Query psy3590
Match_columns 258
No_of_seqs 154 out of 347
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 20:31:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hjb_A Ccaat/enhancer binding 95.4 0.026 9E-07 43.5 5.7 46 107-152 40-85 (87)
2 1t6f_A Geminin; coiled-coil, c 95.1 0.039 1.3E-06 36.4 4.8 29 112-140 2-30 (37)
3 2yy0_A C-MYC-binding protein; 93.9 0.11 3.9E-06 36.5 5.3 33 110-142 19-51 (53)
4 3ra3_B P2F; coiled coil domain 93.6 0.052 1.8E-06 33.4 2.7 28 111-138 1-28 (28)
5 1ci6_A Transcription factor AT 91.9 0.35 1.2E-05 34.7 5.7 36 106-141 26-61 (63)
6 1gu4_A CAAT/enhancer binding p 91.7 0.26 8.8E-06 37.2 4.9 36 107-142 40-75 (78)
7 1t2k_D Cyclic-AMP-dependent tr 91.6 0.4 1.4E-05 33.9 5.7 36 106-141 25-60 (61)
8 3nmd_A CGMP dependent protein 91.0 0.41 1.4E-05 35.9 5.4 39 107-145 30-68 (72)
9 2wt7_A Proto-oncogene protein 89.0 0.92 3.1E-05 32.3 5.7 36 106-141 26-61 (63)
10 1jnm_A Proto-oncogene C-JUN; B 88.7 0.37 1.3E-05 34.2 3.5 36 106-141 25-60 (62)
11 1kd8_B GABH BLL, GCN4 acid bas 83.7 1.6 5.5E-05 28.6 4.2 35 110-144 1-35 (36)
12 2oa5_A Hypothetical protein BQ 83.0 1.1 3.6E-05 36.1 3.8 38 105-142 10-62 (110)
13 1wlq_A Geminin; coiled-coil; 2 81.0 2.4 8.1E-05 32.5 4.9 31 112-142 33-63 (83)
14 2aze_A Transcription factor DP 80.8 2 6.9E-05 36.3 4.9 33 109-141 4-36 (155)
15 4emc_A Monopolin complex subun 80.7 1.8 6.2E-05 37.7 4.7 36 107-142 17-52 (190)
16 2wq1_A General control protein 80.5 2.6 9E-05 27.1 4.2 31 112-142 2-32 (33)
17 2oqq_A Transcription factor HY 79.6 5.5 0.00019 26.9 5.8 36 106-141 6-41 (42)
18 3qh9_A Liprin-beta-2; coiled-c 79.3 3.6 0.00012 31.4 5.4 32 111-142 48-79 (81)
19 1nkp_B MAX protein, MYC proto- 78.7 3.2 0.00011 30.5 4.9 36 107-142 44-79 (83)
20 3mq7_A Bone marrow stromal ant 78.6 3.3 0.00011 33.7 5.3 33 109-141 70-102 (121)
21 3c3f_A Alpha/beta peptide with 76.5 4.1 0.00014 26.4 4.2 32 111-142 2-33 (34)
22 3s9g_A Protein hexim1; cyclin 76.2 5.1 0.00017 31.8 5.6 32 107-138 41-79 (104)
23 4dzn_A Coiled-coil peptide CC- 75.5 6.2 0.00021 24.9 4.8 28 111-138 3-30 (33)
24 3efg_A Protein SLYX homolog; x 74.7 6.1 0.00021 29.4 5.5 42 107-148 18-59 (78)
25 1uii_A Geminin; human, DNA rep 74.3 4 0.00014 31.3 4.4 31 112-142 41-71 (83)
26 2zxx_A Geminin; coiled-coil, c 74.2 4.7 0.00016 30.6 4.8 27 113-139 30-56 (79)
27 1go4_E MAD1 (mitotic arrest de 73.5 4.6 0.00016 31.8 4.8 33 111-143 13-45 (100)
28 1nlw_A MAD protein, MAX dimeri 72.7 5.5 0.00019 29.6 4.8 36 107-142 44-79 (80)
29 1kd8_A GABH AIV, GCN4 acid bas 72.5 4.1 0.00014 26.7 3.5 31 112-142 3-33 (36)
30 3m48_A General control protein 71.7 5.4 0.00018 25.7 3.9 29 107-142 4-32 (33)
31 3oja_A Leucine-rich immune mol 71.0 5.5 0.00019 37.1 5.5 38 107-144 439-476 (487)
32 1ic2_A Tropomyosin alpha chain 70.7 5.3 0.00018 29.5 4.3 40 107-146 31-70 (81)
33 3ra3_A P1C; coiled coil domain 70.2 2.5 8.5E-05 25.9 1.9 26 113-138 3-28 (28)
34 3hnw_A Uncharacterized protein 70.1 4.5 0.00015 33.1 4.2 36 107-142 65-100 (138)
35 2oxj_A Hybrid alpha/beta pepti 69.5 7.6 0.00026 25.1 4.2 28 107-141 5-32 (34)
36 2dgc_A Protein (GCN4); basic d 69.5 7.5 0.00026 27.7 4.8 34 109-142 29-62 (63)
37 3rvy_A ION transport protein; 69.3 3.1 0.00011 36.0 3.3 25 118-142 257-281 (285)
38 4etp_A Kinesin-like protein KA 68.7 7.3 0.00025 36.6 5.9 37 106-142 6-42 (403)
39 3u1c_A Tropomyosin alpha-1 cha 67.2 6.5 0.00022 30.3 4.3 40 107-146 34-73 (101)
40 1uo4_A General control protein 66.8 8.5 0.00029 24.9 4.0 30 113-142 4-33 (34)
41 2r2v_A GCN4 leucine zipper; co 66.3 10 0.00035 24.5 4.4 32 112-143 3-34 (34)
42 3err_A Fusion protein of micro 65.2 16 0.00056 35.7 7.7 40 107-146 170-209 (536)
43 2aze_B Transcription factor E2 65.0 7.9 0.00027 30.4 4.5 36 107-142 3-38 (106)
44 2wg5_A General control protein 64.9 5.1 0.00018 31.3 3.4 28 111-138 8-35 (109)
45 3cve_A Homer protein homolog 1 64.7 14 0.00049 27.4 5.6 32 107-138 4-35 (72)
46 3hnw_A Uncharacterized protein 64.4 12 0.00043 30.4 5.7 33 108-140 87-119 (138)
47 2bni_A General control protein 64.3 9.3 0.00032 24.8 3.9 29 107-142 5-33 (34)
48 2wuj_A Septum site-determining 63.5 5.4 0.00019 27.9 3.0 33 107-139 24-56 (57)
49 3nmd_A CGMP dependent protein 63.4 11 0.00039 28.0 4.8 31 112-142 21-51 (72)
50 2wvr_A Geminin; DNA replicatio 61.0 8.8 0.0003 33.8 4.4 30 112-141 110-139 (209)
51 1zxa_A CGMP-dependent protein 59.7 14 0.00047 27.1 4.6 30 116-145 24-53 (67)
52 3c3g_A Alpha/beta peptide with 59.4 16 0.00053 23.5 4.2 29 107-142 4-32 (33)
53 3trt_A Vimentin; cytoskeleton, 59.3 16 0.00054 26.2 5.0 29 109-137 48-76 (77)
54 1jnm_A Proto-oncogene C-JUN; B 58.2 22 0.00074 24.8 5.4 41 108-148 20-60 (62)
55 1ci6_A Transcription factor AT 58.1 20 0.00069 25.3 5.2 35 108-142 21-55 (63)
56 1dip_A Delta-sleep-inducing pe 57.9 13 0.00043 28.1 4.2 22 124-145 29-50 (78)
57 1dh3_A Transcription factor CR 57.2 6.7 0.00023 27.3 2.5 23 107-129 26-48 (55)
58 2ve7_A Kinetochore protein HEC 57.2 9.2 0.00031 34.8 4.1 29 111-139 186-214 (315)
59 2f95_B Sensory rhodopsin II tr 57.2 16 0.00053 27.7 4.9 34 109-142 111-144 (163)
60 3kin_B Kinesin heavy chain; mo 57.1 15 0.0005 29.0 4.8 31 107-137 86-116 (117)
61 2lw1_A ABC transporter ATP-bin 56.9 16 0.00053 27.3 4.7 28 115-142 20-47 (89)
62 3m91_A Proteasome-associated A 56.7 30 0.001 24.0 5.7 36 107-142 13-48 (51)
63 2oqq_A Transcription factor HY 56.7 13 0.00044 25.1 3.7 22 106-127 20-41 (42)
64 3m9b_A Proteasome-associated A 56.5 11 0.00037 34.1 4.4 36 107-142 58-93 (251)
65 1use_A VAsp, vasodilator-stimu 56.4 28 0.00097 23.8 5.4 32 112-143 9-42 (45)
66 1t2k_D Cyclic-AMP-dependent tr 55.9 14 0.00046 25.8 4.0 37 109-145 21-57 (61)
67 1wt6_A Myotonin-protein kinase 55.0 20 0.00068 27.3 5.0 29 108-136 43-71 (81)
68 2hy6_A General control protein 55.0 19 0.00064 23.3 4.1 29 114-142 5-33 (34)
69 3vmx_A Voltage-gated hydrogen 54.8 32 0.0011 23.8 5.6 34 109-142 3-43 (48)
70 1nkp_A C-MYC, MYC proto-oncoge 53.6 21 0.0007 26.8 4.9 36 107-142 49-84 (88)
71 3a7o_A Autophagy protein 16; c 52.9 18 0.00063 27.0 4.4 24 118-141 19-42 (75)
72 2wt7_A Proto-oncogene protein 52.7 28 0.00097 24.4 5.2 35 109-143 22-56 (63)
73 2pnv_A Small conductance calci 52.5 33 0.0011 23.1 5.2 33 110-142 9-41 (43)
74 2ocy_A RAB guanine nucleotide 52.4 25 0.00087 29.4 5.7 35 111-145 109-143 (154)
75 2xdj_A Uncharacterized protein 52.2 32 0.0011 25.9 5.7 36 107-142 24-59 (83)
76 3oja_B Anopheles plasmodium-re 51.3 14 0.00047 34.9 4.4 23 117-139 544-566 (597)
77 1ytz_T Troponin T; muscle, THI 51.0 38 0.0013 26.7 6.2 40 107-147 53-92 (107)
78 2q6q_A Spindle POLE BODY compo 51.0 7.2 0.00024 29.1 1.9 23 118-140 4-26 (74)
79 3he5_A Synzip1; heterodimeric 50.6 47 0.0016 22.5 5.7 34 107-140 7-47 (49)
80 3cvf_A Homer-3, homer protein 50.0 29 0.00098 26.2 5.1 32 107-138 10-41 (79)
81 1deb_A APC protein, adenomatou 49.9 30 0.001 24.4 4.8 35 107-141 7-41 (54)
82 2j5u_A MREC protein; bacterial 49.6 5.2 0.00018 35.4 1.1 31 112-142 28-61 (255)
83 1ykh_B RNA polymerase II holoe 49.6 27 0.00091 28.1 5.3 37 107-143 89-125 (132)
