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.99 E-value=96 Score=29.96 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
...+|++.|+.||..||.+...+..+-..+.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 7889999999999999999988775544443
No 290
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=26.93 E-value=1.2e+02 Score=29.57 Aligned_cols=24 Identities=21% Similarity=-0.087 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERE 130 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke 130 (258)
...++-.+|+.||.+|+.++.+.+
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 61 VLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666778999999988887754
No 291
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.64 E-value=1.5e+02 Score=24.24 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.++..|..+.+.|+.++..+..++..+...+.+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e 38 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINE 38 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444433
No 292
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.62 E-value=1.6e+02 Score=26.25 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..|+-|++.|.++..+.+.+-++|.++...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668888999999999999999998888888877654
No 293
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.57 E-value=1.6e+02 Score=26.60 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++..|+.|.+.++....++++.++..++++.+
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 294
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=26.55 E-value=1.2e+02 Score=26.60 Aligned_cols=20 Identities=5% Similarity=0.164 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHhhhhhc
Q psy3590 26 MSVYNVVLMCIMGAAISFVI 45 (258)
Q Consensus 26 ~SVYnV~VlslI~vPVs~vl 45 (258)
-+|+..++++++++|++++.
T Consensus 232 ~~m~~LT~~t~iflPlt~i~ 251 (292)
T PF01544_consen 232 RVMKVLTIVTAIFLPLTFIT 251 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35777888999999987654
No 295
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=26.53 E-value=71 Score=34.25 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+++.|.++|+++|.+++++|+.++.+|++..
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~ 838 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEG 838 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 4677888899999999999999999998743
No 296
>PRK01203 prefoldin subunit alpha; Provisional
Probab=26.45 E-value=1.7e+02 Score=24.93 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..|+..-+.|++.|.+|.+.++.++.+++.
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~ 119 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNT 119 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999999999999999998876
No 297
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.27 E-value=1.1e+02 Score=30.21 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHhhhcccC
Q psy3590 119 NMRHRKILAE---RENELQALLSRLGSESLA 146 (258)
Q Consensus 119 N~~Lkk~I~E---ke~eIe~L~~qL~~~~~k 146 (258)
|.+.++++.. .|+..|.|++++.+.++.
T Consensus 94 tdeekaq~eAlggi~kl~Etl~e~leeq~~r 124 (393)
T COG3825 94 TDEEKAQVEALGGIDKLMETLKERLEEQKER 124 (393)
T ss_pred CHHHHHHHHHhcCcchhHHHHHHhHHHhhcC
Confidence 3466777766 588999999999998874
No 298
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=26.19 E-value=1.5e+02 Score=26.19 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE-RENELQALLSRLGSESLALPSSGPHGKTPPGQPPGKSLPSALKPPQ 174 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E-ke~eIe~L~~qL~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (258)
++..++..-+.+-..+|.++++ ++++-+.++-++...+.+ -..+--+++|-.+++|.
T Consensus 34 ~Eq~el~~y~~d~~~yK~~~k~~l~er~~~~~~~~~~~~~~-----------~~~~~~~~~Pk~PkkPs 91 (159)
T cd00225 34 DEQQELAQYVEDVADYKEEVKQALKERQEGLKLRRAGKKKK-----------AVTLAEEKLPKAPKKPS 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-----------ccccccccCCCCCCCCC
Confidence 3444444455555566655554 222233444444433333 12223566777776664
No 299
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.15 E-value=85 Score=28.67 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSN-MRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN-~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
+-+++..+++++| ...-++|+|+..|+...|+++...+-|.|
T Consensus 83 efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM 125 (201)
T COG1422 83 EFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPM 125 (201)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4444554444433 33345677777778788877777655544
No 300
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.09 E-value=1.4e+02 Score=22.05 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
..|+|+..|+.+-+.-+++...-+.+++..
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888876666666666666655543
No 301
>KOG2391|consensus
Probab=26.04 E-value=96 Score=30.66 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhHHH
Q psy3590 206 CHALKHLKRLLQSQHY 221 (258)
Q Consensus 206 ~~~~~~~~~~~~~~~~ 221 (258)
---|||.+-|-..|.+
T Consensus 334 ~~yLr~VR~lsReQF~ 349 (365)
T KOG2391|consen 334 DQYLRHVRLLSREQFI 349 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457777666655544
No 302
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=25.97 E-value=81 Score=24.88 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++.+-..|+..+.+.+++.+.|.++|..