84 3u06_A Protein claret segregat 49.5 23 0.00079 33.4 5.6 34 107-140 7-40 (412)
85 2dgc_A Protein (GCN4); basic d 49.5 17 0.00058 25.9 3.6 27 107-133 34-60 (63)
86 3iyn_Q Protein IX, PIX, hexon- 49.4 30 0.001 28.5 5.5 39 107-145 95-133 (140)
87 1j1d_B Troponin T, TNT; THIN f 49.4 35 0.0012 26.9 5.8 39 107-146 53-91 (106)
88 1l8d_A DNA double-strand break 48.4 37 0.0013 25.5 5.7 35 107-141 68-102 (112)
89 2zqm_A Prefoldin beta subunit 48.2 37 0.0013 25.5 5.7 39 107-145 74-112 (117)
90 3a2a_A Voltage-gated hydrogen 48.2 28 0.00094 24.9 4.5 34 109-142 10-50 (58)
91 1go4_E MAD1 (mitotic arrest de 48.0 36 0.0012 26.7 5.6 31 106-136 15-45 (100)
92 1nkp_B MAX protein, MYC proto- 47.1 16 0.00054 26.7 3.3 30 107-136 51-80 (83)
93 2jee_A YIIU; FTSZ, septum, coi 46.8 41 0.0014 25.5 5.6 12 129-140 53-64 (81)
94 1fxk_A Prefoldin; archaeal pro 46.7 43 0.0015 24.7 5.8 36 107-142 69-104 (107)
95 3swy_A Cyclic nucleotide-gated 46.6 51 0.0017 22.4 5.5 37 107-143 2-38 (46)
96 2wuj_A Septum site-determining 46.4 26 0.0009 24.3 4.2 26 107-132 31-56 (57)
97 1wle_A Seryl-tRNA synthetase; 46.2 49 0.0017 32.1 7.5 36 111-146 117-152 (501)
98 2l5g_B Putative uncharacterize 45.5 37 0.0013 22.9 4.5 22 120-141 12-33 (42)
99 1gd2_E Transcription factor PA 45.5 32 0.0011 25.1 4.7 15 107-121 33-47 (70)
100 3s4r_A Vimentin; alpha-helix, 45.5 37 0.0013 25.8 5.2 33 110-142 23-67 (93)
101 2akf_A Coronin-1A; coiled coil 45.5 43 0.0015 21.1 4.6 26 115-140 4-29 (32)
102 3viq_B Mating-type switching p 45.4 24 0.00083 27.0 4.1 26 115-140 6-31 (85)
103 1zxa_A CGMP-dependent protein 45.4 27 0.00091 25.6 4.2 37 107-143 22-58 (67)
104 3he4_A Synzip6; heterodimeric 44.8 55 0.0019 22.7 5.5 35 107-141 21-55 (56)
105 2yy0_A C-MYC-binding protein; 44.8 15 0.00051 25.5 2.6 29 106-134 22-50 (53)
106 1yke_B RNA polymerase II holoe 44.8 39 0.0013 27.9 5.7 39 107-145 89-127 (151)
107 1zme_C Proline utilization tra 44.4 29 0.00098 23.7 4.1 22 121-142 48-69 (70)
108 3u59_A Tropomyosin beta chain; 43.7 28 0.00095 26.5 4.3 38 107-144 34-71 (101)
109 2wt7_B Transcription factor MA 43.5 24 0.00081 27.2 3.9 34 107-140 52-85 (90)
110 2wt7_B Transcription factor MA 43.2 52 0.0018 25.2 5.8 38 109-146 47-84 (90)
111 1ses_A Seryl-tRNA synthetase; 43.1 61 0.0021 30.5 7.4 37 110-146 64-100 (421)
112 1nlw_A MAD protein, MAX dimeri 43.1 29 0.00098 25.7 4.2 30 106-135 50-79 (80)
113 1gd2_E Transcription factor PA 42.6 36 0.0012 24.9 4.6 34 109-142 28-61 (70)
114 2f95_B Sensory rhodopsin II tr 41.8 11 0.00038 28.6 1.8 24 132-155 138-161 (163)
115 2zvf_A Alanyl-tRNA synthetase; 41.0 36 0.0012 27.3 4.8 31 107-137 29-59 (171)
116 1gmj_A ATPase inhibitor; coile 40.8 57 0.002 24.9 5.6 25 118-142 52-76 (84)
117 1fxk_C Protein (prefoldin); ar 40.6 55 0.0019 25.4 5.7 37 107-143 92-128 (133)
118 1a93_B MAX protein, coiled coi 40.3 45 0.0016 21.5 4.2 15 112-126 16-30 (34)
119 3efg_A Protein SLYX homolog; x 40.0 45 0.0015 24.6 4.8 36 107-142 11-46 (78)
120 1j1d_C Troponin I, TNI; THIN f 39.6 55 0.0019 26.8 5.7 40 107-146 69-108 (133)
121 3gp4_A Transcriptional regulat 39.6 24 0.00081 28.2 3.5 36 107-142 85-120 (142)
122 3m48_A General control protein 39.4 47 0.0016 21.3 4.1 14 113-126 17-30 (33)
123 2oxj_A Hybrid alpha/beta pepti 39.2 53 0.0018 21.2 4.3 13 114-126 19-31 (34)
124 3he4_B Synzip5; heterodimeric 39.0 22 0.00076 23.8 2.6 24 120-143 9-32 (46)
125 3viq_A SWI5-dependent recombin 38.6 38 0.0013 27.2 4.5 32 114-145 4-35 (122)
126 3mq9_A Bone marrow stromal ant 38.0 32 0.0011 31.7 4.6 27 116-142 435-461 (471)
127 2gkw_A TNF receptor-associated 38.0 42 0.0014 27.7 4.9 32 107-138 4-35 (192)
128 1a93_B MAX protein, coiled coi 37.1 59 0.002 21.0 4.3 23 112-134 9-31 (34)
129 4etp_A Kinesin-like protein KA 37.1 18 0.00061 34.0 2.7 37 107-143 21-57 (403)
130 4ghu_A TNF receptor-associated 36.7 37 0.0012 28.5 4.4 28 115-142 5-32 (198)
131 2jee_A YIIU; FTSZ, septum, coi 36.7 75 0.0026 24.0 5.6 22 107-128 10-31 (81)
132 2j5u_A MREC protein; bacterial 36.1 17 0.0006 32.0 2.3 31 111-141 20-50 (255)
133 1dh3_A Transcription factor CR 35.5 62 0.0021 22.3 4.7 32 110-141 22-53 (55)
134 3gpv_A Transcriptional regulat 35.2 40 0.0014 27.0 4.2 34 110-143 95-128 (148)
135 4ath_A MITF, microphthalmia-as 34.9 50 0.0017 25.1 4.4 26 107-132 53-78 (83)
136 2v66_B Nuclear distribution pr 34.7 78 0.0027 25.1 5.7 36 106-141 38-73 (111)
137 1lwu_C Fibrinogen gamma chain; 34.5 59 0.002 30.0 5.7 30 113-142 22-51 (323)
138 3mq7_A Bone marrow stromal ant 33.8 75 0.0026 25.7 5.5 29 114-142 61-89 (121)
139 1p9i_A Cortexillin I/GCN4 hybr 33.7 59 0.002 20.2 3.8 24 109-132 5-28 (31)
140 2p4v_A Transcription elongatio 33.4 53 0.0018 26.9 4.7 28 118-145 44-74 (158)
141 1lwu_C Fibrinogen gamma chain; 33.3 26 0.00088 32.4 3.1 36 107-142 23-58 (323)
142 1wt6_A Myotonin-protein kinase 33.1 51 0.0018 25.0 4.2 36 107-142 28-63 (81)
143 1ic2_A Tropomyosin alpha chain 32.8 88 0.003 22.7 5.4 33 109-141 19-51 (81)
144 3viq_B Mating-type switching p 32.8 33 0.0011 26.2 3.1 29 119-147 3-31 (85)
145 3na7_A HP0958; flagellar bioge 32.0 38 0.0013 29.4 3.8 42 107-148 43-84 (256)
146 3oja_B Anopheles plasmodium-re 31.7 66 0.0023 30.2 5.7 28 107-134 513-540 (597)
147 2e7s_A RAB guanine nucleotide 31.4 14 0.00047 30.5 0.8 33 113-145 99-131 (135)
148 2yko_A LINE-1 ORF1P; RNA-bindi 31.0 82 0.0028 28.0 5.8 37 106-142 9-45 (233)
149 1nkp_A C-MYC, MYC proto-oncoge 30.4 68 0.0023 23.9 4.5 32 106-137 55-86 (88)
150 2w6a_A ARF GTPase-activating p 30.1 1.2E+02 0.004 21.9 5.4 33 107-139 24-56 (63)
151 2v4h_A NF-kappa-B essential mo 29.5 96 0.0033 24.7 5.4 34 107-140 35-71 (110)
152 1am9_A Srebp-1A, protein (ster 29.4 77 0.0026 23.1 4.6 24 112-135 52-75 (82)
153 3swf_A CGMP-gated cation chann 29.0 1E+02 0.0035 23.0 5.1 16 108-123 19-34 (74)
154 2w6b_A RHO guanine nucleotide 29.0 1.5E+02 0.005 21.0 5.7 34 107-140 14-50 (56)
155 3rrk_A V-type ATPase 116 kDa s 28.9 86 0.0029 27.9 5.7 37 106-142 95-134 (357)
156 3u1c_A Tropomyosin alpha-1 cha 28.7 1E+02 0.0035 23.4 5.4 34 108-141 21-54 (101)
157 3u06_A Protein claret segregat 28.5 32 0.0011 32.5 2.9 36 107-142 21-56 (412)
158 3s4r_A Vimentin; alpha-helix, 28.3 1.1E+02 0.0038 23.0 5.5 33 108-140 61-93 (93)
159 1uuj_A Platelet-activating fac 28.0 23 0.0008 27.2 1.5 24 119-142 60-83 (88)
160 3gpv_A Transcriptional regulat 28.0 1.1E+02 0.0036 24.4 5.6 39 107-145 99-137 (148)
161 1l8d_A DNA double-strand break 27.9 1.2E+02 0.0042 22.5 5.7 37 107-143 7-43 (112)
162 1ca9_A TRAF2, protein (TNF rec 27.9 30 0.001 28.3 2.3 32 107-138 7-38 (192)
163 3he5_A Synzip1; heterodimeric 27.8 1.4E+02 0.0049 20.1 5.7 10 115-124 36-45 (49)
164 2zxx_A Geminin; coiled-coil, c 27.8 79 0.0027 23.8 4.4 20 109-128 47-66 (79)
165 2qm4_A Non-homologous END-join 27.8 61 0.0021 28.5 4.4 26 113-138 146-171 (235)
166 3qh9_A Liprin-beta-2; coiled-c 27.8 1.3E+02 0.0045 22.7 5.6 28 115-142 38-65 (81)
167 2zdi_C Prefoldin subunit alpha 27.7 1.3E+02 0.0044 23.9 6.1 40 107-146 102-141 (151)
168 1ik9_A DNA repair protein XRCC 27.7 90 0.0031 27.0 5.4 28 109-136 138-165 (213)
169 1fzc_C Fibrin; blood coagulati 27.6 75 0.0026 29.3 5.1 36 107-142 15-50 (319)
170 3vmx_A Voltage-gated hydrogen 27.4 71 0.0024 22.0 3.7 22 107-128 22-43 (48)
171 3pjs_K KCSA, voltage-gated pot 27.3 1.3E+02 0.0043 24.2 6.0 26 118-143 139-164 (166)
172 2wvr_A Geminin; DNA replicatio 27.2 1E+02 0.0035 27.1 5.7 19 110-128 129-147 (209)
173 2l5g_B Putative uncharacterize 26.4 1.5E+02 0.0051 19.9 5.4 33 107-139 6-38 (42)
174 3azd_A Short alpha-tropomyosin 26.2 25 0.00085 22.7 1.2 28 119-146 6-33 (37)
175 3w03_C DNA repair protein XRCC 25.9 82 0.0028 27.0 4.8 28 107-134 156-183 (184)
176 1fmh_A General control protein 25.8 1.3E+02 0.0044 18.9 4.4 26 107-132 5-30 (33)
177 1rtm_1 Mannose-binding protein 25.6 51 0.0018 25.2 3.2 21 118-138 5-25 (149)
178 1j1e_C Troponin I, TNI; THIN f 25.5 1.2E+02 0.0041 26.0 5.7 40 107-146 69-108 (180)
179 2ve7_A Kinetochore protein HEC 25.5 91 0.0031 28.2 5.3 25 118-142 186-210 (315)
180 1fxk_C Protein (prefoldin); ar 25.2 1.4E+02 0.0047 23.0 5.7 28 113-140 91-118 (133)
181 1kd8_A GABH AIV, GCN4 acid bas 25.2 1.5E+02 0.005 19.3 5.2 30 106-135 4-33 (36)
182 1fzc_C Fibrin; blood coagulati 25.1 31 0.001 31.9 2.0 41 107-147 8-48 (319)
183 3tnu_B Keratin, type II cytosk 24.9 62 0.0021 25.4 3.6 25 112-136 45-69 (129)
184 3qne_A Seryl-tRNA synthetase, 24.3 1.5E+02 0.0052 28.7 6.9 33 114-146 75-107 (485)
185 2ve7_C Kinetochore protein NUF 24.2 25 0.00084 31.1 1.2 39 107-145 152-190 (250)
186 3m9b_A Proteasome-associated A 24.1 54 0.0019 29.5 3.4 34 109-142 53-86 (251)
187 1lwu_B Fibrinogen beta chain; 24.0 75 0.0026 29.2 4.4 30 111-140 29-58 (323)
188 3q8t_A Beclin-1; autophagy, AT 23.5 1.3E+02 0.0045 22.7 5.1 24 113-136 28-51 (96)
189 4dzo_A Mitotic spindle assembl 23.5 73 0.0025 25.4 3.7 34 107-140 8-41 (123)
190 2gkw_A TNF receptor-associated 23.4 1.1E+02 0.0039 25.0 5.1 31 112-142 2-32 (192)
191 1yhn_B RILP, RAB interacting l 23.4 1.1E+02 0.0038 22.2 4.3 32 111-142 4-35 (65)
192 3eff_K Voltage-gated potassium 23.4 2.5E+02 0.0086 21.5 11.6 25 120-144 114-138 (139)
193 1dip_A Delta-sleep-inducing pe 23.3 67 0.0023 24.2 3.2 33 107-148 26-58 (78)
194 1z56_A Ligase interacting fact 22.9 53 0.0018 29.5 3.1 33 120-152 210-242 (246)
195 4h22_A Leucine-rich repeat fli 22.7 1.6E+02 0.0056 23.1 5.5 15 129-143 70-84 (103)
196 3lss_A Seryl-tRNA synthetase; 22.6 1.3E+02 0.0045 29.1 6.0 31 116-146 109-140 (484)
197 4b4t_K 26S protease regulatory 22.5 1.2E+02 0.0042 28.6 5.7 36 107-142 53-88 (428)
198 1lrz_A FEMA, factor essential 22.5 1.2E+02 0.004 27.9 5.5 11 201-211 346-356 (426)
199 4emc_A Monopolin complex subun 22.4 1.2E+02 0.0041 26.3 5.1 36 107-142 31-66 (190)
200 3arc_Z Photosystem II reaction 22.2 2.2E+02 0.0075 20.5 5.7 24 27-50 11-34 (62)
201 2oa5_A Hypothetical protein BQ 22.1 37 0.0013 27.2 1.7 16 173-188 39-54 (110)
202 1ytz_I Troponin I; muscle, THI 22.1 1.2E+02 0.0042 26.0 5.1 40 107-146 66-105 (182)
203 1pyi_A Protein (pyrimidine pat 22.1 1.9E+02 0.0064 20.7 5.5 17 126-142 50-66 (96)
204 1jcd_A Major outer membrane li 22.1 1.6E+02 0.0054 20.3 4.8 34 110-143 4-37 (52)
205 1grj_A GREA protein; transcrip 21.9 1.2E+02 0.0041 24.6 4.9 28 118-145 44-74 (158)
206 2zqm_A Prefoldin beta subunit 21.8 1E+02 0.0035 22.9 4.2 41 107-147 67-107 (117)
207 3u59_A Tropomyosin beta chain; 21.7 1.7E+02 0.0058 22.0 5.4 34 108-141 21-54 (101)
208 1g6u_A Domain swapped dimer; d 21.6 1.2E+02 0.0041 20.4 3.9 27 109-135 19-45 (48)
209 1q08_A Zn(II)-responsive regul 21.5 1.8E+02 0.0062 20.8 5.4 32 111-142 40-71 (99)
210 1t3j_A Mitofusin 1; coiled coi 21.5 1.3E+02 0.0044 23.4 4.7 19 120-138 50-68 (96)
211 3ghg_C Fibrinogen gamma chain; 21.4 1.2E+02 0.0042 28.9 5.4 31 116-146 104-134 (411)
212 3he5_B Synzip2; heterodimeric 21.3 2E+02 0.0069 19.6 5.7 35 107-141 7-48 (52)
213 1m1j_C Fibrinogen gamma chain; 21.0 1.2E+02 0.0041 28.8 5.3 28 118-145 106-133 (409)
214 1m1j_C Fibrinogen gamma chain; 20.6 1.1E+02 0.0039 29.0 5.0 29 111-139 106-134 (409)
215 2fxo_A Myosin heavy chain, car 20.5 1.9E+02 0.0067 22.6 5.7 28 114-141 94-121 (129)
216 1avy_A Fibritin, gpwac M; bact 20.5 2E+02 0.0069 21.4 5.3 33 106-138 11-43 (74)
217 2xv5_A Lamin-A/C; structural p 20.4 1.3E+02 0.0046 21.9 4.4 13 129-141 45-57 (74)
218 2er8_A Regulatory protein Leu3 20.4 78 0.0027 21.6 3.0 16 126-141 51-66 (72)
219 1fxk_A Prefoldin; archaeal pro 20.4 1.2E+02 0.004 22.3 4.2 40 107-146 62-101 (107)
220 4fm3_A Uncharacterized hypothe 20.3 2.1E+02 0.0071 22.2 5.7 37 107-143 61-97 (98)
221 3tnu_A Keratin, type I cytoske 20.1 64 0.0022 25.5 2.8 33 110-142 31-63 (131)
222 3brv_B NF-kappa-B essential mo 20.0 1.1E+02 0.0036 22.7 3.7 22 109-130 7-28 (70)
223 2akf_A Coronin-1A; coiled coil 20.0 1.7E+02 0.0059 18.3 4.9 27 107-133 3-29 (32)
No 1
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=95.41 E-value=0.026 Score=43.51 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALPSSGP 152 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~ 152 (258)
+.+.+...|+.||..|+.+|.++..|+..|+..|.+--..++.+.|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~~ 85 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcccc
Confidence 7778888999999999999999999999999999885555554433
No 2
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=95.05 E-value=0.039 Score=36.42 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+++..+||+.|.+.|.+|+++|.+|+++=
T Consensus 2 L~~~L~ENekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 2 LYEALKENEKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999753
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.86 E-value=0.11 Score=36.46 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.....|+.||.+||+++.++.+++++|+.+|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345569999999999999999999999999874
No 4
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=93.59 E-value=0.052 Score=33.37 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
++.+|++.|.+||++|+.+|-||..|++
T Consensus 1 kirrlkqknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 1 KIRRLKQKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ChhHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 3567999999999999999999988753
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=91.92 E-value=0.35 Score=34.68 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
...+.+..+|+.+|..|+.+|..+..|+..|++.|.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378888899999999999999999999999988764
No 6
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=91.66 E-value=0.26 Score=37.21 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+++...|+.||..|+.+|.++..|+..|+..|.+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999999999999999999987653
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=91.62 E-value=0.4 Score=33.86 Aligned_cols=36 Identities=25% Similarity=0.163 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
...+++...|+.+|..|+.+|..+..++..|++.|.