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666654
No 303
>PRK09039 hypothetical protein; Validated
Probab=25.92 E-value=1.4e+02 Score=28.62 Aligned_cols=31 Identities=23% Similarity=0.080 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+..|..|.+.||++|+.++++|+..+++..+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~ 169 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRE 169 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544433
No 304
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.88 E-value=1.6e+02 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.+.+.+|+.+-.+++-++.+.+++|+.+.+++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666665554
No 305
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.87 E-value=1.6e+02 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+++|..|...|..+..++.+.+.++...+..+.+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555554444444433
No 306
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=25.84 E-value=76 Score=28.08 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILA 127 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~ 127 (258)
...|.+.+|+.||+.||+.|.
T Consensus 157 ~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 157 EEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 677888889999999988764
No 307
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.44 E-value=1.9e+02 Score=26.30 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..++++..|+.|..+++.++....++.+-++++...+++
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e 73 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVA 73 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999988876544
No 308
>KOG2933|consensus
Probab=25.28 E-value=1.6e+02 Score=28.96 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCccchheeehhhcccCCCcccCCC-----------hhhHHHHHHHHHHHHH
Q psy3590 148 PSSGPHGKTPPGQPP---GKSLPSALKPPQPEALTVVKRELLVPNNHGILSED-----------PFYYWKALCHALKHLK 213 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 213 (258)
+.|.-+..++++.+| ....|.+.--|.+|-+ .+.-|.+++.|---+++- --++|.-.|-+|+-+.
T Consensus 35 ~~gs~e~~p~~~~~pl~h~~~t~~~~~~~~~e~~-~~~~e~~~sk~l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~ir 113 (334)
T KOG2933|consen 35 MSGSHEDKPPTNHPPLDHNSPTPQEAIKQEGERL-IHSVEYIVSKNLSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIR 113 (334)
T ss_pred ccCccccCCCCCCCCccccCCCchhhhccccccc-cccHHHhhhcccCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHH
Confidence 556667777766654 2223333333444444 445566777776554421 2478999999999998
Q ss_pred HHHHhHHHHH---HHhhcCceeeccCcchhhHHHHhhhh
Q psy3590 214 RLLQSQHYEM---MLKQTNPVMVRPATHYQVDLMRSACQ 249 (258)
Q Consensus 214 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (258)
||- .-|-|+ ||+.++..+|+--..-.--.-|.||+
T Consensus 114 rLs-~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~ 151 (334)
T KOG2933|consen 114 RLS-EFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACM 151 (334)
T ss_pred HHH-hhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 875 456666 56667777776544433344455554
No 309
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.20 E-value=2.3e+02 Score=20.96 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+.++..++...+.+.+..+..+.+|..+.++|++
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~ 45 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEK 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666667777777777665
No 310
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=25.15 E-value=1.8e+02 Score=23.49 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=6.0
Q ss_pred HHHhhhhceeeee
Q psy3590 68 LCLVFVPKIVELK 80 (258)
Q Consensus 68 L~LLFVPKv~~i~ 80 (258)
|..+|.|.+..++
T Consensus 22 l~~~l~~pi~~~l 34 (140)
T PRK07353 22 LNALFYKPVGKVV 34 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455444
No 311
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.08 E-value=1.8e+02 Score=23.99 Aligned_cols=31 Identities=32% Similarity=0.153 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
..++++..+..|-..||+.++++-+|-..|+
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777888877777655555554
No 312
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=24.93 E-value=1.2e+02 Score=27.86 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+.+-+..+|+.|+..|++++.+++.++..|..
T Consensus 128 ~~~~~~~el~~ek~kL~~q~~e~~e~lr~L~~ 159 (221)
T PF10376_consen 128 YEELKQQELEEEKRKLEKQVDEKEEELRRLKL 159 (221)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55667788999999999999999888877664
No 313
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=24.85 E-value=1e+02 Score=27.19 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+.++.+|+.||++|+.-+.|-..-++..=.+-.+
T Consensus 66 ~~En~qi~~Lq~EN~eL~~~leEhq~alelIM~KyRe 102 (181)
T PF05769_consen 66 QQENRQIRQLQQENRELRQSLEEHQSALELIMSKYRE 102 (181)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999966655554433333
No 314
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.80 E-value=1e+02 Score=22.09 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 120 MRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+.||++++.++.+++.|+..+..-+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999988877443
No 315
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.64 E-value=5.1e+02 Score=23.72 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKIL 126 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I 126 (258)
-..|++.+..+|.++|..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ 142 (197)
T PRK12585 123 IRQEQIEKARQEREELEERM 142 (197)
T ss_pred ccHHHHHHHHHhHHHHHHHH
Confidence 55777777788777776554
No 316
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=24.63 E-value=1.9e+02 Score=24.62 Aligned_cols=11 Identities=9% Similarity=-0.167 Sum_probs=5.1
Q ss_pred Hhhhhceeeee
Q psy3590 70 LVFVPKIVELK 80 (258)
Q Consensus 70 LLFVPKv~~i~ 80 (258)
.++.|.+..++
T Consensus 35 ~~~~kpi~~~l 45 (173)
T PRK13460 35 KFAWDVILKAL 45 (173)
T ss_pred HHhHHHHHHHH
Confidence 34445454444
No 317
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=24.58 E-value=43 Score=27.87 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+-+.++..+-..++..++.+.++++.|+++|++
T Consensus 73 ~~~~~~~~l~~~~~~~~~~l~~l~a~Le~l~~~L~~ 108 (109)
T PF03955_consen 73 EDVGSYSELKANLTALEDKLTALLAQLEALKQQLAE 108 (109)
T ss_dssp TS----SSTTSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455556666666777888888888888888764
No 318
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.41 E-value=39 Score=29.83 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAEREN 131 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~ 131 (258)
+.|.++.+..+.|.-|..+|.|||.
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~ 28 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKEN 28 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5577777777777777777777664
No 319
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.34 E-value=69 Score=26.70 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
++++..|+.+.++++.++..+.++++.+++++...+.
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~ 53 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKE 53 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777777777777777777655433
No 320
>KOG0614|consensus
Probab=24.34 E-value=2.9e+02 Score=29.40 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
...+++..-+.+...+.++|.+++.+|+.|++.+++...
T Consensus 35 ~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 35 RKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 334455555667778888888899999999988876433
No 321
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.33 E-value=2.3e+02 Score=27.46 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALPSSG 151 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~ 151 (258)
--|.+..-|++.++.-|++|..++.+|..++..|.........|+
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 335566778899999999999999999999988876544333333
No 322
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.33 E-value=60 Score=35.18 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhcccCCC
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLS---RLGSESLALP 148 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~---qL~~~~~kl~ 148 (258)
++...+.||..|.-.|.++|+||++|++ -|.+.+.+++
T Consensus 516 kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 516 KLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred hHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445678999999999999999988774 4566666666
No 323
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=24.22 E-value=2e+02 Score=24.48 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy3590 116 KMSNMRHRKILAE 128 (258)
Q Consensus 116 ~~EN~~Lkk~I~E 128 (258)
+....++++++.+
T Consensus 69 ~~~~~e~e~~L~~ 81 (175)
T PRK14472 69 EAILRKNRELLAK 81 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 324
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=24.04 E-value=1.6e+02 Score=30.74 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
...+++..|+.+|..|++++..+..+++.|+.+|...
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888899999999999999999999999999753
No 325
>KOG4552|consensus
Probab=24.04 E-value=1.6e+02 Score=27.57 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.+++-+.|++.+.+.|.+|+.|+.+|
T Consensus 72 ~e~~m~~Lea~VEkrD~~IQqLqk~L 97 (272)
T KOG4552|consen 72 REQLMRTLEAHVEKRDEVIQQLQKNL 97 (272)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555555555555666555555
No 326
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.88 E-value=2e+02 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q psy3590 123 RKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 123 kk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
|++....|++|..|+.+|.++.-
T Consensus 53 k~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 53 ADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhCEE
Confidence 45666789999999999998754
No 327
>PF15444 TMEM247: Transmembrane protein 247
Probab=23.79 E-value=1.6e+02 Score=26.90 Aligned_cols=36 Identities=31% Similarity=0.545 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHHHH
Q psy3590 32 VLMCIMGAAISFVISDKQDASFVIISLFILFCTTATLCL 70 (258)
Q Consensus 32 ~VlslI~vPVs~vl~s~pd~~f~lisl~IifcTT~tL~L 70 (258)
++.|.|++=+.+++-. ..|.+.+-..+||-..+|.|
T Consensus 176 flycfifihiiyvtke---mvfflfskhylfciaaillc 211 (218)
T PF15444_consen 176 FLYCFIFIHIIYVTKE---MVFFLFSKHYLFCIAAILLC 211 (218)
T ss_pred HHHHHHHHHHHHHhHH---HHHHHHHhHHHHHHHHHHHH
Confidence 3444555544444432 44555566667775544433
No 328
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.76 E-value=94 Score=26.18 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchheeehhhcccC
Q psy3590 119 NMRHRKILAERENELQALLSRLGSESLALPSSGPHGKTPPGQPPGKSLPSALKPPQPEALTVVKRELLVPN 189 (258)
Q Consensus 119 N~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (258)
-++|-.+|+++.-|-..|+++|.+-.. | ..+|.|+-||--.+|.++-.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~------------p-----------~~~p~~~~LTp~qKe~~I~s 52 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG------------P-----------GPSPDDEVLTPAQKEAMITS 52 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--------------------------S-TT--B--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC------------C-----------CCCCCccccChHHHHHHHHH