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 377888899999999999999999999999998773
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.04 E-value=0.41 Score=35.88 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.-.|++...+...+++.++|.|||++|..|+.+|..-+.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556667778899999999999999999999976543
No 9
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=88.96 E-value=0.92 Score=32.31 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.+.+++...|+.+|..|+.+|..+..++..|+..|.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999999999999999988764
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=88.74 E-value=0.37 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.+.+++...|+.+|..|+.+|..+..++..|++.|.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888999999999999888888888877664
No 11
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=83.74 E-value=1.6 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+|+.+|+...++|..+-.+++.++++|+..+++-+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 35667888888888888888999999998887643
No 12
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=82.97 E-value=1.1 Score=36.10 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhh
Q psy3590 105 SSELEEKLKDAKMSNMRHRKILA---------------ERENELQALLSRLGS 142 (258)
Q Consensus 105 s~~~eEri~~L~~EN~~Lkk~I~---------------Eke~eIe~L~~qL~~ 142 (258)
+.+...++.+|+-||..||++|. +||+.|...-.+|.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss 62 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGA 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999998 488888887777755
No 13
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=81.01 E-value=2.4 Score=32.55 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+...||+.|.++|.+|+++|..|++....
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999977654
No 14
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=80.80 E-value=2 Score=36.28 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.+++.+|+.|+...+.+|++|.+++++|..|..
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999998763
No 15
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=80.68 E-value=1.8 Score=37.71 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+..+.+|..||..|..++..++.||+.|++||.+
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~s 52 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDS 52 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778999999999999999999998888754
No 16
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.49 E-value=2.6 Score=27.15 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+|+...+++-.+..+++.|+.+|++-|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 4556666667777778888888888888765
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=79.62 E-value=5.5 Score=26.93 Aligned_cols=36 Identities=36% Similarity=0.351 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
++.|++-.+|+..|.+|..+|.-+.+|-..|++-|.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 367888888888888888888888888888887664
No 18
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=79.31 E-value=3.6 Score=31.39 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++..-+.|...|++++..+|++|+.|+.+|..
T Consensus 48 KLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 48 KLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 33334467778888888888888888888764
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.68 E-value=3.2 Score=30.53 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..-+=|..|+.+++.|+.++.++..+++.|+++|..
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557889999999999999999999999999865
No 20
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.58 E-value=3.3 Score=33.68 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..++.+|++|+..|.+.|.+..+++++|++.-.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 556888999999999999999999999987764
No 21
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=76.46 E-value=4.1 Score=26.38 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
|+.+|+...++|-.+-.+++.|+.+|+.-|++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 34445555555555556666777777776654
No 22
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=76.22 E-value=5.1 Score=31.78 Aligned_cols=32 Identities=38% Similarity=0.341 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRK-------ILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk-------~I~Eke~eIe~L~~ 138 (258)
..|.++.+++.||+++|+ +|.+++.+|+.|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 678888899999999998 67777777777763
No 23
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=75.53 E-value=6.2 Score=24.93 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
++..|++|...||++|+.+.-||..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556778888888888888888877765
No 24
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=74.69 E-value=6.1 Score=29.44 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
+.|+++...+...++|-..+++...+|+.|++++.--.+++-
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666667777777777778888888888877555543
No 25
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=74.27 E-value=4 Score=31.26 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+...||+.|.++|.+|+.+|..|++.+..
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999877655
No 26
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=74.16 E-value=4.7 Score=30.57 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
.+...||+.|.++|.+|+++|..|++.
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557889999999999999999999875
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.51 E-value=4.6 Score=31.79 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
++..|..+.++|+++-..+..+++.|+.+|..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444455555443
No 28
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=72.69 E-value=5.5 Score=29.61 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+=|..|+.++..+..++.++..+++.|+++|..
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667889999999999999999999999888863
No 29
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=72.51 E-value=4.1 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+|+.+.++|-.+-.+++.++.+|+.-+++
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3455555566666666667777777776654
No 30
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=71.73 E-value=5.4 Score=25.72 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..|++...|..+|. +++.|++.|+.-|++
T Consensus 4 QLE~kVEeLl~~n~-------~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 4 QLEAKVEELLSKNW-------NLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhH-------HHHHHHHHHHHHhhc
Confidence 44555555555554 555666666666543
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.97 E-value=5.5 Score=37.09 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
...+++.++++||++++++|.|.+.+|++..+.+.++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 34455677888999999999999999998888887643
No 32
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.71 E-value=5.3 Score=29.48 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..+.+...++.|...|++.|..++.+++..+++|..+..+
T Consensus 31 ~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 31 AAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888899999999999999888888775544
No 33
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=70.18 E-value=2.5 Score=25.90 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
..|+-||..|.+.|+.+...|.+|++
T Consensus 3 dalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHhccHHHHHHHHHHHHHHHHhcC
Confidence 34788899999999988888888763
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.06 E-value=4.5 Score=33.07 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+++.+++.++..|++++.+++.+|.+|+..|.+
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777777766666666666654
No 35
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=69.54 E-value=7.6 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..|++...|..+|.+| +.+++.|+.-|+
T Consensus 5 QLE~kVEeLl~~n~~L-------e~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHL-------EXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhH-------HHHHHHHHHHHh
Confidence 4555555555555555 455555665554
No 36
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=69.47 E-value=7.5 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+++..|+.+...|+.+-.++.++|+.|+++|++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666666666666666777777777654
No 37
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=69.27 E-value=3.1 Score=36.04 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 118 SNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
|.+++.+++.++++++++|++++.+
T Consensus 257 ~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 257 HEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp -------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555556555543
No 38
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=68.68 E-value=7.3 Score=36.65 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...++++..|+.+.++++++|++.+++++++++++.+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888888888877654
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.20 E-value=6.5 Score=30.31 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..+++..+++.|..+|++.|...+.+++.++.+|..++.+
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888888988888888888888776554
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=66.84 E-value=8.5 Score=24.94 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+|+...++|-.+-.+++.|+.+|+.-|++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 334444444555555666677777776654
No 41
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=66.26 E-value=10 Score=24.54 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+.+|+...+++-.+..+++.|+.+|++-|+++
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg~r 34 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 45566666666677777788888888877653
No 42
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=65.24 E-value=16 Score=35.73 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
........+..|-+.++.+|+++++++..++++|.+....
T Consensus 170 ~A~~~Y~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ 209 (536)
T 3err_A 170 IAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQ 209 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345677799999999999999999999999999987664
No 43
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=65.00 E-value=7.9 Score=30.35 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+..+++..|+.|.+.|.++-+++|..|..++++|.+
T Consensus 3 ~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~ 38 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 38 (106)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888866
No 44
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=64.89 E-value=5.1 Score=31.26 Aligned_cols=28 Identities=21% Similarity=0.071 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
++.+|+.+.+.+++++.++.++|+.|++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5567899999999999999999999985
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.72 E-value=14 Score=27.36 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+..++++.++.+|..|+.++..++.+++.-+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 55778888888888888888888877776653
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.43 E-value=12 Score=30.42 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
.++++++|+.|+.+.+.++.+...++++|++++
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 47
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=64.31 E-value=9.3 Score=24.75 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..|++...|..+|.. ++.|+.+|+.-|++
T Consensus 5 QLEdKvEeLl~~~~~-------L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 5 QIEDKLEEILSKGHH-------ICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHccHH-------HHHHHHHHHHHhcc
Confidence 455555555555554 45556666665543
No 48
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=63.50 E-value=5.4 Score=27.86 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
+..+=+.++..+-+.|.+++.++.++++.|+++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444445544445555555555555544443
No 49
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.44 E-value=11 Score=28.00 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+|+..-+.-.++|.+||+.|++|+.+|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555544
No 50
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=61.00 E-value=8.8 Score=33.82 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
++....||+.|.++|.+|+.+|..|++...