Confidence 355666777777777777777765322 1 23467788888888887643
No 329
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.76 E-value=2.6e+02 Score=23.30 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
....++.++++|...+|.+++.++++=+.+.+.|
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666555555554444
No 330
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=23.63 E-value=1.8e+02 Score=24.88 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=21.5
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhhccc
Q psy3590 118 SNMRH---RKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 118 EN~~L---kk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
||.+| |++..+.+.+|..|+.+|.+++-
T Consensus 43 ENaeY~aak~~~~~le~rI~~L~~~L~~A~i 73 (156)
T TIGR01461 43 ENADYQYGKKRLREIDRRVRFLTKRLENLKV 73 (156)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 55544 56777889999999999988655
No 331
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=23.57 E-value=2.3e+02 Score=20.23 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+|..+..+.+..+++|+.++.+|+.=+++
T Consensus 4 eL~~~l~~~e~~~~~k~~~v~eLe~YiD~ 32 (48)
T PF09457_consen 4 ELISLLKKQEEENARKDSRVRELEDYIDN 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778889999999999999999987665
No 332
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=23.55 E-value=1.5e+02 Score=28.61 Aligned_cols=29 Identities=0% Similarity=-0.079 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 118 SNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
|-.+|+.++..+..+.+++++|+...+++
T Consensus 79 e~~~l~~qvs~l~~~~~~~r~~~~~~~~~ 107 (389)
T PF06216_consen 79 EWISLNDQVSHLQHQNSEQRQQIREMREI 107 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666655554
No 333
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=23.54 E-value=2.2e+02 Score=22.29 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAE---------RENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~E---------ke~eIe~L~~qL~~~~~ 145 (258)
.+++..|+.+.++|+..+.. +..+|..++..+.+.+.
T Consensus 2 ~~~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 2 SEQIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777776665 56667777766666443
No 334
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.44 E-value=1.6e+02 Score=26.27 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+++...|+.+-..++..+.++...|..|++++..
T Consensus 96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~ 131 (219)
T TIGR02977 96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAE 131 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555556666666666666666666666666655
No 335
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=23.37 E-value=80 Score=22.27 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy3590 125 ILAERENELQALLSRL 140 (258)
Q Consensus 125 ~I~Eke~eIe~L~~qL 140 (258)
+|..|+.+|+.+...|
T Consensus 4 Ql~~kd~qI~~l~kLL 19 (45)
T PF04394_consen 4 QLEEKDKQIEELQKLL 19 (45)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 336
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=23.29 E-value=2.4e+02 Score=22.62 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E 128 (258)
..+.+...|..||+.|+.++.-
T Consensus 53 ~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 53 ELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 337
>PF14282 FlxA: FlxA-like protein
Probab=23.17 E-value=2.8e+02 Score=22.24 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q psy3590 129 RENELQALLSRL 140 (258)
Q Consensus 129 ke~eIe~L~~qL 140 (258)
+.++|..|+.+|
T Consensus 56 Lq~QI~~LqaQI 67 (106)
T PF14282_consen 56 LQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 338
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.07 E-value=1.1e+02 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...++..+|+.|++.+++++...+.-++.+-.++-.
T Consensus 43 ~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~ 78 (308)
T PF11382_consen 43 SLREENDELRAELDALQAQLNAADQFIAAVAPRLVA 78 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667788889999999999999999999988877744
No 339
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.96 E-value=1.5e+02 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
++-...|....+.+...|.+.+++++.+..++.+.+.
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555566666666666666666666655443
No 340
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=22.92 E-value=1.8e+02 Score=28.95 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3590 119 NMRHRKILAERENELQALLSR 139 (258)
Q Consensus 119 N~~Lkk~I~Eke~eIe~L~~q 139 (258)
..+|+++|+++.+||..|+++
T Consensus 44 i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 44 ISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666655
No 341
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.86 E-value=1.7e+02 Score=22.68 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
...++++..|+.+...++-++.-.+++++.|+
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46777777777777777777777777777653
No 342
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=22.82 E-value=48 Score=37.96 Aligned_cols=51 Identities=33% Similarity=0.539 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchheeehhhcccCCCccc---CCChhhHHHHH
Q psy3590 155 KTPPGQPPGKSLPSALKPPQPEALTVVKRELLVPNNHGIL---SEDPFYYWKAL 205 (258)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 205 (258)
+|||++|||-.-||.+.||.|..+.|-||.-.-+.-||-+ +.+|-|-|.+-
T Consensus 9 ppppppppg~epps~pppPppPg~~~~~r~~k~~~~~g~~~~~~g~~~~~~r~S 62 (2365)
T COG5178 9 PPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQLSIVGDILGHSGNPIYSLRVS 62 (2365)
T ss_pred CcccccCCCCCCCCCCCCccCCCcchhhhccccHHHhhhhhhhcCCcceeeecc
Confidence 4455556787888999999888888877766666656533 56788888654
No 343
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=22.82 E-value=2.3e+02 Score=21.31 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
..+|.+.||.+|.++++++..|+.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~ 35 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEE 35 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666553
No 344
>PF14992 TMCO5: TMCO5 family
Probab=22.77 E-value=1.6e+02 Score=28.16 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+.+...++|-..|+.+=+.|.++|..|++|.+.+.
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777778899999999999999999999887763
No 345
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=22.72 E-value=3.2e+02 Score=26.42 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
...++...|+..|+++|++|++....|+-|++-|
T Consensus 82 ~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~ 115 (389)
T PF06216_consen 82 SLNDQVSHLQHQNSEQRQQIREMREIIEGLREPV 115 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445555566666666666666666666665543
No 346
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.69 E-value=68 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
-..|++.+|+.+|.-+-+.+.|.+++.+...+++.+.+.
T Consensus 40 l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~s 78 (230)
T PF03904_consen 40 LENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKS 78 (230)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788889998887777777766666666665555444
No 347
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.63 E-value=1.1e+02 Score=31.35 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
-.+++.|+++++++..|+.+|+.+|..+..
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345677777777777777777777766544
No 348
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.54 E-value=1.9e+02 Score=22.22 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 116 KMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+.+.+.|++++..|.+.|..+++++
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555666666666665543
No 349
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.44 E-value=2.1e+02 Score=21.87 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHHHHhhhhceeeeecCCC
Q psy3590 31 VVLMCIMGAAISFVISDKQDASFVIISLFILFCTTATLCLVFVPKIVELKRNPQ 84 (258)
Q Consensus 31 V~VlslI~vPVs~vl~s~pd~~f~lisl~IifcTT~tL~LLFVPKv~~i~~~P~ 84 (258)
+++..++...+.+++.+ ..+ .+.+...+++..+++++|-...-.++|-
T Consensus 17 l~~~~iisfi~Gy~~q~---~~~---~~~~~~~g~~~~~lv~vP~Wp~y~r~p~ 64 (76)
T PF06645_consen 17 LIISAIISFIVGYITQS---FSY---TFYIYGAGVVLTLLVVVPPWPFYNRHPL 64 (76)
T ss_pred HHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHhheeCCcHhhcCCcc
Confidence 33344455555566654 222 2333445556668899997766555554
No 350
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.41 E-value=1.9e+02 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
.+...+..|...++.+|.+.+++|+.|+.
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555544443
No 351
>PF14772 NYD-SP28: Sperm tail
Probab=22.31 E-value=2.3e+02 Score=22.15 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..++.......+.|..||+-|.+|++.|..+.+.
T Consensus 58 ~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deq 91 (104)
T PF14772_consen 58 KEIEEQKQACERIIDRKDALIKELQQELKEADEQ 91 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777788888999999999999999876543
No 352
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=22.27 E-value=97 Score=33.82 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
-+++.|..+|+++|++.+++|+.++.+|++..