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~ 139 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENK 139 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999888875553
No 51
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=59.70 E-value=14 Score=27.14 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..--.+|+..+.+++++|+.|+++|..=..
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777888888888888876444
No 52
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=59.37 E-value=16 Score=23.55 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..|++...|..+|.. ++.|+..|+.-|++
T Consensus 4 QLEdKvEeLl~~~~~-------Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYH-------XENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhH-------HHHHHHHHHHHHcc
Confidence 455555555555554 45556666665543
No 53
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=59.34 E-value=16 Score=26.20 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
.+.+...+.|..+|++.|..++.+|+.|+
T Consensus 48 ~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 48 NDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455566777777777777777777664
No 54
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.16 E-value=22 Score=24.84 Aligned_cols=41 Identities=7% Similarity=-0.029 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
-.+.+..|+.+...|..+-.++..+|..|++++..-+..|+
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999887665544
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.08 E-value=20 Score=25.33 Aligned_cols=35 Identities=6% Similarity=-0.069 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
-.++...|+.+.++|+.+-.++..+|+.|++.+..
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667779999999999999999999999988754
No 56
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=57.87 E-value=13 Score=28.12 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q psy3590 124 KILAERENELQALLSRLGSESL 145 (258)
Q Consensus 124 k~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.++.+++.|-.-|+.....+..
T Consensus 29 e~~~qLE~EN~~Lk~~aspEql 50 (78)
T 1dip_A 29 EKNSQLERENTLLKTLASPEQL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCS
T ss_pred HHHHHHHHHHHHHHHhCCHHHH
Confidence 3444444555555555544433
No 57
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=57.24 E-value=6.7 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAER 129 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Ek 129 (258)
+.|.+...|+.||..|+.++..+
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666555543
No 58
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=57.16 E-value=9.2 Score=34.85 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
++..|+.+|+.|+++|++++++++.++.-
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 56667777777777777777777666653
No 59
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=57.16 E-value=16 Score=27.74 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+++.+|...-+.|...|.+...++++-++++.+
T Consensus 111 ~dEi~~L~~~~n~m~~~l~~~~~~~~~~~~~~~~ 144 (163)
T 2f95_B 111 EDEIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQ 144 (163)
T ss_dssp ----------------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665555555544
No 60
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=57.05 E-value=15 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
+..+++.+...+++.|+.+|++++.|++..+
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777788888889999999888887764
No 61
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=56.86 E-value=16 Score=27.25 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+.|-..+-.+|.+++++|..|+.+++.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556667777788888888888877754
No 62
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=56.69 E-value=30 Score=23.99 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+...+...|-..|.+|-..+.+--.+|..|+++|+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888888888888888864
No 63
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=56.66 E-value=13 Score=25.15 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILA 127 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~ 127 (258)
++.|+++.-|+.||..||+.+.
T Consensus 20 aeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 20 SELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhc
Confidence 3778888888888888887653
No 64
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.53 E-value=11 Score=34.07 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+.++..|...|+.|+..+++...||+.|++++..
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778888888999999999999999999865
No 65
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=56.43 E-value=28 Score=23.75 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=22.9
Q ss_pred HHHHHHH-HHHHHHHHHH-HHHHHHHHHHHhhhc
Q psy3590 112 LKDAKMS-NMRHRKILAE-RENELQALLSRLGSE 143 (258)
Q Consensus 112 i~~L~~E-N~~Lkk~I~E-ke~eIe~L~~qL~~~ 143 (258)
+..+++| .+++|++|++ |++-|+.++..|+.+
T Consensus 9 le~~KqEIL~E~RkElqK~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 9 LQRVKQELLEEVKKELQKVKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445544 3678888888 888888888887654
No 66
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.95 E-value=14 Score=25.78 Aligned_cols=37 Identities=5% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
.+.+..|+.+...|..+-.++.++|+.|++++..=+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999998876443
No 67
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.03 E-value=20 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
.+.++++.+..|++|..++..+++++++|
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555443
No 68
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=54.96 E-value=19 Score=23.31 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+|+...++|-..=.+++.++.+|++-|++
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34444444444445566667777776654
No 69
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=54.83 E-value=32 Score=23.77 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILA-------ERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~-------Eke~eIe~L~~qL~~ 142 (258)
+.++.+|+.-|..|=..++ +++-||++|+.-|.+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4455555555555444444 466677777666543
No 70
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.55 E-value=21 Score=26.82 Aligned_cols=36 Identities=6% Similarity=-0.031 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..-+=|..|+.++..+..++.++..+.+.|+++|.+
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888888888888888765
No 71
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=52.90 E-value=18 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 118 SNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.-..||+++.+||.||.+|++.+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888889999988887663
No 72
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.66 E-value=28 Score=24.41 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
.+.+..|+.+...|..+-.++.++|+.|++++..-
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999887653
No 73
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=52.46 E-value=33 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+-..++..-.+.+.++|..+|.+++.|++.+..
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334456677778888999999999999988753
No 74
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.36 E-value=25 Score=29.44 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+...++..|..|++++.+++..|+.++.+|..-|.
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33558889999999999999999999999988554
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.23 E-value=32 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+...++..|+.|..+||=++.+...+|+.|+++-.+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888888888888888876655
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.31 E-value=14 Score=34.92 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 117 MSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 117 ~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
.|++++++++.+..+++++++++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHH
Confidence 33333333333333333333333
No 77
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=51.01 E-value=38 Score=26.68 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLAL 147 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl 147 (258)
+.-++|..|+.|.=+|...+...+-+|.+|..++++- .|.
T Consensus 53 eLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl-gKf 92 (107)
T 1ytz_T 53 ELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA-QKH 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh-cCc
Confidence 6667788899999999999999999999999999987 543
No 78
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=50.98 E-value=7.2 Score=29.10 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 118 SNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+|.+|...+.+|..||++|.--+
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlv 26 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIA 26 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544333
No 79
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=50.60 E-value=47 Score=22.51 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKIL-------AERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I-------~Eke~eIe~L~~qL 140 (258)
..|.+...|+.||+.+++.- +-++++|.-|+.++
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 55677778888888887754 44555666555554
No 80
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.96 E-value=29 Score=26.15 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+..++++.++.+|..|+.++..++.+++.-+.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44667777888888888887777777766553
No 81
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=49.87 E-value=30 Score=24.35 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..-.+...|+.||.-||+++.....+|..|+..-.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets 41 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhh
Confidence 34456677999999999999988887777765443
No 82
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=49.63 E-value=5.2 Score=35.37 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAE---RENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~E---ke~eIe~L~~qL~~ 142 (258)
..+|+.||.+|+.++.+ +++|.++|++.|+-
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455555555544433 34455556655544
No 83
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.61 E-value=27 Score=28.13 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+-.+++..|+.||+...+++.++-++-+.+-+++.+.
T Consensus 89 ~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999999988888877777777776666654
No 84
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.50 E-value=23 Score=33.44 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..++++..|+++++++++++++..+++++++++|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666655
No 85
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=49.48 E-value=17 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
+.+.+...|+.||..|+.++..+..++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888766554
No 86
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=49.44 E-value=30 Score=28.52 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..|+++..+..+.+.|-++|.++..+++.|.+|....|.
T Consensus 95 ~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~~~ 133 (140)
T 3iyn_Q 95 ARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSALKA 133 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677888889999999999999999999999998877754
No 87
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=49.43 E-value=35 Score=26.89 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.-++|..|+.|.=+|...+...+-+|.+|..+++.- .|
T Consensus 53 eLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl-gK 91 (106)
T 1j1d_B 53 ELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN-QK 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh-cC
Confidence 5667788899999999999999999999999999886 44
No 88
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.38 E-value=37 Score=25.54 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..+.++..+..+-..++.++.+++.+++.|++++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777788888888888877776
No 89
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.22 E-value=37 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..+++...++.+...+.+++..+++++++++.+|...-.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667777788888888888888888888888888876543
No 90
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=48.19 E-value=28 Score=24.90 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNM-------RHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~-------~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
|+++.+|++-|. .|+.+=.|+|-||++|..-|.+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554 4555556678888888877754
No 91
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.96 E-value=36 Score=26.68 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
....+++..|+.||.+|++++.+++.+|+..
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999763
No 92
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.13 E-value=16 Score=26.70 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
..+++...|+.|.+.|+++..+++.+|..|
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666677777777777777777777654
No 93
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.84 E-value=41 Score=25.46 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q psy3590 129 RENELQALLSRL 140 (258)
Q Consensus 129 ke~eIe~L~~qL 140 (258)
++.+++.|++..
T Consensus 53 L~~en~qLk~E~ 64 (81)
T 2jee_A 53 LERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 94
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.71 E-value=43 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..+++...+..+...+.+++..++.++++++.+|..
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777777777776654
No 95
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.64 E-value=51 Score=22.44 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+.||+..+|+..-+.|+-..+.+=+|-++-+++|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888777777777777777766654
No 96
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.39 E-value=26 Score=24.28 Aligned_cols=26 Identities=4% Similarity=0.040 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENE 132 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~e 132 (258)
...+.+..|..||.+|++++.+++++
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555566666666666666665544
No 97
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.18 E-value=49 Score=32.12 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+...|..|-+.++.+|+++++++.++++++.+....
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777888888888888888888888776554
No 98
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.54 E-value=37 Score=22.89 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy3590 120 MRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.+.-++|++-+++|.+|+.++.
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554443
No 99
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.52 E-value=32 Score=25.14 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMR 121 (258)
Q Consensus 107 ~~eEri~~L~~EN~~ 121 (258)
+.|+++.+|+.+|..
T Consensus 33 ~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 33 ALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 100
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.52 E-value=37 Score=25.78 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhh
Q psy3590 110 EKLKDAKMSNMRHRKILAER------------ENELQALLSRLGS 142 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Ek------------e~eIe~L~~qL~~ 142 (258)
++-..|+++|..|..+|.+. +++|+.|+++|..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~ 67 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQ 67 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHH
Confidence 34444555555555555442 4556666655543
No 101
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=45.50 E-value=43 Score=21.09 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
|++|.+.|+...+++.+.++.|++.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 102
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=45.41 E-value=24 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
|+.+...|+.++.+++++|.+++.++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555554444
No 103
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.40 E-value=27 Score=25.59 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
.-++++..|+.+++.-..+|+++..+|..++.-+...
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~ 58 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVP 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6688899999999999999999999999998877643
No 104
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.84 E-value=55 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..|.-..+|+.+|..|.+.|+.+++.|.-|++.+.
T Consensus 21 klenivarlendnanlekdianlekdianlerdva 55 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANLERDVA 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhc
Confidence 44555578999999999999999999999988653
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.83 E-value=15 Score=25.50 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQ 134 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe 134 (258)
.....+..+|+.+++.|++++.|+.++++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666777777777777777777664
No 106
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=44.76 E-value=39 Score=27.90 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+-.+++..|+.||+...+++.++-++-+.+.+++.+.-.
T Consensus 89 eQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778889999988877777766666666666655443
No 107
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=44.41 E-value=29 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy3590 121 RHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 121 ~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.|+.+|.+++.+|+.|+..|.+
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555566666655543
No 108
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=43.75 E-value=28 Score=26.49 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
..+++..+++.|...+++.|...+.+++..+.++....
T Consensus 34 ~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677777777777777777777666665543
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.50 E-value=24 Score=27.19 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..|.+...|..|.+.|++++.+...+++.+++++
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555554444
No 110
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.23 E-value=52 Score=25.24 Aligned_cols=38 Identities=5% Similarity=0.039 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
-++...|+.|+..|+.++..+-.|+..+.+.++.-+.+
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999888765443
No 111
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=43.15 E-value=61 Score=30.49 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
++...|..|-+.++.+|+++++++..+++++.+...+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445688888899999999999999999999876664
No 112
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=43.11 E-value=29 Score=25.66 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQA 135 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~ 135 (258)
...+++..+++.|++.|+++..++..+++.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366667777888888888888888777764
No 113
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.65 E-value=36 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++.+.+|+.+...|+.....++++.+.|+.++..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777766654
No 114
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=41.77 E-value=11 Score=28.58 Aligned_cols=24 Identities=8% Similarity=-0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCC
Q psy3590 132 ELQALLSRLGSESLALPSSGPHGK 155 (258)
Q Consensus 132 eIe~L~~qL~~~~~kl~~~~~~~~ 155 (258)
..+++++.-.++...-..++.+++
T Consensus 138 ~~~~~~~~~~ea~~~~~~~~~~~~ 161 (163)
T 2f95_B 138 AREDAEQAQKRAEEINTNSHHHHH 161 (163)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHhcccCCCcccc
Confidence 333333333333333333333333
No 115
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=41.02 E-value=36 Score=27.27 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
+..+++.+|..|++++++++.++..++...+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999988888888777766553
No 116
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=40.83 E-value=57 Score=24.87 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 118 SNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
|...-+++|.+++++|+..+.++.+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555543
No 117
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.56 E-value=55 Score=25.39 Aligned_cols=37 Identities=5% Similarity=0.031 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
..++|+..|+..-+.+++.+.++.++|+.+++.+.+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888888888888888877664
No 118
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.30 E-value=45 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKIL 126 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I 126 (258)
|.+|+.+|..|+.+|
T Consensus 16 IddlkrQN~~Le~Qi 30 (34)
T 1a93_B 16 IDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 119
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.96 E-value=45 Score=24.64 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++|+.+|+....-....|.++|..+..-++++..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~ 46 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGAR 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555444
No 120
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.60 E-value=55 Score=26.76 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.-++|..|++|.=++...+...+-+|.+|..+++.-..+
T Consensus 69 eLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gK 108 (133)
T 1j1d_C 69 QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcc
Confidence 5557788899999999999999999999999999986554
No 121
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.56 E-value=24 Score=28.24 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..++.+.++|++.+..++..|+.+++.+..
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666655543
No 122
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=39.38 E-value=47 Score=21.33 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q psy3590 113 KDAKMSNMRHRKIL 126 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I 126 (258)
.+|+.|..+||..+
T Consensus 17 ~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 17 WNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34566666655544
No 123
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.20 E-value=53 Score=21.18 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy3590 114 DAKMSNMRHRKIL 126 (258)
Q Consensus 114 ~L~~EN~~Lkk~I 126 (258)
+|+.|.++||..+
T Consensus 19 ~Le~eV~rLk~ll 31 (34)
T 2oxj_A 19 HLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3555555555443
No 124
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.98 E-value=22 Score=23.85 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 120 MRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
..+.+++.|.++++.-|++.|.=+
T Consensus 9 knyiqeleernaelknlkehlkfa 32 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFA 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHH
Confidence 344555666666666666666443
No 125
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=38.60 E-value=38 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+|..+..+|.++|++++++|+.|++-+.-+..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~ 35 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEAK 35 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788888889999999888888877655444
No 126
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.03 E-value=32 Score=31.68 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+...-+++|+|+|.||..|..+|.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333345566666666666666654
No 127
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=38.01 E-value=42 Score=27.69 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
..|.++..+.......+.+|++++.+++++++
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555555555555555555555554
No 128
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=37.14 E-value=59 Score=20.97 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAERENELQ 134 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe 134 (258)
....+.+.+++|++-+.++.+|.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 33344445555555555444443
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.09 E-value=18 Score=33.98 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+.++++.+++.+++++++++.+.+.+-..|-.++.+-
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666677777777777777776666555565555553
No 130
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=36.68 E-value=37 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
|+...+.+.++|..++.+|++|++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 32 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQV 32 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777777744
No 131
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.68 E-value=75 Score=24.01 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E 128 (258)
..|+|++.+......|+.+|.|
T Consensus 10 qLE~KIq~avdtI~lLqmEieE 31 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEE 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333
No 132
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=36.07 E-value=17 Score=31.95 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.+..++.||++||+++.+++.++..+++.-.
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~ 50 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESEVADLKK 50 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999998888777766543
No 133
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.51 E-value=62 Score=22.26 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+.+.+|+.+...|..+-.++..+++.|++.+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777777776666667766666554
No 134
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.17 E-value=40 Score=26.99 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+...-|+...+.++++|+++++.++.|+..+..-
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555556666666666666665555543
No 135
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=34.94 E-value=50 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENE 132 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~e 132 (258)
+++.+...|+..|+.|-.+|+|+|.+
T Consensus 53 e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 53 DLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44555555666666666666555443
No 136
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.69 E-value=78 Score=25.13 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+..+.++..|..+|+.|++.|.+++-.-+.|.++-.
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 367778888888888888888888887777776543
No 137
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.54 E-value=59 Score=30.01 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.....+.+.|+.+|.+++++|+.|+++|.+
T Consensus 22 ~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 22 VSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555556666666655544
No 138
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.76 E-value=75 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.|+.|...-+++++|++.||..|.++|.+
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554466677777777777777765
No 139
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=33.74 E-value=59 Score=20.20 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENE 132 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~e 132 (258)
..-+..|+.||..+|..+.|+-+.
T Consensus 5 nallasleaenkqlkakveellak 28 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566888998888777765444
No 140
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=33.35 E-value=53 Score=26.87 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=21.8
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhhccc
Q psy3590 118 SNMRH---RKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 118 EN~~L---kk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
||.+| |++..+.+.+|..|+.+|.+++-
T Consensus 44 ENaeY~aak~~q~~~e~rI~~L~~~L~~A~v 74 (158)
T 2p4v_A 44 ENADYQYNKKRLREIDRRVRYLTKCMENLKI 74 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 55544 67778899999999999988664
No 141
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.30 E-value=26 Score=32.43 Aligned_cols=36 Identities=3% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..|+...+.++.+|.+++.+|..|++++..
T Consensus 23 ~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 23 SHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888899999999999999999999999988754
No 142
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.13 E-value=51 Score=25.01 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...|++.+.+..|..+.+++.+-+++.++|...+..
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999998888888876666666655544
No 143
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.83 E-value=88 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
.++...++.+.+...+...+.+.+|..|++++.
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq 51 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLK 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444445555555555555555666666655553
No 144
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.79 E-value=33 Score=26.18 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3590 119 NMRHRKILAERENELQALLSRLGSESLAL 147 (258)
Q Consensus 119 N~~Lkk~I~Eke~eIe~L~~qL~~~~~kl 147 (258)
..+++.+|+++++++..|..++.+...+|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888888888888876653
No 145
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.97 E-value=38 Score=29.42 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
..+.++..++.+-..+++++.+++.+|+.++.++...+.++.
T Consensus 43 ~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 43 AKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777778888888888888888888888888777653
No 146
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.71 E-value=66 Score=30.23 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQ 134 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe 134 (258)
..+++...++.+++++++++.++.++.+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 3444445555666666666644444444
No 147
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.37 E-value=14 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..++..|..|++++.+++..|+.++.||.+-|.
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999877543
No 148
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.00 E-value=82 Score=28.03 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.+.||++..|+...+++.+..++++.+|..+++.|.+
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~d 45 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQE 45 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888888888777755
No 149
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.42 E-value=68 Score=23.91 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALL 137 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~ 137 (258)
...+++...+..+.+.++++-.++..+|+.|+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666666677777777777777777777664
No 150
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.07 E-value=1.2e+02 Score=21.94 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
.+|.++++|-.=|+.+..+|.-...+|..|+..