T Consensus 925 id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~ 956 (995)
T PTZ00419 925 IDLKKELAKLEKKLAKLQKSLESYLKKISIPN 956 (995)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 34778888899999999999999999998744
No 353
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=22.14 E-value=4.7e+02 Score=22.17 Aligned_cols=104 Identities=31% Similarity=0.455 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhh--cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3590 102 RRDSSELEEKLKDAKMSNMRHRKILAERENELQAL--LSRLGS--ESLALPSSGPHGKTPPGQPPGKSLPSALKPPQPEA 177 (258)
Q Consensus 102 ~rss~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L--~~qL~~--~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (258)
++++..-|+++.+++...+++...+.=+|+++.+. .+.+.. .....-........++.++...+.+.+..++++.+
T Consensus 13 N~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpgLe~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 92 (148)
T PF10152_consen 13 NRFASVCEEKLSDMEQRLQRLEATLNILEAKLSSIPGLEDVTDEASVPPPPVPAPSSGGPPPPPPAAAEAPAPPPPAPSA 92 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCccccccCCCCCCccccccCCCCCcccccC
Q ss_pred hheeehhhcccCCCcccC-CChhh--HHHHH
Q psy3590 178 LTVVKRELLVPNNHGILS-EDPFY--YWKAL 205 (258)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~ 205 (258)
-.-.-.+--.+...|..- +||-| |.|-|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~dP~y~kYfKMl 123 (148)
T PF10152_consen 93 ADPAEPEPEAPAEGGVTVKDDPRYAKYFKML 123 (148)
T ss_pred CCcccCCCcccccccccccCCccHHHHHHHH
No 354
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=22.06 E-value=1.8e+02 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 120 MRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
.+..++|.+++++|+.|+.++..+
T Consensus 178 ~~~~~~i~~L~kei~~L~~~~~kE 201 (221)
T PF14335_consen 178 IERLEQIEKLEKEIAKLKKKIKKE 201 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445566666666666665543
No 355
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.05 E-value=1.9e+02 Score=22.73 Aligned_cols=13 Identities=15% Similarity=-0.002 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILA 127 (258)
Q Consensus 115 L~~EN~~Lkk~I~ 127 (258)
|+.+|+.|..+..
T Consensus 30 LKEknn~l~~e~q 42 (79)
T COG3074 30 LKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHhhHhHHHHH
Confidence 4444444433333
No 356
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=22.01 E-value=1e+02 Score=21.70 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhHHHHHHHhh
Q psy3590 208 ALKHLKRLLQSQHYEMMLKQ 227 (258)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~ 227 (258)
.+.-|+++|++.|+..+++-
T Consensus 22 ~~~eL~~lL~~p~~~aLl~~ 41 (56)
T PF02828_consen 22 DAQELQQLLQSPHFQALLEV 41 (56)
T ss_dssp HHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 56789999999999988863
No 357
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.98 E-value=1.7e+02 Score=27.66 Aligned_cols=8 Identities=38% Similarity=0.841 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q psy3590 29 YNVVLMCI 36 (258)
Q Consensus 29 YnV~Vlsl 36 (258)
||+++.|+
T Consensus 35 YnITisSI 42 (290)
T COG4026 35 YNITISSI 42 (290)
T ss_pred ceeEEEee
Confidence 55555444
No 358
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.86 E-value=5.1e+02 Score=23.85 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+.++.+|+++++++.-+|.+..++=.++-..|++
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444444333333
No 359
>KOG3088|consensus
Probab=21.85 E-value=1.5e+02 Score=28.77 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.|..+-+++|..|++||++=++.+.+
T Consensus 66 q~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 66 QAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 444444444455555555555555544
No 360
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=21.82 E-value=60 Score=28.11 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 120 MRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..|+++|.+|.++|+.+++.+.+.++
T Consensus 134 ~~me~Ql~~kr~~i~~i~~~~~~~~~ 159 (162)
T PF05983_consen 134 MMMEEQLEEKREEIEEIRKVCEKARE 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888777654
No 361
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.80 E-value=1.9e+02 Score=28.13 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy3590 126 LAERENELQALLSRLGS 142 (258)
Q Consensus 126 I~Eke~eIe~L~~qL~~ 142 (258)
|.||-++|.+|+++|..
T Consensus 189 LNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 189 LNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 34566677777777755
No 362
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.78 E-value=80 Score=25.09 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
....+.+..|..||..|+.++.+++.++..++.+...
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~ 64 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELREEEES 64 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 3677778888888888888888888888877665544
No 363
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.74 E-value=1.9e+02 Score=25.73 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
..++++.+-..++.++...|.+++..|.+|+++
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 334444433444455555555555555555554
No 364
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.72 E-value=1.6e+02 Score=29.31 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=27.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Q psy3590 100 KTRRDSSELEEKLKDAKMSNMRHRKI-------LAERENELQALLSRLGS 142 (258)
Q Consensus 100 ~t~rss~~~eEri~~L~~EN~~Lkk~-------I~Eke~eIe~L~~qL~~ 142 (258)
++..+....|+-+.++++||..++.+ ..||++|-+.|.+.|++
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33344456777777777777766554 45566677777666654
No 365
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=21.69 E-value=5.3e+02 Score=22.35 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+--|-+.++..|-++...+..++-..|+.|++.+..+.
T Consensus 17 Ek~ELLdrfd~ER~eWE~Q~kemq~kieql~~e~~~~r 54 (141)
T PF14818_consen 17 EKMELLDRFDRERQEWEQQWKEMQRKIEQLQKEVKPRR 54 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 55666777888889999999999999999998887764
No 366
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=21.63 E-value=1.7e+02 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
-+.+|+...+.|.+++..++.+|+.+..++.....