T Consensus 24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 568888888888888888888888888877653
No 151
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.53 E-value=96 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAEREN---ELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~---eIe~L~~qL 140 (258)
..|+.+..-+.+-.+||++|+++++ +|..|+.|+
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv 71 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQA 71 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666 555555554
No 152
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=29.40 E-value=77 Score=23.14 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAERENELQA 135 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~ 135 (258)
|..|+.++..|+.+..++..+|++
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555544444444444443
No 153
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=28.99 E-value=1e+02 Score=22.98 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3590 108 LEEKLKDAKMSNMRHR 123 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lk 123 (258)
.+.++.+|..|..+.+
T Consensus 19 LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 19 LQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 154
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.96 E-value=1.5e+02 Score=21.04 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERE---NELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke---~eIe~L~~qL 140 (258)
...++...|+.||..|++-+.|-. .++|.+-+++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999887732 3444444444
No 155
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.93 E-value=86 Score=27.89 Aligned_cols=37 Identities=22% Similarity=0.065 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSR---LGS 142 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q---L~~ 142 (258)
.+.++.+.++..+-+++.+++.+++++++.|+++ +..
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~ 134 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEK 134 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3566778888888999999999999999999888 665
No 156
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.73 E-value=1e+02 Score=23.41 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..++...++.+.........+++.+|.+|++++.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555666666666666667777777766664
No 157
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.48 E-value=32 Score=32.48 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.++++.+++.|++++++++.+.+.+-..|-.++.+
T Consensus 21 ~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 21 ELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666665555555444555555544
No 158
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.30 E-value=1.1e+02 Score=23.04 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
...++..+..||..+.-+|..+.+++++++.+|
T Consensus 61 Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 61 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334445555555555555555555555555543
No 159
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=28.01 E-value=23 Score=27.15 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 119 NMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 119 N~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
.-+|||.|.++|+++..|++.+.+
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999998888887765
No 160
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.99 E-value=1.1e+02 Score=24.43 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
..++++..++.+.++|++.+..++..|+.+++.+.....
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 137 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANA 137 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456666667777777777777777777777666555433
No 161
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.91 E-value=1.2e+02 Score=22.53 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
..++++..+..+-..++..+.+.+.+|+.++..+..-
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777778888888888888888777664
No 162
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=27.86 E-value=30 Score=28.34 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
..+.+..+|+.-....+.+|++++.+++++++
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (192)
T 1ca9_A 7 ALSSKVQQLERSIGLKDLAMADLEQKVLEMEA 38 (192)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555555665556666666666666666655
No 163
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.85 E-value=1.4e+02 Score=20.12 Aligned_cols=10 Identities=20% Similarity=0.056 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy3590 115 AKMSNMRHRK 124 (258)
Q Consensus 115 L~~EN~~Lkk 124 (258)
|+.|...+|+
T Consensus 36 lekeianlrk 45 (49)
T 3he5_A 36 LEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 164
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.84 E-value=79 Score=23.80 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~E 128 (258)
++++..|+.||+.|+....+
T Consensus 47 ~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 47 DSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444
No 165
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=27.77 E-value=61 Score=28.55 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
..++.+++.|...|.+||++|+.++.
T Consensus 146 ~~l~~q~~~L~~lL~~KD~eI~~y~~ 171 (235)
T 2qm4_A 146 LALQCQVRELATLLHMKDLEIQDYQE 171 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999999654
No 166
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.75 E-value=1.3e+02 Score=22.73 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 115 AKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 115 L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++.|...+.+.|..--++|..|+++|..
T Consensus 38 lEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 38 LENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3334444444444444677788887765
No 167
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.75 E-value=1.3e+02 Score=23.93 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..++|+..+...-+.+.+.+.++.++++.++..+.+...+
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888888888887775554
No 168
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.72 E-value=90 Score=26.99 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
+++..+|..||+++++.+.++.++++++
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444444433
No 169
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.55 E-value=75 Score=29.25 Aligned_cols=36 Identities=3% Similarity=0.050 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..|+...++++.+|.+++.+|..|+.++..
T Consensus 15 ~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 15 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446777777777777777777777777777666554
No 170
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=27.40 E-value=71 Score=22.04 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~E 128 (258)
+.++...++++|+++|++.|.+
T Consensus 22 ~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 22 HLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHHH
Confidence 6677777888888888888764
No 171
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=27.29 E-value=1.3e+02 Score=24.24 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 118 SNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
..+.+++++.++.+++++|+++++++
T Consensus 139 ~~~~l~~~i~~L~~~l~~le~~~~~~ 164 (166)
T 3pjs_K 139 AEEAYTRTTRALHERFDRLERMLDDN 164 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788888888888888888764
No 172
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.21 E-value=1e+02 Score=27.07 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3590 110 EKLKDAKMSNMRHRKILAE 128 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~E 128 (258)
+++..|+.||.+||..+.+
T Consensus 129 eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 129 NEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444445544444444
No 173
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.40 E-value=1.5e+02 Score=19.90 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
+.-++|.++-.|...-+++|+++.+++.+|++-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777778888888888888887777777653
No 174
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.19 E-value=25 Score=22.69 Aligned_cols=28 Identities=7% Similarity=-0.053 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 119 NMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 119 N~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
.+.+|+.|..+..+.+.+++++.....+
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554443
No 175
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.90 E-value=82 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQ 134 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe 134 (258)
...++..+|+.||++|+++-.+--+++|
T Consensus 156 ~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 156 ENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 176
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.76 E-value=1.3e+02 Score=18.89 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENE 132 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~e 132 (258)
..|.+..+.+.||-.|.+++++++.+
T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44566667778888888888777654
No 177
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=25.58 E-value=51 Score=25.22 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3590 118 SNMRHRKILAERENELQALLS 138 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
+.+.|++++.+++.++..|+.
T Consensus 5 ~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 5 KLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444443
No 178
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=25.51 E-value=1.2e+02 Score=25.98 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.-++|..|+.|.=++...+...+-+|.+|..+++.-..+
T Consensus 69 ELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGK 108 (180)
T 1j1e_C 69 QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhc
Confidence 5557778888888889999999999999999999886543
No 179
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=25.51 E-value=91 Score=28.20 Aligned_cols=25 Identities=4% Similarity=-0.102 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 118 SNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
|.+.++++++++++||++|++...+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778888888888888888776655
No 180
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.20 E-value=1.4e+02 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 113 KDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
..++...+.+++.+.+.+++++.++.++
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 181
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.20 E-value=1.5e+02 Score=19.35 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQA 135 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~ 135 (258)
+..|++-..|..+|..|..+.+.+.+.+.+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 466777777888888887777776665544
No 182
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.05 E-value=31 Score=31.87 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLAL 147 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl 147 (258)
..|.++..++.+.+.|+..|.+++++|+.|++++.+-..+.
T Consensus 8 ~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 8 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777899999999999999999999999887755543
No 183
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.89 E-value=62 Score=25.41 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 112 LKDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
+..|+.|...++.+-..+++.|.++
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444444333333333333
No 184
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.33 E-value=1.5e+02 Score=28.72 Aligned_cols=33 Identities=12% Similarity=-0.097 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
.|..|-+.++.+|+++++++.++++++.+....
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777788888888888888888765554
No 185
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.16 E-value=25 Score=31.11 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+..+++..++.||++++++|.++.+++.+.+..+...+.
T Consensus 152 ~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k 190 (250)
T 2ve7_C 152 SSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAV 190 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------------CTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
No 186
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.12 E-value=54 Score=29.50 Aligned_cols=34 Identities=6% Similarity=-0.062 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++++..|+.++..+..+...+.+++..+++++..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~ 86 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLA 86 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555554444444444455555544444
No 187
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=23.98 E-value=75 Score=29.20 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+|+.|+.+.+.|+++|++++.++..+...+
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555544443
No 188
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.53 E-value=1.3e+02 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 113 KDAKMSNMRHRKILAERENELQAL 136 (258)
Q Consensus 113 ~~L~~EN~~Lkk~I~Eke~eIe~L 136 (258)
..|+.|...+..+|.+++++.+.|
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 189
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.51 E-value=73 Score=25.39 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL 140 (258)
+.++++..++..|.+||+--++|-.+..+.--.|
T Consensus 8 ~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 8 ELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666655555444433
No 190
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.45 E-value=1.1e+02 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 112 LKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 112 i~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+..|++..+++..+|..++.+|.+|++++.+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQV 32 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999988876
No 191
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=23.40 E-value=1.1e+02 Score=22.21 Aligned_cols=32 Identities=9% Similarity=0.022 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
++.+...|-++||..+...+.|++-.+..+-+
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~ 35 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQRELLT 35 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 46677888899999999999999988877644
No 192
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=23.37 E-value=2.5e+02 Score=21.48 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3590 120 MRHRKILAERENELQALLSRLGSES 144 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~~ 144 (258)
+.+.+++.++.+++++++++++++.
T Consensus 114 ~~l~~~~~~l~~~l~~le~~~~~~r 138 (139)
T 3eff_K 114 EAYTRTTRALHERFDRLERMLDDNR 138 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666777777777777776643
No 193
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.27 E-value=67 Score=24.16 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALP 148 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~ 148 (258)
+.+++..+|+.||..||.... .++|++-..++.