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~ 36 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIK 36 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888877555
No 367
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.62 E-value=2.5e+02 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+...-|+.....++++|+++++.++.|...+
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666555555555544
No 368
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.58 E-value=2e+02 Score=25.35 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
...++++..|+.|..+++.++.-..++.+-+++|...+++
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e 62 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVE 62 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788889999999998888888888888888877554
No 369
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=21.57 E-value=2.3e+02 Score=28.62 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+...++.+|-.+-+.|-+.+.+-.+..+.=+++|++
T Consensus 80 ~g~dEIgeLa~~fn~Lt~~~~~aq~n~e~Er~kL~S 115 (459)
T COG5002 80 YGTDEIGELADSFNDLTKRVQEAQANTEQERRKLDS 115 (459)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455667777777777777777766666666777755
No 370
>KOG0709|consensus
Probab=21.50 E-value=63 Score=32.96 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..|.|...--.||++|++++.++|++-+.|.+||.+
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 556666666789999999999999999999998866
No 371
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.20 E-value=2.2e+02 Score=27.67 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+.|+++..++.....+...+++++.+|..+..+|..
T Consensus 147 ~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 147 DELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888888888888888777764
No 372
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.19 E-value=2.3e+02 Score=26.81 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.+++..+..+.+.+|+.+.+++.+++.++..+
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 373
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=21.16 E-value=2.7e+02 Score=23.29 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=3.7
Q ss_pred hhhceeeee
Q psy3590 72 FVPKIVELK 80 (258)
Q Consensus 72 FVPKv~~i~ 80 (258)
+.|.+..++
T Consensus 26 ~~kpi~~~l 34 (159)
T PRK13461 26 FFDKIKAVI 34 (159)
T ss_pred hHHHHHHHH
Confidence 334444433
No 374
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.15 E-value=1.7e+02 Score=29.50 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRK-------ILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk-------~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
..+.++-+++.|-..|+. +|..++.+|+.|++|+.+.+.++-
T Consensus 290 ~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 290 GFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 455555556666665554 355577889999999998888754
No 375
>PHA03006 hypothetical protein; Provisional
Probab=21.13 E-value=1.2e+02 Score=29.30 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE--RENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E--ke~eIe~L~~qL~~ 142 (258)
.-+++++.|+.|+.+||++-.. +..-++.+...|..
T Consensus 154 s~~krIKlLEeEv~eLKkkq~~~~kS~NL~nFTK~Lfg 191 (323)
T PHA03006 154 SKTEIIKKLKDENKELKKKQKKMEKSENLNELIKKLNG 191 (323)
T ss_pred cHhHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHcc
Confidence 4578899999999999887544 77778888877744
No 376
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.12 E-value=1.6e+02 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+|.-..++.|.+.++..+...|+++..|++
T Consensus 35 ~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 35 PEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 555567889999999999999999999887
No 377
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=21.11 E-value=3.9e+02 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 120 MRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+.+..+|.+||.+++.|...|.....
T Consensus 399 ~~~~e~i~~kE~eLe~L~~elDdkvR 424 (492)
T PF06273_consen 399 ESLREEISQKEKELEKLTRELDDKVR 424 (492)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56778899999999999999987554
No 378
>KOG4603|consensus
Probab=21.10 E-value=2e+02 Score=26.16 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q psy3590 106 SELEEKLKDAKM--SNMRHRKILAERENELQALLSRLGSESLALPSSGPHGKT 156 (258)
Q Consensus 106 ~~~eEri~~L~~--EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~~~~~ 156 (258)
++++.+|..|.. ...+|++.|+++.++...++++|.+-+. |..|-.|
T Consensus 103 s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~----g~~~vtp 151 (201)
T KOG4603|consen 103 SYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA----GTNHVTP 151 (201)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCH
No 379
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.08 E-value=1.6e+02 Score=29.35 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhh
Q psy3590 61 LFCTTATLCLVFV 73 (258)
Q Consensus 61 ifcTT~tL~LLFV 73 (258)
+|++...++..|.
T Consensus 45 ~f~~iss~gwff~ 57 (401)
T PF06785_consen 45 VFSIISSLGWFFA 57 (401)
T ss_pred ehHHHHHhHHHHH
Confidence 3445555665554
No 380
>KOG4370|consensus
Probab=21.00 E-value=2.5e+02 Score=28.83 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRH-------RKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~L-------kk~I~Eke~eIe~L~~qL~~ 142 (258)
+..+.+.+|+.+|++| ++.|.|.-.+|-+++++++.
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~ 452 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNL 452 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666554 55555555555555555543
No 381
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.95 E-value=1.3e+02 Score=27.38 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 118 SNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
|.-+||++|+++|++|+..++...++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
No 382
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.86 E-value=3.5e+02 Score=23.41 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=3.3
Q ss_pred CCcccCCC
Q psy3590 190 NHGILSED 197 (258)
Q Consensus 190 ~~~~~~~~ 197 (258)
+|++-+++
T Consensus 150 ~~~~~~~~ 157 (199)
T PF10112_consen 150 SQPVKSEE 157 (199)
T ss_pred hccCCChh
Confidence 34444443
No 383
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.85 E-value=2.8e+02 Score=23.31 Aligned_cols=32 Identities=25% Similarity=0.098 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
+..++++..+..|...+|+.+.++-+|-..|+
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 36778888888888888888877555544444
No 384
>KOG1962|consensus
Probab=20.70 E-value=1.4e+02 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 116 KMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
+.++..|+++..+++.|.+.|.
T Consensus 178 ~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHcccHHHHHH
Confidence 3334444444444444444443
No 385
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.65 E-value=2.7e+02 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
.+.+++|+.....+|..- |+||..|+.+|.++.
T Consensus 45 r~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 45 RQKVYELEQAHRKMKQQY---EEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhC
Confidence 344444554444444443 667888888887654
No 386
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=20.63 E-value=2e+02 Score=29.40 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+...+...|...|++|...+++-..+|+.|+++|..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 40 (512)
T TIGR03689 5 ELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQ 40 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999999988866
No 387
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=20.63 E-value=1.1e+02 Score=32.61 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
.+.+...|..++.+++.+.+.+|+.++.+|++..
T Consensus 810 ~~~d~~~e~~~l~k~l~~~~~~i~~~~~kl~n~~ 843 (861)
T TIGR00422 810 GLINKAKELARLQKQLDKEKKEVIRIEGKLENEG 843 (861)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHhhhcCch
Confidence 4556778888999999999999999999998843
No 388
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.49 E-value=2e+02 Score=26.15 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..++++..|+.|..+++.++....++.+-+++|...+++
T Consensus 17 ~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e 55 (208)
T PRK14155 17 DAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMN 55 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888888888776554
No 389
>KOG0995|consensus
Probab=20.46 E-value=1.9e+02 Score=30.33 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+.+........+.++.+|.+|+.||+.++.+...
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~ 319 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDE 319 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666677777777777776665544
No 390
>KOG4815|consensus
Probab=20.39 E-value=4.6e+02 Score=26.17 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+...|..+|...|+.|-+.|.-+-+++++|+-++..+-
T Consensus 327 eaqarthqll~ankdlle~iq~lv~~lq~le~kis~ei 364 (511)
T KOG4815|consen 327 EAQARTHQLLLANKDLLEHIQLLVKQLQELELKISGEI 364 (511)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45566677888899999999999999999988886643
No 391
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.36 E-value=2.2e+02 Score=27.52 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+++...|+.+...+.+++++|.+.+..|..+|..
T Consensus 105 ~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~ 140 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKS 140 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445666667777777777777777777777777755
No 392
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.32 E-value=1.8e+02 Score=22.30 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhh
Q psy3590 128 ERENELQALLSRLG 141 (258)
Q Consensus 128 Eke~eIe~L~~qL~ 141 (258)
|.+++|+.|++++.
T Consensus 56 eq~~~i~~Le~~i~ 69 (83)
T PF07544_consen 56 EQEEEIEELEEQIR 69 (83)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 393
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=2.8e+02 Score=23.93 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+.++.+|...-..++..|+++..+++.+++++..
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666677777777777777777766654
No 394
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.32 E-value=1.7e+02 Score=24.28 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3590 115 AKMSNMRHRKILAERENEL 133 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eI 133 (258)
|...++.|+.++++++.++
T Consensus 71 l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 71 LQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 395
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=20.31 E-value=2.3e+02 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++.++....+.|.+.|.++|.+|-.++..--+
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666655444
No 396
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.30 E-value=2e+02 Score=27.81 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAER-----------------ENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Ek-----------------e~eIe~L~~qL~~~ 143 (258)
..++|+.+|+.|.++|+.++++. ..+++.|+++|.+-
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 56788999999999999999884 34788888888774
No 397
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.27 E-value=2.2e+02 Score=28.02 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+..+++.++..+...++++++++++++..|++++.+.
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566667777778888888888888888888888765
No 398
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.19 E-value=1.7e+02 Score=26.97 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
++.||+.||.++.++++++..|++++
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666655555555555555
Done!