T Consensus 26 EL~e~~~qLE~EN~~Lk~~as---------pEql~q~q~~l~ 58 (78)
T 1dip_A 26 ELVEKNSQLERENTLLKTLAS---------PEQLEKFQSRLS 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS---------SSCSCCCSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHhccC
Confidence 677777777777777776554 367777666654
No 194
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=22.94 E-value=53 Score=29.54 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q psy3590 120 MRHRKILAERENELQALLSRLGSESLALPSSGP 152 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~qL~~~~~kl~~~~~ 152 (258)
..+...|.||-++|..+++.|.+++-+|-+++.
T Consensus 210 ~~fv~LLNEKK~KIR~qqrlL~sa~i~l~~~~~ 242 (246)
T 1z56_A 210 AMMVTLLNEKKKKIRELHEILRQNNIKLSDDDV 242 (246)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTTTCC-------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 344555678888888888888888777655443
No 195
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.71 E-value=1.6e+02 Score=23.10 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhhc
Q psy3590 129 RENELQALLSRLGSE 143 (258)
Q Consensus 129 ke~eIe~L~~qL~~~ 143 (258)
+..++..|+.+|.++
T Consensus 70 L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 70 LQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444555443
No 196
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.56 E-value=1.3e+02 Score=29.12 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=26.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 116 KMS-NMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 116 ~~E-N~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..| -+.++.+|+++++++..+++++.+....
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666 8889999999999999999999876654
No 197
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.53 E-value=1.2e+02 Score=28.55 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
..++++..|+.|++.++.++..+.+++..+++++..
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~ 88 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKR 88 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777778888888888888888877643
No 198
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.52 E-value=1.2e+02 Score=27.86 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q psy3590 201 YWKALCHALKH 211 (258)
Q Consensus 201 ~~~~~~~~~~~ 211 (258)
||.++.+|.++
T Consensus 346 ~w~~i~~A~~~ 356 (426)
T 1lrz_A 346 QWEMINYALNH 356 (426)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 58888877776
No 199
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.40 E-value=1.2e+02 Score=26.28 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...+++.....|++.|+++++.+++++...+.+++.
T Consensus 31 ~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 31 VLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 344455556666777777777766666555544433
No 200
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=22.22 E-value=2.2e+02 Score=20.45 Aligned_cols=24 Identities=8% Similarity=0.369 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCc
Q psy3590 27 SVYNVVLMCIMGAAISFVISDKQD 50 (258)
Q Consensus 27 SVYnV~VlslI~vPVs~vl~s~pd 50 (258)
+.-.+.++.++++|+.+..++..+
T Consensus 11 aLi~~Sf~LVVgVPV~~Asp~~W~ 34 (62)
T 3arc_Z 11 ALVILSFVMVIGVPVAYASPQDWD 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHheeeeEEECCcchh
Confidence 334445667889999999887643
No 201
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.12 E-value=37 Score=27.17 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=10.8
Q ss_pred CCccchheeehhhccc
Q psy3590 173 PQPEALTVVKRELLVP 188 (258)
Q Consensus 173 ~~~~~~~~~~~~~~~~ 188 (258)
|.|+-||--+||.++-
T Consensus 39 p~d~~LTp~qKea~I~ 54 (110)
T 2oa5_A 39 SDDSILTAAKRESIIV 54 (110)
T ss_dssp --CCBCCHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHH
Confidence 6677788888887764
No 202
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=22.10 E-value=1.2e+02 Score=26.01 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
+.-++|+.|+.|.=++...+...+-+|..|..+++.-..+
T Consensus 66 ELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLrGK 105 (182)
T 1ytz_I 66 KLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGK 105 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGTCS
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 5667778899999999999999999999999999986554
No 203
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.09 E-value=1.9e+02 Score=20.65 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy3590 126 LAERENELQALLSRLGS 142 (258)
Q Consensus 126 I~Eke~eIe~L~~qL~~ 142 (258)
+.+++++|+.|+..|.+
T Consensus 50 ~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 50 VFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555544
No 204
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.06 E-value=1.6e+02 Score=20.35 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
.++.+|-.+...|-.++.++..++..++..+..+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~a 37 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAA 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544443
No 205
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=21.91 E-value=1.2e+02 Score=24.59 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=21.6
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhhccc
Q psy3590 118 SNMRH---RKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 118 EN~~L---kk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
||.+| |++....+.+|.+|+++|.+++-
T Consensus 44 ENaeY~aak~~q~~~e~ri~~Le~~L~~a~v 74 (158)
T 1grj_A 44 ENAEYHAAREQQGFCEGRIKDIEAKLSNAQV 74 (158)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhhCee
Confidence 56653 56677788999999999988664
No 206
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.81 E-value=1e+02 Score=22.94 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLAL 147 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~kl 147 (258)
..++=...|+...+.+...|..++++++.++.++.+-+.+|
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566888888888899999999999988888755543
No 207
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.69 E-value=1.7e+02 Score=21.98 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 108 LEEKLKDAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 108 ~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
..++...++.+.......-.+++.+|..|++++.
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555666666666666666666666666553
No 208
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.61 E-value=1.2e+02 Score=20.42 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERENELQA 135 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke~eIe~ 135 (258)
.|++..|+.|.+.+.+.++.+...++.
T Consensus 19 peelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444433
No 209
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.54 E-value=1.8e+02 Score=20.79 Aligned_cols=32 Identities=9% Similarity=-0.092 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
...-|+...+.++++|++++..++.|+..+..
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666666666665543
No 210
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.52 E-value=1.3e+02 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3590 120 MRHRKILAERENELQALLS 138 (258)
Q Consensus 120 ~~Lkk~I~Eke~eIe~L~~ 138 (258)
++|+.+|++++++|..|+.
T Consensus 50 ~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555444443
No 211
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.42 E-value=1.2e+02 Score=28.95 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 116 KMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 116 ~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..+.++|+..+..++..|..|++.+.+-..+
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666667777777777665443
No 212
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.34 E-value=2e+02 Score=19.58 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q psy3590 107 ELEEKLKDAKMSNMRHRK-------ILAERENELQALLSRLG 141 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk-------~I~Eke~eIe~L~~qL~ 141 (258)
+...++.+|+.+|-.|.+ .|+.+..+|..|+..+.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666655544 44445555555554443
No 213
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.00 E-value=1.2e+02 Score=28.80 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3590 118 SNMRHRKILAERENELQALLSRLGSESL 145 (258)
Q Consensus 118 EN~~Lkk~I~Eke~eIe~L~~qL~~~~~ 145 (258)
+.+.|+.++.+++++|+.|++++.+-..
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5566667777777777777776665443
No 214
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.55 E-value=1.1e+02 Score=28.99 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 111 KLKDAKMSNMRHRKILAERENELQALLSR 139 (258)
Q Consensus 111 ri~~L~~EN~~Lkk~I~Eke~eIe~L~~q 139 (258)
++..|+...++++..|.++..+|..|+.+
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 215
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.52 E-value=1.9e+02 Score=22.57 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3590 114 DAKMSNMRHRKILAERENELQALLSRLG 141 (258)
Q Consensus 114 ~L~~EN~~Lkk~I~Eke~eIe~L~~qL~ 141 (258)
+.+..|..|...-.+.+.++..|+.++.
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444443
No 216
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.48 E-value=2e+02 Score=21.36 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 106 SELEEKLKDAKMSNMRHRKILAERENELQALLS 138 (258)
Q Consensus 106 ~~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~ 138 (258)
...|..|..+..|.+.++-.|.+.+.+|+.|++
T Consensus 11 k~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 11 KAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 366778888899999999999999999999987
No 217
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.41 E-value=1.3e+02 Score=21.92 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhh
Q psy3590 129 RENELQALLSRLG 141 (258)
Q Consensus 129 ke~eIe~L~~qL~ 141 (258)
+|.||...+..|.
T Consensus 45 Le~EIatYRkLLE 57 (74)
T 2xv5_A 45 LDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 4556666655554
No 218
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.38 E-value=78 Score=21.63 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhh
Q psy3590 126 LAERENELQALLSRLG 141 (258)
Q Consensus 126 I~Eke~eIe~L~~qL~ 141 (258)
+.+++.+|+.|+.+|.
T Consensus 51 ~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 51 NEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 219
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.37 E-value=1.2e+02 Score=22.30 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLA 146 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~~~k 146 (258)
..++=...|+...+.+...|..++++++.++.++.+-+.+
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556688888889999999999999999988875543
No 220
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=20.33 E-value=2.1e+02 Score=22.20 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSE 143 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~~ 143 (258)
+.+-++-..+.++..=++.+.+.+.-|+.|+++|++.
T Consensus 61 e~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~~ 97 (98)
T 4fm3_A 61 ELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGET 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5556666677888888889999999999999998764
No 221
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.11 E-value=64 Score=25.46 Aligned_cols=33 Identities=30% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3590 110 EKLKDAKMSNMRHRKILAERENELQALLSRLGS 142 (258)
Q Consensus 110 Eri~~L~~EN~~Lkk~I~Eke~eIe~L~~qL~~ 142 (258)
+.+...+.|..++++.|..++.+|+.++.+-.+
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~s 63 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKAS 63 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
No 222
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=20.03 E-value=1.1e+02 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3590 109 EEKLKDAKMSNMRHRKILAERE 130 (258)
Q Consensus 109 eEri~~L~~EN~~Lkk~I~Eke 130 (258)
.|.+++|..||++||.-|.+-|
T Consensus 7 ~e~~q~ll~EN~~LreAlkqsN 28 (70)
T 3brv_B 7 PETLQRCLEENQELRDAIRQSN 28 (70)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 4555667777777776666543
No 223
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.01 E-value=1.7e+02 Score=18.33 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3590 107 ELEEKLKDAKMSNMRHRKILAERENEL 133 (258)
Q Consensus 107 ~~eEri~~L~~EN~~Lkk~I~Eke~eI 133 (258)
..||+...|..-.++|++++..+|..+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655544
Done!